Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0865890 | XP_003618023.1 | 97.215 | 395 | 1 | 1 | 60 | 444 | 1 | 395 | 0.0 | 786 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0865890 | sp|Q9BYX2|TBD2A_HUMAN | 38.384 | 297 | 174 | 4 | 149 | 442 | 612 | 902 | 3.11e-56 | 203 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0865890 | G7K509 | 97.215 | 395 | 1 | 1 | 60 | 444 | 1 | 395 | 0.0 | 786 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046760 | Msa0865890 | 0.807064 | 6.067007e-50 | -8.615850e-47 |
| Msa0104700 | Msa0865890 | 0.813545 | 2.424655e-51 | -8.615850e-47 |
| Msa0629650 | Msa0865890 | 0.813967 | 1.957633e-51 | -8.615850e-47 |
| Msa0743680 | Msa0865890 | 0.818642 | 1.762328e-52 | -8.615850e-47 |
| Msa0770360 | Msa0865890 | 0.930638 | 1.223546e-93 | -8.615850e-47 |
| Msa0784410 | Msa0865890 | 0.819003 | 1.458582e-52 | -8.615850e-47 |
| Msa0826220 | Msa0865890 | 0.985837 | 7.952955e-165 | -8.615850e-47 |
| Msa0826760 | Msa0865890 | 0.806209 | 9.194291e-50 | -8.615850e-47 |
| Msa0150990 | Msa0865890 | 0.811561 | 6.582082e-51 | -8.615850e-47 |
| Msa0177700 | Msa0865890 | -0.811845 | 5.711094e-51 | -8.615850e-47 |
| Msa0474590 | Msa0865890 | 0.813446 | 2.549060e-51 | -8.615850e-47 |
| Msa0478840 | Msa0865890 | -0.803653 | 3.145598e-49 | -8.615850e-47 |
| Msa0268090 | Msa0865890 | 0.814192 | 1.745762e-51 | -8.615850e-47 |
| Msa0532540 | Msa0865890 | 0.812998 | 3.196523e-51 | -8.615850e-47 |
| Msa0579290 | Msa0865890 | 0.808607 | 2.849686e-50 | -8.615850e-47 |
| Msa0579390 | Msa0865890 | 0.808974 | 2.379183e-50 | -8.615850e-47 |
| Msa0589390 | Msa0865890 | 0.828226 | 1.011095e-54 | -8.615850e-47 |
| Msa0600410 | Msa0865890 | -0.806526 | 7.881657e-50 | -8.615850e-47 |
| Msa0863700 | Msa0865890 | 0.840544 | 8.157659e-58 | -8.615850e-47 |
| Msa0865890 | Msa0947530 | -0.811860 | 5.667985e-51 | -8.615850e-47 |
| Msa0865890 | Msa0970420 | 0.800776 | 1.229871e-48 | -8.615850e-47 |
| Msa0865890 | Msa1001580 | 0.819022 | 1.444224e-52 | -8.615850e-47 |
| Msa0865890 | Msa1080800 | 0.826919 | 2.082522e-54 | -8.615850e-47 |
| Msa0865890 | Msa1118940 | 0.839054 | 1.993001e-57 | -8.615850e-47 |
| Msa0865890 | Msa1219810 | 0.827201 | 1.782771e-54 | -8.615850e-47 |
| Msa0865890 | Msa1344340 | 0.830840 | 2.341388e-55 | -8.615850e-47 |
| Msa0865890 | Msa1370620 | 0.837394 | 5.334418e-57 | -8.615850e-47 |
| Msa0865890 | Msa1447110 | 0.800458 | 1.428081e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0865890 | MtrunA17_Chr5g0448071 | 97.215 | 395 | 1 | 1 | 60 | 444 | 1 | 395 | 0.0 | 786 |
| Msa0865890 | MtrunA17_Chr1g0181831 | 35.034 | 294 | 172 | 7 | 155 | 435 | 295 | 582 | 3.78e-50 | 182 |
| Msa0865890 | MtrunA17_Chr1g0213391 | 33.654 | 312 | 175 | 7 | 155 | 440 | 238 | 543 | 2.05e-48 | 177 |
| Msa0865890 | MtrunA17_Chr6g0456341 | 34.510 | 255 | 156 | 5 | 154 | 403 | 79 | 327 | 2.35e-38 | 142 |
| Msa0865890 | MtrunA17_Chr2g0301341 | 76.000 | 50 | 12 | 0 | 7 | 56 | 17 | 66 | 1.50e-17 | 79.3 |
| Msa0865890 | MtrunA17_Chr2g0329691 | 25.523 | 239 | 134 | 5 | 155 | 353 | 144 | 378 | 1.46e-15 | 78.6 |
| Msa0865890 | MtrunA17_Chr4g0033831 | 25.833 | 240 | 134 | 6 | 154 | 353 | 150 | 385 | 3.69e-14 | 74.3 |
| Msa0865890 | MtrunA17_Chr4g0064141 | 27.660 | 141 | 92 | 4 | 231 | 366 | 456 | 591 | 7.55e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0865890 | AT3G07890.1 | 81.407 | 398 | 61 | 1 | 60 | 444 | 1 | 398 | 0.0 | 676 |
| Msa0865890 | AT3G07890.4 | 81.407 | 398 | 61 | 1 | 60 | 444 | 1 | 398 | 0.0 | 676 |
| Msa0865890 | AT3G07890.5 | 81.407 | 398 | 61 | 1 | 60 | 444 | 1 | 398 | 0.0 | 676 |
| Msa0865890 | AT3G07890.2 | 81.407 | 398 | 61 | 1 | 60 | 444 | 1 | 398 | 0.0 | 676 |
| Msa0865890 | AT3G07890.3 | 81.407 | 398 | 61 | 1 | 60 | 444 | 1 | 398 | 0.0 | 676 |
| Msa0865890 | AT2G37290.1 | 35.052 | 291 | 171 | 8 | 155 | 435 | 310 | 592 | 4.21e-47 | 174 |
| Msa0865890 | AT2G37290.3 | 34.708 | 291 | 172 | 8 | 155 | 435 | 310 | 592 | 4.46e-47 | 174 |
| Msa0865890 | AT3G55020.2 | 34.727 | 311 | 171 | 7 | 155 | 440 | 237 | 540 | 7.24e-44 | 164 |
| Msa0865890 | AT2G39280.2 | 34.740 | 308 | 171 | 7 | 155 | 438 | 252 | 553 | 8.35e-44 | 164 |
| Msa0865890 | AT3G55020.3 | 34.951 | 309 | 169 | 7 | 155 | 438 | 237 | 538 | 9.38e-44 | 164 |
| Msa0865890 | AT2G39280.1 | 34.740 | 308 | 171 | 7 | 155 | 438 | 224 | 525 | 9.83e-44 | 163 |
| Msa0865890 | AT3G55020.1 | 34.951 | 309 | 169 | 7 | 155 | 438 | 237 | 538 | 2.69e-43 | 162 |
| Msa0865890 | AT2G37290.2 | 31.077 | 325 | 172 | 9 | 155 | 435 | 310 | 626 | 2.15e-41 | 157 |
| Msa0865890 | AT5G15930.1 | 35.686 | 255 | 153 | 5 | 154 | 403 | 77 | 325 | 3.03e-39 | 145 |
| Msa0865890 | AT3G02460.3 | 33.984 | 256 | 158 | 6 | 154 | 404 | 80 | 329 | 1.44e-36 | 137 |
| Msa0865890 | AT3G02460.1 | 33.984 | 256 | 158 | 6 | 154 | 404 | 80 | 329 | 1.58e-36 | 137 |
| Msa0865890 | AT3G02460.4 | 35.556 | 225 | 135 | 5 | 154 | 373 | 80 | 299 | 6.60e-36 | 135 |
| Msa0865890 | AT3G02460.5 | 34.951 | 206 | 124 | 5 | 155 | 355 | 81 | 281 | 1.62e-28 | 114 |
| Msa0865890 | AT3G02460.2 | 34.975 | 203 | 122 | 5 | 155 | 352 | 81 | 278 | 6.93e-28 | 113 |
| Msa0865890 | AT2G30710.1 | 23.137 | 255 | 147 | 6 | 144 | 353 | 120 | 370 | 5.06e-12 | 67.8 |
Find 134 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTATTTGTCATCCACTTTA+AGG | 0.080620 | 5_4:+67203663 | None:intergenic |
| GTGAAATTTCAAGACCTTTA+CGG | 0.248878 | 5_4:-67206242 | Msa0865890:CDS |
| AAACCGAAGAAGATGCATTT+TGG | 0.266291 | 5_4:-67204566 | Msa0865890:CDS |
| TTCAGACAACTCTGCGAGTA+TGG | 0.269992 | 5_4:-67204172 | Msa0865890:intron |
