Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382270 | RHN70535.1 | 97.912 | 431 | 9 | 0 | 1 | 431 | 1 | 431 | 0.0 | 871 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382270 | sp|A0MFS5|WTF1_ARATH | 36.504 | 389 | 208 | 9 | 17 | 386 | 56 | 424 | 2.00e-58 | 202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382270 | A0A396J2B4 | 97.912 | 431 | 9 | 0 | 1 | 431 | 1 | 431 | 0.0 | 871 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035120 | Msa0382270 | 0.808012 | 3.816286e-50 | -8.615850e-47 |
| Msa0041720 | Msa0382270 | 0.825814 | 3.817684e-54 | -8.615850e-47 |
| Msa0056450 | Msa0382270 | 0.813658 | 2.289338e-51 | -8.615850e-47 |
| Msa0057370 | Msa0382270 | 0.805303 | 1.424687e-49 | -8.615850e-47 |
| Msa0104700 | Msa0382270 | 0.829813 | 4.171557e-55 | -8.615850e-47 |
| Msa0108390 | Msa0382270 | 0.816176 | 6.328964e-52 | -8.615850e-47 |
| Msa0116770 | Msa0382270 | 0.802559 | 5.297710e-49 | -8.615850e-47 |
| Msa0140500 | Msa0382270 | -0.805557 | 1.260040e-49 | -8.615850e-47 |
| Msa0144360 | Msa0382270 | 0.801153 | 1.029776e-48 | -8.615850e-47 |
| Msa0160670 | Msa0382270 | 0.806450 | 8.176915e-50 | -8.615850e-47 |
| Msa0183760 | Msa0382270 | 0.807751 | 4.336491e-50 | -8.615850e-47 |
| Msa0187030 | Msa0382270 | 0.823454 | 1.372950e-53 | -8.615850e-47 |
| Msa0204840 | Msa0382270 | 0.805555 | 1.261574e-49 | -8.615850e-47 |
| Msa0212990 | Msa0382270 | 0.809996 | 1.435631e-50 | -8.615850e-47 |
| Msa0217700 | Msa0382270 | 0.800599 | 1.336173e-48 | -8.615850e-47 |
| Msa0225220 | Msa0382270 | 0.828177 | 1.039034e-54 | -8.615850e-47 |
| Msa0230150 | Msa0382270 | 0.806601 | 7.599128e-50 | -8.615850e-47 |
| Msa0367870 | Msa0382270 | 0.812085 | 5.063368e-51 | -8.615850e-47 |
| Msa0381610 | Msa0382270 | -0.835413 | 1.702682e-56 | -8.615850e-47 |
| Msa0382260 | Msa0382270 | 0.840256 | 9.703025e-58 | -8.615850e-47 |
| Msa0382270 | Msa0403660 | 0.811758 | 5.965331e-51 | -8.615850e-47 |
| Msa0382270 | Msa0405130 | 0.800860 | 1.181995e-48 | -8.615850e-47 |
| Msa0382270 | Msa0406770 | 0.811265 | 7.631955e-51 | -8.615850e-47 |
| Msa0382270 | Msa0410650 | 0.800099 | 1.689349e-48 | -8.615850e-47 |
| Msa0382270 | Msa0423040 | 0.802813 | 4.694526e-49 | -8.615850e-47 |
| Msa0382270 | Msa0431780 | 0.876341 | 1.507633e-68 | -8.615850e-47 |
| Msa0382270 | Msa0432770 | 0.804026 | 2.632187e-49 | -8.615850e-47 |
| Msa0382270 | Msa0433410 | -0.801443 | 8.983441e-49 | -8.615850e-47 |
