Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439700 | RHN70535.1 | 97.912 | 431 | 9 | 0 | 1 | 431 | 1 | 431 | 0.0 | 871 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439700 | sp|A0MFS5|WTF1_ARATH | 36.504 | 389 | 208 | 9 | 17 | 386 | 56 | 424 | 2.00e-58 | 202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439700 | A0A396J2B4 | 97.912 | 431 | 9 | 0 | 1 | 431 | 1 | 431 | 0.0 | 871 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008220 | Msa1439700 | 0.812413 | 4.293806e-51 | -8.615850e-47 |
| Msa0031820 | Msa1439700 | 0.808103 | 3.650820e-50 | -8.615850e-47 |
| Msa0035120 | Msa1439700 | 0.815875 | 7.389675e-52 | -8.615850e-47 |
| Msa0041720 | Msa1439700 | 0.820260 | 7.535990e-53 | -8.615850e-47 |
| Msa0043500 | Msa1439700 | 0.811774 | 5.916592e-51 | -8.615850e-47 |
| Msa0056450 | Msa1439700 | 0.821505 | 3.896817e-53 | -8.615850e-47 |
| Msa0057370 | Msa1439700 | 0.832006 | 1.209015e-55 | -8.615850e-47 |
| Msa0104700 | Msa1439700 | 0.842550 | 2.414475e-58 | -8.615850e-47 |
| Msa0108390 | Msa1439700 | 0.823204 | 1.571116e-53 | -8.615850e-47 |
| Msa0112270 | Msa1439700 | 0.801237 | 9.897598e-49 | -8.615850e-47 |
| Msa1344340 | Msa1439700 | 0.801059 | 1.076611e-48 | -8.615850e-47 |
| Msa1365760 | Msa1439700 | 0.811311 | 7.461002e-51 | -8.615850e-47 |
| Msa1410420 | Msa1439700 | 0.820187 | 7.832090e-53 | -8.615850e-47 |
| Msa1415640 | Msa1439700 | 0.806518 | 7.911580e-50 | -8.615850e-47 |
| Msa1418240 | Msa1439700 | 0.822034 | 2.939922e-53 | -8.615850e-47 |
| Msa1420250 | Msa1439700 | 0.809778 | 1.599303e-50 | -8.615850e-47 |
| Msa1435070 | Msa1439700 | 0.997489 | 1.917075e-243 | -8.615850e-47 |
| Msa1435080 | Msa1439700 | 0.833190 | 6.147758e-56 | -8.615850e-47 |
| Msa1435400 | Msa1439700 | 0.806000 | 1.017467e-49 | -8.615850e-47 |
| Msa1439700 | Msa1439710 | 0.872223 | 3.751582e-67 | -8.615850e-47 |
| Msa1439700 | Msa1446780 | 0.832221 | 1.069507e-55 | -8.615850e-47 |
| Msa1439700 | Msa1453360 | 0.803774 | 2.968975e-49 | -8.615850e-47 |
| Msa1439700 | Msa1454530 | 0.820048 | 8.425586e-53 | -8.615850e-47 |
| Msa1439700 | Msa1464290 | 0.805501 | 1.295009e-49 | -8.615850e-47 |
| Msa0615220 | Msa1439700 | 0.805486 | 1.304023e-49 | -8.615850e-47 |
| Msa0620620 | Msa1439700 | 0.816443 | 5.515851e-52 | -8.615850e-47 |
| Msa0640500 | Msa1439700 | 0.810912 | 9.104396e-51 | -8.615850e-47 |
| Msa0648240 | Msa1439700 | -0.807001 | 6.256049e-50 | -8.615850e-47 |
| Msa0661320 | Msa1439700 | 0.812056 | 5.135985e-51 | -8.615850e-47 |
| Msa0664970 | Msa1439700 | 0.806855 | 6.717330e-50 | -8.615850e-47 |
| Msa0679100 | Msa1439700 | 0.804162 | 2.466353e-49 | -8.615850e-47 |
| Msa0689760 | Msa1439700 | 0.809550 | 1.790285e-50 | -8.615850e-47 |
| Msa0716860 | Msa1439700 | 0.823332 | 1.466248e-53 | -8.615850e-47 |
| Msa0723990 | Msa1439700 | 0.806729 | 7.141845e-50 | -8.615850e-47 |
| Msa0741070 | Msa1439700 | 0.800949 | 1.133579e-48 | -8.615850e-47 |
| Msa0742510 | Msa1439700 | 0.800605 | 1.332799e-48 | -8.615850e-47 |
| Msa0751260 | Msa1439700 | 0.841308 | 5.141096e-58 | -8.615850e-47 |
| Msa0753770 | Msa1439700 | 0.825133 | 5.535340e-54 | -8.615850e-47 |
| Msa0757800 | Msa1439700 | 0.817058 | 4.015806e-52 | -8.615850e-47 |
| Msa0770360 | Msa1439700 | 0.819716 | 1.003395e-52 | -8.615850e-47 |
| Msa0784410 | Msa1439700 | 0.804801 | 1.814839e-49 | -8.615850e-47 |
| Msa0787150 | Msa1439700 | 0.801686 | 8.009478e-49 | -8.615850e-47 |
| Msa0795070 | Msa1439700 | 0.826006 | 3.437206e-54 | -8.615850e-47 |
| Msa0800700 | Msa1439700 | 0.808307 | 3.303068e-50 | -8.615850e-47 |
| Msa0821800 | Msa1439700 | 0.806968 | 6.356639e-50 | -8.615850e-47 |
| Msa0826150 | Msa1439700 | 0.800826 | 1.201323e-48 | -8.615850e-47 |
| Msa0826760 | Msa1439700 | 0.821238 | 4.490826e-53 | -8.615850e-47 |
| Msa0828660 | Msa1439700 | 0.802217 | 6.228683e-49 | -8.615850e-47 |
| Msa0126770 | Msa1439700 | 0.813262 | 2.798502e-51 | -8.615850e-47 |
| Msa0144360 | Msa1439700 | 0.805555 | 1.261574e-49 | -8.615850e-47 |
| Msa0150990 | Msa1439700 | 0.819726 | 9.980921e-53 | -8.615850e-47 |
| Msa0160670 | Msa1439700 | 0.821975 | 3.033620e-53 | -8.615850e-47 |
| Msa0168190 | Msa1439700 | 0.813991 | 1.934219e-51 | -8.615850e-47 |
| Msa0171850 | Msa1439700 | 0.803287 | 3.746891e-49 | -8.615850e-47 |
| Msa0181230 | Msa1439700 | 0.800521 | 1.386202e-48 | -8.615850e-47 |
| Msa0183760 | Msa1439700 | 0.807289 | 5.435363e-50 | -8.615850e-47 |
| Msa0187030 | Msa1439700 | 0.829501 | 4.969240e-55 | -8.615850e-47 |
| Msa0207350 | Msa1439700 | 0.812819 | 3.500002e-51 | -8.615850e-47 |
| Msa0215590 | Msa1439700 | 0.801712 | 7.910057e-49 | -8.615850e-47 |
| Msa0225220 | Msa1439700 | 0.828886 | 7.004420e-55 | -8.615850e-47 |
| Msa0230150 | Msa1439700 | 0.817615 | 3.007589e-52 | -8.615850e-47 |
| Msa0230370 | Msa1439700 | 0.806229 | 9.103760e-50 | -8.615850e-47 |
