Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344340 | XP_024626753.1 | 93.502 | 277 | 2 | 3 | 1 | 277 | 1 | 261 | 3.06e-177 | 499 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344340 | I3SPL3 | 93.502 | 277 | 2 | 3 | 1 | 277 | 1 | 261 | 1.46e-177 | 499 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006070 | Msa1344340 | 0.801227 | 9.947409e-49 | -8.615850e-47 |
| Msa0011960 | Msa1344340 | 0.833849 | 4.211491e-56 | -8.615850e-47 |
| Msa0012080 | Msa1344340 | 0.852404 | 4.721607e-61 | -8.615850e-47 |
| Msa0024710 | Msa1344340 | 0.809597 | 1.749495e-50 | -8.615850e-47 |
| Msa0032090 | Msa1344340 | 0.834230 | 3.380186e-56 | -8.615850e-47 |
| Msa0032430 | Msa1344340 | 0.823438 | 1.385050e-53 | -8.615850e-47 |
| Msa0032580 | Msa1344340 | 0.852152 | 5.567920e-61 | -8.615850e-47 |
| Msa0040690 | Msa1344340 | 0.837988 | 3.754208e-57 | -8.615850e-47 |
| Msa0041720 | Msa1344340 | 0.875426 | 3.110156e-68 | -8.615850e-47 |
| Msa0043660 | Msa1344340 | 0.832817 | 7.613191e-56 | -8.615850e-47 |
| Msa0048430 | Msa1344340 | 0.813566 | 2.398504e-51 | -8.615850e-47 |
| Msa0053600 | Msa1344340 | 0.843663 | 1.219749e-58 | -8.615850e-47 |
| Msa0054440 | Msa1344340 | 0.818660 | 1.745960e-52 | -8.615850e-47 |
| Msa0054480 | Msa1344340 | 0.817881 | 2.619566e-52 | -8.615850e-47 |
| Msa0058300 | Msa1344340 | 0.812943 | 3.286763e-51 | -8.615850e-47 |
| Msa0063530 | Msa1344340 | 0.801792 | 7.618936e-49 | -8.615850e-47 |
| Msa0070700 | Msa1344340 | 0.823101 | 1.660446e-53 | -8.615850e-47 |
| Msa0071230 | Msa1344340 | 0.800431 | 1.445924e-48 | -8.615850e-47 |
| Msa0075960 | Msa1344340 | 0.803317 | 3.693276e-49 | -8.615850e-47 |
| Msa0079380 | Msa1344340 | 0.829468 | 5.062517e-55 | -8.615850e-47 |
| Msa0079820 | Msa1344340 | 0.821339 | 4.256402e-53 | -8.615850e-47 |
| Msa0080200 | Msa1344340 | 0.806724 | 7.160143e-50 | -8.615850e-47 |
| Msa0085360 | Msa1344340 | -0.806190 | 9.278901e-50 | -8.615850e-47 |
| Msa0091250 | Msa1344340 | -0.832492 | 9.164882e-56 | -8.615850e-47 |
| Msa0098480 | Msa1344340 | 0.810897 | 9.171677e-51 | -8.615850e-47 |
| Msa0099220 | Msa1344340 | 0.835573 | 1.551317e-56 | -8.615850e-47 |
| Msa0105620 | Msa1344340 | 0.823038 | 1.717080e-53 | -8.615850e-47 |
| Msa0115130 | Msa1344340 | 0.807705 | 4.435651e-50 | -8.615850e-47 |
| Msa0115270 | Msa1344340 | 0.805109 | 1.564612e-49 | -8.615850e-47 |
| Msa0118590 | Msa1344340 | 0.811986 | 5.319789e-51 | -8.615850e-47 |
| Msa1344340 | Msa1358250 | 0.809421 | 1.908229e-50 | -8.615850e-47 |
| Msa1344340 | Msa1358670 | 0.826321 | 2.892327e-54 | -8.615850e-47 |
| Msa1344340 | Msa1365600 | 0.808600 | 2.860485e-50 | -8.615850e-47 |
| Msa1344340 | Msa1385100 | 0.822956 | 1.794752e-53 | -8.615850e-47 |
| Msa1344340 | Msa1392780 | 0.822507 | 2.283136e-53 | -8.615850e-47 |
| Msa1344340 | Msa1394290 | 0.806418 | 8.306532e-50 | -8.615850e-47 |
| Msa1344340 | Msa1400580 | 0.808486 | 3.024326e-50 | -8.615850e-47 |
| Msa1344340 | Msa1423350 | 0.803521 | 3.350467e-49 | -8.615850e-47 |
| Msa1344340 | Msa1439700 | 0.801059 | 1.076611e-48 | -8.615850e-47 |
| Msa1344340 | Msa1457920 | 0.810193 | 1.301935e-50 | -8.615850e-47 |
| Msa0615440 | Msa1344340 | 0.827311 | 1.678218e-54 | -8.615850e-47 |
| Msa0616240 | Msa1344340 | 0.815974 | 7.020048e-52 | -8.615850e-47 |
| Msa0621490 | Msa1344340 | 0.803149 | 4.000231e-49 | -8.615850e-47 |
| Msa0625720 | Msa1344340 | 0.819161 | 1.343116e-52 | -8.615850e-47 |
| Msa0677290 | Msa1344340 | 0.811953 | 5.409163e-51 | -8.615850e-47 |
| Msa0679700 | Msa1344340 | 0.801838 | 7.454546e-49 | -8.615850e-47 |
| Msa0685140 | Msa1344340 | 0.816971 | 4.199872e-52 | -8.615850e-47 |
| Msa0689260 | Msa1344340 | 0.808580 | 2.888897e-50 | -8.615850e-47 |
| Msa0698490 | Msa1344340 | 0.826578 | 2.512361e-54 | -8.615850e-47 |
| Msa0698660 | Msa1344340 | 0.823107 | 1.655159e-53 | -8.615850e-47 |
| Msa0698920 | Msa1344340 | 0.804705 | 1.900515e-49 | -8.615850e-47 |
| Msa0699570 | Msa1344340 | 0.818370 | 2.030987e-52 | -8.615850e-47 |
| Msa0711780 | Msa1344340 | 0.803085 | 4.124507e-49 | -8.615850e-47 |
| Msa0715700 | Msa1344340 | 0.818113 | 2.321910e-52 | -8.615850e-47 |
| Msa0716840 | Msa1344340 | 0.805199 | 1.498172e-49 | -8.615850e-47 |
| Msa0719420 | Msa1344340 | 0.801794 | 7.612064e-49 | -8.615850e-47 |
| Msa0770360 | Msa1344340 | 0.825001 | 5.946607e-54 | -8.615850e-47 |
| Msa0789680 | Msa1344340 | 0.805650 | 1.204884e-49 | -8.615850e-47 |
| Msa0793800 | Msa1344340 | 0.823700 | 1.203047e-53 | -8.615850e-47 |
| Msa0802410 | Msa1344340 | 0.819673 | 1.026368e-52 | -8.615850e-47 |
| Msa0813740 | Msa1344340 | 0.814970 | 1.174791e-51 | -8.615850e-47 |
| Msa0826220 | Msa1344340 | 0.823097 | 1.664141e-53 | -8.615850e-47 |
| Msa0826760 | Msa1344340 | 0.811464 | 6.909320e-51 | -8.615850e-47 |
| Msa0831530 | Msa1344340 | 0.803418 | 3.518934e-49 | -8.615850e-47 |
| Msa0127020 | Msa1344340 | 0.810043 | 1.402126e-50 | -8.615850e-47 |
| Msa0127050 | Msa1344340 | 0.805933 | 1.050710e-49 | -8.615850e-47 |
| Msa0136070 | Msa1344340 | 0.886608 | 2.948993e-72 | -8.615850e-47 |
| Msa0136100 | Msa1344340 | 0.881145 | 3.060134e-70 | -8.615850e-47 |
| Msa0137550 | Msa1344340 | 0.824781 | 6.700548e-54 | -8.615850e-47 |
| Msa0144370 | Msa1344340 | 0.822445 | 2.359787e-53 | -8.615850e-47 |