| Msa0382270 | Msa0455740 | 0.806173 | 9.355341e-50 | -8.615850e-47 |
| Msa0382270 | Msa0455760 | 0.815168 | 1.061253e-51 | -8.615850e-47 |
| Msa0382270 | Msa0479200 | 0.807319 | 5.355771e-50 | -8.615850e-47 |
| Msa0382270 | Msa0480000 | 0.831668 | 1.464823e-55 | -8.615850e-47 |
| Msa0382270 | Msa0485240 | 0.806966 | 6.364442e-50 | -8.615850e-47 |
| Msa0382270 | Msa0495330 | 0.812474 | 4.162487e-51 | -8.615850e-47 |
| Msa0382270 | Msa0512870 | 0.803873 | 2.831564e-49 | -8.615850e-47 |
| Msa0382270 | Msa0520700 | 0.802135 | 6.477873e-49 | -8.615850e-47 |
| Msa0382270 | Msa0520710 | 0.996872 | 1.943526e-233 | -8.615850e-47 |
| Msa0382270 | Msa0544660 | 0.812956 | 3.265037e-51 | -8.615850e-47 |
| Msa0382270 | Msa0559500 | 0.810903 | 9.145216e-51 | -8.615850e-47 |
| Msa0382270 | Msa0579660 | 0.807025 | 6.182772e-50 | -8.615850e-47 |
| Msa0382270 | Msa0597000 | 0.800683 | 1.284639e-48 | -8.615850e-47 |
| Msa0382270 | Msa0598160 | 0.803841 | 2.875700e-49 | -8.615850e-47 |
| Msa0382270 | Msa0615010 | 0.820194 | 7.802373e-53 | -8.615850e-47 |
| Msa0382270 | Msa0615220 | 0.803353 | 3.630717e-49 | -8.615850e-47 |
| Msa0382270 | Msa0620620 | 0.808803 | 2.588027e-50 | -8.615850e-47 |
| Msa0382270 | Msa0633700 | 0.802576 | 5.254483e-49 | -8.615850e-47 |
| Msa0382270 | Msa0637900 | 0.805231 | 1.474875e-49 | -8.615850e-47 |
| Msa0382270 | Msa0648240 | -0.801351 | 9.381552e-49 | -8.615850e-47 |
| Msa0382270 | Msa0661320 | 0.806181 | 9.318648e-50 | -8.615850e-47 |
| Msa0382270 | Msa0693380 | 0.811237 | 7.741974e-51 | -8.615850e-47 |
| Msa0382270 | Msa0711790 | 0.802356 | 5.831953e-49 | -8.615850e-47 |
| Msa0382270 | Msa0716860 | 0.802773 | 4.785343e-49 | -8.615850e-47 |
| Msa0382270 | Msa0723990 | 0.830720 | 2.504940e-55 | -8.615850e-47 |
| Msa0382270 | Msa0751260 | 0.836396 | 9.593305e-57 | -8.615850e-47 |
| Msa0382270 | Msa0764570 | 0.822113 | 2.818024e-53 | -8.615850e-47 |
| Msa0382270 | Msa0770360 | 0.810930 | 9.020904e-51 | -8.615850e-47 |
| Msa0382270 | Msa0784410 | 0.801311 | 9.561514e-49 | -8.615850e-47 |
| Msa0382270 | Msa0789100 | 0.806520 | 7.906244e-50 | -8.615850e-47 |
| Msa0382270 | Msa0795070 | 0.826288 | 2.945138e-54 | -8.615850e-47 |
| Msa0382270 | Msa0797770 | 0.810259 | 1.259844e-50 | -8.615850e-47 |
| Msa0382270 | Msa0800700 | 0.804623 | 1.976570e-49 | -8.615850e-47 |
| Msa0382270 | Msa0817460 | 0.804123 | 2.512971e-49 | -8.615850e-47 |
| Msa0382270 | Msa0826760 | 0.810653 | 1.035613e-50 | -8.615850e-47 |
