Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1080800 | XP_013450218.1 | 98.178 | 439 | 8 | 0 | 1 | 439 | 1 | 439 | 0.0 | 881 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1080800 | sp|Q8RX01|Y3567_ARATH | 62.302 | 443 | 160 | 5 | 1 | 438 | 1 | 441 | 0.0 | 531 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1080800 | A0A072U4G5 | 98.178 | 439 | 8 | 0 | 1 | 439 | 1 | 439 | 0.0 | 881 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012080 | Msa1080800 | 0.804675 | 1.928169e-49 | -8.615850e-47 |
| Msa0014570 | Msa1080800 | 0.807206 | 5.660314e-50 | -8.615850e-47 |
| Msa0037160 | Msa1080800 | 0.806884 | 6.622455e-50 | -8.615850e-47 |
| Msa0037590 | Msa1080800 | -0.801714 | 7.905351e-49 | -8.615850e-47 |
| Msa0041720 | Msa1080800 | 0.820677 | 6.046112e-53 | -8.615850e-47 |
| Msa0046760 | Msa1080800 | 0.819064 | 1.413127e-52 | -8.615850e-47 |
| Msa0054750 | Msa1080800 | 0.802122 | 6.517619e-49 | -8.615850e-47 |
| Msa0079110 | Msa1080800 | 0.820548 | 6.473263e-53 | -8.615850e-47 |
| Msa0104700 | Msa1080800 | 0.800232 | 1.586958e-48 | -8.615850e-47 |
| Msa0620620 | Msa1080800 | 0.831934 | 1.259402e-55 | -8.615850e-47 |
| Msa0622100 | Msa1080800 | 0.805279 | 1.441226e-49 | -8.615850e-47 |
| Msa0629650 | Msa1080800 | 0.815797 | 7.690546e-52 | -8.615850e-47 |
| Msa0636020 | Msa1080800 | 0.804989 | 1.657127e-49 | -8.615850e-47 |
| Msa0654010 | Msa1080800 | 0.805902 | 1.066763e-49 | -8.615850e-47 |
| Msa0664760 | Msa1080800 | 0.805437 | 1.335532e-49 | -8.615850e-47 |
| Msa0677080 | Msa1080800 | 0.800321 | 1.522728e-48 | -8.615850e-47 |
| Msa0679700 | Msa1080800 | 0.814174 | 1.761847e-51 | -8.615850e-47 |
| Msa0698800 | Msa1080800 | 0.808707 | 2.712838e-50 | -8.615850e-47 |
| Msa0751850 | Msa1080800 | 0.808866 | 2.509004e-50 | -8.615850e-47 |
| Msa0770360 | Msa1080800 | 0.801575 | 8.439919e-49 | -8.615850e-47 |
| Msa0797970 | Msa1080800 | 0.804656 | 1.945713e-49 | -8.615850e-47 |
| Msa0800270 | Msa1080800 | 0.816397 | 5.648495e-52 | -8.615850e-47 |
| Msa0818160 | Msa1080800 | 0.803559 | 3.290773e-49 | -8.615850e-47 |
| Msa0824660 | Msa1080800 | 0.805898 | 1.068792e-49 | -8.615850e-47 |
| Msa0826220 | Msa1080800 | 0.812818 | 3.500579e-51 | -8.615850e-47 |
| Msa0826760 | Msa1080800 | 0.835743 | 1.404900e-56 | -8.615850e-47 |
| Msa0838260 | Msa1080800 | 0.801600 | 8.339701e-49 | -8.615850e-47 |
| Msa0131330 | Msa1080800 | 0.832037 | 1.187788e-55 | -8.615850e-47 |
| Msa0136070 | Msa1080800 | 0.835103 | 2.038575e-56 | -8.615850e-47 |
| Msa0136100 | Msa1080800 | 0.835956 | 1.240697e-56 | -8.615850e-47 |
| Msa0140500 | Msa1080800 | -0.812206 | 4.763622e-51 | -8.615850e-47 |
| Msa0154440 | Msa1080800 | 0.825467 | 4.614011e-54 | -8.615850e-47 |
| Msa0178510 | Msa1080800 | 0.800634 | 1.314807e-48 | -8.615850e-47 |
| Msa0178800 | Msa1080800 | 0.822355 | 2.476504e-53 | -8.615850e-47 |
| Msa0186770 | Msa1080800 | 0.805730 | 1.159222e-49 | -8.615850e-47 |
| Msa0189300 | Msa1080800 | 0.817226 | 3.681379e-52 | -8.615850e-47 |
| Msa0197660 | Msa1080800 | 0.809593 | 1.752417e-50 | -8.615850e-47 |
| Msa0205010 | Msa1080800 | 0.809110 | 2.224336e-50 | -8.615850e-47 |
| Msa0206790 | Msa1080800 | 0.800426 | 1.449418e-48 | -8.615850e-47 |
| Msa0217700 | Msa1080800 | 0.807703 | 4.440042e-50 | -8.615850e-47 |
| Msa0229170 | Msa1080800 | 0.815374 | 9.553662e-52 | -8.615850e-47 |
| Msa0231660 | Msa1080800 | 0.819720 | 1.001659e-52 | -8.615850e-47 |
| Msa0235120 | Msa1080800 | 0.801226 | 9.948246e-49 | -8.615850e-47 |
| Msa0365100 | Msa1080800 | 0.819192 | 1.321170e-52 | -8.615850e-47 |
| Msa0371250 | Msa1080800 | 0.803700 | 3.075403e-49 | -8.615850e-47 |
| Msa0382270 | Msa1080800 | 0.800474 | 1.416865e-48 | -8.615850e-47 |
| Msa0427100 | Msa1080800 | 0.801290 | 9.654108e-49 | -8.615850e-47 |
| Msa0427120 | Msa1080800 | 0.805770 | 1.136940e-49 | -8.615850e-47 |
| Msa0428050 | Msa1080800 | 0.860153 | 2.519446e-63 | -8.615850e-47 |
| Msa0428240 | Msa1080800 | 0.838463 | 2.833125e-57 | -8.615850e-47 |
| Msa0435690 | Msa1080800 | 0.811007 | 8.683440e-51 | -8.615850e-47 |
| Msa0474390 | Msa1080800 | 0.845541 | 3.807303e-59 | -8.615850e-47 |
| Msa0474590 | Msa1080800 | 0.864405 | 1.244982e-64 | -8.615850e-47 |
| Msa0479170 | Msa1080800 | 0.811612 | 6.418182e-51 | -8.615850e-47 |
| Msa0479200 | Msa1080800 | 0.822104 | 2.831317e-53 | -8.615850e-47 |
| Msa0994390 | Msa1080800 | 0.830910 | 2.249971e-55 | -8.615850e-47 |
| Msa1031930 | Msa1080800 | 0.810062 | 1.389216e-50 | -8.615850e-47 |
| Msa1038080 | Msa1080800 | 0.811763 | 5.950292e-51 | -8.615850e-47 |
| Msa1040840 | Msa1080800 | 0.842398 | 2.649988e-58 | -8.615850e-47 |
| Msa1064250 | Msa1080800 | 0.807628 | 4.606356e-50 | -8.615850e-47 |
| Msa1080640 | Msa1080800 | 0.811618 | 6.397980e-51 | -8.615850e-47 |
| Msa1080800 | Msa1105500 | 0.802458 | 5.557220e-49 | -8.615850e-47 |
| Msa1080800 | Msa1118940 | 0.939711 | 8.024058e-100 | -8.615850e-47 |
| Msa1080800 | Msa1126450 | 0.821622 | 3.660420e-53 | -8.615850e-47 |
| Msa1080800 | Msa1163540 | 0.801781 | 7.656835e-49 | -8.615850e-47 |
| Msa1080800 | Msa1164590 | 0.802602 | 5.189770e-49 | -8.615850e-47 |
| Msa1080800 | Msa1206310 | 0.819192 | 1.321289e-52 | -8.615850e-47 |
| Msa1080800 | Msa1206360 | 0.829528 | 4.894243e-55 | -8.615850e-47 |
| Msa1080800 | Msa1206850 | 0.824671 | 7.113753e-54 | -8.615850e-47 |
| Msa1080800 | Msa1216350 | 0.806947 | 6.423188e-50 | -8.615850e-47 |