| AATTCAATTTGCCTTTGATA+TGG | 0.289529 | 5_4:-67207494 | Msa0865890:CDS |
| TTACTTTGAAGAAGTTGATT+AGG | 0.313845 | 5_4:-67206031 | Msa0865890:CDS |
| TCAAGCTCCTTCATGACTTC+AGG | 0.321554 | 5_4:+67203710 | None:intergenic |
| ATGCAGGATTGCAACTCATT+TGG | 0.330638 | 5_4:-67204353 | Msa0865890:intron |
| TCAAGACCTTTACGGATTTA+CGG | 0.333594 | 5_4:-67206234 | Msa0865890:CDS |
| TACTTCTAACCCATCATGTT+GGG | 0.337498 | 5_4:-67203978 | Msa0865890:CDS |
| AAGGGATACCACCGGTTCTT+AGG | 0.338243 | 5_4:-67206007 | Msa0865890:CDS |
| TTGCTGAAGCTCTTGGATTT+CGG | 0.341582 | 5_4:-67207522 | Msa0865890:CDS |
| TGTTACACAAACAACTTATC+AGG | 0.346585 | 5_4:-67204504 | Msa0865890:CDS |
| TACACCAGGGCTCTCATATC+AGG | 0.353913 | 5_4:+67203453 | None:intergenic |
| TTGGATGCTTGCTGTCTTGT+TGG | 0.355412 | 5_4:-67204547 | Msa0865890:CDS |
| CTTACGGTTAGTAAATCATC+TGG | 0.358408 | 5_4:+67203910 | None:intergenic |
| CATCCAAAATGCATCTTCTT+CGG | 0.364689 | 5_4:+67204563 | None:intergenic |
| CTATTTGTCATCCACTTTAA+GGG | 0.366536 | 5_4:+67203664 | None:intergenic |
| TCTTTCCGTGATTCTGATGT+TGG | 0.376757 | 5_4:-67205070 | Msa0865890:CDS |
| CTGAGGGGCATGCTGCTCTT+AGG | 0.385895 | 5_4:-67205111 | Msa0865890:CDS |
| TGTTGCAGCATTGTTGTTGC+TGG | 0.387100 | 5_4:-67204595 | Msa0865890:CDS |
| AAATCATCATAATAACTATC+AGG | 0.388289 | 5_4:+67205933 | None:intergenic |
| GCTACCATTGCTGAAGCTCT+TGG | 0.397160 | 5_4:-67207529 | Msa0865890:CDS |
| CTTCCCTGGTCATGCATGGC+TGG | 0.407109 | 5_4:-67205140 | Msa0865890:CDS |
| TAGGAGCTATGGTTCGAGAC+TGG | 0.407411 | 5_4:-67207603 | Msa0865890:CDS |
| ATGCCCTGAGGAGGATATAA+AGG | 0.408255 | 5_4:+67203485 | None:intergenic |
| GCTCTTCTTGAATGAATACT+TGG | 0.410224 | 5_4:+67206275 | None:intergenic |
| GGTTATATTCAATGTGGCCT+TGG | 0.419884 | 5_4:-67204123 | Msa0865890:CDS |
| CTTTCCGTGATTCTGATGTT+GGG | 0.431196 | 5_4:-67205069 | Msa0865890:CDS |
| AAAACTTCAATGAAGATGTA+AGG | 0.440828 | 5_4:+67206072 | None:intergenic |
| GTAAATCATCTGGATCAAAT+AGG | 0.441554 | 5_4:+67203920 | None:intergenic |
| TGAGACAACAAGGTAGAGTT+TGG | 0.448600 | 5_4:-67206160 | Msa0865890:CDS |
| ACGGGAGACTCTTTGAAAAC+AGG | 0.449177 | 5_4:+67204281 | None:intergenic |
| TCAATACTGAAATTTGAGAT+TGG | 0.451864 | 5_4:+67206300 | None:intergenic |
| CTAAGAGCAGCATGCCCCTC+AGG | 0.454012 | 5_4:+67205112 | None:intergenic |
| ATCGAAAGAAAGGAAGAAAC+AGG | 0.456294 | 5_4:-67203735 | Msa0865890:CDS |
| AATCTCAAATTTCAGTATTG+AGG | 0.459676 | 5_4:-67206298 | Msa0865890:CDS |
| AAAGCTAAATTCCCTTAAAG+TGG | 0.461650 | 5_4:-67203675 | Msa0865890:CDS |
| GACCTACCGCGAACCTTCCC+TGG | 0.461802 | 5_4:-67205154 | Msa0865890:CDS |
| GAATCCTTTATATCCTCCTC+AGG | 0.463418 | 5_4:-67203489 | Msa0865890:three_prime_UTR |
| TAGAGTTTGGTGGGCATTGG+AGG | 0.465496 | 5_4:-67206147 | Msa0865890:CDS |
| CGGTTCTTAGGCCTAAGGTT+TGG | 0.467825 | 5_4:-67205995 | Msa0865890:CDS |
| AGGTAGAGTTTGGTGGGCAT+TGG | 0.468349 | 5_4:-67206150 | Msa0865890:CDS |
| TTGAAGAAGTTGATTAGGAA+AGG | 0.470950 | 5_4:-67206026 | Msa0865890:CDS |
| TCAAACAGGCTCAATTGCCT+TGG | 0.473488 | 5_4:+67203284 | None:intergenic |
| TGATCGATCTGTCTAGTAGC+AGG | 0.473866 | 5_4:+67205882 | None:intergenic |
| TAAAGGATTCCACAGTTTCA+AGG | 0.474893 | 5_4:+67203502 | None:intergenic |
| TGAAGAAGTTGATTAGGAAA+GGG | 0.478737 | 5_4:-67206025 | Msa0865890:CDS |
| CAAATACAATATCGAAAGAA+AGG | 0.482958 | 5_4:-67203745 | Msa0865890:CDS |
| TGTCTTGTTGGAAAATGTCC+TGG | 0.490418 | 5_4:-67204535 | Msa0865890:CDS |
| GTGTCCAGCCATGCATGACC+AGG | 0.492772 | 5_4:+67205136 | None:intergenic |
| TTCTGATGTTGGGTATTGTC+AGG | 0.495259 | 5_4:-67205059 | Msa0865890:intron |
| TCAATTGCCTTGGGAAATCA+AGG | 0.500943 | 5_4:+67203294 | None:intergenic |
| TGAAGCTCTTGGATTTCGGT+TGG | 0.502569 | 5_4:-67207518 | Msa0865890:CDS |
| TGATTGCTTCCCCAACATGA+TGG | 0.503130 | 5_4:+67203968 | None:intergenic |
| GACAAAAGCTGTGGAGGGGA+AGG | 0.510751 | 5_4:-67205910 | Msa0865890:CDS |
| CAGGTGGCATTTGATAAGAT+AGG | 0.515677 | 5_4:-67203779 | Msa0865890:CDS |
| AGGAGCTATGGTTCGAGACT+GGG | 0.515941 | 5_4:-67207602 | Msa0865890:CDS |
| TTTCGAAACATTATTGTGGA+AGG | 0.520672 | 5_4:-67207469 | Msa0865890:intron |
| CGTTGAAGCAGACCGTACTT+AGG | 0.525171 | 5_4:+67203532 | None:intergenic |
| CAAACAGGCTCAATTGCCTT+GGG | 0.525194 | 5_4:+67203285 | None:intergenic |
| ATGGCTTCCTTGATTTCCCA+AGG | 0.525665 | 5_4:-67203301 | Msa0865890:three_prime_UTR |
| TGAATGTGTTGAATGAGGTA+AGG | 0.526151 | 5_4:-67206190 | Msa0865890:CDS |
| AAAATAAAGACAAAATCAAA+GGG | 0.526387 | 5_4:+67203641 | None:intergenic |
| ACCACCGGTTCTTAGGCCTA+AGG | 0.526664 | 5_4:-67206000 | Msa0865890:CDS |
| ACTTTCTTAAGTATTCTCCA+TGG | 0.528554 | 5_4:-67203320 | Msa0865890:three_prime_UTR |
| GGCTGCTACATGGAACTTTG+AGG | 0.533408 | 5_4:-67207563 | Msa0865890:CDS |
| GATTGCTTCCCCAACATGAT+GGG | 0.534270 | 5_4:+67203969 | None:intergenic |
| CATGGAAGGTGTAGGAGCTA+TGG | 0.534941 | 5_4:-67207614 | Msa0865890:CDS |
| GAACCTTCCCTGGTCATGCA+TGG | 0.535148 | 5_4:-67205144 | Msa0865890:CDS |
| TACTCTAACCAACCTCTGAC+GGG | 0.539355 | 5_4:+67204263 | None:intergenic |
| CTAAGTGATCGTCCTAAGTA+CGG | 0.541595 | 5_4:-67203544 | Msa0865890:three_prime_UTR |
| TTGTGTAACAGTCGCTAACC+AGG | 0.544589 | 5_4:+67204517 | None:intergenic |
| TTACTCTAACCAACCTCTGA+CGG | 0.545573 | 5_4:+67204262 | None:intergenic |
| GACTCTTTGAAAACAGGCAC+AGG | 0.549621 | 5_4:+67204287 | None:intergenic |
| GGAACCACTCAGTGGTAACA+AGG | 0.552412 | 5_4:+67204308 | None:intergenic |
| TAAACACTCTTTGCTCAACA+TGG | 0.554405 | 5_4:+67204478 | None:intergenic |
| TTACTTCTAACCCATCATGT+TGG | 0.558439 | 5_4:-67203979 | Msa0865890:CDS |