| Msa0145730 | Msa1344340 | 0.803083 | 4.128960e-49 | -8.615850e-47 |
| Msa0150820 | Msa1344340 | 0.824229 | 9.036133e-54 | -8.615850e-47 |
| Msa0152140 | Msa1344340 | 0.839632 | 1.410480e-57 | -8.615850e-47 |
| Msa0159340 | Msa1344340 | 0.842422 | 2.611558e-58 | -8.615850e-47 |
| Msa0160550 | Msa1344340 | 0.814243 | 1.701191e-51 | -8.615850e-47 |
| Msa0165220 | Msa1344340 | 0.811278 | 7.584083e-51 | -8.615850e-47 |
| Msa0165660 | Msa1344340 | 0.827737 | 1.326043e-54 | -8.615850e-47 |
| Msa0169280 | Msa1344340 | 0.808552 | 2.928001e-50 | -8.615850e-47 |
| Msa0171540 | Msa1344340 | 0.814429 | 1.547836e-51 | -8.615850e-47 |
| Msa0172070 | Msa1344340 | 0.827456 | 1.549115e-54 | -8.615850e-47 |
| Msa0172970 | Msa1344340 | 0.848760 | 4.990124e-60 | -8.615850e-47 |
| Msa0177700 | Msa1344340 | -0.803816 | 2.910553e-49 | -8.615850e-47 |
| Msa0187120 | Msa1344340 | 0.822385 | 2.437160e-53 | -8.615850e-47 |
| Msa0189300 | Msa1344340 | 0.825807 | 3.831922e-54 | -8.615850e-47 |
| Msa0193120 | Msa1344340 | 0.807082 | 6.014120e-50 | -8.615850e-47 |
| Msa0197660 | Msa1344340 | 0.814599 | 1.419429e-51 | -8.615850e-47 |
| Msa0231660 | Msa1344340 | 0.822948 | 1.802747e-53 | -8.615850e-47 |
| Msa1224810 | Msa1344340 | 0.805209 | 1.491083e-49 | -8.615850e-47 |
| Msa1259060 | Msa1344340 | 0.801034 | 1.089451e-48 | -8.615850e-47 |
| Msa1280420 | Msa1344340 | 0.809909 | 1.499100e-50 | -8.615850e-47 |
| Msa1287460 | Msa1344340 | 0.803390 | 3.567456e-49 | -8.615850e-47 |
| Msa1302850 | Msa1344340 | 0.851406 | 9.061022e-61 | -8.615850e-47 |
| Msa0382270 | Msa1344340 | 0.810724 | 9.998794e-51 | -8.615850e-47 |
| Msa0385580 | Msa1344340 | 0.803908 | 2.785304e-49 | -8.615850e-47 |
| Msa0386920 | Msa1344340 | 0.804032 | 2.623952e-49 | -8.615850e-47 |
| Msa0397540 | Msa1344340 | 0.802782 | 4.765310e-49 | -8.615850e-47 |
| Msa0402180 | Msa1344340 | 0.811759 | 5.961568e-51 | -8.615850e-47 |
| Msa0402790 | Msa1344340 | 0.801226 | 9.949428e-49 | -8.615850e-47 |
| Msa0434180 | Msa1344340 | 0.816594 | 5.103275e-52 | -8.615850e-47 |
| Msa0434740 | Msa1344340 | 0.800765 | 1.235999e-48 | -8.615850e-47 |
| Msa0435690 | Msa1344340 | 0.822488 | 2.306288e-53 | -8.615850e-47 |
| Msa0480000 | Msa1344340 | 0.803086 | 4.122521e-49 | -8.615850e-47 |
| Msa0999970 | Msa1344340 | 0.818451 | 1.946420e-52 | -8.615850e-47 |
| Msa1009820 | Msa1344340 | 0.819968 | 8.787504e-53 | -8.615850e-47 |
| Msa1011680 | Msa1344340 | 0.803945 | 2.735371e-49 | -8.615850e-47 |
| Msa1014540 | Msa1344340 | 0.804755 | 1.855368e-49 | -8.615850e-47 |
| Msa1019640 | Msa1344340 | 0.849598 | 2.918570e-60 | -8.615850e-47 |
| Msa1037420 | Msa1344340 | 0.801960 | 7.034468e-49 | -8.615850e-47 |
| Msa1051200 | Msa1344340 | 0.825853 | 3.736656e-54 | -8.615850e-47 |
| Msa1064250 | Msa1344340 | 0.805728 | 1.160635e-49 | -8.615850e-47 |
| Msa1080800 | Msa1344340 | 0.817677 | 2.912575e-52 | -8.615850e-47 |
| Msa1087710 | Msa1344340 | 0.827484 | 1.524838e-54 | -8.615850e-47 |
| Msa1088640 | Msa1344340 | 0.816065 | 6.701293e-52 | -8.615850e-47 |
| Msa1103980 | Msa1344340 | 0.808167 | 3.537402e-50 | -8.615850e-47 |
| Msa1104090 | Msa1344340 | 0.800132 | 1.663448e-48 | -8.615850e-47 |
| Msa1104370 | Msa1344340 | 0.847718 | 9.686755e-60 | -8.615850e-47 |
| Msa1106700 | Msa1344340 | 0.807695 | 4.458412e-50 | -8.615850e-47 |
| Msa0239800 | Msa1344340 | 0.816864 | 4.437778e-52 | -8.615850e-47 |
| Msa0241470 | Msa1344340 | 0.815258 | 1.013528e-51 | -8.615850e-47 |
| Msa0267780 | Msa1344340 | 0.811055 | 8.476984e-51 | -8.615850e-47 |
| Msa0277820 | Msa1344340 | 0.800902 | 1.158866e-48 | -8.615850e-47 |
| Msa0279220 | Msa1344340 | 0.813609 | 2.346932e-51 | -8.615850e-47 |
| Msa0279240 | Msa1344340 | 0.813276 | 2.777724e-51 | -8.615850e-47 |
| Msa0279700 | Msa1344340 | 0.832980 | 6.934758e-56 | -8.615850e-47 |
| Msa0299870 | Msa1344340 | 0.820334 | 7.247396e-53 | -8.615850e-47 |
| Msa0309750 | Msa1344340 | 0.831665 | 1.467978e-55 | -8.615850e-47 |
| Msa0309770 | Msa1344340 | 0.804949 | 1.689594e-49 | -8.615850e-47 |
| Msa0317510 | Msa1344340 | 0.805134 | 1.545841e-49 | -8.615850e-47 |
| Msa0318980 | Msa1344340 | 0.818435 | 1.963152e-52 | -8.615850e-47 |
| Msa0337620 | Msa1344340 | 0.829223 | 5.806019e-55 | -8.615850e-47 |
| Msa0351030 | Msa1344340 | 0.801532 | 8.615255e-49 | -8.615850e-47 |
| Msa1135890 | Msa1344340 | 0.813246 | 2.819967e-51 | -8.615850e-47 |
| Msa1137700 | Msa1344340 | 0.824220 | 9.083808e-54 | -8.615850e-47 |
| Msa1181250 | Msa1344340 | 0.801887 | 7.284665e-49 | -8.615850e-47 |
| Msa1206850 | Msa1344340 | 0.820394 | 7.020743e-53 | -8.615850e-47 |
| Msa1208880 | Msa1344340 | 0.801422 | 9.071919e-49 | -8.615850e-47 |
| Msa1216350 | Msa1344340 | 0.804757 | 1.853276e-49 | -8.615850e-47 |
| Msa0483800 | Msa1344340 | 0.818413 | 1.986124e-52 | -8.615850e-47 |
| Msa0506670 | Msa1344340 | 0.823517 | 1.327070e-53 | -8.615850e-47 |
| Msa0511310 | Msa1344340 | 0.806123 | 9.585190e-50 | -8.615850e-47 |
| Msa0520710 | Msa1344340 | 0.813458 | 2.533723e-51 | -8.615850e-47 |
| Msa0529890 | Msa1344340 | 0.820214 | 7.720925e-53 | -8.615850e-47 |
| Msa0542090 | Msa1344340 | 0.822303 | 2.545816e-53 | -8.615850e-47 |
| Msa0542130 | Msa1344340 | 0.820478 | 6.714648e-53 | -8.615850e-47 |
| Msa0542750 | Msa1344340 | 0.803844 | 2.870693e-49 | -8.615850e-47 |