| Msa0382270 | Msa0830530 | 0.800147 | 1.651717e-48 | -8.615850e-47 |
| Msa0382270 | Msa0835230 | 0.803860 | 2.849831e-49 | -8.615850e-47 |
| Msa0382270 | Msa0868160 | 0.808418 | 3.128100e-50 | -8.615850e-47 |
| Msa0382270 | Msa0868440 | 0.805816 | 1.112183e-49 | -8.615850e-47 |
| Msa0382270 | Msa0900620 | 0.818721 | 1.690549e-52 | -8.615850e-47 |
| Msa0382270 | Msa0936390 | 0.829288 | 5.597399e-55 | -8.615850e-47 |
| Msa0382270 | Msa0975220 | 0.800197 | 1.613248e-48 | -8.615850e-47 |
| Msa0382270 | Msa1034500 | 0.818542 | 1.856107e-52 | -8.615850e-47 |
| Msa0382270 | Msa1038080 | 0.828436 | 9.002484e-55 | -8.615850e-47 |
| Msa0382270 | Msa1080800 | 0.800474 | 1.416865e-48 | -8.615850e-47 |
| Msa0382270 | Msa1082500 | 0.808673 | 2.759329e-50 | -8.615850e-47 |
| Msa0382270 | Msa1104090 | 0.807427 | 5.082086e-50 | -8.615850e-47 |
| Msa0382270 | Msa1137570 | 0.802016 | 6.853236e-49 | -8.615850e-47 |
| Msa0382270 | Msa1142670 | 0.805799 | 1.121276e-49 | -8.615850e-47 |
| Msa0382270 | Msa1157570 | 0.805088 | 1.580548e-49 | -8.615850e-47 |
| Msa0382270 | Msa1163540 | 0.809368 | 1.959182e-50 | -8.615850e-47 |
| Msa0382270 | Msa1164590 | 0.800945 | 1.135684e-48 | -8.615850e-47 |
| Msa0382270 | Msa1220870 | 0.802797 | 4.731193e-49 | -8.615850e-47 |
| Msa0382270 | Msa1243870 | 0.803805 | 2.925746e-49 | -8.615850e-47 |
| Msa0382270 | Msa1344340 | 0.810724 | 9.998794e-51 | -8.615850e-47 |
| Msa0382270 | Msa1408620 | -0.802690 | 4.978172e-49 | -8.615850e-47 |
| Msa0382270 | Msa1410420 | 0.809690 | 1.670301e-50 | -8.615850e-47 |
| Msa0382270 | Msa1415640 | 0.819021 | 1.445349e-52 | -8.615850e-47 |
| Msa0382270 | Msa1418240 | 0.812745 | 3.631895e-51 | -8.615850e-47 |
| Msa0382270 | Msa1423880 | 0.800462 | 1.425261e-48 | -8.615850e-47 |
| Msa0382270 | Msa1435070 | 0.984511 | 8.964407e-161 | -8.615850e-47 |
| Msa0382270 | Msa1435080 | 0.827560 | 1.462842e-54 | -8.615850e-47 |
| Msa0382270 | Msa1439700 | 0.980666 | 9.494960e-151 | -8.615850e-47 |
| Msa0382270 | Msa1439710 | 0.859011 | 5.554605e-63 | -8.615850e-47 |
| Msa0382270 | Msa1443060 | 0.805921 | 1.056674e-49 | -8.615850e-47 |
| Msa0382270 | Msa1445390 | -0.803552 | 3.300683e-49 | -8.615850e-47 |
| Msa0382270 | Msa1446780 | 0.820862 | 5.479792e-53 | -8.615850e-47 |
| Msa0382270 | Msa1449340 | -0.802090 | 6.615527e-49 | -8.615850e-47 |
| Msa0382270 | Msa1454530 | 0.811309 | 7.468714e-51 | -8.615850e-47 |