| TCAGACAACTCTGCGAGTAT+GGG | 0.558601 | 5_4:-67204171 | Msa0865890:intron |
| GAGATTGGTATTCAAATGCA+AGG | 0.558769 | 5_4:+67206315 | None:intergenic |
| ATATCCTCCTCAGGGCATCA+TGG | 0.561052 | 5_4:-67203480 | Msa0865890:three_prime_UTR |
| GACAACGAAAACCAAACCTT+AGG | 0.561094 | 5_4:+67205984 | None:intergenic |
| GCATGACCAGGGAAGGTTCG+CGG | 0.562802 | 5_4:+67205148 | None:intergenic |
| TGCATGGCTGGACACACCTG+AGG | 0.567869 | 5_4:-67205128 | Msa0865890:CDS |
| GTTTCGAAAATCCATATCAA+AGG | 0.568905 | 5_4:+67207483 | None:intergenic |
| TTCAAAGAGTCTCCCGTCAG+AGG | 0.572974 | 5_4:-67204275 | Msa0865890:intron |
| CTTCCACCGTAAATCCGTAA+AGG | 0.573362 | 5_4:+67206228 | None:intergenic |
| CAAACCTTAGGCCTAAGAAC+CGG | 0.574976 | 5_4:+67205996 | None:intergenic |
| TTGGGAAATCAAGGAAGCCA+TGG | 0.576180 | 5_4:+67203303 | None:intergenic |
| CAAACATCCTAAAATACACC+AGG | 0.576600 | 5_4:+67203439 | None:intergenic |
| ATTTACGGTGGAAGGGAATG+TGG | 0.580573 | 5_4:-67206219 | Msa0865890:CDS |
| GTTGAATGAGGTAAGGGAAA+AGG | 0.582835 | 5_4:-67206183 | Msa0865890:CDS |
| CAGCCATGCATGACCAGGGA+AGG | 0.584769 | 5_4:+67205141 | None:intergenic |
| TGGGCATTGGAGGCTAGTAA+AGG | 0.588086 | 5_4:-67206137 | Msa0865890:intron |
| GATCGATCTGTCTAGTAGCA+GGG | 0.591539 | 5_4:+67205883 | None:intergenic |
| ACAACAAGGTAGAGTTTGGT+GGG | 0.592742 | 5_4:-67206156 | Msa0865890:CDS |
| GCATGGCTGGACACACCTGA+GGG | 0.595690 | 5_4:-67205127 | Msa0865890:CDS |
| ACAGGAACCTGAAGTCATGA+AGG | 0.596550 | 5_4:-67203717 | Msa0865890:CDS |
| AAACTTCAATGAAGATGTAA+GGG | 0.596630 | 5_4:+67206073 | None:intergenic |
| GACAACAAGGTAGAGTTTGG+TGG | 0.598220 | 5_4:-67206157 | Msa0865890:CDS |
| ACTTCTAACCCATCATGTTG+GGG | 0.607842 | 5_4:-67203977 | Msa0865890:CDS |
| TCATGAAGGAGCTTGATCAA+AGG | 0.615296 | 5_4:-67203703 | Msa0865890:CDS |
| TTTACGGATTTACGGTGGAA+GGG | 0.617053 | 5_4:-67206226 | Msa0865890:CDS |
| AGGGAAAAGGTGAGACAACA+AGG | 0.626455 | 5_4:-67206170 | Msa0865890:CDS |
| TGATGATTTGACAAAAGCTG+TGG | 0.626507 | 5_4:-67205919 | Msa0865890:CDS |
| ACGATCACTTAGATGATCGA+TGG | 0.626790 | 5_4:+67203555 | None:intergenic |
| GACCAGGGAAGGTTCGCGGT+AGG | 0.626818 | 5_4:+67205152 | None:intergenic |
| TGATTTGACAAAAGCTGTGG+AGG | 0.626930 | 5_4:-67205916 | Msa0865890:CDS |
| CGAGCAAAACCTTGAAACTG+TGG | 0.627223 | 5_4:-67203511 | Msa0865890:three_prime_UTR |
| ATCGATCTGTCTAGTAGCAG+GGG | 0.629772 | 5_4:+67205884 | None:intergenic |
| ATTTGACAAAAGCTGTGGAG+GGG | 0.633275 | 5_4:-67205914 | Msa0865890:CDS |
| AAATCCAAGAGCTTCAGCAA+TGG | 0.640642 | 5_4:+67207525 | None:intergenic |
| TTTCCCTTGTTACCACTGAG+TGG | 0.641659 | 5_4:-67204312 | Msa0865890:CDS |
| AATACCCAACATCAGAATCA+CGG | 0.643921 | 5_4:+67205065 | None:intergenic |
| GATTAGGAAAGGGATACCAC+CGG | 0.644264 | 5_4:-67206015 | Msa0865890:CDS |
| GCTTCAGCAATGGTAGCATG+AGG | 0.644454 | 5_4:+67207535 | None:intergenic |
| GAATGTGTTGAATGAGGTAA+GGG | 0.645937 | 5_4:-67206189 | Msa0865890:CDS |
| GATTTGACAAAAGCTGTGGA+GGG | 0.649265 | 5_4:-67205915 | Msa0865890:CDS |
| TGATGTGAATGTGTTGAATG+AGG | 0.650814 | 5_4:-67206195 | Msa0865890:CDS |
| TGGATCAAATAGGTGATGAG+TGG | 0.652823 | 5_4:+67203930 | None:intergenic |
| TATGCCTGATATGAGAGCCC+TGG | 0.653344 | 5_4:-67203457 | Msa0865890:three_prime_UTR |
| ACCTTAGGCCTAAGAACCGG+TGG | 0.654583 | 5_4:+67205999 | None:intergenic |
| TTCATACAACTATAGGACAA+GGG | 0.663703 | 5_4:-67206100 | Msa0865890:intron |
| TGTCCAGCCATGCATGACCA+GGG | 0.668410 | 5_4:+67205137 | None:intergenic |
| ATAATAACTATCAGGAACCG+TGG | 0.668857 | 5_4:+67205941 | None:intergenic |
| CATACCATGATGCCCTGAGG+AGG | 0.671558 | 5_4:+67203476 | None:intergenic |
| GAACCACTCAGTGGTAACAA+GGG | 0.675458 | 5_4:+67204309 | None:intergenic |
| AATCCTTTATATCCTCCTCA+GGG | 0.676018 | 5_4:-67203488 | Msa0865890:three_prime_UTR |
| AGACCTTTACGGATTTACGG+TGG | 0.702102 | 5_4:-67206231 | Msa0865890:CDS |
| GGCTAAGGTTATATTCAATG+TGG | 0.703848 | 5_4:-67204129 | Msa0865890:CDS |
| CATGGCTGGACACACCTGAG+GGG | 0.717304 | 5_4:-67205126 | Msa0865890:CDS |
| AGGCATACCATGATGCCCTG+AGG | 0.719941 | 5_4:+67203473 | None:intergenic |
| AAACATCCTAAAATACACCA+GGG | 0.730245 | 5_4:+67203440 | None:intergenic |
| CAGGCACAGGAACCACTCAG+TGG | 0.731988 | 5_4:+67204300 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTACCTAAAAAAAATAAAA+AGG | - | chr5_4:67203813-67203832 | Msa0865890:intron | 10.0% |
| !! | TTACCTAAAAAAAATAAAAA+GGG | - | chr5_4:67203814-67203833 | Msa0865890:intron | 10.0% |
| !!! | TTTTTTATGATATCAAAAAA+GGG | - | chr5_4:67204294-67204313 | Msa0865890:CDS | 10.0% |
| !!! | ATTTTATATATTGTACTTTA+TGG | - | chr5_4:67207080-67207099 | Msa0865890:intron | 10.0% |
| !!! | TTTCCCTTTTTATTTTTTTT+AGG | + | chr5_4:67203820-67203839 | None:intergenic | 15.0% |
| !!! | ATTTTTAGATGAATTATGAA+GGG | + | chr5_4:67204203-67204222 | None:intergenic | 15.0% |
| !!! | AATTTTTAGATGAATTATGA+AGG | + | chr5_4:67204204-67204223 | None:intergenic | 15.0% |
| !!! | CTTTTTTATGATATCAAAAA+AGG | - | chr5_4:67204293-67204312 | Msa0865890:CDS | 15.0% |
| !! | GATTCAAAATTCAAATTTAT+GGG | + | chr5_4:67204342-67204361 | None:intergenic | 15.0% |
| !! | ATCAAGATTTAATCAAAAAA+GGG | + | chr5_4:67204368-67204387 | None:intergenic | 15.0% |
| !! | AATCAAGATTTAATCAAAAA+AGG | + | chr5_4:67204369-67204388 | None:intergenic | 15.0% |
| !!! | TTTTTATCAAAACACAAAAT+GGG | + | chr5_4:67204394-67204413 | None:intergenic | 15.0% |
| !!! | ATTTTTATCAAAACACAAAA+TGG | + | chr5_4:67204395-67204414 | None:intergenic | 15.0% |
| !!! | TGTTTAAAAATTTTCAAGTT+AGG | - | chr5_4:67206149-67206168 | Msa0865890:CDS | 15.0% |