| Msa0231190 | Msa1439700 | 0.805605 | 1.231238e-49 | -8.615850e-47 |
| Msa1243870 | Msa1439700 | 0.803243 | 3.825238e-49 | -8.615850e-47 |
| Msa1244640 | Msa1439700 | 0.813199 | 2.889018e-51 | -8.615850e-47 |
| Msa1265590 | Msa1439700 | 0.801313 | 9.550167e-49 | -8.615850e-47 |
| Msa1272610 | Msa1439700 | 0.813094 | 3.045704e-51 | -8.615850e-47 |
| Msa1293590 | Msa1439700 | 0.819190 | 1.322877e-52 | -8.615850e-47 |
| Msa1329450 | Msa1439700 | 0.802375 | 5.781104e-49 | -8.615850e-47 |
| Msa0381610 | Msa1439700 | -0.809090 | 2.246553e-50 | -8.615850e-47 |
| Msa0382260 | Msa1439700 | 0.843430 | 1.408257e-58 | -8.615850e-47 |
| Msa0382270 | Msa1439700 | 0.980666 | 9.494960e-151 | -8.615850e-47 |
| Msa0403660 | Msa1439700 | 0.816462 | 5.462398e-52 | -8.615850e-47 |
| Msa0411410 | Msa1439700 | 0.801973 | 6.992671e-49 | -8.615850e-47 |
| Msa0420030 | Msa1439700 | 0.800172 | 1.632541e-48 | -8.615850e-47 |
| Msa0431780 | Msa1439700 | 0.887231 | 1.711493e-72 | -8.615850e-47 |
| Msa0455740 | Msa1439700 | 0.820085 | 8.262479e-53 | -8.615850e-47 |
| Msa0465960 | Msa1439700 | 0.803415 | 3.524623e-49 | -8.615850e-47 |
| Msa0471420 | Msa1439700 | 0.812487 | 4.136239e-51 | -8.615850e-47 |
| Msa0473980 | Msa1439700 | 0.809814 | 1.570634e-50 | -8.615850e-47 |
| Msa0476680 | Msa1439700 | 0.805759 | 1.143096e-49 | -8.615850e-47 |
| Msa0479200 | Msa1439700 | 0.815117 | 1.089650e-51 | -8.615850e-47 |
| Msa0480000 | Msa1439700 | 0.815929 | 7.186392e-52 | -8.615850e-47 |
| Msa1021510 | Msa1439700 | 0.803866 | 2.841259e-49 | -8.615850e-47 |
| Msa1028350 | Msa1439700 | 0.815144 | 1.074320e-51 | -8.615850e-47 |
| Msa1028590 | Msa1439700 | 0.801163 | 1.025022e-48 | -8.615850e-47 |
| Msa1034290 | Msa1439700 | 0.813580 | 2.381422e-51 | -8.615850e-47 |
| Msa1034500 | Msa1439700 | 0.826739 | 2.299394e-54 | -8.615850e-47 |
| Msa1038080 | Msa1439700 | 0.837409 | 5.287079e-57 | -8.615850e-47 |
| Msa1069820 | Msa1439700 | 0.800793 | 1.219958e-48 | -8.615850e-47 |
| Msa1080800 | Msa1439700 | 0.807497 | 4.910899e-50 | -8.615850e-47 |
| Msa1088410 | Msa1439700 | 0.802297 | 5.998074e-49 | -8.615850e-47 |
| Msa0253290 | Msa1439700 | 0.819442 | 1.159123e-52 | -8.615850e-47 |
| Msa0264830 | Msa1439700 | 0.803280 | 3.758157e-49 | -8.615850e-47 |
| Msa0308460 | Msa1439700 | 0.812770 | 3.586073e-51 | -8.615850e-47 |
| Msa0333650 | Msa1439700 | 0.802034 | 6.795438e-49 | -8.615850e-47 |
| Msa0340340 | Msa1439700 | 0.801471 | 8.866768e-49 | -8.615850e-47 |
| Msa0340710 | Msa1439700 | 0.802868 | 4.573776e-49 | -8.615850e-47 |
| Msa0342010 | Msa1439700 | 0.838714 | 2.440588e-57 | -8.615850e-47 |
| Msa1129690 | Msa1439700 | 0.816880 | 4.402874e-52 | -8.615850e-47 |
| Msa1157570 | Msa1439700 | 0.809688 | 1.671692e-50 | -8.615850e-47 |
| Msa1162830 | Msa1439700 | 0.805747 | 1.149509e-49 | -8.615850e-47 |
| Msa1163540 | Msa1439700 | 0.818987 | 1.471273e-52 | -8.615850e-47 |
| Msa1164590 | Msa1439700 | 0.817631 | 2.984070e-52 | -8.615850e-47 |
| Msa1190970 | Msa1439700 | 0.806149 | 9.461981e-50 | -8.615850e-47 |
| Msa1223330 | Msa1439700 | 0.813619 | 2.335083e-51 | -8.615850e-47 |
| Msa0485240 | Msa1439700 | 0.815445 | 9.209209e-52 | -8.615850e-47 |
| Msa0510290 | Msa1439700 | 0.811425 | 7.045558e-51 | -8.615850e-47 |
| Msa0520710 | Msa1439700 | 0.979659 | 1.867757e-148 | -8.615850e-47 |
| Msa0521010 | Msa1439700 | 0.805896 | 1.069637e-49 | -8.615850e-47 |
| Msa0530100 | Msa1439700 | 0.809938 | 1.477461e-50 | -8.615850e-47 |
| Msa0549590 | Msa1439700 | 0.804993 | 1.654115e-49 | -8.615850e-47 |
| Msa0559500 | Msa1439700 | 0.801604 | 8.324279e-49 | -8.615850e-47 |
| Msa0579660 | Msa1439700 | 0.808747 | 2.660089e-50 | -8.615850e-47 |
| Msa0597000 | Msa1439700 | 0.829241 | 5.746247e-55 | -8.615850e-47 |
| Msa0861830 | Msa1439700 | 0.805554 | 1.262342e-49 | -8.615850e-47 |
| Msa0868160 | Msa1439700 | 0.812793 | 3.545322e-51 | -8.615850e-47 |
| Msa0868440 | Msa1439700 | 0.804506 | 2.090954e-49 | -8.615850e-47 |
| Msa0900620 | Msa1439700 | 0.807574 | 4.729941e-50 | -8.615850e-47 |
| Msa0932350 | Msa1439700 | 0.807007 | 6.236886e-50 | -8.615850e-47 |
| Msa0936390 | Msa1439700 | 0.817070 | 3.989723e-52 | -8.615850e-47 |
| Msa0937020 | Msa1439700 | 0.818701 | 1.708321e-52 | -8.615850e-47 |
| Msa0947530 | Msa1439700 | -0.801385 | 9.232314e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439700 | MtrunA17_Chr3g0136561 | 97.912 | 431 | 9 | 0 | 1 | 431 | 1 | 431 | 0.0 | 871 |
| Msa1439700 | MtrunA17_Chr6g0473071 | 97.680 | 431 | 10 | 0 | 1 | 431 | 8 | 438 | 0.0 | 863 |
| Msa1439700 | MtrunA17_Chr7g0275561 | 34.384 | 349 | 206 | 6 | 60 | 401 | 110 | 442 | 2.48e-50 | 178 |
| Msa1439700 | MtrunA17_Chr6g0462491 | 32.225 | 391 | 244 | 8 | 22 | 397 | 34 | 418 | 3.92e-49 | 173 |
| Msa1439700 | MtrunA17_Chr1g0185761 | 33.237 | 346 | 213 | 6 | 40 | 377 | 39 | 374 | 1.15e-45 | 162 |