| Msa1080800 | Msa1219810 | 0.834240 | 3.359796e-56 | -8.615850e-47 |
| Msa1080800 | Msa1243870 | 0.802752 | 4.832124e-49 | -8.615850e-47 |
| Msa1080800 | Msa1257130 | 0.804768 | 1.843645e-49 | -8.615850e-47 |
| Msa1080800 | Msa1263020 | 0.812893 | 3.370730e-51 | -8.615850e-47 |
| Msa1080800 | Msa1267060 | 0.812967 | 3.247730e-51 | -8.615850e-47 |
| Msa1080800 | Msa1280420 | 0.806772 | 6.992816e-50 | -8.615850e-47 |
| Msa1080800 | Msa1286610 | 0.827660 | 1.383864e-54 | -8.615850e-47 |
| Msa1080800 | Msa1306560 | 0.800129 | 1.665610e-48 | -8.615850e-47 |
| Msa1080800 | Msa1344340 | 0.817677 | 2.912575e-52 | -8.615850e-47 |
| Msa1080800 | Msa1358670 | 0.814514 | 1.481850e-51 | -8.615850e-47 |
| Msa1080800 | Msa1360980 | 0.808696 | 2.728048e-50 | -8.615850e-47 |
| Msa1080800 | Msa1370620 | 0.932562 | 7.064556e-95 | -8.615850e-47 |
| Msa1080800 | Msa1375680 | 0.811366 | 7.257191e-51 | -8.615850e-47 |
| Msa1080800 | Msa1376130 | 0.815741 | 7.912453e-52 | -8.615850e-47 |
| Msa1080800 | Msa1377570 | 0.823017 | 1.736582e-53 | -8.615850e-47 |
| Msa1080800 | Msa1384870 | 0.856489 | 3.108254e-62 | -8.615850e-47 |
| Msa1080800 | Msa1385890 | 0.809301 | 2.024555e-50 | -8.615850e-47 |
| Msa1080800 | Msa1386710 | 0.812791 | 3.549899e-51 | -8.615850e-47 |
| Msa1080800 | Msa1401530 | 0.810558 | 1.086135e-50 | -8.615850e-47 |
| Msa1080800 | Msa1423350 | 0.820063 | 8.358331e-53 | -8.615850e-47 |
| Msa1080800 | Msa1424780 | 0.823379 | 1.429744e-53 | -8.615850e-47 |
| Msa1080800 | Msa1435070 | 0.806352 | 8.575688e-50 | -8.615850e-47 |
| Msa1080800 | Msa1439700 | 0.807497 | 4.910899e-50 | -8.615850e-47 |
| Msa1080800 | Msa1440310 | 0.806123 | 9.584062e-50 | -8.615850e-47 |
| Msa1080800 | Msa1445390 | -0.811564 | 6.573790e-51 | -8.615850e-47 |
| Msa1080800 | Msa1449340 | -0.821357 | 4.214323e-53 | -8.615850e-47 |
| Msa1080800 | Msa1466090 | 0.800670 | 1.292266e-48 | -8.615850e-47 |
| Msa0239800 | Msa1080800 | 0.814491 | 1.499217e-51 | -8.615850e-47 |
| Msa0241470 | Msa1080800 | 0.830601 | 2.678580e-55 | -8.615850e-47 |
| Msa0247170 | Msa1080800 | 0.807279 | 5.462152e-50 | -8.615850e-47 |
| Msa0257520 | Msa1080800 | 0.804068 | 2.579179e-49 | -8.615850e-47 |
| Msa0265380 | Msa1080800 | 0.814736 | 1.323267e-51 | -8.615850e-47 |
| Msa0268090 | Msa1080800 | 0.846303 | 2.363418e-59 | -8.615850e-47 |
| Msa0270170 | Msa1080800 | -0.800986 | 1.114267e-48 | -8.615850e-47 |
| Msa0277450 | Msa1080800 | 0.807348 | 5.282289e-50 | -8.615850e-47 |
| Msa0279220 | Msa1080800 | 0.810983 | 8.785759e-51 | -8.615850e-47 |
| Msa0279240 | Msa1080800 | 0.812057 | 5.135325e-51 | -8.615850e-47 |
| Msa0281430 | Msa1080800 | 0.809856 | 1.538629e-50 | -8.615850e-47 |
| Msa0288730 | Msa1080800 | 0.809726 | 1.640718e-50 | -8.615850e-47 |
| Msa0292120 | Msa1080800 | 0.805614 | 1.226004e-49 | -8.615850e-47 |
| Msa0303360 | Msa1080800 | 0.816809 | 4.565406e-52 | -8.615850e-47 |
| Msa0309750 | Msa1080800 | 0.804087 | 2.555834e-49 | -8.615850e-47 |
| Msa0309770 | Msa1080800 | 0.806090 | 9.737368e-50 | -8.615850e-47 |
| Msa0317510 | Msa1080800 | 0.810941 | 8.972969e-51 | -8.615850e-47 |
| Msa0318980 | Msa1080800 | 0.806110 | 9.644499e-50 | -8.615850e-47 |
| Msa0326520 | Msa1080800 | 0.819180 | 1.329503e-52 | -8.615850e-47 |
| Msa0342010 | Msa1080800 | 0.804964 | 1.677346e-49 | -8.615850e-47 |
| Msa0517090 | Msa1080800 | 0.805816 | 1.112006e-49 | -8.615850e-47 |
| Msa0518810 | Msa1080800 | 0.836348 | 9.866022e-57 | -8.615850e-47 |
| Msa0532540 | Msa1080800 | 0.828782 | 7.424534e-55 | -8.615850e-47 |
| Msa0532980 | Msa1080800 | 0.814860 | 1.242492e-51 | -8.615850e-47 |
| Msa0545060 | Msa1080800 | 0.811918 | 5.504635e-51 | -8.615850e-47 |
| Msa0586850 | Msa1080800 | 0.813708 | 2.232877e-51 | -8.615850e-47 |
| Msa0589390 | Msa1080800 | 0.830904 | 2.257987e-55 | -8.615850e-47 |
| Msa0600410 | Msa1080800 | -0.808774 | 2.625199e-50 | -8.615850e-47 |
| Msa0857370 | Msa1080800 | 0.805544 | 1.268043e-49 | -8.615850e-47 |
| Msa0863930 | Msa1080800 | 0.806334 | 8.650468e-50 | -8.615850e-47 |
| Msa0865570 | Msa1080800 | 0.805290 | 1.433368e-49 | -8.615850e-47 |
| Msa0865890 | Msa1080800 | 0.826919 | 2.082522e-54 | -8.615850e-47 |
| Msa0895790 | Msa1080800 | 0.819816 | 9.522508e-53 | -8.615850e-47 |
| Msa0901320 | Msa1080800 | 0.812871 | 3.408427e-51 | -8.615850e-47 |
| Msa0931720 | Msa1080800 | 0.816616 | 5.046241e-52 | -8.615850e-47 |
| Msa0942550 | Msa1080800 | -0.811532 | 6.678191e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1080800 | MtrunA17_Chr7g0267491 | 98.178 | 439 | 8 | 0 | 1 | 439 | 1 | 439 | 0.0 | 881 |
| Msa1080800 | MtrunA17_Chr3g0080931 | 40.529 | 227 | 131 | 3 | 202 | 428 | 1 | 223 | 2.38e-54 | 181 |
| Msa1080800 | MtrunA17_Chr4g0034941 | 24.130 | 460 | 261 | 17 | 13 | 421 | 50 | 472 | 2.74e-17 | 84.0 |
| Msa1080800 | MtrunA17_Chr8g0387311 | 23.349 | 424 | 272 | 14 | 14 | 421 | 185 | 571 | 1.11e-16 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1080800 | AT3G05675.2 | 62.302 | 443 | 160 | 5 | 1 | 438 | 1 | 441 | 0.0 | 531 |
| Msa1080800 | AT3G05675.1 | 62.302 | 443 | 160 | 5 | 1 | 438 | 1 | 441 | 0.0 | 531 |
| Msa1080800 | AT3G05675.3 | 62.302 | 443 | 160 | 5 | 1 | 438 | 1 | 441 | 0.0 | 531 |
| Msa1080800 | AT4G10800.1 | 41.852 | 270 | 139 | 6 | 167 | 428 | 10 | 269 | 2.31e-62 | 204 |
| Msa1080800 | AT4G10800.2 | 41.767 | 249 | 132 | 5 | 183 | 428 | 8 | 246 | 1.28e-57 | 191 |
| Msa1080800 | AT1G63850.1 | 23.341 | 437 | 270 | 15 | 14 | 427 | 135 | 529 | 2.61e-17 | 84.7 |