| !!! | AACAATTGAAAATTTTCTTA+CGG | + | chr5_4:67207020-67207039 | None:intergenic | 15.0% |
| !! | AAAATAAAGACAAAATCAAA+GGG | + | chr5_4:67207273-67207292 | None:intergenic | 15.0% |
| !! | AAAAATAAAGACAAAATCAA+AGG | + | chr5_4:67207274-67207293 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTGTTTCTCT+TGG | - | chr5_4:67207293-67207312 | Msa0865890:intron | 15.0% |
| !!! | TTTTTTTTTTTGTTTCTCTT+GGG | - | chr5_4:67207294-67207313 | Msa0865890:intron | 15.0% |
| !!! | TTATCATTAATTTTTATCAC+AGG | - | chr5_4:67207564-67207583 | Msa0865890:CDS | 15.0% |
| !!! | TATCATTAATTTTTATCACA+GGG | - | chr5_4:67207565-67207584 | Msa0865890:CDS | 15.0% |
| !!! | TTTCCTTAATATCCTTTTAA+GGG | + | chr5_4:67203786-67203805 | None:intergenic | 20.0% |
| !! | TGTAATATAGAGATAGAAAA+AGG | + | chr5_4:67204125-67204144 | None:intergenic | 20.0% |
| !! | GGATTCAAAATTCAAATTTA+TGG | + | chr5_4:67204343-67204362 | None:intergenic | 20.0% |
| !! | TAAGGTAAACAAAAAATGTA+TGG | - | chr5_4:67204555-67204574 | Msa0865890:CDS | 20.0% |
| !! | AAATCATCATAATAACTATC+AGG | + | chr5_4:67204981-67205000 | None:intergenic | 20.0% |
| !! | ACTTTAATATCTTGATTGTT+TGG | - | chr5_4:67205528-67205547 | Msa0865890:intron | 20.0% |
| !! | CTTTAATATCTTGATTGTTT+GGG | - | chr5_4:67205529-67205548 | Msa0865890:intron | 20.0% |
| !!! | AATTCCATTAGTTTTGAAAA+GGG | - | chr5_4:67205587-67205606 | Msa0865890:intron | 20.0% |
| !! | GTATCATCAATTAAAAAAAG+AGG | + | chr5_4:67206026-67206045 | None:intergenic | 20.0% |
| !! | ACTTAAGAAAATACATTCTT+CGG | + | chr5_4:67206258-67206277 | None:intergenic | 20.0% |
| ! | AATTCAATTTGCCTTTGATA+TGG | - | chr5_4:67203417-67203436 | Msa0865890:three_prime_UTR | 25.0% |
| ! | ACAACATAAACAATACAAGA+AGG | + | chr5_4:67203675-67203694 | None:intergenic | 25.0% |
| ! | AATCCCTTAAAAGGATATTA+AGG | - | chr5_4:67203780-67203799 | Msa0865890:intron | 25.0% |
| !! | CTTTCCTTAATATCCTTTTA+AGG | + | chr5_4:67203787-67203806 | None:intergenic | 25.0% |
| ! | TAAAAACAGAACGAAGAAAT+AGG | + | chr5_4:67203997-67204016 | None:intergenic | 25.0% |
| ! | AATAAAACCCTAGAATATAG+GGG | + | chr5_4:67204055-67204074 | None:intergenic | 25.0% |
| ! | GAATAAAACCCTAGAATATA+GGG | + | chr5_4:67204056-67204075 | None:intergenic | 25.0% |
| ! | AGAATAAAACCCTAGAATAT+AGG | + | chr5_4:67204057-67204076 | None:intergenic | 25.0% |
| ! | GGTAAAATTGAAGAAAAAAG+GGG | + | chr5_4:67204169-67204188 | None:intergenic | 25.0% |
| ! | GGGTAAAATTGAAGAAAAAA+GGG | + | chr5_4:67204170-67204189 | None:intergenic | 25.0% |
| ! | ATTATGAAGGGAAATCAAAA+GGG | + | chr5_4:67204191-67204210 | None:intergenic | 25.0% |
| ! | AATTATGAAGGGAAATCAAA+AGG | + | chr5_4:67204192-67204211 | None:intergenic | 25.0% |
| ! | AGATTTAATCAAAAAAGGGT+TGG | + | chr5_4:67204364-67204383 | None:intergenic | 25.0% |
| !! | GTGACAAATATTGTCTTTTT+AGG | + | chr5_4:67204499-67204518 | None:intergenic | 25.0% |
| !!! | TGTGTTTTTTGTGTTGTTTA+AGG | - | chr5_4:67204537-67204556 | Msa0865890:CDS | 25.0% |
| !! | TCAATACTGAAATTTGAGAT+TGG | + | chr5_4:67204614-67204633 | None:intergenic | 25.0% |
| ! | AATCTCAAATTTCAGTATTG+AGG | - | chr5_4:67204613-67204632 | Msa0865890:intron | 25.0% |
| ! | AAACTTCAATGAAGATGTAA+GGG | + | chr5_4:67204841-67204860 | None:intergenic | 25.0% |
| ! | AAAACTTCAATGAAGATGTA+AGG | + | chr5_4:67204842-67204861 | None:intergenic | 25.0% |
| !! | TACATCTTCATTGAAGTTTT+CGG | - | chr5_4:67204842-67204861 | Msa0865890:intron | 25.0% |
| !! | TTACTTTGAAGAAGTTGATT+AGG | - | chr5_4:67204880-67204899 | Msa0865890:intron | 25.0% |
| ! | GTGATGATCATAAACAAAAA+AGG | + | chr5_4:67205068-67205087 | None:intergenic | 25.0% |
| ! | TTTATGATCATCACGAAATT+GGG | - | chr5_4:67205074-67205093 | Msa0865890:CDS | 25.0% |
| ! | AAACATATGATCAACACAAA+AGG | + | chr5_4:67205159-67205178 | None:intergenic | 25.0% |
| ! | AATCACATTGTCTAGATTAA+TGG | - | chr5_4:67205182-67205201 | Msa0865890:intron | 25.0% |
| !!! | CAGATTTTGATCATAATTGT+GGG | - | chr5_4:67205222-67205241 | Msa0865890:intron | 25.0% |
| ! | TACAACCATTAGTATTATTG+TGG | - | chr5_4:67205351-67205370 | Msa0865890:intron | 25.0% |
| ! | ACAACCATTAGTATTATTGT+GGG | - | chr5_4:67205352-67205371 | Msa0865890:intron | 25.0% |
| !!! | GAATTCCATTAGTTTTGAAA+AGG | - | chr5_4:67205586-67205605 | Msa0865890:intron | 25.0% |
| !! | TTTTTCATAACCATTTCTAC+AGG | - | chr5_4:67205735-67205754 | Msa0865890:intron | 25.0% |
| ! | ATAGTAAAACTCAATTCCTT+TGG | - | chr5_4:67206178-67206197 | Msa0865890:CDS | 25.0% |
| ! | TTATTGTCAACTTTAACCAA+AGG | + | chr5_4:67206197-67206216 | None:intergenic | 25.0% |
| ! | ACATCACATTAAAATACCTT+GGG | + | chr5_4:67206481-67206500 | None:intergenic | 25.0% |
| ! | TACATCACATTAAAATACCT+TGG | + | chr5_4:67206482-67206501 | None:intergenic | 25.0% |
| !!! | AAGGAAAAAGTATTACTAAG+GGG | + | chr5_4:67206717-67206736 | None:intergenic | 25.0% |
| !!! | CAAGGAAAAAGTATTACTAA+GGG | + | chr5_4:67206718-67206737 | None:intergenic | 25.0% |
| !!! | TCAAGGAAAAAGTATTACTA+AGG | + | chr5_4:67206719-67206738 | None:intergenic | 25.0% |
| ! | CAAATACAATATCGAAAGAA+AGG | - | chr5_4:67207166-67207185 | Msa0865890:intron | 25.0% |
| GTTTCGAAAATCCATATCAA+AGG | + | chr5_4:67203431-67203450 | None:intergenic | 30.0% | |
| ! | GGATTTTCGAAACATTATTG+TGG | - | chr5_4:67203438-67203457 | Msa0865890:three_prime_UTR | 30.0% |
| TTTCGAAACATTATTGTGGA+AGG | - | chr5_4:67203442-67203461 | Msa0865890:three_prime_UTR | 30.0% | |
| ! | TAGATTCAACTGATTCTGTT+TGG | - | chr5_4:67203637-67203656 | Msa0865890:three_prime_UTR | 30.0% |