| Msa0382270 | Msa1459180 | 0.817040 | 4.053509e-52 | -8.615850e-47 |
| Msa0382270 | Msa1466540 | 0.805170 | 1.518868e-49 | -8.615850e-47 |
| Msa0253290 | Msa0382270 | 0.818338 | 2.064612e-52 | -8.615850e-47 |
| Msa0264830 | Msa0382270 | 0.800785 | 1.224298e-48 | -8.615850e-47 |
| Msa0292120 | Msa0382270 | 0.803564 | 3.282866e-49 | -8.615850e-47 |
| Msa0308460 | Msa0382270 | 0.816541 | 5.243430e-52 | -8.615850e-47 |
| Msa0326520 | Msa0382270 | 0.818560 | 1.839471e-52 | -8.615850e-47 |
| Msa0330340 | Msa0382270 | 0.812964 | 3.251861e-51 | -8.615850e-47 |
| Msa0336310 | Msa0382270 | 0.802104 | 6.572266e-49 | -8.615850e-47 |
| Msa0340450 | Msa0382270 | 0.803178 | 3.946521e-49 | -8.615850e-47 |
| Msa0342010 | Msa0382270 | 0.832074 | 1.163121e-55 | -8.615850e-47 |
| Msa0358890 | Msa0382270 | 0.810821 | 9.526474e-51 | -8.615850e-47 |
| Msa0360210 | Msa0382270 | 0.813549 | 2.420020e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382270 | MtrunA17_Chr3g0136561 | 97.912 | 431 | 9 | 0 | 1 | 431 | 1 | 431 | 0.0 | 871 |
| Msa0382270 | MtrunA17_Chr6g0473071 | 97.680 | 431 | 10 | 0 | 1 | 431 | 8 | 438 | 0.0 | 863 |
| Msa0382270 | MtrunA17_Chr7g0275561 | 34.384 | 349 | 206 | 6 | 60 | 401 | 110 | 442 | 2.48e-50 | 178 |
| Msa0382270 | MtrunA17_Chr6g0462491 | 32.225 | 391 | 244 | 8 | 22 | 397 | 34 | 418 | 3.92e-49 | 173 |
| Msa0382270 | MtrunA17_Chr1g0185761 | 33.237 | 346 | 213 | 6 | 40 | 377 | 39 | 374 | 1.15e-45 | 162 |
| Msa0382270 | MtrunA17_Chr7g0255281 | 34.024 | 338 | 196 | 10 | 90 | 422 | 99 | 414 | 3.82e-45 | 162 |
| Msa0382270 | MtrunA17_Chr1g0161181 | 33.140 | 344 | 212 | 6 | 42 | 377 | 41 | 374 | 1.70e-44 | 159 |
| Msa0382270 | MtrunA17_Chr8g0381061 | 31.962 | 316 | 202 | 7 | 57 | 367 | 58 | 365 | 5.01e-41 | 150 |
| Msa0382270 | MtrunA17_Chr8g0358271 | 31.073 | 354 | 218 | 10 | 33 | 371 | 29 | 371 | 2.24e-39 | 145 |
| Msa0382270 | MtrunA17_Chr7g0268361 | 29.016 | 386 | 238 | 10 | 57 | 424 | 53 | 420 | 1.32e-38 | 144 |
| Msa0382270 | MtrunA17_Chr3g0088781 | 31.765 | 340 | 208 | 8 | 25 | 363 | 14 | 330 | 2.93e-38 | 143 |
| Msa0382270 | MtrunA17_Chr1g0153201 | 30.882 | 340 | 211 | 7 | 25 | 363 | 14 | 330 | 7.01e-38 | 142 |
| Msa0382270 | MtrunA17_Chr3g0115901 | 32.248 | 307 | 193 | 6 | 62 | 363 | 83 | 379 | 4.22e-36 | 137 |
| Msa0382270 | MtrunA17_Chr3g0088811 | 35.714 | 224 | 127 | 5 | 141 | 363 | 23 | 230 | 1.91e-33 | 127 |
| Msa0382270 | MtrunA17_Chr3g0121121 | 31.515 | 330 | 189 | 8 | 58 | 367 | 78 | 390 | 3.74e-33 | 130 |