| Msa0584860 | Msa1344340 | 0.820322 | 7.291978e-53 | -8.615850e-47 |
| Msa0585560 | Msa1344340 | 0.805880 | 1.078147e-49 | -8.615850e-47 |
| Msa0850960 | Msa1344340 | 0.803272 | 3.773376e-49 | -8.615850e-47 |
| Msa0865330 | Msa1344340 | 0.804499 | 2.097773e-49 | -8.615850e-47 |
| Msa0865890 | Msa1344340 | 0.830840 | 2.341388e-55 | -8.615850e-47 |
| Msa0871270 | Msa1344340 | 0.805242 | 1.467464e-49 | -8.615850e-47 |
| Msa0909000 | Msa1344340 | -0.812318 | 4.502690e-51 | -8.615850e-47 |
| Msa0938220 | Msa1344340 | 0.807541 | 4.805593e-50 | -8.615850e-47 |
| Msa0945440 | Msa1344340 | 0.812792 | 3.547574e-51 | -8.615850e-47 |
| Msa0959360 | Msa1344340 | 0.825845 | 3.753971e-54 | -8.615850e-47 |
| Msa0970420 | Msa1344340 | 0.804681 | 1.922206e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344340 | MtrunA17_Chr1g0207261 | 93.502 | 277 | 2 | 3 | 1 | 277 | 1 | 261 | 0.0 | 499 |
| Msa1344340 | MtrunA17_Chr5g0393771 | 59.459 | 74 | 25 | 1 | 125 | 198 | 19 | 87 | 4.88e-18 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344340 | AT3G19650.1 | 32.051 | 312 | 152 | 9 | 7 | 277 | 10 | 302 | 5.32e-17 | 79.7 |
Find 97 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTCCTTTCATTCCTTTC+TGG | 0.052010 | tig0006806:+56878 | None:intergenic |
| CCATCTCTTCTATATTTCTT+AGG | 0.105254 | tig0006806:+58981 | None:intergenic |
| CTTCTTTGGGATTAGGATTT+AGG | 0.107492 | tig0006806:+59199 | None:intergenic |
| TTCAAACTAAAGCCAATATT+TGG | 0.198057 | tig0006806:-56553 | Msa1344340:three_prime_UTR |
| ATCTGATCATCCTCATTCTT+TGG | 0.243825 | tig0006806:+56608 | None:intergenic |
| TGAGGAAAAGGCCAGCATTT+AGG | 0.247990 | tig0006806:-56982 | Msa1344340:CDS |
| TTTCTGGAGGGTGGCTAGTA+TGG | 0.266311 | tig0006806:+56894 | None:intergenic |
| TCGAATCCTTCTTTGGGATT+AGG | 0.276855 | tig0006806:+59192 | None:intergenic |
| ATGTGAATCGAATCCTTCTT+TGG | 0.283101 | tig0006806:+59185 | None:intergenic |
| TGAGAAATCACTGGCTAAAC+TGG | 0.294321 | tig0006806:-57065 | Msa1344340:CDS |
| GAGGAAAAGGCCAGCATTTA+GGG | 0.296936 | tig0006806:-56981 | Msa1344340:CDS |
| TATAAAGAAATCATGAAAAT+TGG | 0.297933 | tig0006806:+56460 | None:intergenic |
| TTCTCTGTTTGAGTCTTAAT+AGG | 0.302168 | tig0006806:+56674 | None:intergenic |
| CTTCCTAGGTTCTCGCTTGT+TGG | 0.303209 | tig0006806:+56790 | None:intergenic |
| ATGACAAGCTTACCAAATAT+TGG | 0.324127 | tig0006806:+56541 | None:intergenic |
| CATCTCTTCTATATTTCTTA+GGG | 0.330904 | tig0006806:+58982 | None:intergenic |
| AGAGGAAGAGACAAATTTAA+TGG | 0.334230 | tig0006806:-56713 | Msa1344340:CDS |
| TTTGACCTGTCTCCAACCTT+TGG | 0.360011 | tig0006806:+57104 | None:intergenic |
| TAATATCACAATGATCGATT+TGG | 0.373867 | tig0006806:+56386 | None:intergenic |
| TCCTCTGCAATTCGCTTCTC+AGG | 0.377354 | tig0006806:+56821 | None:intergenic |
| GCTTCTCAGGTCTATCTAGA+TGG | 0.381632 | tig0006806:+56834 | None:intergenic |
| TGTGAATCGAATCCTTCTTT+GGG | 0.381935 | tig0006806:+59186 | None:intergenic |
| TCAGGTCTATCTAGATGGTT+AGG | 0.410188 | tig0006806:+56839 | None:intergenic |
| ATAGGTTAACAGGGTTATCC+AGG | 0.411868 | tig0006806:-56293 | Msa1344340:three_prime_UTR |
| TGATAATAAGAGCGAGATCT+TGG | 0.413507 | tig0006806:+58876 | None:intergenic |
| TCATGAAAATTGGTAATCTC+TGG | 0.425387 | tig0006806:+56470 | None:intergenic |
| AAGATCTCGCTCTTATTATC+AGG | 0.426217 | tig0006806:-58874 | Msa1344340:intron |
| GATGAAAATCCATCCTTCCT+AGG | 0.435435 | tig0006806:+56776 | None:intergenic |
| TCTGTTGAGCACTTGAGCTC+TGG | 0.435869 | tig0006806:-56332 | Msa1344340:three_prime_UTR |
| GGGTTATCCCTAATGACAAC+GGG | 0.439716 | tig0006806:-56272 | Msa1344340:three_prime_UTR |
| TCCTTTCATTCCTTTCTGGA+GGG | 0.447281 | tig0006806:+56882 | None:intergenic |
| TGGAGGTTGAGATGAATGTT+TGG | 0.448773 | tig0006806:+58896 | None:intergenic |
| GGATGATCAGATTGCAAAGC+TGG | 0.457045 | tig0006806:-56597 | Msa1344340:CDS |
| TTCCTTTCATTCCTTTCTGG+AGG | 0.457901 | tig0006806:+56881 | None:intergenic |
| CAACACCTTCTGTGAGGAAA+AGG | 0.461132 | tig0006806:-56994 | Msa1344340:CDS |
| TTTACTGTCACTGTCGCAGC+TGG | 0.462931 | tig0006806:+56923 | None:intergenic |
| GAGACATGTAAATCTAGAAC+AGG | 0.478739 | tig0006806:+56100 | None:intergenic |
| TGGTTCAGAATGATCATTTG+TGG | 0.481130 | tig0006806:+58923 | None:intergenic |
| ATCTTCTTCTCCCTAAATGC+TGG | 0.485997 | tig0006806:+56971 | None:intergenic |
| AAAGGTATATGCTCAAAGTA+AGG | 0.495225 | tig0006806:-57134 | Msa1344340:CDS |
| CTAAATCCTAATCCCAAAGA+AGG | 0.496188 | tig0006806:-59198 | Msa1344340:five_prime_UTR |
| AGAATGACGACGCTTCGAAT+CGG | 0.503307 | tig0006806:+59116 | None:intergenic |
| TTTCATTCCTTTCTGGAGGG+TGG | 0.506208 | tig0006806:+56885 | None:intergenic |
| TTTCATCAAGAGTAAGGTAT+GGG | 0.512420 | tig0006806:-56760 | Msa1344340:CDS |
| TGGTCGAAGCACTGGTCAAA+GGG | 0.514223 | tig0006806:-57283 | Msa1344340:CDS |
| GTGCAGGTTGGTCGAAGCAC+TGG | 0.521659 | tig0006806:-57291 | Msa1344340:CDS |
| AGAAGCGAATTGCAGAGGAC+AGG | 0.525004 | tig0006806:-56817 | Msa1344340:CDS |
| CCTAAGAAATATAGAAGAGA+TGG | 0.536031 | tig0006806:-58981 | Msa1344340:CDS |
| TAAATATGAATTGTTGATGA+GGG | 0.536912 | tig0006806:+56124 | None:intergenic |
| TAAGGAGAATAACCAAAGGT+TGG | 0.542846 | tig0006806:-57116 | Msa1344340:CDS |
| AATAACCAAAGGTTGGAGAC+AGG | 0.542889 | tig0006806:-57109 | Msa1344340:CDS |