Find 137 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATACGTGCATATGTCATTT+TGG | 0.220195 | 7_2:+80481533 | None:intergenic |
| AATTTAAACTTCAATCTTCT+TGG | 0.224181 | 7_2:+80481875 | None:intergenic |
| CCTATACTAATCGACGATTT+AGG | 0.238185 | 7_2:-80482124 | Msa1080800:three_prime_UTR |
| AGATATCATTAAGGTGTTTC+TGG | 0.249458 | 7_2:-80481737 | Msa1080800:three_prime_UTR |
| TATGAAGGTAAAAGATAAAA+TGG | 0.267207 | 7_2:-80481946 | Msa1080800:three_prime_UTR |
| CAAGAATCAAAGGGATCTTA+TGG | 0.269639 | 7_2:+80484893 | None:intergenic |
| GAGAAGGATATCTGTGTAAT+TGG | 0.301905 | 7_2:-80483708 | Msa1080800:CDS |
| AAAGATTGTTATTATATCAT+TGG | 0.312095 | 7_2:+80484777 | None:intergenic |
| ATCATTCTTGCATTGCCATC+AGG | 0.346115 | 7_2:-80482583 | Msa1080800:CDS |
| CCATGACAAATCAGTCAAAT+AGG | 0.348445 | 7_2:+80482957 | None:intergenic |
| TTACATTGATTTAATGTGAA+TGG | 0.362563 | 7_2:+80482249 | None:intergenic |
| ACCGAGACGTTCCCTACTTC+AGG | 0.368218 | 7_2:+80482985 | None:intergenic |
| ATAGAGGGTAGATATCATTA+AGG | 0.372203 | 7_2:-80481746 | Msa1080800:three_prime_UTR |
| TTTGAAAATTGTACCGAGAA+TGG | 0.375149 | 7_2:-80483301 | Msa1080800:CDS |
| GGATGCTGCGTTGCTTAAAA+TGG | 0.377981 | 7_2:-80482647 | Msa1080800:CDS |
| ATATGTTTCTGATAGCTAAC+TGG | 0.387088 | 7_2:+80483235 | None:intergenic |
| TGACTGAGGCATTCGAAGTA+TGG | 0.393117 | 7_2:-80482501 | Msa1080800:CDS |
| TGCATTGCCATCAGGGGATC+AGG | 0.394170 | 7_2:-80482575 | Msa1080800:CDS |
| CTGATAGCTAACTGGTTAAC+CGG | 0.398560 | 7_2:+80483243 | None:intergenic |
| GGTTGGAAAACGAGAATATA+CGG | 0.406032 | 7_2:-80482534 | Msa1080800:CDS |
| TTATGGCTTACGGCTTGTGC+TGG | 0.410899 | 7_2:+80484910 | None:intergenic |
| GCCAACTGCGAAACGTCTTA+AGG | 0.411212 | 7_2:-80482740 | Msa1080800:CDS |
| CAAAGGGATCTTATGGCTTA+CGG | 0.414807 | 7_2:+80484900 | None:intergenic |
| TTGAAAATTGTACCGAGAAT+GGG | 0.421104 | 7_2:-80483300 | Msa1080800:CDS |
| CTGATCGGCTATCTGAGAAT+TGG | 0.421865 | 7_2:-80483578 | Msa1080800:CDS |
| CGCAAGAAGGTCGAGATGAT+TGG | 0.428744 | 7_2:-80483647 | Msa1080800:CDS |
| AACTTGCTTCTTGATTTCAA+TGG | 0.429536 | 7_2:-80484597 | Msa1080800:exon |
| GGCAGAATCAATCACTGGTT+TGG | 0.436374 | 7_2:+80482684 | None:intergenic |
| GAGAAGACTCTCATTGTTAG+AGG | 0.440113 | 7_2:-80482455 | Msa1080800:CDS |
| TGGCGAAATGTGGCAATCTC+TGG | 0.442679 | 7_2:-80482623 | Msa1080800:CDS |
| AACCCTCCACGGTGTGTTGT+GGG | 0.456513 | 7_2:+80481616 | None:intergenic |
| TTGCCATCAGGGGATCAGGC+AGG | 0.460011 | 7_2:-80482571 | Msa1080800:CDS |
| AACCTTTGATGTTACCTCAA+TGG | 0.460071 | 7_2:+80482795 | None:intergenic |
| TGGCCAACTTGTCAGATACT+AGG | 0.460340 | 7_2:-80483558 | Msa1080800:CDS |
| GATTTCAGATCATTCATTGC+CGG | 0.460656 | 7_2:+80483174 | None:intergenic |
| CAAAAGGTAATTTATGTAGC+TGG | 0.466727 | 7_2:-80481833 | Msa1080800:three_prime_UTR |
| TGATGATAATATAAAATATG+AGG | 0.467539 | 7_2:-80483088 | Msa1080800:CDS |
| TCGAATGCCTCAGTCAGGTC+TGG | 0.468523 | 7_2:+80482508 | None:intergenic |
| TCAGGACTAGCTTTGCAACT+TGG | 0.470320 | 7_2:+80481495 | None:intergenic |
| CTTCTGTACGTTGTGGTCGA+TGG | 0.471656 | 7_2:-80483468 | Msa1080800:CDS |
| AAGAATGATAGAGACAAAAC+TGG | 0.473112 | 7_2:+80482597 | None:intergenic |
| CCTATTTGACTGATTTGTCA+TGG | 0.473152 | 7_2:-80482957 | Msa1080800:CDS |
| CGTAAGCATTATGCTGTGTT+GGG | 0.478656 | 7_2:+80482072 | None:intergenic |
| CCTAAATCGTCGATTAGTAT+AGG | 0.482262 | 7_2:+80482124 | None:intergenic |
| GCAGAATCACTTCCTGAAGT+AGG | 0.485646 | 7_2:-80482997 | Msa1080800:CDS |
| ACCTTAAGACGTTTCGCAGT+TGG | 0.488387 | 7_2:+80482739 | None:intergenic |
| TGCTACATCGTCGCCTCCAC+CGG | 0.488415 | 7_2:-80483193 | Msa1080800:CDS |
| CTATTTGACTGATTTGTCAT+GGG | 0.491380 | 7_2:-80482956 | Msa1080800:CDS |
| GTATGGATCTTGAAGAAGTT+AGG | 0.495610 | 7_2:+80484729 | None:intergenic |
| TTTCTTGGTTTGAACTTCGA+AGG | 0.495655 | 7_2:-80481978 | Msa1080800:three_prime_UTR |
| ATGAGGATTTCAAGAATCAA+AGG | 0.495741 | 7_2:+80484883 | None:intergenic |
| TATATCATTGGAATTGAGCA+TGG | 0.499090 | 7_2:+80484789 | None:intergenic |
| AGATCATTCATTGCCGGTGG+AGG | 0.499953 | 7_2:+80483180 | None:intergenic |
| ATGGTTCAGTTGATGATTTG+TGG | 0.499974 | 7_2:-80483449 | Msa1080800:CDS |
| ATCAAATTGAGCGGGTTACT+CGG | 0.504261 | 7_2:+80482409 | None:intergenic |
| TATCATCAGCGATCAACAAA+GGG | 0.504276 | 7_2:+80483103 | None:intergenic |
| GGTTTGGTAACCCTCACAAA+TGG | 0.504480 | 7_2:+80482700 | None:intergenic |
| TATCCTAGCTAGACTTCAAC+CGG | 0.505035 | 7_2:-80483262 | Msa1080800:CDS |
| ACGTAAGCATTATGCTGTGT+TGG | 0.505379 | 7_2:+80482071 | None:intergenic |
| CTCTTGACAGGAAAGGAGAA+AGG | 0.508362 | 7_2:-80482025 | Msa1080800:three_prime_UTR |
| AATTAAGGATAAGGAAGAGA+AGG | 0.512406 | 7_2:-80483724 | Msa1080800:intron |
| TGATTTAATGTGAATGGAGA+TGG | 0.514716 | 7_2:+80482255 | None:intergenic |
| GAGTCTTCTCCTTGCAACCT+TGG | 0.515051 | 7_2:+80482468 | None:intergenic |
| AATAAAACATGTGATTAGTG+TGG | 0.516680 | 7_2:-80481374 | Msa1080800:three_prime_UTR |
| TCAGTTGATGATTTGTGGCA+TGG | 0.516798 | 7_2:-80483444 | Msa1080800:CDS |
| CACAACACACCGTGGAGGGT+TGG | 0.519921 | 7_2:-80481614 | Msa1080800:three_prime_UTR |
| ATACTTCGAATGCCTCAGTC+AGG | 0.520495 | 7_2:+80482503 | None:intergenic |
| TCAGCTTGTAATCCCATTCT+CGG | 0.521850 | 7_2:+80483288 | None:intergenic |
| CGAAGGAGCATCATATATGA+AGG | 0.525772 | 7_2:-80481961 | Msa1080800:three_prime_UTR |
| TGCTGCGTGTGTGAAATACT+TGG | 0.525981 | 7_2:-80483361 | Msa1080800:CDS |