| Msa0382270 | MtrunA17_Chr2g0311491 | 35.950 | 242 | 142 | 5 | 144 | 377 | 1 | 237 | 4.55e-32 | 124 |
| Msa0382270 | MtrunA17_Chr6g0467331 | 28.895 | 353 | 228 | 9 | 42 | 386 | 36 | 373 | 8.69e-31 | 125 |
| Msa0382270 | MtrunA17_Chr3g0109091 | 27.322 | 366 | 237 | 9 | 22 | 372 | 40 | 391 | 6.48e-30 | 120 |
| Msa0382270 | MtrunA17_Chr7g0220971 | 28.025 | 314 | 215 | 5 | 55 | 367 | 72 | 375 | 3.59e-28 | 115 |
| Msa0382270 | MtrunA17_Chr6g0462481 | 31.707 | 205 | 130 | 4 | 115 | 314 | 17 | 216 | 1.68e-22 | 95.1 |
| Msa0382270 | MtrunA17_Chr8g0389501 | 31.771 | 192 | 113 | 5 | 115 | 297 | 56 | 238 | 2.11e-15 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382270 | AT5G21970.1 | 66.667 | 390 | 121 | 5 | 20 | 408 | 39 | 420 | 0.0 | 521 |
| Msa0382270 | AT5G21970.2 | 66.667 | 390 | 121 | 5 | 20 | 408 | 39 | 420 | 0.0 | 521 |
| Msa0382270 | AT4G01037.1 | 36.504 | 389 | 208 | 9 | 17 | 386 | 56 | 424 | 2.03e-59 | 202 |
| Msa0382270 | AT3G63090.1 | 31.443 | 388 | 245 | 8 | 22 | 402 | 29 | 402 | 2.78e-48 | 170 |
| Msa0382270 | AT4G33495.1 | 33.773 | 379 | 223 | 11 | 25 | 388 | 38 | 403 | 1.91e-47 | 168 |
| Msa0382270 | AT5G48040.1 | 32.295 | 353 | 209 | 8 | 41 | 379 | 44 | 380 | 6.67e-45 | 161 |
| Msa0382270 | AT1G79120.1 | 31.653 | 357 | 222 | 6 | 38 | 382 | 64 | 410 | 4.57e-44 | 159 |
| Msa0382270 | AT1G79120.2 | 31.653 | 357 | 222 | 6 | 38 | 382 | 64 | 410 | 4.57e-44 | 159 |
| Msa0382270 | AT2G31290.1 | 31.285 | 358 | 217 | 7 | 37 | 387 | 29 | 364 | 1.14e-42 | 155 |
| Msa0382270 | AT2G31290.2 | 31.285 | 358 | 217 | 7 | 37 | 387 | 29 | 364 | 1.14e-42 | 155 |
| Msa0382270 | AT5G45790.2 | 31.421 | 366 | 223 | 9 | 17 | 372 | 48 | 395 | 4.27e-41 | 151 |
| Msa0382270 | AT5G45790.1 | 36.082 | 291 | 162 | 7 | 90 | 372 | 36 | 310 | 1.09e-40 | 148 |
| Msa0382270 | AT4G08940.1 | 31.529 | 314 | 194 | 6 | 57 | 363 | 83 | 382 | 1.54e-40 | 149 |
| Msa0382270 | AT5G62990.1 | 35.152 | 330 | 176 | 9 | 58 | 367 | 81 | 392 | 2.39e-40 | 150 |
| Msa0382270 | AT3G58520.1 | 32.827 | 329 | 202 | 8 | 56 | 372 | 55 | 376 | 4.83e-40 | 148 |
| Msa0382270 | AT1G06440.1 | 29.211 | 380 | 240 | 8 | 5 | 367 | 3 | 370 | 1.92e-36 | 138 |
| Msa0382270 | AT3G58520.2 | 34.138 | 290 | 174 | 7 | 95 | 372 | 80 | 364 | 3.98e-36 | 137 |
| Msa0382270 | AT1G71850.1 | 27.157 | 394 | 268 | 7 | 22 | 410 | 17 | 396 | 2.36e-34 | 134 |
| Msa0382270 | AT4G24320.1 | 28.767 | 292 | 195 | 6 | 91 | 375 | 78 | 363 | 2.43e-23 | 101 |