| TTGGTCGAAGCACTGGTCAA+AGG | 0.551358 | tig0006806:-57284 | Msa1344340:CDS |
| GAAGCGAATTGCAGAGGACA+GGG | 0.551739 | tig0006806:-56816 | Msa1344340:CDS |
| TTAAGACTCAAACAGAGAAG+TGG | 0.554278 | tig0006806:-56670 | Msa1344340:CDS |
| TAATAAGAGCGAGATCTTGG+AGG | 0.562376 | tig0006806:+58879 | None:intergenic |
| GCAAAGAGATGAGAAATCAC+TGG | 0.563837 | tig0006806:-57074 | Msa1344340:CDS |
| ATAAATATGAATTGTTGATG+AGG | 0.565427 | tig0006806:+56123 | None:intergenic |
| AAGCGAGAACCTAGGAAGGA+TGG | 0.574352 | tig0006806:-56785 | Msa1344340:CDS |
| ACCCTCCAGAAAGGAATGAA+AGG | 0.576042 | tig0006806:-56883 | Msa1344340:CDS |
| TCCAGAAAGGAATGAAAGGA+AGG | 0.580588 | tig0006806:-56879 | Msa1344340:CDS |
| AATATTTGGTAAGCTTGTCA+TGG | 0.581975 | tig0006806:-56539 | Msa1344340:three_prime_UTR |
| ATACTAGCCACCCTCCAGAA+AGG | 0.585699 | tig0006806:-56892 | Msa1344340:CDS |
| GAAACATGATTTGTATCAAG+AGG | 0.586742 | tig0006806:-56648 | Msa1344340:CDS |
| AAATCACTGGCTAAACTGGA+TGG | 0.588753 | tig0006806:-57061 | Msa1344340:CDS |
| GCTAAGTTCAGCATAGCACC+TGG | 0.589155 | tig0006806:-56356 | Msa1344340:three_prime_UTR |
| AGATTCTATTCCAAAGAATG+AGG | 0.590814 | tig0006806:-56618 | Msa1344340:CDS |
| GTAGATAGTTTAGCAAAGCA+TGG | 0.591110 | tig0006806:+56207 | None:intergenic |
| ATGACGACGCTTCGAATCGG+AGG | 0.593613 | tig0006806:+59119 | None:intergenic |
| AGTGACAGTGATACGTAGAA+AGG | 0.593843 | tig0006806:-59235 | Msa1344340:five_prime_UTR |
| TATTTCAACATGTGCCATGT+GGG | 0.594116 | tig0006806:-56500 | Msa1344340:three_prime_UTR |
| CTCAAGTGCTCAACAGACCC+AGG | 0.598621 | tig0006806:+56338 | None:intergenic |
| GGATTCGATTCACATTCTTG+TGG | 0.600602 | tig0006806:-59177 | Msa1344340:five_prime_UTR |
| ACCTGAGAAGCGAATTGCAG+AGG | 0.607322 | tig0006806:-56822 | Msa1344340:CDS |
| TGAATGGGGCAATACTGTGC+AGG | 0.607456 | tig0006806:-57307 | Msa1344340:CDS |
| TTCATCAAGAGTAAGGTATG+GGG | 0.620262 | tig0006806:-56759 | Msa1344340:CDS |
| CAACAAGCGAGAACCTAGGA+AGG | 0.622024 | tig0006806:-56789 | Msa1344340:CDS |
| GATCTCAGTGGATTCAAGAG+AGG | 0.625358 | tig0006806:-56951 | Msa1344340:CDS |
| AGAAAGGAATGAAAGGAAGG+AGG | 0.636511 | tig0006806:-56876 | Msa1344340:CDS |
| TCATCAAGAGTAAGGTATGG+GGG | 0.637056 | tig0006806:-56758 | Msa1344340:CDS |
| AATCCAACAAGCGAGAACCT+AGG | 0.638185 | tig0006806:-56793 | Msa1344340:CDS |
| TAGGTTAACAGGGTTATCCA+GGG | 0.638683 | tig0006806:-56292 | Msa1344340:three_prime_UTR |
| ACTGGTCAAAGGGAAGCTGA+TGG | 0.653810 | tig0006806:-57273 | Msa1344340:intron |
| AGGGTTATCCCTAATGACAA+CGG | 0.654194 | tig0006806:-56273 | Msa1344340:three_prime_UTR |
| CTAAGTTCAGCATAGCACCT+GGG | 0.655614 | tig0006806:-56355 | Msa1344340:three_prime_UTR |
| GGTTGAGATGAATGTTTGGA+CGG | 0.657350 | tig0006806:+58900 | None:intergenic |
| TTATTTCAACATGTGCCATG+TGG | 0.659372 | tig0006806:-56501 | Msa1344340:three_prime_UTR |
| CTAAGCTCGATCGTGAACCA+AGG | 0.670920 | tig0006806:-59095 | Msa1344340:intron |
| TGGGGCAATACTGTGCAGGT+TGG | 0.672427 | tig0006806:-57303 | Msa1344340:CDS |
| AAAGTAAGGAGAATAACCAA+AGG | 0.679155 | tig0006806:-57120 | Msa1344340:CDS |
| TGAGATGAATGTTTGGACGG+TGG | 0.681415 | tig0006806:+58903 | None:intergenic |
| GTTGTCATTAGGGATAACCC+TGG | 0.682031 | tig0006806:+56275 | None:intergenic |
| ATGATCCAACACCTTCTGTG+AGG | 0.687855 | tig0006806:-57000 | Msa1344340:CDS |
| TCTCTGGAAATTGTCCCACA+TGG | 0.701395 | tig0006806:+56486 | None:intergenic |
| TAGGGAGAAGAAGATCTCAG+TGG | 0.726006 | tig0006806:-56963 | Msa1344340:CDS |
| GGAGGCAATAGCAATCACAG+AGG | 0.738956 | tig0006806:-56731 | Msa1344340:CDS |
| GTTATCCCTAATGACAACGG+GGG | 0.742554 | tig0006806:-56270 | Msa1344340:three_prime_UTR |
| GGTTATCCCTAATGACAACG+GGG | 0.760063 | tig0006806:-56271 | Msa1344340:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCATTTTATTTAAATGTT+AGG | - | tig0006806:56948-56967 | Msa1344340:CDS | 10.0% |
| !!! | ATCATTTTATTTAAATGTTA+GGG | - | tig0006806:56949-56968 | Msa1344340:CDS | 10.0% |
| !!! | AATCATTTATTTTTAAACAA+AGG | + | tig0006806:57232-57251 | None:intergenic | 10.0% |
| !!! | TTGTCTTTTATTAACATTTA+TGG | + | tig0006806:57673-57692 | None:intergenic | 15.0% |
| !! | TATAAAGAAATCATGAAAAT+TGG | + | tig0006806:58902-58921 | None:intergenic | 15.0% |
| !!! | TTTTGTTTGAATGTTGATTA+TGG | - | tig0006806:56339-56358 | Msa1344340:three_prime_UTR | 20.0% |
| !! | TTAATGTGCTTCTTTATATT+TGG | - | tig0006806:56539-56558 | Msa1344340:three_prime_UTR | 20.0% |
| !!! | AATTTTTTTATCTCATTCTG+AGG | + | tig0006806:56922-56941 | None:intergenic | 20.0% |
| !! | AAATGTTAATAAAAGACAAC+TGG | - | tig0006806:57674-57693 | Msa1344340:intron | 20.0% |
| !! | TACCTTTATATAAACAGTAT+TGG | - | tig0006806:57833-57852 | Msa1344340:intron | 20.0% |
| !! | TTCCAATACTGTTTATATAA+AGG | + | tig0006806:57838-57857 | None:intergenic | 20.0% |
| !! | ACATCTATAGCATATAAAAA+GGG | + | tig0006806:57926-57945 | None:intergenic | 20.0% |
| !! | AACATCTATAGCATATAAAA+AGG | + | tig0006806:57927-57946 | None:intergenic | 20.0% |
| !!! | CTTTACATGTTTTAGTTTTA+TGG | - | tig0006806:58930-58949 | Msa1344340:CDS | 20.0% |
| !!! | CTAAACTATCTACTTTTTTT+TGG | - | tig0006806:59162-59181 | Msa1344340:five_prime_UTR | 20.0% |
| !!! | ATCTACTTTTTTTTGGTATA+TGG | - | tig0006806:59169-59188 | Msa1344340:five_prime_UTR | 20.0% |
| !!! | TAAATATGAATTGTTGATGA+GGG | + | tig0006806:59238-59257 | None:intergenic | 20.0% |