| GTCACAATGTAACCTGCAAA+AGG | 0.528041 | 7_2:-80481849 | Msa1080800:three_prime_UTR |
| ATGGGAAGAGAGTGAAGAGG+AGG | 0.529090 | 7_2:-80483328 | Msa1080800:CDS |
| TCATTCTTGCATTGCCATCA+GGG | 0.532419 | 7_2:-80482582 | Msa1080800:CDS |
| TGCCATCAGGGGATCAGGCA+GGG | 0.532443 | 7_2:-80482570 | Msa1080800:CDS |
| CAGAATCACTTCCTGAAGTA+GGG | 0.535661 | 7_2:-80482996 | Msa1080800:CDS |
| ATAAAACATGTGATTAGTGT+GGG | 0.540166 | 7_2:-80481373 | Msa1080800:three_prime_UTR |
| GACATATGCACGTATTTGCA+TGG | 0.540818 | 7_2:-80481526 | Msa1080800:three_prime_UTR |
| AATTGTGGCTTCCATTTGTG+AGG | 0.547715 | 7_2:-80482711 | Msa1080800:CDS |
| TATCAGAAACATATTTCTCT+CGG | 0.549893 | 7_2:-80483226 | Msa1080800:CDS |
| ACTGTACGCAGCAGAGATAG+AGG | 0.549968 | 7_2:-80481762 | Msa1080800:three_prime_UTR |
| TGAGTACTGGTTTGATGCAT+CGG | 0.555681 | 7_2:-80482890 | Msa1080800:CDS |
| TGAGGATTTCAAGAATCAAA+GGG | 0.559190 | 7_2:+80484884 | None:intergenic |
| GATAAAGTTGCGAGCCATTG+AGG | 0.559973 | 7_2:-80482809 | Msa1080800:CDS |
| GTTATAGATCCAAGGTTGCA+AGG | 0.561101 | 7_2:-80482477 | Msa1080800:CDS |
| TGAAGAAACTCAAGCTATAG+TGG | 0.563243 | 7_2:+80481642 | None:intergenic |
| GAACCTAGTATCTGACAAGT+TGG | 0.564864 | 7_2:+80483555 | None:intergenic |
| CCACAACATCACTAGTTGAT+CGG | 0.567045 | 7_2:+80483682 | None:intergenic |
| TAACCGGTTGAAGTCTAGCT+AGG | 0.567773 | 7_2:+80483259 | None:intergenic |
| GGGAACACATCAAATTGAGC+GGG | 0.568489 | 7_2:+80482401 | None:intergenic |
| TACTAATCGACGATTTAGGT+TGG | 0.572152 | 7_2:-80482120 | Msa1080800:three_prime_UTR |
| GTCATGGCAGAATCAATCAC+TGG | 0.572683 | 7_2:+80482679 | None:intergenic |
| TTCAGATCATTCATTGCCGG+TGG | 0.572901 | 7_2:+80483177 | None:intergenic |
| TATCAGCTTCCAACCCTCCA+CGG | 0.575299 | 7_2:+80481605 | None:intergenic |
| AGCCATTGAGGTAACATCAA+AGG | 0.577241 | 7_2:-80482797 | Msa1080800:CDS |
| AGCTGTTATTTGTTTGTGTG+AGG | 0.580734 | 7_2:-80481922 | Msa1080800:three_prime_UTR |
| TAACACAAGGAGCTGTATGT+AGG | 0.585319 | 7_2:-80481709 | Msa1080800:three_prime_UTR |
| GTGATATTCTCTCCTTCACT+AGG | 0.587054 | 7_2:+80482335 | None:intergenic |
| CATGGTGTTAGAAATGCTCT+TGG | 0.588296 | 7_2:-80483426 | Msa1080800:CDS |
| GGTTGAAGTCTAGCTAGGAT+AGG | 0.590203 | 7_2:+80483264 | None:intergenic |
| CATTCTTGCATTGCCATCAG+GGG | 0.594583 | 7_2:-80482581 | Msa1080800:CDS |
| AGCCCTGCCTGATCCCCTGA+TGG | 0.596176 | 7_2:+80482568 | None:intergenic |
| TTATCATCAGCGATCAACAA+AGG | 0.597255 | 7_2:+80483102 | None:intergenic |
| GTGAGGCTACGCACGCAAGA+AGG | 0.597661 | 7_2:-80483660 | Msa1080800:CDS |
| TACCCACAACACACCGTGGA+GGG | 0.603325 | 7_2:-80481618 | Msa1080800:three_prime_UTR |
| AGTATGGTGTTATAGATCCA+AGG | 0.604280 | 7_2:-80482485 | Msa1080800:CDS |
| CTAAACTTCATGCCTAGTGA+AGG | 0.604938 | 7_2:-80482347 | Msa1080800:three_prime_UTR |
| AATACTTGGAAGCAATGACA+TGG | 0.605753 | 7_2:-80483347 | Msa1080800:CDS |
| TATTCGACTTCTGTACGTTG+TGG | 0.606306 | 7_2:-80483475 | Msa1080800:CDS |
| CTGTACGCAGCAGAGATAGA+GGG | 0.611432 | 7_2:-80481761 | Msa1080800:three_prime_UTR |
| CGGGAACACATCAAATTGAG+CGG | 0.618971 | 7_2:+80482400 | None:intergenic |
| GCTGCGTTGCTTAAAATGGA+TGG | 0.619104 | 7_2:-80482643 | Msa1080800:CDS |
| GAAGTCGAATAAAGTTTACA+TGG | 0.621468 | 7_2:+80483487 | None:intergenic |
| ACTGGTTTGATGCATCGGAA+AGG | 0.623195 | 7_2:-80482885 | Msa1080800:CDS |
| TATCAATGAGTTGTTAAACC+CGG | 0.624215 | 7_2:+80483038 | None:intergenic |
| TAACTTCTTCAAGATCCATA+CGG | 0.625052 | 7_2:-80484727 | Msa1080800:intron |
| CCGATCAACTAGTGATGTTG+TGG | 0.627570 | 7_2:-80483682 | Msa1080800:CDS |
| AGCATCCTCACAATTCGTCA+TGG | 0.633088 | 7_2:+80482663 | None:intergenic |
| TCCTGAAGTAGGGAACGTCT+CGG | 0.633628 | 7_2:-80482986 | Msa1080800:CDS |
| GAGGCGACGATGTAGCAAAA+CGG | 0.638217 | 7_2:+80483199 | None:intergenic |
| TCATTGATACATTTACTCTG+TGG | 0.641194 | 7_2:-80483024 | Msa1080800:CDS |
| ATTGTGGCTTCCATTTGTGA+GGG | 0.644880 | 7_2:-80482710 | Msa1080800:CDS |
| TTAGGTTGGTGAGTGTGACA+TGG | 0.646783 | 7_2:-80482106 | Msa1080800:three_prime_UTR |
| TACTTCAGGAAGTGATTCTG+CGG | 0.651160 | 7_2:+80482999 | None:intergenic |
| TTGGAATTGAGCATGGAACA+AGG | 0.651504 | 7_2:+80484796 | None:intergenic |
| TTAAAATGGATGGCGAAATG+TGG | 0.673164 | 7_2:-80482633 | Msa1080800:CDS |
| ATACTTGGAAGCAATGACAT+GGG | 0.673251 | 7_2:-80483346 | Msa1080800:CDS |
| CTACCCACAACACACCGTGG+AGG | 0.674683 | 7_2:-80481619 | Msa1080800:three_prime_UTR |
| TGCTTACGTATGATGTCCTG+TGG | 0.678113 | 7_2:-80482057 | Msa1080800:three_prime_UTR |
| GACATGGGAAGAGAGTGAAG+AGG | 0.683633 | 7_2:-80483331 | Msa1080800:CDS |
| AAAGTACTTGAACTTGAACA+AGG | 0.686492 | 7_2:-80482856 | Msa1080800:CDS |
| ATCATCAGCGATCAACAAAG+GGG | 0.702082 | 7_2:+80483104 | None:intergenic |
| TTCTGCCATGACGAATTGTG+AGG | 0.703220 | 7_2:-80482668 | Msa1080800:CDS |
| TCACTACCCACAACACACCG+TGG | 0.723118 | 7_2:-80481622 | Msa1080800:three_prime_UTR |
| CAACTAGTGATGTTGTGGTG+AGG | 0.729111 | 7_2:-80483677 | Msa1080800:CDS |
| ACGGTATCCAGACCTGACTG+AGG | 0.735150 | 7_2:-80482515 | Msa1080800:CDS |
| ACTTGAGTACATGCTAACTG+AGG | 0.740737 | 7_2:-80483136 | Msa1080800:CDS |
| GTTTCTGGTAGAATAACACA+AGG | 0.752486 | 7_2:-80481722 | Msa1080800:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGAAATTATAAAAACA+AGG | + | chr7_2:80481650-80481669 | None:intergenic | 10.0% |
| !!! | GTTTTTATAATTTCATTTTT+AGG | - | chr7_2:80481651-80481670 | Msa1080800:three_prime_UTR | 10.0% |
| !!! | AAAGATTGTTATTATATCAT+TGG | + | chr7_2:80481514-80481533 | None:intergenic | 15.0% |