| Msa1439700 | MtrunA17_Chr7g0255281 | 34.024 | 338 | 196 | 10 | 90 | 422 | 99 | 414 | 3.82e-45 | 162 |
| Msa1439700 | MtrunA17_Chr1g0161181 | 33.140 | 344 | 212 | 6 | 42 | 377 | 41 | 374 | 1.70e-44 | 159 |
| Msa1439700 | MtrunA17_Chr8g0381061 | 31.962 | 316 | 202 | 7 | 57 | 367 | 58 | 365 | 5.01e-41 | 150 |
| Msa1439700 | MtrunA17_Chr8g0358271 | 31.073 | 354 | 218 | 10 | 33 | 371 | 29 | 371 | 2.24e-39 | 145 |
| Msa1439700 | MtrunA17_Chr7g0268361 | 29.016 | 386 | 238 | 10 | 57 | 424 | 53 | 420 | 1.32e-38 | 144 |
| Msa1439700 | MtrunA17_Chr3g0088781 | 31.765 | 340 | 208 | 8 | 25 | 363 | 14 | 330 | 2.93e-38 | 143 |
| Msa1439700 | MtrunA17_Chr1g0153201 | 30.882 | 340 | 211 | 7 | 25 | 363 | 14 | 330 | 7.01e-38 | 142 |
| Msa1439700 | MtrunA17_Chr3g0115901 | 32.248 | 307 | 193 | 6 | 62 | 363 | 83 | 379 | 4.22e-36 | 137 |
| Msa1439700 | MtrunA17_Chr3g0088811 | 35.714 | 224 | 127 | 5 | 141 | 363 | 23 | 230 | 1.91e-33 | 127 |
| Msa1439700 | MtrunA17_Chr3g0121121 | 31.515 | 330 | 189 | 8 | 58 | 367 | 78 | 390 | 3.74e-33 | 130 |
| Msa1439700 | MtrunA17_Chr2g0311491 | 35.950 | 242 | 142 | 5 | 144 | 377 | 1 | 237 | 4.55e-32 | 124 |
| Msa1439700 | MtrunA17_Chr6g0467331 | 28.895 | 353 | 228 | 9 | 42 | 386 | 36 | 373 | 8.69e-31 | 125 |
| Msa1439700 | MtrunA17_Chr3g0109091 | 27.322 | 366 | 237 | 9 | 22 | 372 | 40 | 391 | 6.48e-30 | 120 |
| Msa1439700 | MtrunA17_Chr7g0220971 | 28.025 | 314 | 215 | 5 | 55 | 367 | 72 | 375 | 3.59e-28 | 115 |
| Msa1439700 | MtrunA17_Chr6g0462481 | 31.707 | 205 | 130 | 4 | 115 | 314 | 17 | 216 | 1.68e-22 | 95.1 |
| Msa1439700 | MtrunA17_Chr8g0389501 | 31.771 | 192 | 113 | 5 | 115 | 297 | 56 | 238 | 2.11e-15 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439700 | AT5G21970.1 | 66.667 | 390 | 121 | 5 | 20 | 408 | 39 | 420 | 0.0 | 521 |
| Msa1439700 | AT5G21970.2 | 66.667 | 390 | 121 | 5 | 20 | 408 | 39 | 420 | 0.0 | 521 |
| Msa1439700 | AT4G01037.1 | 36.504 | 389 | 208 | 9 | 17 | 386 | 56 | 424 | 2.03e-59 | 202 |
| Msa1439700 | AT3G63090.1 | 31.443 | 388 | 245 | 8 | 22 | 402 | 29 | 402 | 2.78e-48 | 170 |
| Msa1439700 | AT4G33495.1 | 33.773 | 379 | 223 | 11 | 25 | 388 | 38 | 403 | 1.91e-47 | 168 |
| Msa1439700 | AT5G48040.1 | 32.295 | 353 | 209 | 8 | 41 | 379 | 44 | 380 | 6.67e-45 | 161 |
| Msa1439700 | AT1G79120.1 | 31.653 | 357 | 222 | 6 | 38 | 382 | 64 | 410 | 4.57e-44 | 159 |
| Msa1439700 | AT1G79120.2 | 31.653 | 357 | 222 | 6 | 38 | 382 | 64 | 410 | 4.57e-44 | 159 |
| Msa1439700 | AT2G31290.1 | 31.285 | 358 | 217 | 7 | 37 | 387 | 29 | 364 | 1.14e-42 | 155 |
| Msa1439700 | AT2G31290.2 | 31.285 | 358 | 217 | 7 | 37 | 387 | 29 | 364 | 1.14e-42 | 155 |
| Msa1439700 | AT5G45790.2 | 31.421 | 366 | 223 | 9 | 17 | 372 | 48 | 395 | 4.27e-41 | 151 |
| Msa1439700 | AT5G45790.1 | 36.082 | 291 | 162 | 7 | 90 | 372 | 36 | 310 | 1.09e-40 | 148 |
| Msa1439700 | AT4G08940.1 | 31.529 | 314 | 194 | 6 | 57 | 363 | 83 | 382 | 1.54e-40 | 149 |
| Msa1439700 | AT5G62990.1 | 35.152 | 330 | 176 | 9 | 58 | 367 | 81 | 392 | 2.39e-40 | 150 |
| Msa1439700 | AT3G58520.1 | 32.827 | 329 | 202 | 8 | 56 | 372 | 55 | 376 | 4.83e-40 | 148 |
| Msa1439700 | AT1G06440.1 | 29.211 | 380 | 240 | 8 | 5 | 367 | 3 | 370 | 1.92e-36 | 138 |
| Msa1439700 | AT3G58520.2 | 34.138 | 290 | 174 | 7 | 95 | 372 | 80 | 364 | 3.98e-36 | 137 |
| Msa1439700 | AT1G71850.1 | 27.157 | 394 | 268 | 7 | 22 | 410 | 17 | 396 | 2.36e-34 | 134 |
| Msa1439700 | AT4G24320.1 | 28.767 | 292 | 195 | 6 | 91 | 375 | 78 | 363 | 2.43e-23 | 101 |
| Msa1439700 | AT2G39120.1 | 27.707 | 314 | 216 | 6 | 55 | 367 | 52 | 355 | 2.97e-23 | 101 |
Find 77 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAACTGGAATAACCATTTC+TGG | 0.211698 | tig0028837:+15379 | None:intergenic |
| AAAAGGGTGCATAGTTATTA+TGG | 0.236478 | tig0028837:-14845 | Msa1439700:CDS |
| TCAGAGATTCTGTGAGGTTT+TGG | 0.253264 | tig0028837:+15322 | None:intergenic |
| CTTAGTCTTGTTGGCTATAG+AGG | 0.357273 | tig0028837:-14485 | Msa1439700:CDS |
| GATTCATAGCAATCGATTCA+TGG | 0.376006 | tig0028837:-15564 | Msa1439700:CDS |
| TTGTTTCTTGGAATTCTGAA+TGG | 0.380201 | tig0028837:-14982 | Msa1439700:CDS |
| ACAGGAAATTTCAAAGGAAA+TGG | 0.381695 | tig0028837:+14875 | None:intergenic |
| GGATGTGGAGCTTGAGCAAC+AGG | 0.382512 | tig0028837:-14369 | Msa1439700:CDS |
| AAAATTGCTGTTATTCGCAT+TGG | 0.392112 | tig0028837:-15537 | Msa1439700:CDS |
| TTCACAAATTCAATGCGGTT+TGG | 0.393479 | tig0028837:-15586 | None:intergenic |
| AGCTCTATAAGGATCGTAAC+GGG | 0.395197 | tig0028837:-15270 | Msa1439700:CDS |
| GAGAAGCTTCTTAGTCTTGT+TGG | 0.399437 | tig0028837:-14494 | Msa1439700:CDS |
| AACAGAAGCTTATGATGGTT+CGG | 0.405777 | tig0028837:-14552 | Msa1439700:CDS |
| AAACCCTTTGCATCAGCATA+AGG | 0.409922 | tig0028837:+14782 | None:intergenic |
| AAGATCGAAGCAAGAAGAAA+AGG | 0.422615 | tig0028837:-15483 | Msa1439700:CDS |