| !! | ATAAATATGAATTGTTGATG+AGG | + | tig0006806:59239-59258 | None:intergenic | 20.0% |
| ! | CATCTCTTCTATATTTCTTA+GGG | + | tig0006806:56380-56399 | None:intergenic | 25.0% |
| ! | ATGCAAATTTGAATGTAGTT+AGG | + | tig0006806:56578-56597 | None:intergenic | 25.0% |
| !!! | GTTTTCCAACATTTTAAGTT+TGG | + | tig0006806:56781-56800 | None:intergenic | 25.0% |
| ! | TTGTCAATAGCATATTATAG+CGG | - | tig0006806:56805-56824 | Msa1344340:CDS | 25.0% |
| !!! | TAAGTGTGTGTTTGTTTTAT+CGG | + | tig0006806:57145-57164 | None:intergenic | 25.0% |
| ! | TCTAAATCAAGTAGTTAACT+TGG | - | tig0006806:57337-57356 | Msa1344340:intron | 25.0% |
| ! | CTAAATCAAGTAGTTAACTT+GGG | - | tig0006806:57338-57357 | Msa1344340:intron | 25.0% |
| ! | TGGTAAACAATAAATACGTT+GGG | - | tig0006806:57423-57442 | Msa1344340:intron | 25.0% |
| ! | TAGGATTTGCATTATGATTA+AGG | + | tig0006806:57538-57557 | None:intergenic | 25.0% |
| ! | ACCCAATACAACAATATATA+CGG | + | tig0006806:57640-57659 | None:intergenic | 25.0% |
| ! | AAAACCAATCTCAACATTTA+TGG | + | tig0006806:57765-57784 | None:intergenic | 25.0% |
| ! | TTGGAAAGAAAACATCTTAA+TGG | - | tig0006806:57852-57871 | Msa1344340:intron | 25.0% |
| !!! | TGTATGCAAACTATTTTTCT+GGG | - | tig0006806:57953-57972 | Msa1344340:intron | 25.0% |
| !!! | TCTTTTCGCTTTATTGTATA+TGG | - | tig0006806:58145-58164 | Msa1344340:intron | 25.0% |
| ! | TTTATTGTATATGGATGGTT+TGG | - | tig0006806:58154-58173 | Msa1344340:intron | 25.0% |
| ! | TTCAAACTAAAGCCAATATT+TGG | - | tig0006806:58806-58825 | Msa1344340:intron | 25.0% |
| ! | TAATATCACAATGATCGATT+TGG | + | tig0006806:58976-58995 | None:intergenic | 25.0% |
| !! | ATTTTTGCAAATAGGTTAAC+AGG | - | tig0006806:59056-59075 | Msa1344340:intron | 25.0% |
| !! | TTTTTGCAAATAGGTTAACA+GGG | - | tig0006806:59057-59076 | Msa1344340:intron | 25.0% |
| ! | AATCTCGATGAGACATTTTA+GGG | + | tig0006806:56220-56239 | None:intergenic | 30.0% |
| CCATCTCTTCTATATTTCTT+AGG | + | tig0006806:56381-56400 | None:intergenic | 30.0% | |
| CCTAAGAAATATAGAAGAGA+TGG | - | tig0006806:56378-56397 | Msa1344340:three_prime_UTR | 30.0% | |
| !!! | CCAACATTTTAAGTTTGGTT+TGG | + | tig0006806:56776-56795 | None:intergenic | 30.0% |
| CCAAACCAAACTTAAAATGT+TGG | - | tig0006806:56773-56792 | Msa1344340:CDS | 30.0% | |
| TAAATGGATGTCTCACTAAA+TGG | + | tig0006806:57001-57020 | None:intergenic | 30.0% | |
| ACATCCATTTATGCAATGTT+TGG | - | tig0006806:57010-57029 | Msa1344340:CDS | 30.0% | |
| ATGTCCAAACATTGCATAAA+TGG | + | tig0006806:57017-57036 | None:intergenic | 30.0% | |
| !! | ATGTAGCTTCTTTAAAACCA+CGG | + | tig0006806:57079-57098 | None:intergenic | 30.0% |
| TTATCGGTGGAATAAACAAA+CGG | + | tig0006806:57129-57148 | None:intergenic | 30.0% | |
| !! | GTTGATAACATTGTTGGAAA+AGG | - | tig0006806:57186-57205 | Msa1344340:intron | 30.0% |
| TGATTTCTCTATTCACAAAG+AGG | - | tig0006806:57247-57266 | Msa1344340:intron | 30.0% | |
| ! | ACTACTTGATTTAGAGCTAA+AGG | + | tig0006806:57332-57351 | None:intergenic | 30.0% |
| TTTATTGTTTACCAGCTTGT+AGG | + | tig0006806:57417-57436 | None:intergenic | 30.0% | |
| CTGGTAAACAATAAATACGT+TGG | - | tig0006806:57422-57441 | Msa1344340:intron | 30.0% | |
| TAAACAATAAATACGTTGGG+AGG | - | tig0006806:57426-57445 | Msa1344340:intron | 30.0% | |
| TAACATCGAGAAAATGGAAA+TGG | + | tig0006806:57563-57582 | None:intergenic | 30.0% | |
| TGCCGTATATATTGTTGTAT+TGG | - | tig0006806:57635-57654 | Msa1344340:intron | 30.0% | |
| GCCGTATATATTGTTGTATT+GGG | - | tig0006806:57636-57655 | Msa1344340:intron | 30.0% | |
| AATCTCAACATTTATGGTGA+AGG | + | tig0006806:57759-57778 | None:intergenic | 30.0% | |
| TTCACCATAAATGTTGAGAT+TGG | - | tig0006806:57758-57777 | Msa1344340:intron | 30.0% | |
| AATGGACATTGAAGATAACT+TGG | - | tig0006806:57870-57889 | Msa1344340:intron | 30.0% | |
| !! | GTGTATGCAAACTATTTTTC+TGG | - | tig0006806:57952-57971 | Msa1344340:intron | 30.0% |
| !! | GTATGCAAACTATTTTTCTG+GGG | - | tig0006806:57954-57973 | Msa1344340:intron | 30.0% |
| !!! | TGTTTTAACAGCATCATGAA+TGG | - | tig0006806:58036-58055 | Msa1344340:intron | 30.0% |
| !! | GTTTTAACAGCATCATGAAT+GGG | - | tig0006806:58037-58056 | Msa1344340:intron | 30.0% |
| ! | TTTTAACAGCATCATGAATG+GGG | - | tig0006806:58038-58057 | Msa1344340:intron | 30.0% |
| ! | TTCGCTTTATTGTATATGGA+TGG | - | tig0006806:58149-58168 | Msa1344340:intron | 30.0% |
| !! | GTTTGGAATCGAAGAATTTT+GGG | + | tig0006806:58202-58221 | None:intergenic | 30.0% |
| !! | TGTTTGGAATCGAAGAATTT+TGG | + | tig0006806:58203-58222 | None:intergenic | 30.0% |
| ! | AAAGGTATATGCTCAAAGTA+AGG | - | tig0006806:58225-58244 | Msa1344340:intron | 30.0% |
| AAAGTAAGGAGAATAACCAA+AGG | - | tig0006806:58239-58258 | Msa1344340:intron | 30.0% | |
| ! | ATGGATTTTCATCAAGAGTA+AGG | - | tig0006806:58593-58612 | Msa1344340:intron | 30.0% |
| ! | TTTTCATCAAGAGTAAGGTA+TGG | - | tig0006806:58598-58617 | Msa1344340:intron | 30.0% |
| TTTCATCAAGAGTAAGGTAT+GGG | - | tig0006806:58599-58618 | Msa1344340:intron | 30.0% | |
| AGAGGAAGAGACAAATTTAA+TGG | - | tig0006806:58646-58665 | Msa1344340:intron | 30.0% | |
| TTCTCTGTTTGAGTCTTAAT+AGG | + | tig0006806:58688-58707 | None:intergenic | 30.0% | |
| ! | GAAACATGATTTGTATCAAG+AGG | - | tig0006806:58711-58730 | Msa1344340:intron | 30.0% |
| AGATTCTATTCCAAAGAATG+AGG | - | tig0006806:58741-58760 | Msa1344340:intron | 30.0% | |