| Msa0382270 | AT2G39120.1 | 27.707 | 314 | 216 | 6 | 55 | 367 | 52 | 355 | 2.97e-23 | 101 |
Find 77 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAACTGGAATAACCATTTC+TGG | 0.211698 | 3_1:-84735605 | None:intergenic |
| AAAAGGGTGCATAGTTATTA+TGG | 0.236478 | 3_1:+84736139 | Msa0382270:CDS |
| TCAGAGATTCTGTGAGGTTT+TGG | 0.253264 | 3_1:-84735662 | None:intergenic |
| CTTAGTCTTGTTGGCTATAG+AGG | 0.357273 | 3_1:+84736499 | Msa0382270:CDS |
| GATTCATAGCAATCGATTCA+TGG | 0.376006 | 3_1:+84735420 | Msa0382270:CDS |
| TTGTTTCTTGGAATTCTGAA+TGG | 0.380201 | 3_1:+84736002 | Msa0382270:CDS |
| ACAGGAAATTTCAAAGGAAA+TGG | 0.381695 | 3_1:-84736109 | None:intergenic |
| GGATGTGGAGCTTGAGCAAC+AGG | 0.382512 | 3_1:+84736615 | Msa0382270:CDS |
| AAAATTGCTGTTATTCGCAT+TGG | 0.392112 | 3_1:+84735447 | Msa0382270:CDS |
| TTCACAAATTCAATGCGGTT+TGG | 0.393479 | 3_1:+84735398 | None:intergenic |
| AGCTCTATAAGGATCGTAAC+GGG | 0.395197 | 3_1:+84735714 | Msa0382270:CDS |
| GAGAAGCTTCTTAGTCTTGT+TGG | 0.399437 | 3_1:+84736490 | Msa0382270:CDS |
| AACAGAAGCTTATGATGGTT+CGG | 0.405777 | 3_1:+84736432 | Msa0382270:CDS |
| AAACCCTTTGCATCAGCATA+AGG | 0.409922 | 3_1:-84736202 | None:intergenic |
| AAGATCGAAGCAAGAAGAAA+AGG | 0.422615 | 3_1:+84735501 | Msa0382270:CDS |
| AAATTGCTGTTATTCGCATT+GGG | 0.423537 | 3_1:+84735448 | Msa0382270:CDS |
| ACTCCCAACGGAAGTGAGTT+AGG | 0.429164 | 3_1:-84736318 | None:intergenic |
| AAGCAAACCCGGGGTGTGTT+CGG | 0.431409 | 3_1:-84736080 | None:intergenic |
| ATGTTTCTGAGAGGGGTAAG+AGG | 0.440704 | 3_1:+84736395 | Msa0382270:CDS |
| AGGATCGTAACGGGGTGTTA+TGG | 0.444477 | 3_1:+84735723 | Msa0382270:CDS |
| TCTCCTTATGCTGATGCAAA+GGG | 0.446830 | 3_1:+84736199 | Msa0382270:CDS |
| TCGAAGCAGCAACAGAGAAA+TGG | 0.448143 | 3_1:+84735534 | Msa0382270:CDS |
| GTTCTTTAGAATTCGATAAG+AGG | 0.449761 | 3_1:+84736233 | Msa0382270:CDS |
| TGATTCTGATGTGGAGGACT+TGG | 0.465301 | 3_1:+84736594 | Msa0382270:CDS |
| GATTCTGAGATGGATGTTAG+AGG | 0.467647 | 3_1:+84736673 | Msa0382270:CDS |
| TCTCGAACAAGAACCAGAAA+TGG | 0.467938 | 3_1:+84735592 | Msa0382270:CDS |
| TGTTTCTTGGAATTCTGAAT+GGG | 0.470467 | 3_1:+84736003 | Msa0382270:CDS |
| CTTCTTCTCAATCTCTGTGA+TGG | 0.477726 | 3_1:-84736026 | None:intergenic |
| TAATGTGAAAGAGATCGAAC+TGG | 0.482436 | 3_1:-84735620 | None:intergenic |
| AGATCGAAGCAAGAAGAAAA+GGG | 0.484434 | 3_1:+84735502 | Msa0382270:CDS |
| GTCTCCTTATGCTGATGCAA+AGG | 0.487202 | 3_1:+84736198 | Msa0382270:CDS |