| CAGTAAAACGTGAATCAAAT+CGG | + | chr5_4:67203703-67203722 | None:intergenic | 30.0% | |
| TTTCTTTCCCCTATATTCTA+GGG | - | chr5_4:67204045-67204064 | Msa0865890:intron | 30.0% | |
| AGAATGAAGAAAGAAGAGAA+GGG | + | chr5_4:67204083-67204102 | None:intergenic | 30.0% | |
| AAGAATGAAGAAAGAAGAGA+AGG | + | chr5_4:67204084-67204103 | None:intergenic | 30.0% | |
| GGGGTAAAATTGAAGAAAAA+AGG | + | chr5_4:67204171-67204190 | None:intergenic | 30.0% | |
| TTATGAAGGGAAATCAAAAG+GGG | + | chr5_4:67204190-67204209 | None:intergenic | 30.0% | |
| ! | TTTGAAACACAACCATGAAT+TGG | + | chr5_4:67204465-67204484 | None:intergenic | 30.0% |
| GTTGTGTTTCAAATTTGACA+AGG | - | chr5_4:67204472-67204491 | Msa0865890:CDS | 30.0% | |
| ACAACACAAAAAACACAACA+GGG | + | chr5_4:67204534-67204553 | None:intergenic | 30.0% | |
| AACAACACAAAAAACACAAC+AGG | + | chr5_4:67204535-67204554 | None:intergenic | 30.0% | |
| GTGAAATTTCAAGACCTTTA+CGG | - | chr5_4:67204669-67204688 | Msa0865890:intron | 30.0% | |
| TGGTATCTTCATACAACTAT+AGG | - | chr5_4:67204804-67204823 | Msa0865890:intron | 30.0% | |
| TTCATACAACTATAGGACAA+GGG | - | chr5_4:67204811-67204830 | Msa0865890:intron | 30.0% | |
| ! | TTGAAGAAGTTGATTAGGAA+AGG | - | chr5_4:67204885-67204904 | Msa0865890:intron | 30.0% |
| ! | TGAAGAAGTTGATTAGGAAA+GGG | - | chr5_4:67204886-67204905 | Msa0865890:intron | 30.0% |
| GTTTATGATCATCACGAAAT+TGG | - | chr5_4:67205073-67205092 | Msa0865890:CDS | 30.0% | |
| !! | GCAGATTTTGATCATAATTG+TGG | - | chr5_4:67205221-67205240 | Msa0865890:intron | 30.0% |
| ! | CAATAAGTTTTGCTCATTAG+AGG | + | chr5_4:67205266-67205285 | None:intergenic | 30.0% |
| CTCTAATGAGCAAAACTTAT+TGG | - | chr5_4:67205264-67205283 | Msa0865890:intron | 30.0% | |
| ATGAATGTCAATGAGAGTTA+AGG | - | chr5_4:67205289-67205308 | Msa0865890:intron | 30.0% | |
| AGTTAAGGAAGATTCATAAG+AGG | - | chr5_4:67205304-67205323 | Msa0865890:intron | 30.0% | |
| AGATCCCACAATAATACTAA+TGG | + | chr5_4:67205359-67205378 | None:intergenic | 30.0% | |
| ACTAATGGAATTCACATTGT+TGG | + | chr5_4:67205579-67205598 | None:intergenic | 30.0% | |
| TGACACTACTTAATATCTCA+TGG | - | chr5_4:67205964-67205983 | Msa0865890:CDS | 30.0% | |
| ! | TACATCTATTCCTTTTCTTC+TGG | - | chr5_4:67206051-67206070 | Msa0865890:CDS | 30.0% |
| ! | ACATCTATTCCTTTTCTTCT+GGG | - | chr5_4:67206052-67206071 | Msa0865890:CDS | 30.0% |
| AGCAAATGTATGAGCATAAT+AGG | + | chr5_4:67206108-67206127 | None:intergenic | 30.0% | |
| TATTATGCTCATACATTTGC+TGG | - | chr5_4:67206107-67206126 | Msa0865890:intron | 30.0% | |
| !!! | GTACTGACTCTACAATATTT+TGG | - | chr5_4:67206276-67206295 | Msa0865890:CDS | 30.0% |
| TGTTACACAAACAACTTATC+AGG | - | chr5_4:67206407-67206426 | Msa0865890:intron | 30.0% | |
| ! | AATTCTGAAAATTGCCGAAA+TGG | - | chr5_4:67206533-67206552 | Msa0865890:intron | 30.0% |
| GTAAATCATCTGGATCAAAT+AGG | + | chr5_4:67206994-67207013 | None:intergenic | 30.0% | |
| AAAGCTAAATTCCCTTAAAG+TGG | - | chr5_4:67207236-67207255 | Msa0865890:intron | 30.0% | |
| CTATTTGTCATCCACTTTAA+GGG | + | chr5_4:67207250-67207269 | None:intergenic | 30.0% | |
| AAACATCCTAAAATACACCA+GGG | + | chr5_4:67207474-67207493 | None:intergenic | 30.0% | |
| !!! | GTGTATTTTAGGATGTTTGT+AGG | - | chr5_4:67207476-67207495 | Msa0865890:CDS | 30.0% |
| ACTTTCTTAAGTATTCTCCA+TGG | - | chr5_4:67207591-67207610 | Msa0865890:CDS | 30.0% | |
| !!! | CTGGGAAGATATTGTTTTAG+TGG | - | chr5_4:67203327-67203346 | Msa0865890:three_prime_UTR | 35.0% |
| !! | GGCGATGACAATTCTTATTT+TGG | - | chr5_4:67203502-67203521 | Msa0865890:three_prime_UTR | 35.0% |
| TTAGTTTCTCATGTACGAAG+AGG | - | chr5_4:67203576-67203595 | Msa0865890:three_prime_UTR | 35.0% | |
| TTTAAGGGATTAGAACGTTG+CGG | + | chr5_4:67203771-67203790 | None:intergenic | 35.0% | |
| CAACGTTCTAATCCCTTAAA+AGG | - | chr5_4:67203771-67203790 | Msa0865890:CDS | 35.0% | |
| AAACAGAACGAAGAAATAGG+TGG | + | chr5_4:67203994-67204013 | None:intergenic | 35.0% | |
| CTTTCTTTCCCCTATATTCT+AGG | - | chr5_4:67204044-67204063 | Msa0865890:intron | 35.0% | |
| TTGGTCTATTTAGAGGAACT+GGG | + | chr5_4:67204446-67204465 | None:intergenic | 35.0% | |
| ! | ATTGGTCTATTTAGAGGAAC+TGG | + | chr5_4:67204447-67204466 | None:intergenic | 35.0% |
| ! | CCATGAATTGGTCTATTTAG+AGG | + | chr5_4:67204453-67204472 | None:intergenic | 35.0% |
| CCTCTAAATAGACCAATTCA+TGG | - | chr5_4:67204450-67204469 | Msa0865890:CDS | 35.0% | |
| CAAAAAACACAACAGGGTTA+AGG | + | chr5_4:67204528-67204547 | None:intergenic | 35.0% | |
| GAGATTGGTATTCAAATGCA+AGG | + | chr5_4:67204599-67204618 | None:intergenic | 35.0% | |
| GCTCTTCTTGAATGAATACT+TGG | + | chr5_4:67204639-67204658 | None:intergenic | 35.0% | |
| TCAAGACCTTTACGGATTTA+CGG | - | chr5_4:67204677-67204696 | Msa0865890:intron | 35.0% | |
| TGATGTGAATGTGTTGAATG+AGG | - | chr5_4:67204716-67204735 | Msa0865890:intron | 35.0% | |
| TGAATGTGTTGAATGAGGTA+AGG | - | chr5_4:67204721-67204740 | Msa0865890:intron | 35.0% | |
| GAATGTGTTGAATGAGGTAA+GGG | - | chr5_4:67204722-67204741 | Msa0865890:intron | 35.0% | |
| CTTCATACAACTATAGGACA+AGG | - | chr5_4:67204810-67204829 | Msa0865890:intron | 35.0% | |
| ! | TTCATTGAAGTTTTCGGCAT+TGG | - | chr5_4:67204848-67204867 | Msa0865890:intron | 35.0% |
| ATAATAACTATCAGGAACCG+TGG | + | chr5_4:67204973-67204992 | None:intergenic | 35.0% | |
| TGATGATTTGACAAAAGCTG+TGG | - | chr5_4:67204992-67205011 | Msa0865890:intron | 35.0% | |
| ATCATCACGAAATTGGGATT+TGG | - | chr5_4:67205080-67205099 | Msa0865890:CDS | 35.0% | |
| ! | CAGTCCCTTTTCAAAACTAA+TGG | + | chr5_4:67205594-67205613 | None:intergenic | 35.0% |
| GAACTTGTCTAGATGTCAAA+AGG | - | chr5_4:67205684-67205703 | Msa0865890:intron | 35.0% | |