| !!! | TCAATAATAATAAATGGATT+TGG | + | chr7_2:80482086-80482105 | None:intergenic | 15.0% |
| !! | TTCACTTCAATAATAATAAA+TGG | + | chr7_2:80482092-80482111 | None:intergenic | 15.0% |
| !! | TGATGATAATATAAAATATG+AGG | - | chr7_2:80483200-80483219 | Msa1080800:CDS | 15.0% |
| !! | AATTCTTTCATATCTTCAAT+TGG | - | chr7_2:80482052-80482071 | Msa1080800:three_prime_UTR | 20.0% |
| !! | AATATGTTTACTCTCAATTT+AGG | + | chr7_2:80482182-80482201 | None:intergenic | 20.0% |
| !! | TATCATTACTCCTAAATTTA+TGG | - | chr7_2:80482356-80482375 | Msa1080800:three_prime_UTR | 20.0% |
| !! | TAAAAGATTGTAAAAAACCT+CGG | + | chr7_2:80482486-80482505 | None:intergenic | 20.0% |
| !! | TATTACTAATTACAGATAAG+AGG | + | chr7_2:80482530-80482549 | None:intergenic | 20.0% |
| !! | AAGATTATCCTCTTTAATTA+AGG | - | chr7_2:80482549-80482568 | Msa1080800:CDS | 20.0% |
| !!! | AGAATAGTACTTAAATTTTG+AGG | + | chr7_2:80483923-80483942 | None:intergenic | 20.0% |
| !!! | TTACATTGATTTAATGTGAA+TGG | + | chr7_2:80484042-80484061 | None:intergenic | 20.0% |
| !! | TATGAAGGTAAAAGATAAAA+TGG | - | chr7_2:80484342-80484361 | Msa1080800:intron | 20.0% |
| !! | AATTTAAACTTCAATCTTCT+TGG | + | chr7_2:80484416-80484435 | None:intergenic | 20.0% |
| !!! | TACAAATAGAAAGTATTTTC+AGG | + | chr7_2:80484814-80484833 | None:intergenic | 20.0% |
| !!! | TTTTCGAATTATTTTCCTAT+TGG | - | chr7_2:80484866-80484885 | Msa1080800:five_prime_UTR | 20.0% |
| !! | ATTTGATGCATAAAAACAAT+TGG | + | chr7_2:80484892-80484911 | None:intergenic | 20.0% |
| ! | AGTTAGAAAGATAAGGAAAT+AGG | + | chr7_2:80481622-80481641 | None:intergenic | 25.0% |
| ! | ATATGACATTTGAAGAAAAG+TGG | + | chr7_2:80481739-80481758 | None:intergenic | 25.0% |
| !! | ATTCATATTATAGCTCTGTT+TGG | - | chr7_2:80481759-80481778 | Msa1080800:three_prime_UTR | 25.0% |
| !! | GTATAAGCTATAAGCTATTT+TGG | - | chr7_2:80481887-80481906 | Msa1080800:three_prime_UTR | 25.0% |
| ! | TAAACAGTTGTGAATTGTTT+GGG | + | chr7_2:80481984-80482003 | None:intergenic | 25.0% |
| ! | ATAAACAGTTGTGAATTGTT+TGG | + | chr7_2:80481985-80482004 | None:intergenic | 25.0% |
| ! | CAAATAAACCAATCCAAAAA+TGG | - | chr7_2:80482020-80482039 | Msa1080800:three_prime_UTR | 25.0% |
| ! | GATATGAAAGAATTGACATA+GGG | + | chr7_2:80482046-80482065 | None:intergenic | 25.0% |
| ! | AGATATGAAAGAATTGACAT+AGG | + | chr7_2:80482047-80482066 | None:intergenic | 25.0% |
| ! | TCATAAAAGTTGAGACAAAA+TGG | + | chr7_2:80482212-80482231 | None:intergenic | 25.0% |
| ! | ATGATATTTGTACAACCATT+TGG | + | chr7_2:80482342-80482361 | None:intergenic | 25.0% |
| ! | ATCCTCTTTAATTAAGGATA+AGG | - | chr7_2:80482555-80482574 | Msa1080800:CDS | 25.0% |
| ! | TTCCTTATCCTTAATTAAAG+AGG | + | chr7_2:80482560-80482579 | None:intergenic | 25.0% |
| ! | TATCAGAAACATATTTCTCT+CGG | - | chr7_2:80483062-80483081 | Msa1080800:CDS | 25.0% |
| !! | TGTGTAAAAAGACTATTTTC+CGG | - | chr7_2:80483231-80483250 | Msa1080800:CDS | 25.0% |
| !!! | AAATTTTGAGGAACATAGTT+CGG | + | chr7_2:80483911-80483930 | None:intergenic | 25.0% |
| ! | AATAAAACATGTGATTAGTG+TGG | - | chr7_2:80484914-80484933 | Msa1080800:five_prime_UTR | 25.0% |
| TGAGGATTTCAAGAATCAAA+GGG | + | chr7_2:80481407-80481426 | None:intergenic | 30.0% | |
| ATGAGGATTTCAAGAATCAA+AGG | + | chr7_2:80481408-80481427 | None:intergenic | 30.0% | |
| TATATCATTGGAATTGAGCA+TGG | + | chr7_2:80481502-80481521 | None:intergenic | 30.0% | |
| TTAGGTCGAAAAATCAAATG+CGG | + | chr7_2:80481544-80481563 | None:intergenic | 30.0% | |
| TAACTTCTTCAAGATCCATA+CGG | - | chr7_2:80481561-80481580 | Msa1080800:three_prime_UTR | 30.0% | |
| GGATTAGAGTTAGAAAGATA+AGG | + | chr7_2:80481629-80481648 | None:intergenic | 30.0% | |
| ! | AACTTGCTTCTTGATTTCAA+TGG | - | chr7_2:80481691-80481710 | Msa1080800:three_prime_UTR | 30.0% |
| ! | AATAATAAATGGATTTGGCC+AGG | + | chr7_2:80482081-80482100 | None:intergenic | 30.0% |
| ! | TTGATTTTGTCCCAAAACAA+GGG | + | chr7_2:80482241-80482260 | None:intergenic | 30.0% |
| !! | ATTGATTTTGTCCCAAAACA+AGG | + | chr7_2:80482242-80482261 | None:intergenic | 30.0% |
| TACTCCTAAATTTATGGTGT+CGG | - | chr7_2:80482362-80482381 | Msa1080800:three_prime_UTR | 30.0% | |
| AATACCGACACCATAAATTT+AGG | + | chr7_2:80482369-80482388 | None:intergenic | 30.0% | |
| AATTAAGGATAAGGAAGAGA+AGG | - | chr7_2:80482564-80482583 | Msa1080800:CDS | 30.0% | |
| ! | ATTGCAAGTATTTTGCTGAT+CGG | - | chr7_2:80482695-80482714 | Msa1080800:CDS | 30.0% |
| GAAGTCGAATAAAGTTTACA+TGG | + | chr7_2:80482804-80482823 | None:intergenic | 30.0% | |
| TTTGAAAATTGTACCGAGAA+TGG | - | chr7_2:80482987-80483006 | Msa1080800:CDS | 30.0% | |
| TTGAAAATTGTACCGAGAAT+GGG | - | chr7_2:80482988-80483007 | Msa1080800:CDS | 30.0% | |
| ! | ATATGTTTCTGATAGCTAAC+TGG | + | chr7_2:80483056-80483075 | None:intergenic | 30.0% |
| ! | GTGTAAAAAGACTATTTTCC+GGG | - | chr7_2:80483232-80483251 | Msa1080800:CDS | 30.0% |
| TATCAATGAGTTGTTAAACC+CGG | + | chr7_2:80483253-80483272 | None:intergenic | 30.0% | |
| TCATTGATACATTTACTCTG+TGG | - | chr7_2:80483264-80483283 | Msa1080800:CDS | 30.0% | |
| !! | CTATTTGACTGATTTGTCAT+GGG | - | chr7_2:80483332-80483351 | Msa1080800:CDS | 30.0% |
| ! | AAAGTACTTGAACTTGAACA+AGG | - | chr7_2:80483432-80483451 | Msa1080800:CDS | 30.0% |
| !!! | GTCTTAAGGTTTTGAAATTG+TGG | - | chr7_2:80483562-80483581 | Msa1080800:CDS | 30.0% |
| AAGAATGATAGAGACAAAAC+TGG | + | chr7_2:80483694-80483713 | None:intergenic | 30.0% | |