| ATGACAAGCTTACCAAATAT+TGG | + | tig0006806:58821-58840 | None:intergenic | 30.0% | |
| AATATTTGGTAAGCTTGTCA+TGG | - | tig0006806:58820-58839 | Msa1344340:intron | 30.0% | |
| ! | TCATGAAAATTGGTAATCTC+TGG | + | tig0006806:58892-58911 | None:intergenic | 30.0% |
| !! | CTTCTTTGGGATTAGGATTT+AGG | + | tig0006806:56163-56182 | None:intergenic | 35.0% |
| CTAAATCCTAATCCCAAAGA+AGG | - | tig0006806:56161-56180 | Msa1344340:three_prime_UTR | 35.0% | |
| TGTGAATCGAATCCTTCTTT+GGG | + | tig0006806:56176-56195 | None:intergenic | 35.0% | |
| ATGTGAATCGAATCCTTCTT+TGG | + | tig0006806:56177-56196 | None:intergenic | 35.0% | |
| ! | GAATCTCGATGAGACATTTT+AGG | + | tig0006806:56221-56240 | None:intergenic | 35.0% |
| TGGTTCAGAATGATCATTTG+TGG | + | tig0006806:56439-56458 | None:intergenic | 35.0% | |
| TGATAATAAGAGCGAGATCT+TGG | + | tig0006806:56486-56505 | None:intergenic | 35.0% | |
| AAGATCTCGCTCTTATTATC+AGG | - | tig0006806:56485-56504 | Msa1344340:three_prime_UTR | 35.0% | |
| ATGTAGTTAGGAACAGAAGT+TGG | + | tig0006806:56566-56585 | None:intergenic | 35.0% | |
| !!! | TTTTATCTCATTCTGAGGTG+AGG | + | tig0006806:56917-56936 | None:intergenic | 35.0% |
| TTATGCAATGTTTGGACATG+TGG | - | tig0006806:57018-57037 | Msa1344340:CDS | 35.0% | |
| TGTATATCCCTGCATACAAT+TGG | - | tig0006806:57377-57396 | Msa1344340:intron | 35.0% | |
| AGTAGCTAACATCGAGAAAA+TGG | + | tig0006806:57569-57588 | None:intergenic | 35.0% | |
| ATGTTAGCTACTACAACATG+TGG | - | tig0006806:57577-57596 | Msa1344340:intron | 35.0% | |
| GTTACTTATTCGAGATTACC+AGG | - | tig0006806:57610-57629 | Msa1344340:intron | 35.0% | |
| AACAATATATACGGCAATCC+TGG | + | tig0006806:57631-57650 | None:intergenic | 35.0% | |
| ! | ACAACTGGAATTTGCTTTGA+CGG | - | tig0006806:57689-57708 | Msa1344340:intron | 35.0% |
| TGACCTCCTTATAAATCAAG+GGG | + | tig0006806:57798-57817 | None:intergenic | 35.0% | |
| CTGACCTCCTTATAAATCAA+GGG | + | tig0006806:57799-57818 | None:intergenic | 35.0% | |
| ACTGACCTCCTTATAAATCA+AGG | + | tig0006806:57800-57819 | None:intergenic | 35.0% | |
| GATGCTGTTAAAACATGCAT+TGG | + | tig0006806:58031-58050 | None:intergenic | 35.0% | |
| TCTTCGATTCCAAACAGAAA+AGG | - | tig0006806:58207-58226 | Msa1344340:intron | 35.0% | |
| ! | GAGCATATACCTTTTCTGTT+TGG | + | tig0006806:58219-58238 | None:intergenic | 35.0% |
| TAAGGAGAATAACCAAAGGT+TGG | - | tig0006806:58243-58262 | Msa1344340:intron | 35.0% | |
| TTCATCAAGAGTAAGGTATG+GGG | - | tig0006806:58600-58619 | Msa1344340:intron | 35.0% | |
| TTAAGACTCAAACAGAGAAG+TGG | - | tig0006806:58689-58708 | Msa1344340:intron | 35.0% | |
| ATCTGATCATCCTCATTCTT+TGG | + | tig0006806:58754-58773 | None:intergenic | 35.0% | |
| TTATTTCAACATGTGCCATG+TGG | - | tig0006806:58858-58877 | Msa1344340:intron | 35.0% | |
| TATTTCAACATGTGCCATGT+GGG | - | tig0006806:58859-58878 | Msa1344340:intron | 35.0% | |
| ! | GGCTGTCAATTTTTGCAAAT+AGG | - | tig0006806:59048-59067 | Msa1344340:intron | 35.0% |
| GTAGATAGTTTAGCAAAGCA+TGG | + | tig0006806:59155-59174 | None:intergenic | 35.0% | |
| AGTGACAGTGATACGTAGAA+AGG | - | tig0006806:56124-56143 | Msa1344340:three_prime_UTR | 40.0% | |
| !! | TCGAATCCTTCTTTGGGATT+AGG | + | tig0006806:56170-56189 | None:intergenic | 40.0% |
| GGATTCGATTCACATTCTTG+TGG | - | tig0006806:56182-56201 | Msa1344340:three_prime_UTR | 40.0% | |
| ! | GAAGAAGAAGAAGTGTACCT+TGG | + | tig0006806:56284-56303 | None:intergenic | 40.0% |
| GGTTGAGATGAATGTTTGGA+CGG | + | tig0006806:56462-56481 | None:intergenic | 40.0% | |
| TGGAGGTTGAGATGAATGTT+TGG | + | tig0006806:56466-56485 | None:intergenic | 40.0% | |
| TAATAAGAGCGAGATCTTGG+AGG | + | tig0006806:56483-56502 | None:intergenic | 40.0% | |
| TGCATACACCTGAAACTTGA+TGG | - | tig0006806:56593-56612 | Msa1344340:CDS | 40.0% | |
| TACACCTGAAACTTGATGGA+AGG | - | tig0006806:56597-56616 | Msa1344340:CDS | 40.0% | |
| ! | AACTTGATGGAAGGCATGTA+TGG | - | tig0006806:56606-56625 | Msa1344340:CDS | 40.0% |
| TTTACAGCTGTAGATGTGTC+CGG | - | tig0006806:56681-56700 | Msa1344340:CDS | 40.0% | |
| TCCTAAGAGCTTAATACCAG+CGG | + | tig0006806:56746-56765 | None:intergenic | 40.0% | |
| AGTAGAGCAACCTATTGTAG+CGG | - | tig0006806:56859-56878 | Msa1344340:CDS | 40.0% | |
| !!! | ACTATTTTGGCCGCTACAAT+AGG | + | tig0006806:56872-56891 | None:intergenic | 40.0% |
| TATTGTAGCGGCCAAAATAG+TGG | - | tig0006806:56871-56890 | Msa1344340:CDS | 40.0% | |
| TCTCACCTTTCAAAGCCATT+TGG | - | tig0006806:57053-57072 | Msa1344340:CDS | 40.0% | |
| !! | TCTTTAAAACCACGGCCAAA+TGG | + | tig0006806:57071-57090 | None:intergenic | 40.0% |
| !!! | GTGTGTGTTTGTTTTATCGG+TGG | + | tig0006806:57142-57161 | None:intergenic | 40.0% |
| ! | TTAGCTGCCATTTCACTATG+TGG | - | tig0006806:57162-57181 | Msa1344340:intron | 40.0% |
| ! | TAGCTGCCATTTCACTATGT+GGG | - | tig0006806:57163-57182 | Msa1344340:intron | 40.0% |
| ATCAACCCCACATAGTGAAA+TGG | + | tig0006806:57172-57191 | None:intergenic | 40.0% | |
| !! | TGTGGGGTTGATAACATTGT+TGG | - | tig0006806:57180-57199 | Msa1344340:intron | 40.0% |
| AAGCTGACCAATTGTATGCA+GGG | + | tig0006806:57387-57406 | None:intergenic | 40.0% | |
| TAAATACGTTGGGAGGAAAC+TGG | - | tig0006806:57433-57452 | Msa1344340:intron | 40.0% | |
| AAATACGTTGGGAGGAAACT+GGG | - | tig0006806:57434-57453 | Msa1344340:intron | 40.0% | |