| AAATTGCTGTTATTCGCATT+GGG | 0.423537 | tig0028837:-15536 | Msa1439700:CDS |
| ACTCCCAACGGAAGTGAGTT+AGG | 0.429164 | tig0028837:+14666 | None:intergenic |
| AAGCAAACCCGGGGTGTGTT+CGG | 0.431409 | tig0028837:+14904 | None:intergenic |
| ATGTTTCTGAGAGGGGTAAG+AGG | 0.440704 | tig0028837:-14589 | Msa1439700:CDS |
| AGGATCGTAACGGGGTGTTA+TGG | 0.444477 | tig0028837:-15261 | Msa1439700:CDS |
| TCTCCTTATGCTGATGCAAA+GGG | 0.446830 | tig0028837:-14785 | Msa1439700:CDS |
| TCGAAGCAGCAACAGAGAAA+TGG | 0.448143 | tig0028837:-15450 | Msa1439700:CDS |
| GTTCTTTAGAATTCGATAAG+AGG | 0.449761 | tig0028837:-14751 | Msa1439700:CDS |
| TGATTCTGATGTGGAGGACT+TGG | 0.465301 | tig0028837:-14390 | Msa1439700:CDS |
| GATTCTGAGATGGATGTTAG+AGG | 0.467647 | tig0028837:-14311 | Msa1439700:CDS |
| TCTCGAACAAGAACCAGAAA+TGG | 0.467938 | tig0028837:-15392 | Msa1439700:CDS |
| TGTTTCTTGGAATTCTGAAT+GGG | 0.470467 | tig0028837:-14981 | Msa1439700:CDS |
| CTTCTTCTCAATCTCTGTGA+TGG | 0.477726 | tig0028837:+14958 | None:intergenic |
| TAATGTGAAAGAGATCGAAC+TGG | 0.482436 | tig0028837:+15364 | None:intergenic |
| AGATCGAAGCAAGAAGAAAA+GGG | 0.484434 | tig0028837:-15482 | Msa1439700:CDS |
| GTCTCCTTATGCTGATGCAA+AGG | 0.487202 | tig0028837:-14786 | Msa1439700:CDS |
| GAATAAGACGATTGTGGAAG+GGG | 0.488073 | tig0028837:-14936 | Msa1439700:CDS |
| GAAGAAGAATAAGACGATTG+TGG | 0.490121 | tig0028837:-14942 | Msa1439700:CDS |
| AATGGTAGCGAAAGCAAACC+CGG | 0.509498 | tig0028837:+14893 | None:intergenic |
| AGGAAGGAAGAAGAAGTTTG+AGG | 0.519477 | tig0028837:-14465 | Msa1439700:CDS |
| TCAGAATCGTCCTCGAGTAA+AGG | 0.523469 | tig0028837:+14326 | None:intergenic |
| AAGAATAAGACGATTGTGGA+AGG | 0.524672 | tig0028837:-14938 | Msa1439700:CDS |
| TTCTTTAGAATTCGATAAGA+GGG | 0.527132 | tig0028837:-14750 | Msa1439700:CDS |
| TACTAGGTTGCTTATGATGT+CGG | 0.530829 | tig0028837:-15152 | Msa1439700:CDS |
| GGTTGATAAACGTGTTCAGT+TGG | 0.531073 | tig0028837:-15131 | Msa1439700:CDS |
| GATGCAAAGGGTTTGAAACC+TGG | 0.532506 | tig0028837:-14773 | Msa1439700:CDS |
| AAGCTGCTGAATATGTTACT+AGG | 0.532919 | tig0028837:-15168 | Msa1439700:CDS |
| CAATGAGTTCTAAAATCCAT+TGG | 0.537215 | tig0028837:+15073 | None:intergenic |
| TCACCTAACTCACTTCCGTT+GGG | 0.539444 | tig0028837:-14669 | Msa1439700:CDS |
| AGTGATGAGGAAGGCGGTGA+TGG | 0.540545 | tig0028837:-14431 | Msa1439700:CDS |
| TTTGATGGAAGAACACAAAA+GGG | 0.543427 | tig0028837:-15212 | Msa1439700:CDS |
| ACAGGATACCTTGGAGTACA+AGG | 0.547237 | tig0028837:-14351 | Msa1439700:CDS |
| AACTGAAACCGAACACACCC+CGG | 0.548649 | tig0028837:-14912 | Msa1439700:CDS |
| ATCACCTAACTCACTTCCGT+TGG | 0.553764 | tig0028837:-14670 | Msa1439700:CDS |
| TTATCGAATTCTAAAGAACC+AGG | 0.555066 | tig0028837:+14755 | None:intergenic |
| ACTGAAACCGAACACACCCC+GGG | 0.560385 | tig0028837:-14911 | Msa1439700:CDS |
| GTCTTGTTGGCTATAGAGGA+AGG | 0.560921 | tig0028837:-14481 | Msa1439700:CDS |
| AAATTTACAGGAAATTTCAA+AGG | 0.561249 | tig0028837:+14869 | None:intergenic |
| GCTTGAGCAACAGGATACCT+TGG | 0.563372 | tig0028837:-14360 | Msa1439700:CDS |
| TGATGTGGAGGACTTGGATG+TGG | 0.571180 | tig0028837:-14384 | Msa1439700:CDS |
| ATTCTGAGATGGATGTTAGA+GGG | 0.571949 | tig0028837:-14310 | Msa1439700:CDS |
| AACTCAACATCGTCAAGAGA+AGG | 0.575314 | tig0028837:+15013 | None:intergenic |
| TTATGCCTCAGAAGTTGATG+AGG | 0.583152 | tig0028837:-14640 | Msa1439700:CDS |
| ACTCGAGGACGATTCTGAGA+TGG | 0.584295 | tig0028837:-14321 | Msa1439700:CDS |
| AGAATAAGACGATTGTGGAA+GGG | 0.588082 | tig0028837:-14937 | Msa1439700:CDS |
| GCTTCAGAGTGATTCTGATG+TGG | 0.588652 | tig0028837:-14399 | Msa1439700:CDS |
| CGTAACGGGGTGTTATGGTG+TGG | 0.588860 | tig0028837:-15256 | Msa1439700:CDS |
| GGCGGATAGTGATAGTGATG+AGG | 0.590246 | tig0028837:-14444 | Msa1439700:CDS |
| GAGCTCTATAAGGATCGTAA+CGG | 0.593963 | tig0028837:-15271 | Msa1439700:CDS |
| TAAAGGATCCTTGTACTCCA+AGG | 0.600584 | tig0028837:+14343 | None:intergenic |
| AAGGAAGAAGAAGTTTGAGG+CGG | 0.603463 | tig0028837:-14462 | Msa1439700:CDS |
| TCAGAGTGATTCTGATGTGG+AGG | 0.607726 | tig0028837:-14396 | Msa1439700:CDS |
| AAAAGCCTCATCAACTTCTG+AGG | 0.608858 | tig0028837:+14635 | None:intergenic |
| GTTATTCGCATTGGGAACGA+TGG | 0.640658 | tig0028837:-15528 | Msa1439700:CDS |
| AGTGATAGTGATGAGGAAGG+CGG | 0.642676 | tig0028837:-14437 | Msa1439700:CDS |
| GATAGTGATAGTGATGAGGA+AGG | 0.653348 | tig0028837:-14440 | Msa1439700:CDS |
| GAGGCATAACTAACTCCCAA+CGG | 0.662694 | tig0028837:+14654 | None:intergenic |
| ATGGTAGCGAAAGCAAACCC+GGG | 0.662877 | tig0028837:+14894 | None:intergenic |
| GTACAAGGATCCTTTACTCG+AGG | 0.671532 | tig0028837:-14336 | Msa1439700:CDS |
| GCTCTATAAGGATCGTAACG+GGG | 0.700866 | tig0028837:-15269 | Msa1439700:CDS |
| AGAAAATCAGAGATTCTGTG+AGG | 0.714200 | tig0028837:+15316 | None:intergenic |