| !! | AATTTTGAGGAACATAGTTC+GGG | + | chr7_2:80483910-80483929 | None:intergenic | 30.0% |
| !!! | ACCTCTTTTTTACATGTGAA+TGG | - | chr7_2:80483974-80483993 | Msa1080800:intron | 30.0% |
| !!! | CCTCTTTTTTACATGTGAAT+GGG | - | chr7_2:80483975-80483994 | Msa1080800:intron | 30.0% |
| !! | TGTGAATGGGATATTTTTGT+AGG | - | chr7_2:80483988-80484007 | Msa1080800:intron | 30.0% |
| TGATTTAATGTGAATGGAGA+TGG | + | chr7_2:80484036-80484055 | None:intergenic | 30.0% | |
| !!! | TTTTTTACTCTTGACAGGAA+AGG | - | chr7_2:80484256-80484275 | Msa1080800:intron | 30.0% |
| ! | CTACATAAATTACCTTTTGC+AGG | + | chr7_2:80484454-80484473 | None:intergenic | 30.0% |
| CAAAAGGTAATTTATGTAGC+TGG | - | chr7_2:80484455-80484474 | Msa1080800:intron | 30.0% | |
| ACAAAGTTCCAAAAATGTCT+CGG | + | chr7_2:80484487-80484506 | None:intergenic | 30.0% | |
| !!! | TTTTGGAACTTTGTTACAAG+TGG | - | chr7_2:80484493-80484512 | Msa1080800:intron | 30.0% |
| ATAGAGGGTAGATATCATTA+AGG | - | chr7_2:80484542-80484561 | Msa1080800:intron | 30.0% | |
| ! | AGATATCATTAAGGTGTTTC+TGG | - | chr7_2:80484551-80484570 | Msa1080800:intron | 30.0% |
| !! | AATACGTGCATATGTCATTT+TGG | + | chr7_2:80484758-80484777 | None:intergenic | 30.0% |
| GATCTGCACATAAAAATATG+TGG | + | chr7_2:80484838-80484857 | None:intergenic | 30.0% | |
| CATAAAAACAATTGGCCAAT+AGG | + | chr7_2:80484884-80484903 | None:intergenic | 30.0% | |
| CAAGAATCAAAGGGATCTTA+TGG | + | chr7_2:80481398-80481417 | None:intergenic | 35.0% | |
| GTATGGATCTTGAAGAAGTT+AGG | + | chr7_2:80481562-80481581 | None:intergenic | 35.0% | |
| ! | AAAGTGGAAAAGCACACTTA+CGG | + | chr7_2:80481723-80481742 | None:intergenic | 35.0% |
| !! | AATTGACATAGGGCCATTTT+TGG | + | chr7_2:80482036-80482055 | None:intergenic | 35.0% |
| CATATCTTCAATTGGATTCC+TGG | - | chr7_2:80482060-80482079 | Msa1080800:three_prime_UTR | 35.0% | |
| ! | TGATTTTGTCCCAAAACAAG+GGG | + | chr7_2:80482240-80482259 | None:intergenic | 35.0% |
| AAAATCAATAGAGCGAGAGA+GGG | - | chr7_2:80482253-80482272 | Msa1080800:three_prime_UTR | 35.0% | |
| TCTCAAAAGTTGTCACCAAA+TGG | - | chr7_2:80482324-80482343 | Msa1080800:three_prime_UTR | 35.0% | |
| CTAATTACAGATAAGAGGAG+AGG | + | chr7_2:80482525-80482544 | None:intergenic | 35.0% | |
| GAGAAGGATATCTGTGTAAT+TGG | - | chr7_2:80482580-80482599 | Msa1080800:CDS | 35.0% | |
| !! | ATGGTTCAGTTGATGATTTG+TGG | - | chr7_2:80482839-80482858 | Msa1080800:CDS | 35.0% |
| AATACTTGGAAGCAATGACA+TGG | - | chr7_2:80482941-80482960 | Msa1080800:CDS | 35.0% | |
| ATACTTGGAAGCAATGACAT+GGG | - | chr7_2:80482942-80482961 | Msa1080800:CDS | 35.0% | |
| GATTTCAGATCATTCATTGC+CGG | + | chr7_2:80483117-80483136 | None:intergenic | 35.0% | |
| TATCATCAGCGATCAACAAA+GGG | + | chr7_2:80483188-80483207 | None:intergenic | 35.0% | |
| TTATCATCAGCGATCAACAA+AGG | + | chr7_2:80483189-80483208 | None:intergenic | 35.0% | |
| CCATGACAAATCAGTCAAAT+AGG | + | chr7_2:80483334-80483353 | None:intergenic | 35.0% | |
| !! | CCTATTTGACTGATTTGTCA+TGG | - | chr7_2:80483331-80483350 | Msa1080800:CDS | 35.0% |
| ! | TGAGAGATTTTGTTGAGTAC+TGG | - | chr7_2:80483385-80483404 | Msa1080800:CDS | 35.0% |
| AACCTTTGATGTTACCTCAA+TGG | + | chr7_2:80483496-80483515 | None:intergenic | 35.0% | |
| !! | GGTAACATCAAAGGTTTTAG+AGG | - | chr7_2:80483500-80483519 | Msa1080800:CDS | 35.0% |
| !!! | GTTTTAGAGGCAATTGCTTA+TGG | - | chr7_2:80483513-80483532 | Msa1080800:CDS | 35.0% |
| TTAAAATGGATGGCGAAATG+TGG | - | chr7_2:80483655-80483674 | Msa1080800:CDS | 35.0% | |
| GGTTGGAAAACGAGAATATA+CGG | - | chr7_2:80483754-80483773 | Msa1080800:intron | 35.0% | |
| !! | AGTATGGTGTTATAGATCCA+AGG | - | chr7_2:80483803-80483822 | Msa1080800:intron | 35.0% |
| CCCATTCACATGTAAAAAAG+AGG | + | chr7_2:80483978-80483997 | None:intergenic | 35.0% | |
| !! | GAATGGGATATTTTTGTAGG+AGG | - | chr7_2:80483991-80484010 | Msa1080800:intron | 35.0% |
| !!! | GTGCACTATTTTGATTACTC+TGG | + | chr7_2:80484138-80484157 | None:intergenic | 35.0% |
| ! | CCTAAATCGTCGATTAGTAT+AGG | + | chr7_2:80484167-80484186 | None:intergenic | 35.0% |
| CCTATACTAATCGACGATTT+AGG | - | chr7_2:80484164-80484183 | Msa1080800:intron | 35.0% | |
| TACTAATCGACGATTTAGGT+TGG | - | chr7_2:80484168-80484187 | Msa1080800:intron | 35.0% | |
| TCAAGAGTAAAAAACACCAC+AGG | + | chr7_2:80484250-80484269 | None:intergenic | 35.0% | |
| !!! | TGGTGTTTTTTACTCTTGAC+AGG | - | chr7_2:80484251-80484270 | Msa1080800:intron | 35.0% |
| ! | ATATCGAAGAACGCTTTTCT+TGG | - | chr7_2:80484295-80484314 | Msa1080800:intron | 35.0% |
| ! | TTTCTTGGTTTGAACTTCGA+AGG | - | chr7_2:80484310-80484329 | Msa1080800:intron | 35.0% |
| ! | AGCTGTTATTTGTTTGTGTG+AGG | - | chr7_2:80484366-80484385 | Msa1080800:intron | 35.0% |
| !! | GTTTCTGGTAGAATAACACA+AGG | - | chr7_2:80484566-80484585 | Msa1080800:intron | 35.0% |
| TGAAGAAACTCAAGCTATAG+TGG | + | chr7_2:80484649-80484668 | None:intergenic | 35.0% | |
| CAAAGGGATCTTATGGCTTA+CGG | + | chr7_2:80481391-80481410 | None:intergenic | 40.0% | |
| TTGGAATTGAGCATGGAACA+AGG | + | chr7_2:80481495-80481514 | None:intergenic | 40.0% | |
| GTGAGAAATGAAAGACCGTA+TGG | + | chr7_2:80481579-80481598 | None:intergenic | 40.0% | |
| GGTGAAAACAAGAACATGAG+TGG | + | chr7_2:80481601-80481620 | None:intergenic | 40.0% | |
| !!! | ACATAGGGCCATTTTTGGAT+TGG | + | chr7_2:80482031-80482050 | None:intergenic | 40.0% |
| !! | TATGACACATCCCCTTGTTT+TGG | - | chr7_2:80482227-80482246 | Msa1080800:three_prime_UTR | 40.0% |