| CCAAAGCAAACAGTAACGAA+TGG | + | tig0006806:57476-57495 | None:intergenic | 40.0% | |
| CCATTCGTTACTGTTTGCTT+TGG | - | tig0006806:57473-57492 | Msa1344340:intron | 40.0% | |
| AATTGCTCACAACTTGTACC+AGG | + | tig0006806:57509-57528 | None:intergenic | 40.0% | |
| CGAGAAAATGGAAATGGTGT+AGG | + | tig0006806:57557-57576 | None:intergenic | 40.0% | |
| TTAGCTACTACAACATGTGG+TGG | - | tig0006806:57580-57599 | Msa1344340:intron | 40.0% | |
| TAGCTACTACAACATGTGGT+GGG | - | tig0006806:57581-57600 | Msa1344340:intron | 40.0% | |
| CCTTATAAATCAAGGGGCAA+AGG | + | tig0006806:57792-57811 | None:intergenic | 40.0% | |
| CCTTTGCCCCTTGATTTATA+AGG | - | tig0006806:57789-57808 | Msa1344340:intron | 40.0% | |
| TTGCCCCTTGATTTATAAGG+AGG | - | tig0006806:57792-57811 | Msa1344340:intron | 40.0% | |
| !!! | AAACTATTTTTCTGGGGCGT+GGG | - | tig0006806:57960-57979 | Msa1344340:intron | 40.0% |
| AATAACCAAAGGTTGGAGAC+AGG | - | tig0006806:58250-58269 | Msa1344340:intron | 40.0% | |
| GCAAAGAGATGAGAAATCAC+TGG | - | tig0006806:58285-58304 | Msa1344340:intron | 40.0% | |
| ! | TGAGAAATCACTGGCTAAAC+TGG | - | tig0006806:58294-58313 | Msa1344340:intron | 40.0% |
| ! | AAATCACTGGCTAAACTGGA+TGG | - | tig0006806:58298-58317 | Msa1344340:intron | 40.0% |
| !! | GAAGAGACAGTTTTCGAGAA+AGG | - | tig0006806:58332-58351 | Msa1344340:intron | 40.0% |
| ATCTTCTTCTCCCTAAATGC+TGG | + | tig0006806:58391-58410 | None:intergenic | 40.0% | |
| TCCTTTCATTCCTTTCTGGA+GGG | + | tig0006806:58480-58499 | None:intergenic | 40.0% | |
| TTCCTTTCATTCCTTTCTGG+AGG | + | tig0006806:58481-58500 | None:intergenic | 40.0% | |
| TCCAGAAAGGAATGAAAGGA+AGG | - | tig0006806:58480-58499 | Msa1344340:intron | 40.0% | |
| TCCTTCCTTTCATTCCTTTC+TGG | + | tig0006806:58484-58503 | None:intergenic | 40.0% | |
| AGAAAGGAATGAAAGGAAGG+AGG | - | tig0006806:58483-58502 | Msa1344340:intron | 40.0% | |
| TCAGGTCTATCTAGATGGTT+AGG | + | tig0006806:58523-58542 | None:intergenic | 40.0% | |
| GATGAAAATCCATCCTTCCT+AGG | + | tig0006806:58586-58605 | None:intergenic | 40.0% | |
| TCATCAAGAGTAAGGTATGG+GGG | - | tig0006806:58601-58620 | Msa1344340:intron | 40.0% | |
| ATAGGTTAACAGGGTTATCC+AGG | - | tig0006806:59066-59085 | Msa1344340:intron | 40.0% | |
| TAGGTTAACAGGGTTATCCA+GGG | - | tig0006806:59067-59086 | Msa1344340:intron | 40.0% | |
| AGGGTTATCCCTAATGACAA+CGG | - | tig0006806:59086-59105 | Msa1344340:intron | 40.0% | |
| GATGAGGGAAAAAAGAACAC+AGG | + | tig0006806:59223-59242 | None:intergenic | 40.0% | |
| AGAATGACGACGCTTCGAAT+CGG | + | tig0006806:56246-56265 | None:intergenic | 45.0% | |
| TGAGATGAATGTTTGGACGG+TGG | + | tig0006806:56459-56478 | None:intergenic | 45.0% | |
| CATGCCTTCCATCAAGTTTC+AGG | + | tig0006806:56604-56623 | None:intergenic | 45.0% | |
| ! | TGGAAGGCATGTATGGTGTT+TGG | - | tig0006806:56613-56632 | Msa1344340:CDS | 45.0% |
| ACTGACACAAACATGGACAC+CGG | + | tig0006806:56703-56722 | None:intergenic | 45.0% | |
| !! | ACGAAGCACTGACACAAACA+TGG | + | tig0006806:56710-56729 | None:intergenic | 45.0% |
| TGTTTGTGTCAGTGCTTCGT+AGG | - | tig0006806:56710-56729 | Msa1344340:CDS | 45.0% | |
| TCCGCTGGTATTAAGCTCTT+AGG | - | tig0006806:56742-56761 | Msa1344340:CDS | 45.0% | |
| ! | AGCTGCCATTTCACTATGTG+GGG | - | tig0006806:57164-57183 | Msa1344340:intron | 45.0% |
| CAAGCTGACCAATTGTATGC+AGG | + | tig0006806:57388-57407 | None:intergenic | 45.0% | |
| !!! | CAAACTATTTTTCTGGGGCG+TGG | - | tig0006806:57959-57978 | Msa1344340:intron | 45.0% |
| ! | GCATTGGAAAGCATATACCG+AGG | + | tig0006806:58015-58034 | None:intergenic | 45.0% |
| TTTGACCTGTCTCCAACCTT+TGG | + | tig0006806:58258-58277 | None:intergenic | 45.0% | |
| ATGATCCAACACCTTCTGTG+AGG | - | tig0006806:58359-58378 | Msa1344340:intron | 45.0% | |
| !! | CTTTTCCTCACAGAAGGTGT+TGG | + | tig0006806:58367-58386 | None:intergenic | 45.0% |
| CAACACCTTCTGTGAGGAAA+AGG | - | tig0006806:58365-58384 | Msa1344340:intron | 45.0% | |
| TGAGGAAAAGGCCAGCATTT+AGG | - | tig0006806:58377-58396 | Msa1344340:intron | 45.0% | |
| GAGGAAAAGGCCAGCATTTA+GGG | - | tig0006806:58378-58397 | Msa1344340:intron | 45.0% | |
| TAGGGAGAAGAAGATCTCAG+TGG | - | tig0006806:58396-58415 | Msa1344340:intron | 45.0% | |
| ! | GATCTCAGTGGATTCAAGAG+AGG | - | tig0006806:58408-58427 | Msa1344340:intron | 45.0% |
| ! | TTTCATTCCTTTCTGGAGGG+TGG | + | tig0006806:58477-58496 | None:intergenic | 45.0% |
| ACCCTCCAGAAAGGAATGAA+AGG | - | tig0006806:58476-58495 | Msa1344340:intron | 45.0% | |
| GCTTCTCAGGTCTATCTAGA+TGG | + | tig0006806:58528-58547 | None:intergenic | 45.0% | |
| AATCCAACAAGCGAGAACCT+AGG | - | tig0006806:58566-58585 | Msa1344340:intron | 45.0% | |
| GGATGATCAGATTGCAAAGC+TGG | - | tig0006806:58762-58781 | Msa1344340:intron | 45.0% | |
| ! | TCTCTGGAAATTGTCCCACA+TGG | + | tig0006806:58876-58895 | None:intergenic | 45.0% |
| CTAAGTTCAGCATAGCACCT+GGG | - | tig0006806:59004-59023 | Msa1344340:intron | 45.0% | |
| GTTGTCATTAGGGATAACCC+TGG | + | tig0006806:59087-59106 | None:intergenic | 45.0% | |
| GGGTTATCCCTAATGACAAC+GGG | - | tig0006806:59087-59106 | Msa1344340:intron | 45.0% | |
| GGTTATCCCTAATGACAACG+GGG | - | tig0006806:59088-59107 | Msa1344340:intron | 45.0% | |
| GTTATCCCTAATGACAACGG+GGG | - | tig0006806:59089-59108 | Msa1344340:intron | 45.0% | |
| ATGATCCCCCGTTGTCATTA+GGG | + | tig0006806:59097-59116 | None:intergenic | 45.0% | |