| TGGTAGCGAAAGCAAACCCG+GGG | 0.722533 | tig0028837:+14895 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTCCTGTAAATTTTAAA+AGG | - | tig0028837:15013-15032 | Msa1439700:CDS | 15.0% |
| !!! | ATTTCCTGTAAATTTTAAAA+GGG | - | tig0028837:15014-15033 | Msa1439700:CDS | 15.0% |
| !!! | AATTTCCTGTAAATTTTAAA+AGG | - | tig0028837:15013-15032 | Msa1439700:CDS | 15.0% |
| !!! | ATTTCCTGTAAATTTTAAAA+GGG | - | tig0028837:15014-15033 | Msa1439700:CDS | 15.0% |
| !! | AAATTTACAGGAAATTTCAA+AGG | + | tig0028837:15009-15028 | None:intergenic | 20.0% |
| !! | TGAAAAGATAAAAATGTTTC+AGG | - | tig0028837:15053-15072 | Msa1439700:CDS | 20.0% |
| !!! | TATTTTTTATGTTTCTGAGA+GGG | - | tig0028837:15278-15297 | Msa1439700:CDS | 20.0% |
| !! | AAATTTACAGGAAATTTCAA+AGG | + | tig0028837:15009-15028 | None:intergenic | 20.0% |
| !! | TGAAAAGATAAAAATGTTTC+AGG | - | tig0028837:15053-15072 | Msa1439700:CDS | 20.0% |
| !!! | TATTTTTTATGTTTCTGAGA+GGG | - | tig0028837:15278-15297 | Msa1439700:CDS | 20.0% |
| ! | TATAGAGCTCAAAAAGTTTA+GGG | + | tig0028837:14594-14613 | None:intergenic | 25.0% |
| ! | TTATAGAGCTCAAAAAGTTT+AGG | + | tig0028837:14595-14614 | None:intergenic | 25.0% |
| !!! | TAAACTTTTTGAGCTCTATA+AGG | - | tig0028837:14594-14613 | Msa1439700:CDS | 25.0% |
| !!! | AATGGATTTTAGAACTCATT+GGG | - | tig0028837:14804-14823 | Msa1439700:CDS | 25.0% |
| !!! | TTCTTTAGAATTCGATAAGA+GGG | - | tig0028837:15125-15144 | Msa1439700:CDS | 25.0% |
| !!! | GTATTTTTTATGTTTCTGAG+AGG | - | tig0028837:15277-15296 | Msa1439700:CDS | 25.0% |
| !!! | ATTTTTTATGTTTCTGAGAG+GGG | - | tig0028837:15279-15298 | Msa1439700:CDS | 25.0% |
| !! | TTTTTAACAGAAGCTTATGA+TGG | - | tig0028837:15318-15337 | Msa1439700:CDS | 25.0% |
| !!! | AGAAATCTCCTTTGTTTTTA+TGG | - | tig0028837:15355-15374 | Msa1439700:CDS | 25.0% |
| ! | TATAGAGCTCAAAAAGTTTA+GGG | + | tig0028837:14594-14613 | None:intergenic | 25.0% |
| ! | TTATAGAGCTCAAAAAGTTT+AGG | + | tig0028837:14595-14614 | None:intergenic | 25.0% |
| !!! | TAAACTTTTTGAGCTCTATA+AGG | - | tig0028837:14594-14613 | Msa1439700:CDS | 25.0% |
| !!! | AATGGATTTTAGAACTCATT+GGG | - | tig0028837:14804-14823 | Msa1439700:CDS | 25.0% |
| !!! | TTCTTTAGAATTCGATAAGA+GGG | - | tig0028837:15125-15144 | Msa1439700:CDS | 25.0% |
| !!! | GTATTTTTTATGTTTCTGAG+AGG | - | tig0028837:15277-15296 | Msa1439700:CDS | 25.0% |
| !!! | ATTTTTTATGTTTCTGAGAG+GGG | - | tig0028837:15279-15298 | Msa1439700:CDS | 25.0% |
| !! | TTTTTAACAGAAGCTTATGA+TGG | - | tig0028837:15318-15337 | Msa1439700:CDS | 25.0% |
| !!! | AGAAATCTCCTTTGTTTTTA+TGG | - | tig0028837:15355-15374 | Msa1439700:CDS | 25.0% |
| ! | AAAATTGCTGTTATTCGCAT+TGG | - | tig0028837:14338-14357 | Msa1439700:CDS | 30.0% |
| ! | AAATTGCTGTTATTCGCATT+GGG | - | tig0028837:14339-14358 | Msa1439700:CDS | 30.0% |
| ATAGAGCTCAAAAAGTTTAG+GGG | + | tig0028837:14593-14612 | None:intergenic | 30.0% | |
| ! | TTTTGATGGAAGAACACAAA+AGG | - | tig0028837:14662-14681 | Msa1439700:CDS | 30.0% |
| TTTGATGGAAGAACACAAAA+GGG | - | tig0028837:14663-14682 | Msa1439700:CDS | 30.0% | |
| !! | CAATGAGTTCTAAAATCCAT+TGG | + | tig0028837:14805-14824 | None:intergenic | 30.0% |
| !!! | CAATGGATTTTAGAACTCAT+TGG | - | tig0028837:14803-14822 | Msa1439700:CDS | 30.0% |
| ! | TTGTTTCTTGGAATTCTGAA+TGG | - | tig0028837:14893-14912 | Msa1439700:CDS | 30.0% |
| TGTTTCTTGGAATTCTGAAT+GGG | - | tig0028837:14894-14913 | Msa1439700:CDS | 30.0% | |
| ACAGGAAATTTCAAAGGAAA+TGG | + | tig0028837:15003-15022 | None:intergenic | 30.0% | |
| !!! | TGCACCCTTTTAAAATTTAC+AGG | + | tig0028837:15021-15040 | None:intergenic | 30.0% |
| ! | AAAAGGGTGCATAGTTATTA+TGG | - | tig0028837:15030-15049 | Msa1439700:CDS | 30.0% |
| AGATAAAAATGTTTCAGGAG+AGG | - | tig0028837:15058-15077 | Msa1439700:CDS | 30.0% | |
| ! | TTATCGAATTCTAAAGAACC+AGG | + | tig0028837:15123-15142 | None:intergenic | 30.0% |
| !! | GTTCTTTAGAATTCGATAAG+AGG | - | tig0028837:15124-15143 | Msa1439700:CDS | 30.0% |
| !!! | TTAGTTTTACAGTTGAGAAG+AGG | - | tig0028837:15172-15191 | Msa1439700:CDS | 30.0% |
| !!! | AATCTCCTTTGTTTTTATGG+AGG | - | tig0028837:15358-15377 | Msa1439700:CDS | 30.0% |
| !!! | ATCTCCTTTGTTTTTATGGA+GGG | - | tig0028837:15359-15378 | Msa1439700:CDS | 30.0% |
| ! | AAAATTGCTGTTATTCGCAT+TGG | - | tig0028837:14338-14357 | Msa1439700:CDS | 30.0% |
| ! | AAATTGCTGTTATTCGCATT+GGG | - | tig0028837:14339-14358 | Msa1439700:CDS | 30.0% |
| ATAGAGCTCAAAAAGTTTAG+GGG | + | tig0028837:14593-14612 | None:intergenic | 30.0% | |
| ! | TTTTGATGGAAGAACACAAA+AGG | - | tig0028837:14662-14681 | Msa1439700:CDS | 30.0% |
| TTTGATGGAAGAACACAAAA+GGG | - | tig0028837:14663-14682 | Msa1439700:CDS | 30.0% | |
| !! | CAATGAGTTCTAAAATCCAT+TGG | + | tig0028837:14805-14824 | None:intergenic | 30.0% |
| !!! | CAATGGATTTTAGAACTCAT+TGG | - | tig0028837:14803-14822 | Msa1439700:CDS | 30.0% |
| ! | TTGTTTCTTGGAATTCTGAA+TGG | - | tig0028837:14893-14912 | Msa1439700:CDS | 30.0% |