| AATACCCAACATCAGAATCA+CGG | + | chr5_4:67205849-67205868 | None:intergenic | 35.0% | |
| !!! | TCTACAATATTTTGGCTCCA+GGG | - | chr5_4:67206284-67206303 | Msa0865890:CDS | 35.0% |
| ! | AAACCGAAGAAGATGCATTT+TGG | - | chr5_4:67206345-67206364 | Msa0865890:CDS | 35.0% |
| CATCCAAAATGCATCTTCTT+CGG | + | chr5_4:67206351-67206370 | None:intergenic | 35.0% | |
| TAAACACTCTTTGCTCAACA+TGG | + | chr5_4:67206436-67206455 | None:intergenic | 35.0% | |
| !!! | ATGGGATGTTATTTTCTACG+AGG | - | chr5_4:67206758-67206777 | Msa0865890:intron | 35.0% |
| !!! | TGGGATGTTATTTTCTACGA+GGG | - | chr5_4:67206759-67206778 | Msa0865890:intron | 35.0% |
| GGCTAAGGTTATATTCAATG+TGG | - | chr5_4:67206782-67206801 | Msa0865890:intron | 35.0% | |
| TGGTACCTTAAAAATTGCCA+AGG | + | chr5_4:67206808-67206827 | None:intergenic | 35.0% | |
| TTAGACTTTCCGTTCTTTCT+TGG | - | chr5_4:67206833-67206852 | Msa0865890:intron | 35.0% | |
| GATCAGAAACCAAGAAAGAA+CGG | + | chr5_4:67206845-67206864 | None:intergenic | 35.0% | |
| TTACTTCTAACCCATCATGT+TGG | - | chr5_4:67206932-67206951 | Msa0865890:intron | 35.0% | |
| TACTTCTAACCCATCATGTT+GGG | - | chr5_4:67206933-67206952 | Msa0865890:intron | 35.0% | |
| CTTACGGTTAGTAAATCATC+TGG | + | chr5_4:67207004-67207023 | None:intergenic | 35.0% | |
| ATCGAAAGAAAGGAAGAAAC+AGG | - | chr5_4:67207176-67207195 | Msa0865890:intron | 35.0% | |
| GCTATTTGTCATCCACTTTA+AGG | + | chr5_4:67207251-67207270 | None:intergenic | 35.0% | |
| TAAAGGATTCCACAGTTTCA+AGG | + | chr5_4:67207412-67207431 | None:intergenic | 35.0% | |
| AATCCTTTATATCCTCCTCA+GGG | - | chr5_4:67207423-67207442 | Msa0865890:intron | 35.0% | |
| CAAACATCCTAAAATACACC+AGG | + | chr5_4:67207475-67207494 | None:intergenic | 35.0% | |
| !!! | TTGTTTTAGTGGCTGCTACA+TGG | - | chr5_4:67203338-67203357 | Msa0865890:three_prime_UTR | 40.0% |
| AAATCCAAGAGCTTCAGCAA+TGG | + | chr5_4:67203389-67203408 | None:intergenic | 40.0% | |
| TTGCTGAAGCTCTTGGATTT+CGG | - | chr5_4:67203389-67203408 | Msa0865890:three_prime_UTR | 40.0% | |
| GGAAGGTGATTCTCTTAATG+TGG | - | chr5_4:67203459-67203478 | Msa0865890:three_prime_UTR | 40.0% | |
| GTGGTGTTTCTTAGCTGTTT+AGG | + | chr5_4:67203972-67203991 | None:intergenic | 40.0% | |
| GGAACTGGGTCATTAAGATT+AGG | + | chr5_4:67204432-67204451 | None:intergenic | 40.0% | |
| TTTACGGATTTACGGTGGAA+GGG | - | chr5_4:67204685-67204704 | Msa0865890:intron | 40.0% | |
| GTTGAATGAGGTAAGGGAAA+AGG | - | chr5_4:67204728-67204747 | Msa0865890:intron | 40.0% | |
| TGAGACAACAAGGTAGAGTT+TGG | - | chr5_4:67204751-67204770 | Msa0865890:intron | 40.0% | |
| ACAACAAGGTAGAGTTTGGT+GGG | - | chr5_4:67204755-67204774 | Msa0865890:intron | 40.0% | |
| !! | AGGCTAGTAAAGGTGCTAAT+TGG | - | chr5_4:67204784-67204803 | Msa0865890:intron | 40.0% |
| GACAACGAAAACCAAACCTT+AGG | + | chr5_4:67204930-67204949 | None:intergenic | 40.0% | |
| !!! | AAGGTTTGGTTTTCGTTGTC+CGG | - | chr5_4:67204930-67204949 | Msa0865890:intron | 40.0% |
| TGATTTGACAAAAGCTGTGG+AGG | - | chr5_4:67204995-67205014 | Msa0865890:intron | 40.0% | |
| GATTTGACAAAAGCTGTGGA+GGG | - | chr5_4:67204996-67205015 | Msa0865890:intron | 40.0% | |
| ATTTGACAAAAGCTGTGGAG+GGG | - | chr5_4:67204997-67205016 | Msa0865890:intron | 40.0% | |
| GAAAAACATACAAACCTGCG+TGG | - | chr5_4:67205469-67205488 | Msa0865890:intron | 40.0% | |
| TCGATCTTTAAACTGCATCG+AGG | + | chr5_4:67205501-67205520 | None:intergenic | 40.0% | |
| TCGATGCAGTTTAAAGATCG+AGG | - | chr5_4:67205500-67205519 | Msa0865890:intron | 40.0% | |
| CGATGCAGTTTAAAGATCGA+GGG | - | chr5_4:67205501-67205520 | Msa0865890:intron | 40.0% | |
| AAAAGGGACTGTTGTCATCA+GGG | - | chr5_4:67205603-67205622 | Msa0865890:intron | 40.0% | |
| TCTTTCCGTGATTCTGATGT+TGG | - | chr5_4:67205841-67205860 | Msa0865890:intron | 40.0% | |
| CTTTCCGTGATTCTGATGTT+GGG | - | chr5_4:67205842-67205861 | Msa0865890:intron | 40.0% | |
| ! | TTCTGATGTTGGGTATTGTC+AGG | - | chr5_4:67205852-67205871 | Msa0865890:intron | 40.0% |
| GGGAAAACTTCACAAAAGGA+AGG | + | chr5_4:67205896-67205915 | None:intergenic | 40.0% | |
| TTCATCTGCTTGCTTAGCAA+GGG | + | chr5_4:67205919-67205938 | None:intergenic | 40.0% | |
| ATTCATCTGCTTGCTTAGCA+AGG | + | chr5_4:67205920-67205939 | None:intergenic | 40.0% | |
| TTGCTAAGCAAGCAGATGAA+TGG | - | chr5_4:67205919-67205938 | Msa0865890:CDS | 40.0% | |
| CCATCTAATCCCAGAAGAAA+AGG | + | chr5_4:67206064-67206083 | None:intergenic | 40.0% | |
| !!! | CCTTTTCTTCTGGGATTAGA+TGG | - | chr5_4:67206061-67206080 | Msa0865890:CDS | 40.0% |
| !!! | CTCTACAATATTTTGGCTCC+AGG | - | chr5_4:67206283-67206302 | Msa0865890:CDS | 40.0% |
| CTGCAACATAATTCAAACCC+TGG | + | chr5_4:67206304-67206323 | None:intergenic | 40.0% | |
| ! | TGTCTTGTTGGAAAATGTCC+TGG | - | chr5_4:67206376-67206395 | Msa0865890:intron | 40.0% |
| AATTGCCGAAATGGAAATGC+AGG | - | chr5_4:67206542-67206561 | Msa0865890:intron | 40.0% | |
| GCAATCCTGCATTTCCATTT+CGG | + | chr5_4:67206550-67206569 | None:intergenic | 40.0% | |
| ATGCAGGATTGCAACTCATT+TGG | - | chr5_4:67206558-67206577 | Msa0865890:intron | 40.0% | |
| TTACTCTAACCAACCTCTGA+CGG | + | chr5_4:67206652-67206671 | None:intergenic | 40.0% | |
| !!! | GGGATGTTATTTTCTACGAG+GGG | - | chr5_4:67206760-67206779 | Msa0865890:intron | 40.0% |
| !!! | GGATGTTATTTTCTACGAGG+GGG | - | chr5_4:67206761-67206780 | Msa0865890:intron | 40.0% |
| GGTTATATTCAATGTGGCCT+TGG | - | chr5_4:67206788-67206807 | Msa0865890:intron | 40.0% | |
| !! | TGTGGCCTTGGCAATTTTTA+AGG | - | chr5_4:67206800-67206819 | Msa0865890:intron | 40.0% |