| !!! | ATGACACATCCCCTTGTTTT+GGG | - | chr7_2:80482228-80482247 | Msa1080800:three_prime_UTR | 40.0% |
| CAAAATCAATAGAGCGAGAG+AGG | - | chr7_2:80482252-80482271 | Msa1080800:three_prime_UTR | 40.0% | |
| CCAACTTCTTCTACTAACTG+AGG | + | chr7_2:80482414-80482433 | None:intergenic | 40.0% | |
| CCTCAGTTAGTAGAAGAAGT+TGG | - | chr7_2:80482411-80482430 | Msa1080800:three_prime_UTR | 40.0% | |
| CTAACTTCTTCTACTAACCG+AGG | - | chr7_2:80482466-80482485 | Msa1080800:CDS | 40.0% | |
| CCACAACATCACTAGTTGAT+CGG | + | chr7_2:80482609-80482628 | None:intergenic | 40.0% | |
| GAACCTAGTATCTGACAAGT+TGG | + | chr7_2:80482736-80482755 | None:intergenic | 40.0% | |
| TATTCGACTTCTGTACGTTG+TGG | - | chr7_2:80482813-80482832 | Msa1080800:CDS | 40.0% | |
| !! | TCAGTTGATGATTTGTGGCA+TGG | - | chr7_2:80482844-80482863 | Msa1080800:CDS | 40.0% |
| ! | CATGGTGTTAGAAATGCTCT+TGG | - | chr7_2:80482862-80482881 | Msa1080800:CDS | 40.0% |
| ! | ACACACGCAGCAACAATTTT+CGG | + | chr7_2:80482919-80482938 | None:intergenic | 40.0% |
| TCAGCTTGTAATCCCATTCT+CGG | + | chr7_2:80483003-80483022 | None:intergenic | 40.0% | |
| TATCCTAGCTAGACTTCAAC+CGG | - | chr7_2:80483026-80483045 | Msa1080800:CDS | 40.0% | |
| CTGATAGCTAACTGGTTAAC+CGG | + | chr7_2:80483048-80483067 | None:intergenic | 40.0% | |
| ACTTGAGTACATGCTAACTG+AGG | - | chr7_2:80483152-80483171 | Msa1080800:CDS | 40.0% | |
| ATCATCAGCGATCAACAAAG+GGG | + | chr7_2:80483187-80483206 | None:intergenic | 40.0% | |
| TACTTCAGGAAGTGATTCTG+CGG | + | chr7_2:80483292-80483311 | None:intergenic | 40.0% | |
| CAGAATCACTTCCTGAAGTA+GGG | - | chr7_2:80483292-80483311 | Msa1080800:CDS | 40.0% | |
| !! | TGAGTACTGGTTTGATGCAT+CGG | - | chr7_2:80483398-80483417 | Msa1080800:CDS | 40.0% |
| AGCCATTGAGGTAACATCAA+AGG | - | chr7_2:80483491-80483510 | Msa1080800:CDS | 40.0% | |
| AATTGTGGCTTCCATTTGTG+AGG | - | chr7_2:80483577-80483596 | Msa1080800:CDS | 40.0% | |
| ATTGTGGCTTCCATTTGTGA+GGG | - | chr7_2:80483578-80483597 | Msa1080800:CDS | 40.0% | |
| ATCATTCTTGCATTGCCATC+AGG | - | chr7_2:80483705-80483724 | Msa1080800:CDS | 40.0% | |
| TCATTCTTGCATTGCCATCA+GGG | - | chr7_2:80483706-80483725 | Msa1080800:CDS | 40.0% | |
| !! | AGGGCTTTTAACTGAATGGT+TGG | - | chr7_2:80483737-80483756 | Msa1080800:intron | 40.0% |
| GTTATAGATCCAAGGTTGCA+AGG | - | chr7_2:80483811-80483830 | Msa1080800:intron | 40.0% | |
| GAGAAGACTCTCATTGTTAG+AGG | - | chr7_2:80483833-80483852 | Msa1080800:intron | 40.0% | |
| !! | ATCAAATTGAGCGGGTTACT+CGG | + | chr7_2:80483882-80483901 | None:intergenic | 40.0% |
| CTAAACTTCATGCCTAGTGA+AGG | - | chr7_2:80483941-80483960 | Msa1080800:intron | 40.0% | |
| GTGATATTCTCTCCTTCACT+AGG | + | chr7_2:80483956-80483975 | None:intergenic | 40.0% | |
| CGTAAGCATTATGCTGTGTT+GGG | + | chr7_2:80484219-80484238 | None:intergenic | 40.0% | |
| ACGTAAGCATTATGCTGTGT+TGG | + | chr7_2:80484220-80484239 | None:intergenic | 40.0% | |
| !! | CGAAGGAGCATCATATATGA+AGG | - | chr7_2:80484327-80484346 | Msa1080800:intron | 40.0% |
| GTCACAATGTAACCTGCAAA+AGG | - | chr7_2:80484439-80484458 | Msa1080800:intron | 40.0% | |
| TAACACAAGGAGCTGTATGT+AGG | - | chr7_2:80484579-80484598 | Msa1080800:intron | 40.0% | |
| !!! | CATTTTGGAACATCTCTCGT+GGG | + | chr7_2:80484743-80484762 | None:intergenic | 40.0% |
| !!! | TCATTTTGGAACATCTCTCG+TGG | + | chr7_2:80484744-80484763 | None:intergenic | 40.0% |
| GACATATGCACGTATTTGCA+TGG | - | chr7_2:80484762-80484781 | Msa1080800:five_prime_UTR | 40.0% | |
| TCTCTCTCTCTCTCTCTCAA+GGG | - | chr7_2:80481445-80481464 | Msa1080800:three_prime_UTR | 45.0% | |
| ! | TGGAAAAGCACACTTACGGT+AGG | + | chr7_2:80481719-80481738 | None:intergenic | 45.0% |
| CCGATCAACTAGTGATGTTG+TGG | - | chr7_2:80482606-80482625 | Msa1080800:CDS | 45.0% | |
| CAACTAGTGATGTTGTGGTG+AGG | - | chr7_2:80482611-80482630 | Msa1080800:CDS | 45.0% | |
| CTGATCGGCTATCTGAGAAT+TGG | - | chr7_2:80482710-80482729 | Msa1080800:CDS | 45.0% | |
| TGGCCAACTTGTCAGATACT+AGG | - | chr7_2:80482730-80482749 | Msa1080800:CDS | 45.0% | |
| TGCTGCGTGTGTGAAATACT+TGG | - | chr7_2:80482927-80482946 | Msa1080800:CDS | 45.0% | |
| GGTTGAAGTCTAGCTAGGAT+AGG | + | chr7_2:80483027-80483046 | None:intergenic | 45.0% | |
| TAACCGGTTGAAGTCTAGCT+AGG | + | chr7_2:80483032-80483051 | None:intergenic | 45.0% | |
| TTCAGATCATTCATTGCCGG+TGG | + | chr7_2:80483114-80483133 | None:intergenic | 45.0% | |
| GCAGAATCACTTCCTGAAGT+AGG | - | chr7_2:80483291-80483310 | Msa1080800:CDS | 45.0% | |
| !! | ACTGGTTTGATGCATCGGAA+AGG | - | chr7_2:80483403-80483422 | Msa1080800:CDS | 45.0% |
| GATAAAGTTGCGAGCCATTG+AGG | - | chr7_2:80483479-80483498 | Msa1080800:CDS | 45.0% | |
| ACCTTAAGACGTTTCGCAGT+TGG | + | chr7_2:80483552-80483571 | None:intergenic | 45.0% | |
| ! | GGTTTGGTAACCCTCACAAA+TGG | + | chr7_2:80483591-80483610 | None:intergenic | 45.0% |
| ! | GGCAGAATCAATCACTGGTT+TGG | + | chr7_2:80483607-80483626 | None:intergenic | 45.0% |
| GTCATGGCAGAATCAATCAC+TGG | + | chr7_2:80483612-80483631 | None:intergenic | 45.0% | |
| TTCTGCCATGACGAATTGTG+AGG | - | chr7_2:80483620-80483639 | Msa1080800:CDS | 45.0% | |
| AGCATCCTCACAATTCGTCA+TGG | + | chr7_2:80483628-80483647 | None:intergenic | 45.0% | |
| GGATGCTGCGTTGCTTAAAA+TGG | - | chr7_2:80483641-80483660 | Msa1080800:CDS | 45.0% | |
| GCTGCGTTGCTTAAAATGGA+TGG | - | chr7_2:80483645-80483664 | Msa1080800:CDS | 45.0% | |
| CATTCTTGCATTGCCATCAG+GGG | - | chr7_2:80483707-80483726 | Msa1080800:CDS | 45.0% | |