| TGTTTCTTGGAATTCTGAAT+GGG | - | tig0028837:14894-14913 | Msa1439700:CDS | 30.0% | |
| ACAGGAAATTTCAAAGGAAA+TGG | + | tig0028837:15003-15022 | None:intergenic | 30.0% | |
| !!! | TGCACCCTTTTAAAATTTAC+AGG | + | tig0028837:15021-15040 | None:intergenic | 30.0% |
| ! | AAAAGGGTGCATAGTTATTA+TGG | - | tig0028837:15030-15049 | Msa1439700:CDS | 30.0% |
| AGATAAAAATGTTTCAGGAG+AGG | - | tig0028837:15058-15077 | Msa1439700:CDS | 30.0% | |
| ! | TTATCGAATTCTAAAGAACC+AGG | + | tig0028837:15123-15142 | None:intergenic | 30.0% |
| !! | GTTCTTTAGAATTCGATAAG+AGG | - | tig0028837:15124-15143 | Msa1439700:CDS | 30.0% |
| !!! | TTAGTTTTACAGTTGAGAAG+AGG | - | tig0028837:15172-15191 | Msa1439700:CDS | 30.0% |
| !!! | AATCTCCTTTGTTTTTATGG+AGG | - | tig0028837:15358-15377 | Msa1439700:CDS | 30.0% |
| !!! | ATCTCCTTTGTTTTTATGGA+GGG | - | tig0028837:15359-15378 | Msa1439700:CDS | 30.0% |
| ! | GATTCATAGCAATCGATTCA+TGG | - | tig0028837:14311-14330 | Msa1439700:CDS | 35.0% |
| AAGATCGAAGCAAGAAGAAA+AGG | - | tig0028837:14392-14411 | Msa1439700:CDS | 35.0% | |
| AGATCGAAGCAAGAAGAAAA+GGG | - | tig0028837:14393-14412 | Msa1439700:CDS | 35.0% | |
| TAATGTGAAAGAGATCGAAC+TGG | + | tig0028837:14514-14533 | None:intergenic | 35.0% | |
| AGAAAATCAGAGATTCTGTG+AGG | + | tig0028837:14562-14581 | None:intergenic | 35.0% | |
| !! | GCAAAAAGCTGAAGTTTTGA+TGG | - | tig0028837:14648-14667 | Msa1439700:CDS | 35.0% |
| AAGCTGCTGAATATGTTACT+AGG | - | tig0028837:14707-14726 | Msa1439700:CDS | 35.0% | |
| TACTAGGTTGCTTATGATGT+CGG | - | tig0028837:14723-14742 | Msa1439700:CDS | 35.0% | |
| !!! | AAGAGATTTTGGTTTGCCAA+TGG | - | tig0028837:14786-14805 | Msa1439700:CDS | 35.0% |
| ! | TCTTGACGATGTTGAGTTTT+TGG | - | tig0028837:14867-14886 | Msa1439700:CDS | 35.0% |
| !!! | AGTTTTTGGAGCTTGTTTCT+TGG | - | tig0028837:14881-14900 | Msa1439700:CDS | 35.0% |
| GAAGAAGAATAAGACGATTG+TGG | - | tig0028837:14933-14952 | Msa1439700:CDS | 35.0% | |
| AAGAATAAGACGATTGTGGA+AGG | - | tig0028837:14937-14956 | Msa1439700:CDS | 35.0% | |
| AGAATAAGACGATTGTGGAA+GGG | - | tig0028837:14938-14957 | Msa1439700:CDS | 35.0% | |
| ! | TTTTACAGTTGAGAAGAGGT+TGG | - | tig0028837:15176-15195 | Msa1439700:CDS | 35.0% |
| ! | AGGCTTTTGCTTAAACATTG+TGG | - | tig0028837:15255-15274 | Msa1439700:CDS | 35.0% |
| AACAGAAGCTTATGATGGTT+CGG | - | tig0028837:15323-15342 | Msa1439700:CDS | 35.0% | |
| TTCTCCCTCCATAAAAACAA+AGG | + | tig0028837:15366-15385 | None:intergenic | 35.0% | |
| !! | ATTCTGAGATGGATGTTAGA+GGG | - | tig0028837:15565-15584 | Msa1439700:CDS | 35.0% |
| ! | GATTCATAGCAATCGATTCA+TGG | - | tig0028837:14311-14330 | Msa1439700:CDS | 35.0% |
| AAGATCGAAGCAAGAAGAAA+AGG | - | tig0028837:14392-14411 | Msa1439700:CDS | 35.0% | |
| AGATCGAAGCAAGAAGAAAA+GGG | - | tig0028837:14393-14412 | Msa1439700:CDS | 35.0% | |
| TAATGTGAAAGAGATCGAAC+TGG | + | tig0028837:14514-14533 | None:intergenic | 35.0% | |
| AGAAAATCAGAGATTCTGTG+AGG | + | tig0028837:14562-14581 | None:intergenic | 35.0% | |
| !! | GCAAAAAGCTGAAGTTTTGA+TGG | - | tig0028837:14648-14667 | Msa1439700:CDS | 35.0% |
| AAGCTGCTGAATATGTTACT+AGG | - | tig0028837:14707-14726 | Msa1439700:CDS | 35.0% | |
| TACTAGGTTGCTTATGATGT+CGG | - | tig0028837:14723-14742 | Msa1439700:CDS | 35.0% | |
| !!! | AAGAGATTTTGGTTTGCCAA+TGG | - | tig0028837:14786-14805 | Msa1439700:CDS | 35.0% |
| ! | TCTTGACGATGTTGAGTTTT+TGG | - | tig0028837:14867-14886 | Msa1439700:CDS | 35.0% |
| !!! | AGTTTTTGGAGCTTGTTTCT+TGG | - | tig0028837:14881-14900 | Msa1439700:CDS | 35.0% |
| GAAGAAGAATAAGACGATTG+TGG | - | tig0028837:14933-14952 | Msa1439700:CDS | 35.0% | |
| AAGAATAAGACGATTGTGGA+AGG | - | tig0028837:14937-14956 | Msa1439700:CDS | 35.0% | |
| AGAATAAGACGATTGTGGAA+GGG | - | tig0028837:14938-14957 | Msa1439700:CDS | 35.0% | |
| ! | TTTTACAGTTGAGAAGAGGT+TGG | - | tig0028837:15176-15195 | Msa1439700:CDS | 35.0% |
| ! | AGGCTTTTGCTTAAACATTG+TGG | - | tig0028837:15255-15274 | Msa1439700:CDS | 35.0% |
| AACAGAAGCTTATGATGGTT+CGG | - | tig0028837:15323-15342 | Msa1439700:CDS | 35.0% | |
| TTCTCCCTCCATAAAAACAA+AGG | + | tig0028837:15366-15385 | None:intergenic | 35.0% | |
| !! | ATTCTGAGATGGATGTTAGA+GGG | - | tig0028837:15565-15584 | Msa1439700:CDS | 35.0% |
| TCTCGAACAAGAACCAGAAA+TGG | - | tig0028837:14483-14502 | Msa1439700:CDS | 40.0% | |
| CGAACTGGAATAACCATTTC+TGG | + | tig0028837:14499-14518 | None:intergenic | 40.0% | |
| !!! | AGATTCTGTGAGGTTTTGGA+AGG | + | tig0028837:14552-14571 | None:intergenic | 40.0% |
| ! | TCAGAGATTCTGTGAGGTTT+TGG | + | tig0028837:14556-14575 | None:intergenic | 40.0% |
| GAGCTCTATAAGGATCGTAA+CGG | - | tig0028837:14604-14623 | Msa1439700:CDS | 40.0% | |
| AGCTCTATAAGGATCGTAAC+GGG | - | tig0028837:14605-14624 | Msa1439700:CDS | 40.0% | |
| !! | GGTTGATAAACGTGTTCAGT+TGG | - | tig0028837:14744-14763 | Msa1439700:CDS | 40.0% |