| TCACCTCTTATTGCAGATGA+AGG | - | chr5_4:67206901-67206920 | Msa0865890:intron | 40.0% | |
| CTTCCTTCATCTGCAATAAG+AGG | + | chr5_4:67206907-67206926 | None:intergenic | 40.0% | |
| ACTTCTAACCCATCATGTTG+GGG | - | chr5_4:67206934-67206953 | Msa0865890:intron | 40.0% | |
| TGGATCAAATAGGTGATGAG+TGG | + | chr5_4:67206984-67207003 | None:intergenic | 40.0% | |
| ATCATCCGTTTGATGTTTGC+AGG | - | chr5_4:67207113-67207132 | Msa0865890:intron | 40.0% | |
| CAGGTGGCATTTGATAAGAT+AGG | - | chr5_4:67207132-67207151 | Msa0865890:intron | 40.0% | |
| TCATGAAGGAGCTTGATCAA+AGG | - | chr5_4:67207208-67207227 | Msa0865890:intron | 40.0% | |
| ACGATCACTTAGATGATCGA+TGG | + | chr5_4:67207359-67207378 | None:intergenic | 40.0% | |
| CTAAGTGATCGTCCTAAGTA+CGG | - | chr5_4:67207367-67207386 | Msa0865890:intron | 40.0% | |
| GAATCCTTTATATCCTCCTC+AGG | - | chr5_4:67207422-67207441 | Msa0865890:intron | 40.0% | |
| TGAAGCTCTTGGATTTCGGT+TGG | - | chr5_4:67203393-67203412 | Msa0865890:three_prime_UTR | 45.0% | |
| !! | GTCAAAGCTTTGAAGTCGCA+TGG | - | chr5_4:67203481-67203500 | Msa0865890:three_prime_UTR | 45.0% |
| CAGAACGAAGAAATAGGTGG+TGG | + | chr5_4:67203991-67204010 | None:intergenic | 45.0% | |
| AGACCTTTACGGATTTACGG+TGG | - | chr5_4:67204680-67204699 | Msa0865890:intron | 45.0% | |
| CTTCCACCGTAAATCCGTAA+AGG | + | chr5_4:67204686-67204705 | None:intergenic | 45.0% | |
| CTTTACGGATTTACGGTGGA+AGG | - | chr5_4:67204684-67204703 | Msa0865890:intron | 45.0% | |
| ATTTACGGTGGAAGGGAATG+TGG | - | chr5_4:67204692-67204711 | Msa0865890:intron | 45.0% | |
| AGGGAAAAGGTGAGACAACA+AGG | - | chr5_4:67204741-67204760 | Msa0865890:intron | 45.0% | |
| GACAACAAGGTAGAGTTTGG+TGG | - | chr5_4:67204754-67204773 | Msa0865890:intron | 45.0% | |
| GATTAGGAAAGGGATACCAC+CGG | - | chr5_4:67204896-67204915 | Msa0865890:intron | 45.0% | |
| CAAACCTTAGGCCTAAGAAC+CGG | + | chr5_4:67204918-67204937 | None:intergenic | 45.0% | |
| TGCTGCGAAGAAAAAGTCCA+CGG | - | chr5_4:67204953-67204972 | Msa0865890:intron | 45.0% | |
| ATCGATCTGTCTAGTAGCAG+GGG | + | chr5_4:67205030-67205049 | None:intergenic | 45.0% | |
| GATCGATCTGTCTAGTAGCA+GGG | + | chr5_4:67205031-67205050 | None:intergenic | 45.0% | |
| TGATCGATCTGTCTAGTAGC+AGG | + | chr5_4:67205032-67205051 | None:intergenic | 45.0% | |
| GAAAAGGGACTGTTGTCATC+AGG | - | chr5_4:67205602-67205621 | Msa0865890:intron | 45.0% | |
| AGGGGGGAAAACTTCACAAA+AGG | + | chr5_4:67205900-67205919 | None:intergenic | 45.0% | |
| TCATCTGCTTGCTTAGCAAG+GGG | + | chr5_4:67205918-67205937 | None:intergenic | 45.0% | |
| ! | TGTTGCAGCATTGTTGTTGC+TGG | - | chr5_4:67206316-67206335 | Msa0865890:CDS | 45.0% |
| !! | TTGGATGCTTGCTGTCTTGT+TGG | - | chr5_4:67206364-67206383 | Msa0865890:intron | 45.0% |
| TTGTGTAACAGTCGCTAACC+AGG | + | chr5_4:67206397-67206416 | None:intergenic | 45.0% | |
| !! | TGCTCACTAAAAAGTGCCCA+AGG | - | chr5_4:67206462-67206481 | Msa0865890:intron | 45.0% |
| TTTCCCTTGTTACCACTGAG+TGG | - | chr5_4:67206599-67206618 | Msa0865890:intron | 45.0% | |
| GAACCACTCAGTGGTAACAA+GGG | + | chr5_4:67206605-67206624 | None:intergenic | 45.0% | |
| ! | GACTCTTTGAAAACAGGCAC+AGG | + | chr5_4:67206627-67206646 | None:intergenic | 45.0% |
| ! | ACGGGAGACTCTTTGAAAAC+AGG | + | chr5_4:67206633-67206652 | None:intergenic | 45.0% |
| TACTCTAACCAACCTCTGAC+GGG | + | chr5_4:67206651-67206670 | None:intergenic | 45.0% | |
| TCGCAGAGTTGTCTGAATCA+AGG | + | chr5_4:67206736-67206755 | None:intergenic | 45.0% | |
| TTCAGACAACTCTGCGAGTA+TGG | - | chr5_4:67206739-67206758 | Msa0865890:intron | 45.0% | |
| TCAGACAACTCTGCGAGTAT+GGG | - | chr5_4:67206740-67206759 | Msa0865890:intron | 45.0% | |
| ! | TATTTTCTACGAGGGGGCTA+AGG | - | chr5_4:67206767-67206786 | Msa0865890:intron | 45.0% |
| GAACGGAAAGTCTAAGCTAG+TGG | + | chr5_4:67206828-67206847 | None:intergenic | 45.0% | |
| GATTGCTTCCCCAACATGAT+GGG | + | chr5_4:67206945-67206964 | None:intergenic | 45.0% | |
| TGATTGCTTCCCCAACATGA+TGG | + | chr5_4:67206946-67206965 | None:intergenic | 45.0% | |
| ATCCGTTTGATGTTTGCAGG+TGG | - | chr5_4:67207116-67207135 | Msa0865890:intron | 45.0% | |
| TGCCACCTGCAAACATCAAA+CGG | + | chr5_4:67207121-67207140 | None:intergenic | 45.0% | |
| ACAGGAACCTGAAGTCATGA+AGG | - | chr5_4:67207194-67207213 | Msa0865890:intron | 45.0% | |
| TCAAGCTCCTTCATGACTTC+AGG | + | chr5_4:67207204-67207223 | None:intergenic | 45.0% | |
| CGAGCAAAACCTTGAAACTG+TGG | - | chr5_4:67207400-67207419 | Msa0865890:intron | 45.0% | |
| ATGCCCTGAGGAGGATATAA+AGG | + | chr5_4:67207429-67207448 | None:intergenic | 45.0% | |
| ! | TGAGAGCCCTGGTGTATTTT+AGG | - | chr5_4:67207465-67207484 | Msa0865890:intron | 45.0% |
| TTGGGAAATCAAGGAAGCCA+TGG | + | chr5_4:67207611-67207630 | None:intergenic | 45.0% | |
| ATGGCTTCCTTGATTTCCCA+AGG | - | chr5_4:67207610-67207629 | Msa0865890:CDS | 45.0% | |
| TAGGAGCTATGGTTCGAGAC+TGG | - | chr5_4:67203308-67203327 | Msa0865890:three_prime_UTR | 50.0% | |
| AGGAGCTATGGTTCGAGACT+GGG | - | chr5_4:67203309-67203328 | Msa0865890:three_prime_UTR | 50.0% | |
| GGCTGCTACATGGAACTTTG+AGG | - | chr5_4:67203348-67203367 | Msa0865890:three_prime_UTR | 50.0% | |
| GCTTCAGCAATGGTAGCATG+AGG | + | chr5_4:67203379-67203398 | None:intergenic | 50.0% | |
| GCTACCATTGCTGAAGCTCT+TGG | - | chr5_4:67203382-67203401 | Msa0865890:three_prime_UTR | 50.0% | |
| AGAGAGAGACACAGAGAGAG+AGG | - | chr5_4:67203944-67203963 | Msa0865890:CDS | 50.0% | |
| ! | AGGTAGAGTTTGGTGGGCAT+TGG | - | chr5_4:67204761-67204780 | Msa0865890:intron | 50.0% |
| !! | TAGAGTTTGGTGGGCATTGG+AGG | - | chr5_4:67204764-67204783 | Msa0865890:intron | 50.0% |