| !! | AGGCAGGGCTTTTAACTGAA+TGG | - | chr7_2:80483733-80483752 | Msa1080800:intron | 45.0% |
| ATACTTCGAATGCCTCAGTC+AGG | + | chr7_2:80483788-80483807 | None:intergenic | 45.0% | |
| ! | TGACTGAGGCATTCGAAGTA+TGG | - | chr7_2:80483787-80483806 | Msa1080800:intron | 45.0% |
| GGGAACACATCAAATTGAGC+GGG | + | chr7_2:80483890-80483909 | None:intergenic | 45.0% | |
| CGGGAACACATCAAATTGAG+CGG | + | chr7_2:80483891-80483910 | None:intergenic | 45.0% | |
| !! | TTAGGTTGGTGAGTGTGACA+TGG | - | chr7_2:80484182-80484201 | Msa1080800:intron | 45.0% |
| TGCTTACGTATGATGTCCTG+TGG | - | chr7_2:80484231-80484250 | Msa1080800:intron | 45.0% | |
| CTCTTGACAGGAAAGGAGAA+AGG | - | chr7_2:80484263-80484282 | Msa1080800:intron | 45.0% | |
| ! | GGCATGAACCGAGACATTTT+TGG | - | chr7_2:80484476-80484495 | Msa1080800:intron | 45.0% |
| !! | TCAGGACTAGCTTTGCAACT+TGG | + | chr7_2:80484796-80484815 | None:intergenic | 45.0% |
| TTATGGCTTACGGCTTGTGC+TGG | + | chr7_2:80481381-80481400 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGGAATG+AGG | + | chr7_2:80481425-80481444 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr7_2:80481430-80481449 | None:intergenic | 50.0% | |
| CTCTCTCTCTCTCTCTCTCA+AGG | - | chr7_2:80481444-80481463 | Msa1080800:three_prime_UTR | 50.0% | |
| AATAGAGCGAGAGAGGGAGA+GGG | - | chr7_2:80482259-80482278 | Msa1080800:three_prime_UTR | 50.0% | |
| ! | GAGGAGAGGCTCTGACTATT+GGG | + | chr7_2:80482511-80482530 | None:intergenic | 50.0% |
| ! | AGAGGAGAGGCTCTGACTAT+TGG | + | chr7_2:80482512-80482531 | None:intergenic | 50.0% |
| CGCAAGAAGGTCGAGATGAT+TGG | - | chr7_2:80482641-80482660 | Msa1080800:CDS | 50.0% | |
| CTTCTGTACGTTGTGGTCGA+TGG | - | chr7_2:80482820-80482839 | Msa1080800:CDS | 50.0% | |
| GACATGGGAAGAGAGTGAAG+AGG | - | chr7_2:80482957-80482976 | Msa1080800:CDS | 50.0% | |
| ATGGGAAGAGAGTGAAGAGG+AGG | - | chr7_2:80482960-80482979 | Msa1080800:CDS | 50.0% | |
| GAGGCGACGATGTAGCAAAA+CGG | + | chr7_2:80483092-80483111 | None:intergenic | 50.0% | |
| AGATCATTCATTGCCGGTGG+AGG | + | chr7_2:80483111-80483130 | None:intergenic | 50.0% | |
| TCCTGAAGTAGGGAACGTCT+CGG | - | chr7_2:80483302-80483321 | Msa1080800:CDS | 50.0% | |
| GCCAACTGCGAAACGTCTTA+AGG | - | chr7_2:80483548-80483567 | Msa1080800:CDS | 50.0% | |
| TGGCGAAATGTGGCAATCTC+TGG | - | chr7_2:80483665-80483684 | Msa1080800:CDS | 50.0% | |
| GAGTCTTCTCCTTGCAACCT+TGG | + | chr7_2:80483823-80483842 | None:intergenic | 50.0% | |
| ACTGTACGCAGCAGAGATAG+AGG | - | chr7_2:80484526-80484545 | Msa1080800:intron | 50.0% | |
| CTGTACGCAGCAGAGATAGA+GGG | - | chr7_2:80484527-80484546 | Msa1080800:intron | 50.0% | |
| TATCAGCTTCCAACCCTCCA+CGG | + | chr7_2:80484686-80484705 | None:intergenic | 50.0% | |
| ! | CATCTCTCGTGGGCTTTTCA+TGG | + | chr7_2:80484733-80484752 | None:intergenic | 50.0% |
| CAATAGAGCGAGAGAGGGAG+AGG | - | chr7_2:80482258-80482277 | Msa1080800:three_prime_UTR | 55.0% | |
| ACCGAGACGTTCCCTACTTC+AGG | + | chr7_2:80483306-80483325 | None:intergenic | 55.0% | |
| TGCATTGCCATCAGGGGATC+AGG | - | chr7_2:80483713-80483732 | Msa1080800:CDS | 55.0% | |
| ACGGTATCCAGACCTGACTG+AGG | - | chr7_2:80483773-80483792 | Msa1080800:intron | 55.0% | |
| TCGAATGCCTCAGTCAGGTC+TGG | + | chr7_2:80483783-80483802 | None:intergenic | 55.0% | |
| TCACTACCCACAACACACCG+TGG | - | chr7_2:80484666-80484685 | Msa1080800:intron | 55.0% | |
| TACCCACAACACACCGTGGA+GGG | - | chr7_2:80484670-80484689 | Msa1080800:intron | 55.0% | |
| AACCCTCCACGGTGTGTTGT+GGG | + | chr7_2:80484675-80484694 | None:intergenic | 55.0% | |
| GTGAGGCTACGCACGCAAGA+AGG | - | chr7_2:80482628-80482647 | Msa1080800:CDS | 60.0% | |
| TGCTACATCGTCGCCTCCAC+CGG | - | chr7_2:80483095-80483114 | Msa1080800:CDS | 60.0% | |
| TTGCCATCAGGGGATCAGGC+AGG | - | chr7_2:80483717-80483736 | Msa1080800:CDS | 60.0% | |
| TGCCATCAGGGGATCAGGCA+GGG | - | chr7_2:80483718-80483737 | Msa1080800:CDS | 60.0% | |
| CTACCCACAACACACCGTGG+AGG | - | chr7_2:80484669-80484688 | Msa1080800:intron | 60.0% | |
| CAACCCTCCACGGTGTGTTG+TGG | + | chr7_2:80484676-80484695 | None:intergenic | 60.0% | |
| CACAACACACCGTGGAGGGT+TGG | - | chr7_2:80484674-80484693 | Msa1080800:intron | 60.0% | |
| AGCCCTGCCTGATCCCCTGA+TGG | + | chr7_2:80483723-80483742 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 80481373 | 80484937 | 80481373 | ID=Msa1080800;Name=Msa1080800 |
| chr7_2 | mRNA | 80481373 | 80484937 | 80481373 | ID=Msa1080800-mRNA-1;Parent=Msa1080800;Name=Msa1080800-mRNA-1;_AED=0.02;_eAED=0.02;_QI=247|1|1|1|0.5|0.33|3|1059|439 |
| chr7_2 | exon | 80481373 | 80483739 | 80481373 | ID=Msa1080800-mRNA-1:exon:20366;Parent=Msa1080800-mRNA-1 |
| chr7_2 | exon | 80484589 | 80484637 | 80484589 | ID=Msa1080800-mRNA-1:exon:20365;Parent=Msa1080800-mRNA-1 |
| chr7_2 | exon | 80484728 | 80484937 | 80484728 | ID=Msa1080800-mRNA-1:exon:20364;Parent=Msa1080800-mRNA-1 |
| chr7_2 | five_prime_UTR | 80484728 | 80484937 | 80484728 | ID=Msa1080800-mRNA-1:five_prime_utr;Parent=Msa1080800-mRNA-1 |
| chr7_2 | five_prime_UTR | 80484601 | 80484637 | 80484601 | ID=Msa1080800-mRNA-1:five_prime_utr;Parent=Msa1080800-mRNA-1 |
| chr7_2 | CDS | 80484589 | 80484600 | 80484589 | ID=Msa1080800-mRNA-1:cds;Parent=Msa1080800-mRNA-1 |
| chr7_2 | CDS | 80482432 | 80483739 | 80482432 | ID=Msa1080800-mRNA-1:cds;Parent=Msa1080800-mRNA-1 |
| chr7_2 | three_prime_UTR | 80481373 | 80482431 | 80481373 | ID=Msa1080800-mRNA-1:three_prime_utr;Parent=Msa1080800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