| ! | GCGCATTTTCGAAGAGATTT+TGG | - | tig0028837:14775-14794 | Msa1439700:CDS | 40.0% |
| !!! | GTATCCTCAACTTTTTCGTG+TGG | - | tig0028837:14834-14853 | Msa1439700:CDS | 40.0% |
| TTCACCACACGAAAAAGTTG+AGG | + | tig0028837:14841-14860 | None:intergenic | 40.0% | |
| AACTCAACATCGTCAAGAGA+AGG | + | tig0028837:14865-14884 | None:intergenic | 40.0% | |
| CTTCTTCTCAATCTCTGTGA+TGG | + | tig0028837:14920-14939 | None:intergenic | 40.0% | |
| GAATAAGACGATTGTGGAAG+GGG | - | tig0028837:14939-14958 | Msa1439700:CDS | 40.0% | |
| TCTCCTTATGCTGATGCAAA+GGG | - | tig0028837:15090-15109 | Msa1439700:CDS | 40.0% | |
| AAACCCTTTGCATCAGCATA+AGG | + | tig0028837:15096-15115 | None:intergenic | 40.0% | |
| !! | TTATGCCTCAGAAGTTGATG+AGG | - | tig0028837:15235-15254 | Msa1439700:CDS | 40.0% |
| AAAAGCCTCATCAACTTCTG+AGG | + | tig0028837:15243-15262 | None:intergenic | 40.0% | |
| !! | GAGAAGCTTCTTAGTCTTGT+TGG | - | tig0028837:15381-15400 | Msa1439700:CDS | 40.0% |
| !! | CTTAGTCTTGTTGGCTATAG+AGG | - | tig0028837:15390-15409 | Msa1439700:CDS | 40.0% |
| AGGAAGGAAGAAGAAGTTTG+AGG | - | tig0028837:15410-15429 | Msa1439700:CDS | 40.0% | |
| AAGGAAGAAGAAGTTTGAGG+CGG | - | tig0028837:15413-15432 | Msa1439700:CDS | 40.0% | |
| ! | GATAGTGATAGTGATGAGGA+AGG | - | tig0028837:15435-15454 | Msa1439700:CDS | 40.0% |
| TAAAGGATCCTTGTACTCCA+AGG | + | tig0028837:15535-15554 | None:intergenic | 40.0% | |
| !! | GATTCTGAGATGGATGTTAG+AGG | - | tig0028837:15564-15583 | Msa1439700:CDS | 40.0% |
| TCTCGAACAAGAACCAGAAA+TGG | - | tig0028837:14483-14502 | Msa1439700:CDS | 40.0% | |
| CGAACTGGAATAACCATTTC+TGG | + | tig0028837:14499-14518 | None:intergenic | 40.0% | |
| !!! | AGATTCTGTGAGGTTTTGGA+AGG | + | tig0028837:14552-14571 | None:intergenic | 40.0% |
| ! | TCAGAGATTCTGTGAGGTTT+TGG | + | tig0028837:14556-14575 | None:intergenic | 40.0% |
| GAGCTCTATAAGGATCGTAA+CGG | - | tig0028837:14604-14623 | Msa1439700:CDS | 40.0% | |
| AGCTCTATAAGGATCGTAAC+GGG | - | tig0028837:14605-14624 | Msa1439700:CDS | 40.0% | |
| !! | GGTTGATAAACGTGTTCAGT+TGG | - | tig0028837:14744-14763 | Msa1439700:CDS | 40.0% |
| ! | GCGCATTTTCGAAGAGATTT+TGG | - | tig0028837:14775-14794 | Msa1439700:CDS | 40.0% |
| !!! | GTATCCTCAACTTTTTCGTG+TGG | - | tig0028837:14834-14853 | Msa1439700:CDS | 40.0% |
| TTCACCACACGAAAAAGTTG+AGG | + | tig0028837:14841-14860 | None:intergenic | 40.0% | |
| AACTCAACATCGTCAAGAGA+AGG | + | tig0028837:14865-14884 | None:intergenic | 40.0% | |
| CTTCTTCTCAATCTCTGTGA+TGG | + | tig0028837:14920-14939 | None:intergenic | 40.0% | |
| GAATAAGACGATTGTGGAAG+GGG | - | tig0028837:14939-14958 | Msa1439700:CDS | 40.0% | |
| TCTCCTTATGCTGATGCAAA+GGG | - | tig0028837:15090-15109 | Msa1439700:CDS | 40.0% | |
| AAACCCTTTGCATCAGCATA+AGG | + | tig0028837:15096-15115 | None:intergenic | 40.0% | |
| !! | TTATGCCTCAGAAGTTGATG+AGG | - | tig0028837:15235-15254 | Msa1439700:CDS | 40.0% |
| AAAAGCCTCATCAACTTCTG+AGG | + | tig0028837:15243-15262 | None:intergenic | 40.0% | |
| !! | GAGAAGCTTCTTAGTCTTGT+TGG | - | tig0028837:15381-15400 | Msa1439700:CDS | 40.0% |
| !! | CTTAGTCTTGTTGGCTATAG+AGG | - | tig0028837:15390-15409 | Msa1439700:CDS | 40.0% |
| AGGAAGGAAGAAGAAGTTTG+AGG | - | tig0028837:15410-15429 | Msa1439700:CDS | 40.0% | |
| AAGGAAGAAGAAGTTTGAGG+CGG | - | tig0028837:15413-15432 | Msa1439700:CDS | 40.0% | |
| ! | GATAGTGATAGTGATGAGGA+AGG | - | tig0028837:15435-15454 | Msa1439700:CDS | 40.0% |
| TAAAGGATCCTTGTACTCCA+AGG | + | tig0028837:15535-15554 | None:intergenic | 40.0% | |
| !! | GATTCTGAGATGGATGTTAG+AGG | - | tig0028837:15564-15583 | Msa1439700:CDS | 40.0% |
| GTTATTCGCATTGGGAACGA+TGG | - | tig0028837:14347-14366 | Msa1439700:CDS | 45.0% | |
| TCGAAGCAGCAACAGAGAAA+TGG | - | tig0028837:14425-14444 | Msa1439700:CDS | 45.0% | |
| GCTCTATAAGGATCGTAACG+GGG | - | tig0028837:14606-14625 | Msa1439700:CDS | 45.0% | |
| ! | AATGGTAGCGAAAGCAAACC+CGG | + | tig0028837:14985-15004 | None:intergenic | 45.0% |
| GTCTCCTTATGCTGATGCAA+AGG | - | tig0028837:15089-15108 | Msa1439700:CDS | 45.0% | |
| ! | GATGCAAAGGGTTTGAAACC+TGG | - | tig0028837:15102-15121 | Msa1439700:CDS | 45.0% |
| ATCACCTAACTCACTTCCGT+TGG | - | tig0028837:15205-15224 | Msa1439700:CDS | 45.0% | |
| TCACCTAACTCACTTCCGTT+GGG | - | tig0028837:15206-15225 | Msa1439700:CDS | 45.0% | |
| GAGGCATAACTAACTCCCAA+CGG | + | tig0028837:15224-15243 | None:intergenic | 45.0% | |
| ! | ATGTTTCTGAGAGGGGTAAG+AGG | - | tig0028837:15286-15305 | Msa1439700:CDS | 45.0% |
| ! | GTCTTGTTGGCTATAGAGGA+AGG | - | tig0028837:15394-15413 | Msa1439700:CDS | 45.0% |
| ! | AGTGATAGTGATGAGGAAGG+CGG | - | tig0028837:15438-15457 | Msa1439700:CDS | 45.0% |
| GCTTCAGAGTGATTCTGATG+TGG | - | tig0028837:15476-15495 | Msa1439700:CDS | 45.0% | |
| TCAGAGTGATTCTGATGTGG+AGG | - | tig0028837:15479-15498 | Msa1439700:CDS | 45.0% | |
| TGATTCTGATGTGGAGGACT+TGG | - | tig0028837:15485-15504 | Msa1439700:CDS | 45.0% | |