| AATGATCCCCCGTTGTCATT+AGG | + | tig0006806:59098-59117 | None:intergenic | 45.0% | |
| !!! | ATTTAAATAAAATGATTTTA+CGG | + | tig0006806:56945-56964 | None:intergenic | 5.0% |
| !! | TATATATCAATATAAAATTA+AGG | + | tig0006806:58119-58138 | None:intergenic | 5.0% |
| CTAAGCTCGATCGTGAACCA+AGG | - | tig0006806:56264-56283 | Msa1344340:three_prime_UTR | 50.0% | |
| !! | CGTAGGTGTTGTTTATCCGC+TGG | - | tig0006806:56727-56746 | Msa1344340:CDS | 50.0% |
| ! | ATCTGCGGCAGCCACTATTT+TGG | + | tig0006806:56885-56904 | None:intergenic | 50.0% |
| GTGAGGCACAATAGCATCTG+CGG | + | tig0006806:56900-56919 | None:intergenic | 50.0% | |
| !! | CACGGCCAAATGGCTTTGAA+AGG | + | tig0006806:57061-57080 | None:intergenic | 50.0% |
| CTTTCAAAGCCATTTGGCCG+TGG | - | tig0006806:57059-57078 | Msa1344340:CDS | 50.0% | |
| GCTTGTAGCTACCTACAAGC+TGG | - | tig0006806:57403-57422 | Msa1344340:intron | 50.0% | |
| TGCTTTGGCTGTTAACTGCC+TGG | - | tig0006806:57488-57507 | Msa1344340:intron | 50.0% | |
| ! | CTACTACAACATGTGGTGGG+TGG | - | tig0006806:57584-57603 | Msa1344340:intron | 50.0% |
| ! | GCATATACCGAGGCACTTGA+AGG | + | tig0006806:58005-58024 | None:intergenic | 50.0% |
| TGAATGGGGCAATACTGTGC+AGG | - | tig0006806:58052-58071 | Msa1344340:intron | 50.0% | |
| !! | TTGGTCGAAGCACTGGTCAA+AGG | - | tig0006806:58075-58094 | Msa1344340:intron | 50.0% |
| !! | TGGTCGAAGCACTGGTCAAA+GGG | - | tig0006806:58076-58095 | Msa1344340:intron | 50.0% |
| ACTGGTCAAAGGGAAGCTGA+TGG | - | tig0006806:58086-58105 | Msa1344340:intron | 50.0% | |
| TTTACTGTCACTGTCGCAGC+TGG | + | tig0006806:58439-58458 | None:intergenic | 50.0% | |
| ! | TTTCTGGAGGGTGGCTAGTA+TGG | + | tig0006806:58468-58487 | None:intergenic | 50.0% |
| ATACTAGCCACCCTCCAGAA+AGG | - | tig0006806:58467-58486 | Msa1344340:intron | 50.0% | |
| ACCTGAGAAGCGAATTGCAG+AGG | - | tig0006806:58537-58556 | Msa1344340:intron | 50.0% | |
| TCCTCTGCAATTCGCTTCTC+AGG | + | tig0006806:58541-58560 | None:intergenic | 50.0% | |
| AGAAGCGAATTGCAGAGGAC+AGG | - | tig0006806:58542-58561 | Msa1344340:intron | 50.0% | |
| GAAGCGAATTGCAGAGGACA+GGG | - | tig0006806:58543-58562 | Msa1344340:intron | 50.0% | |
| CTTCCTAGGTTCTCGCTTGT+TGG | + | tig0006806:58572-58591 | None:intergenic | 50.0% | |
| CAACAAGCGAGAACCTAGGA+AGG | - | tig0006806:58570-58589 | Msa1344340:intron | 50.0% | |
| AAGCGAGAACCTAGGAAGGA+TGG | - | tig0006806:58574-58593 | Msa1344340:intron | 50.0% | |
| AGAGTAAGGTATGGGGGAAG+TGG | - | tig0006806:58607-58626 | Msa1344340:intron | 50.0% | |
| GGAGGCAATAGCAATCACAG+AGG | - | tig0006806:58628-58647 | Msa1344340:intron | 50.0% | |
| GCTAAGTTCAGCATAGCACC+TGG | - | tig0006806:59003-59022 | Msa1344340:intron | 50.0% | |
| TCTGTTGAGCACTTGAGCTC+TGG | - | tig0006806:59027-59046 | Msa1344340:intron | 50.0% | |
| ATGACGACGCTTCGAATCGG+AGG | + | tig0006806:56243-56262 | None:intergenic | 55.0% | |
| TGCATGTCGCGTTGCAGTCA+GGG | + | tig0006806:56837-56856 | None:intergenic | 55.0% | |
| TTGCATGTCGCGTTGCAGTC+AGG | + | tig0006806:56838-56857 | None:intergenic | 55.0% | |
| ! | ACCGAGGCACTTGAAGGCAT+GGG | + | tig0006806:57999-58018 | None:intergenic | 55.0% |
| ! | TACCGAGGCACTTGAAGGCA+TGG | + | tig0006806:58000-58019 | None:intergenic | 55.0% |
| TGGGGCAATACTGTGCAGGT+TGG | - | tig0006806:58056-58075 | Msa1344340:intron | 55.0% | |
| !!! | GCTGGCCTTTTCCTCACAGA+AGG | + | tig0006806:58373-58392 | None:intergenic | 55.0% |
| GTAAGGTATGGGGGAAGTGG+AGG | - | tig0006806:58610-58629 | Msa1344340:intron | 55.0% | |
| CTCAAGTGCTCAACAGACCC+AGG | + | tig0006806:59024-59043 | None:intergenic | 55.0% | |
| GCATGTCGCGTTGCAGTCAG+GGG | + | tig0006806:56836-56855 | None:intergenic | 60.0% | |
| ! | CCGAGGCACTTGAAGGCATG+GGG | + | tig0006806:57998-58017 | None:intergenic | 60.0% |
| CCCCATGCCTTCAAGTGCCT+CGG | - | tig0006806:57995-58014 | Msa1344340:intron | 60.0% | |
| !! | GTGCAGGTTGGTCGAAGCAC+TGG | - | tig0006806:58068-58087 | Msa1344340:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006806 | gene | 56115 | 59266 | 56115 | ID=Msa1344340;Name=Msa1344340 |
| tig0006806 | mRNA | 56115 | 59266 | 56115 | ID=Msa1344340-mRNA-1;Parent=Msa1344340;Name=Msa1344340-mRNA-1;_AED=0.26;_eAED=0.26;_QI=109|0.66|0.75|1|1|1|4|462|277 |
| tig0006806 | exon | 56115 | 57157 | 56115 | ID=Msa1344340-mRNA-1:exon:4500;Parent=Msa1344340-mRNA-1 |
| tig0006806 | exon | 57274 | 57334 | 57274 | ID=Msa1344340-mRNA-1:exon:4499;Parent=Msa1344340-mRNA-1 |
| tig0006806 | exon | 58875 | 59004 | 58875 | ID=Msa1344340-mRNA-1:exon:4498;Parent=Msa1344340-mRNA-1 |
| tig0006806 | exon | 59096 | 59266 | 59096 | ID=Msa1344340-mRNA-1:exon:4497;Parent=Msa1344340-mRNA-1 |
| tig0006806 | five_prime_UTR | 59158 | 59266 | 59158 | ID=Msa1344340-mRNA-1:five_prime_utr;Parent=Msa1344340-mRNA-1 |
| tig0006806 | CDS | 59096 | 59157 | 59096 | ID=Msa1344340-mRNA-1:cds;Parent=Msa1344340-mRNA-1 |
| tig0006806 | CDS | 58875 | 59004 | 58875 | ID=Msa1344340-mRNA-1:cds;Parent=Msa1344340-mRNA-1 |
| tig0006806 | CDS | 57274 | 57334 | 57274 | ID=Msa1344340-mRNA-1:cds;Parent=Msa1344340-mRNA-1 |
| tig0006806 | CDS | 56577 | 57157 | 56577 | ID=Msa1344340-mRNA-1:cds;Parent=Msa1344340-mRNA-1 |
| tig0006806 | three_prime_UTR | 56115 | 56576 | 56115 | ID=Msa1344340-mRNA-1:three_prime_utr;Parent=Msa1344340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