| !! | TGGGCATTGGAGGCTAGTAA+AGG | - | chr5_4:67204774-67204793 | Msa0865890:intron | 50.0% |
| !! | AAGGGATACCACCGGTTCTT+AGG | - | chr5_4:67204904-67204923 | Msa0865890:intron | 50.0% |
| CGGTTCTTAGGCCTAAGGTT+TGG | - | chr5_4:67204916-67204935 | Msa0865890:intron | 50.0% | |
| !! | GGACTTTTTCTTCGCAGCAC+CGG | + | chr5_4:67204952-67204971 | None:intergenic | 50.0% |
| ! | TGGGTATTGTCAGGTACGTG+TGG | - | chr5_4:67205861-67205880 | Msa0865890:intron | 50.0% |
| ATCTGCTTGCTTAGCAAGGG+GGG | + | chr5_4:67205916-67205935 | None:intergenic | 50.0% | |
| CATCTGCTTGCTTAGCAAGG+GGG | + | chr5_4:67205917-67205936 | None:intergenic | 50.0% | |
| GGAACCACTCAGTGGTAACA+AGG | + | chr5_4:67206606-67206625 | None:intergenic | 50.0% | |
| TTCAAAGAGTCTCCCGTCAG+AGG | - | chr5_4:67206636-67206655 | Msa0865890:intron | 50.0% | |
| CGTTGAAGCAGACCGTACTT+AGG | + | chr5_4:67207382-67207401 | None:intergenic | 50.0% | |
| ! | ATATCCTCCTCAGGGCATCA+TGG | - | chr5_4:67207431-67207450 | Msa0865890:intron | 50.0% |
| TATGCCTGATATGAGAGCCC+TGG | - | chr5_4:67207454-67207473 | Msa0865890:intron | 50.0% | |
| TACACCAGGGCTCTCATATC+AGG | + | chr5_4:67207461-67207480 | None:intergenic | 50.0% | |
| !! | ACCACCGGTTCTTAGGCCTA+AGG | - | chr5_4:67204911-67204930 | Msa0865890:intron | 55.0% |
| ACCTTAGGCCTAAGAACCGG+TGG | + | chr5_4:67204915-67204934 | None:intergenic | 55.0% | |
| GACAAAAGCTGTGGAGGGGA+AGG | - | chr5_4:67205001-67205020 | Msa0865890:intron | 55.0% | |
| CGCGGTAGGTCCTGTAGAAA+TGG | + | chr5_4:67205748-67205767 | None:intergenic | 55.0% | |
| GAACCTTCCCTGGTCATGCA+TGG | - | chr5_4:67205767-67205786 | Msa0865890:intron | 55.0% | |
| TGTCCAGCCATGCATGACCA+GGG | + | chr5_4:67205777-67205796 | None:intergenic | 55.0% | |
| AAGAGTCTCCCGTCAGAGGT+TGG | - | chr5_4:67206640-67206659 | Msa0865890:intron | 55.0% | |
| CATACCATGATGCCCTGAGG+AGG | + | chr5_4:67207438-67207457 | None:intergenic | 55.0% | |
| AGGCATACCATGATGCCCTG+AGG | + | chr5_4:67207441-67207460 | None:intergenic | 55.0% | |
| CATCGAGGACATGTCCACGC+AGG | + | chr5_4:67205486-67205505 | None:intergenic | 60.0% | |
| GCATGACCAGGGAAGGTTCG+CGG | + | chr5_4:67205766-67205785 | None:intergenic | 60.0% | |
| CAGCCATGCATGACCAGGGA+AGG | + | chr5_4:67205773-67205792 | None:intergenic | 60.0% | |
| CTTCCCTGGTCATGCATGGC+TGG | - | chr5_4:67205771-67205790 | Msa0865890:intron | 60.0% | |
| GTGTCCAGCCATGCATGACC+AGG | + | chr5_4:67205778-67205797 | None:intergenic | 60.0% | |
| TGCATGGCTGGACACACCTG+AGG | - | chr5_4:67205783-67205802 | Msa0865890:intron | 60.0% | |
| GCATGGCTGGACACACCTGA+GGG | - | chr5_4:67205784-67205803 | Msa0865890:intron | 60.0% | |
| CATGGCTGGACACACCTGAG+GGG | - | chr5_4:67205785-67205804 | Msa0865890:intron | 60.0% | |
| CTAAGAGCAGCATGCCCCTC+AGG | + | chr5_4:67205802-67205821 | None:intergenic | 60.0% | |
| ! | CTGAGGGGCATGCTGCTCTT+AGG | - | chr5_4:67205800-67205819 | Msa0865890:intron | 60.0% |
| CAGGCACAGGAACCACTCAG+TGG | + | chr5_4:67206614-67206633 | None:intergenic | 60.0% | |
| GACCTACCGCGAACCTTCCC+TGG | - | chr5_4:67205757-67205776 | Msa0865890:intron | 65.0% | |
| GACCAGGGAAGGTTCGCGGT+AGG | + | chr5_4:67205762-67205781 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 67203298 | 67207635 | 67203298 | ID=Msa0865890;Name=Msa0865890 |
| chr5_4 | mRNA | 67203298 | 67207635 | 67203298 | ID=Msa0865890-mRNA-1;Parent=Msa0865890;Name=Msa0865890-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.75|0.66|0.88|0.75|0.77|9|366|444 |
| chr5_4 | exon | 67203298 | 67203798 | 67203298 | ID=Msa0865890-mRNA-1:exon:21178;Parent=Msa0865890-mRNA-1 |
| chr5_4 | exon | 67203915 | 67204016 | 67203915 | ID=Msa0865890-mRNA-1:exon:21177;Parent=Msa0865890-mRNA-1 |
| chr5_4 | exon | 67204112 | 67204189 | 67204112 | ID=Msa0865890-mRNA-1:exon:21176;Parent=Msa0865890-mRNA-1 |
| chr5_4 | exon | 67204276 | 67204369 | 67204276 | ID=Msa0865890-mRNA-1:exon:21175;Parent=Msa0865890-mRNA-1 |
| chr5_4 | exon | 67204450 | 67204628 | 67204450 | ID=Msa0865890-mRNA-1:exon:21174;Parent=Msa0865890-mRNA-1 |
| chr5_4 | exon | 67205060 | 67205176 | 67205060 | ID=Msa0865890-mRNA-1:exon:21173;Parent=Msa0865890-mRNA-1 |
| chr5_4 | exon | 67205881 | 67206107 | 67205881 | ID=Msa0865890-mRNA-1:exon:21172;Parent=Msa0865890-mRNA-1 |
| chr5_4 | exon | 67206138 | 67206374 | 67206138 | ID=Msa0865890-mRNA-1:exon:21171;Parent=Msa0865890-mRNA-1 |
| chr5_4 | exon | 67207470 | 67207635 | 67207470 | ID=Msa0865890-mRNA-1:exon:21170;Parent=Msa0865890-mRNA-1 |
| chr5_4 | CDS | 67207470 | 67207635 | 67207470 | ID=Msa0865890-mRNA-1:cds;Parent=Msa0865890-mRNA-1 |
| chr5_4 | CDS | 67206138 | 67206374 | 67206138 | ID=Msa0865890-mRNA-1:cds;Parent=Msa0865890-mRNA-1 |
| chr5_4 | CDS | 67205881 | 67206107 | 67205881 | ID=Msa0865890-mRNA-1:cds;Parent=Msa0865890-mRNA-1 |
| chr5_4 | CDS | 67205060 | 67205176 | 67205060 | ID=Msa0865890-mRNA-1:cds;Parent=Msa0865890-mRNA-1 |
| chr5_4 | CDS | 67204450 | 67204628 | 67204450 | ID=Msa0865890-mRNA-1:cds;Parent=Msa0865890-mRNA-1 |
| chr5_4 | CDS | 67204276 | 67204369 | 67204276 | ID=Msa0865890-mRNA-1:cds;Parent=Msa0865890-mRNA-1 |
| chr5_4 | CDS | 67204112 | 67204189 | 67204112 | ID=Msa0865890-mRNA-1:cds;Parent=Msa0865890-mRNA-1 |
| chr5_4 | CDS | 67203915 | 67204016 | 67203915 | ID=Msa0865890-mRNA-1:cds;Parent=Msa0865890-mRNA-1 |
| chr5_4 | CDS | 67203664 | 67203798 | 67203664 | ID=Msa0865890-mRNA-1:cds;Parent=Msa0865890-mRNA-1 |
| chr5_4 | three_prime_UTR | 67203298 | 67203663 | 67203298 | ID=Msa0865890-mRNA-1:three_prime_utr;Parent=Msa0865890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