| ACAGGATACCTTGGAGTACA+AGG | - | tig0028837:15524-15543 | Msa1439700:CDS | 45.0% | |
| GTACAAGGATCCTTTACTCG+AGG | - | tig0028837:15539-15558 | Msa1439700:CDS | 45.0% | |
| TCAGAATCGTCCTCGAGTAA+AGG | + | tig0028837:15552-15571 | None:intergenic | 45.0% | |
| GTTATTCGCATTGGGAACGA+TGG | - | tig0028837:14347-14366 | Msa1439700:CDS | 45.0% | |
| TCGAAGCAGCAACAGAGAAA+TGG | - | tig0028837:14425-14444 | Msa1439700:CDS | 45.0% | |
| GCTCTATAAGGATCGTAACG+GGG | - | tig0028837:14606-14625 | Msa1439700:CDS | 45.0% | |
| ! | AATGGTAGCGAAAGCAAACC+CGG | + | tig0028837:14985-15004 | None:intergenic | 45.0% |
| GTCTCCTTATGCTGATGCAA+AGG | - | tig0028837:15089-15108 | Msa1439700:CDS | 45.0% | |
| ! | GATGCAAAGGGTTTGAAACC+TGG | - | tig0028837:15102-15121 | Msa1439700:CDS | 45.0% |
| ATCACCTAACTCACTTCCGT+TGG | - | tig0028837:15205-15224 | Msa1439700:CDS | 45.0% | |
| TCACCTAACTCACTTCCGTT+GGG | - | tig0028837:15206-15225 | Msa1439700:CDS | 45.0% | |
| GAGGCATAACTAACTCCCAA+CGG | + | tig0028837:15224-15243 | None:intergenic | 45.0% | |
| ! | ATGTTTCTGAGAGGGGTAAG+AGG | - | tig0028837:15286-15305 | Msa1439700:CDS | 45.0% |
| ! | GTCTTGTTGGCTATAGAGGA+AGG | - | tig0028837:15394-15413 | Msa1439700:CDS | 45.0% |
| ! | AGTGATAGTGATGAGGAAGG+CGG | - | tig0028837:15438-15457 | Msa1439700:CDS | 45.0% |
| GCTTCAGAGTGATTCTGATG+TGG | - | tig0028837:15476-15495 | Msa1439700:CDS | 45.0% | |
| TCAGAGTGATTCTGATGTGG+AGG | - | tig0028837:15479-15498 | Msa1439700:CDS | 45.0% | |
| TGATTCTGATGTGGAGGACT+TGG | - | tig0028837:15485-15504 | Msa1439700:CDS | 45.0% | |
| ACAGGATACCTTGGAGTACA+AGG | - | tig0028837:15524-15543 | Msa1439700:CDS | 45.0% | |
| GTACAAGGATCCTTTACTCG+AGG | - | tig0028837:15539-15558 | Msa1439700:CDS | 45.0% | |
| TCAGAATCGTCCTCGAGTAA+AGG | + | tig0028837:15552-15571 | None:intergenic | 45.0% | |
| ! | AGGATCGTAACGGGGTGTTA+TGG | - | tig0028837:14614-14633 | Msa1439700:CDS | 50.0% |
| AACTGAAACCGAACACACCC+CGG | - | tig0028837:14963-14982 | Msa1439700:CDS | 50.0% | |
| ! | ATGGTAGCGAAAGCAAACCC+GGG | + | tig0028837:14984-15003 | None:intergenic | 50.0% |
| ACTCCCAACGGAAGTGAGTT+AGG | + | tig0028837:15212-15231 | None:intergenic | 50.0% | |
| ! | GGCGGATAGTGATAGTGATG+AGG | - | tig0028837:15431-15450 | Msa1439700:CDS | 50.0% |
| TGATGTGGAGGACTTGGATG+TGG | - | tig0028837:15491-15510 | Msa1439700:CDS | 50.0% | |
| GCTTGAGCAACAGGATACCT+TGG | - | tig0028837:15515-15534 | Msa1439700:CDS | 50.0% | |
| ! | ACTCGAGGACGATTCTGAGA+TGG | - | tig0028837:15554-15573 | Msa1439700:CDS | 50.0% |
| ! | AGGATCGTAACGGGGTGTTA+TGG | - | tig0028837:14614-14633 | Msa1439700:CDS | 50.0% |
| AACTGAAACCGAACACACCC+CGG | - | tig0028837:14963-14982 | Msa1439700:CDS | 50.0% | |
| ! | ATGGTAGCGAAAGCAAACCC+GGG | + | tig0028837:14984-15003 | None:intergenic | 50.0% |
| ACTCCCAACGGAAGTGAGTT+AGG | + | tig0028837:15212-15231 | None:intergenic | 50.0% | |
| ! | GGCGGATAGTGATAGTGATG+AGG | - | tig0028837:15431-15450 | Msa1439700:CDS | 50.0% |
| TGATGTGGAGGACTTGGATG+TGG | - | tig0028837:15491-15510 | Msa1439700:CDS | 50.0% | |
| GCTTGAGCAACAGGATACCT+TGG | - | tig0028837:15515-15534 | Msa1439700:CDS | 50.0% | |
| ! | ACTCGAGGACGATTCTGAGA+TGG | - | tig0028837:15554-15573 | Msa1439700:CDS | 50.0% |
| ! | CGTAACGGGGTGTTATGGTG+TGG | - | tig0028837:14619-14638 | Msa1439700:CDS | 55.0% |
| ACTGAAACCGAACACACCCC+GGG | - | tig0028837:14964-14983 | Msa1439700:CDS | 55.0% | |
| AAGCAAACCCGGGGTGTGTT+CGG | + | tig0028837:14974-14993 | None:intergenic | 55.0% | |
| ! | TGGTAGCGAAAGCAAACCCG+GGG | + | tig0028837:14983-15002 | None:intergenic | 55.0% |
| AGTGATGAGGAAGGCGGTGA+TGG | - | tig0028837:15444-15463 | Msa1439700:CDS | 55.0% | |
| GGATGTGGAGCTTGAGCAAC+AGG | - | tig0028837:15506-15525 | Msa1439700:CDS | 55.0% | |
| ! | CGTAACGGGGTGTTATGGTG+TGG | - | tig0028837:14619-14638 | Msa1439700:CDS | 55.0% |
| ACTGAAACCGAACACACCCC+GGG | - | tig0028837:14964-14983 | Msa1439700:CDS | 55.0% | |
| AAGCAAACCCGGGGTGTGTT+CGG | + | tig0028837:14974-14993 | None:intergenic | 55.0% | |
| ! | TGGTAGCGAAAGCAAACCCG+GGG | + | tig0028837:14983-15002 | None:intergenic | 55.0% |
| AGTGATGAGGAAGGCGGTGA+TGG | - | tig0028837:15444-15463 | Msa1439700:CDS | 55.0% | |
| GGATGTGGAGCTTGAGCAAC+AGG | - | tig0028837:15506-15525 | Msa1439700:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028837 | gene | 14301 | 15596 | 14301 | ID=Msa1439700;Name=Msa1439700 |
| tig0028837 | mRNA | 14301 | 15596 | 14301 | ID=Msa1439700-mRNA-1;Parent=Msa1439700;Name=Msa1439700-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|-1|0|1|-1|1|1|0|431 |
| tig0028837 | exon | 14301 | 15596 | 14301 | ID=Msa1439700-mRNA-1:exon:11929;Parent=Msa1439700-mRNA-1 |
| tig0028837 | CDS | 14301 | 15596 | 14301 | ID=Msa1439700-mRNA-1:cds;Parent=Msa1439700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