| GAATAAGACGATTGTGGAAG+GGG | 0.488073 | 3_1:+84736048 | Msa0382270:CDS |
| GAAGAAGAATAAGACGATTG+TGG | 0.490121 | 3_1:+84736042 | Msa0382270:CDS |
| AATGGTAGCGAAAGCAAACC+CGG | 0.509498 | 3_1:-84736091 | None:intergenic |
| AGGAAGGAAGAAGAAGTTTG+AGG | 0.519477 | 3_1:+84736519 | Msa0382270:CDS |
| TCAGAATCGTCCTCGAGTAA+AGG | 0.523469 | 3_1:-84736658 | None:intergenic |
| AAGAATAAGACGATTGTGGA+AGG | 0.524672 | 3_1:+84736046 | Msa0382270:CDS |
| TTCTTTAGAATTCGATAAGA+GGG | 0.527132 | 3_1:+84736234 | Msa0382270:CDS |
| TACTAGGTTGCTTATGATGT+CGG | 0.530829 | 3_1:+84735832 | Msa0382270:CDS |
| GGTTGATAAACGTGTTCAGT+TGG | 0.531073 | 3_1:+84735853 | Msa0382270:CDS |
| GATGCAAAGGGTTTGAAACC+TGG | 0.532506 | 3_1:+84736211 | Msa0382270:CDS |
| AAGCTGCTGAATATGTTACT+AGG | 0.532919 | 3_1:+84735816 | Msa0382270:CDS |
| CAATGAGTTCTAAAATCCAT+TGG | 0.537215 | 3_1:-84735911 | None:intergenic |
| TCACCTAACTCACTTCCGTT+GGG | 0.539444 | 3_1:+84736315 | Msa0382270:CDS |
| AGTGATGAGGAAGGCGGTGA+TGG | 0.540545 | 3_1:+84736553 | Msa0382270:CDS |
| TTTGATGGAAGAACACAAAA+GGG | 0.543427 | 3_1:+84735772 | Msa0382270:CDS |
| ACAGGATACCTTGGAGTACA+AGG | 0.547237 | 3_1:+84736633 | Msa0382270:CDS |
| AACTGAAACCGAACACACCC+CGG | 0.548649 | 3_1:+84736072 | Msa0382270:CDS |
| ATCACCTAACTCACTTCCGT+TGG | 0.553764 | 3_1:+84736314 | Msa0382270:CDS |
| TTATCGAATTCTAAAGAACC+AGG | 0.555066 | 3_1:-84736229 | None:intergenic |
| ACTGAAACCGAACACACCCC+GGG | 0.560385 | 3_1:+84736073 | Msa0382270:CDS |
| GTCTTGTTGGCTATAGAGGA+AGG | 0.560921 | 3_1:+84736503 | Msa0382270:CDS |
| AAATTTACAGGAAATTTCAA+AGG | 0.561249 | 3_1:-84736115 | None:intergenic |
| GCTTGAGCAACAGGATACCT+TGG | 0.563372 | 3_1:+84736624 | Msa0382270:CDS |
| TGATGTGGAGGACTTGGATG+TGG | 0.571180 | 3_1:+84736600 | Msa0382270:CDS |
| ATTCTGAGATGGATGTTAGA+GGG | 0.571949 | 3_1:+84736674 | Msa0382270:CDS |
| AACTCAACATCGTCAAGAGA+AGG | 0.575314 | 3_1:-84735971 | None:intergenic |
| TTATGCCTCAGAAGTTGATG+AGG | 0.583152 | 3_1:+84736344 | Msa0382270:CDS |
| ACTCGAGGACGATTCTGAGA+TGG | 0.584295 | 3_1:+84736663 | Msa0382270:CDS |
| AGAATAAGACGATTGTGGAA+GGG | 0.588082 | 3_1:+84736047 | Msa0382270:CDS |
| GCTTCAGAGTGATTCTGATG+TGG | 0.588652 | 3_1:+84736585 | Msa0382270:CDS |
| CGTAACGGGGTGTTATGGTG+TGG | 0.588860 | 3_1:+84735728 | Msa0382270:CDS |
| GGCGGATAGTGATAGTGATG+AGG | 0.590246 | 3_1:+84736540 | Msa0382270:CDS |
| GAGCTCTATAAGGATCGTAA+CGG | 0.593963 | 3_1:+84735713 | Msa0382270:CDS |
| TAAAGGATCCTTGTACTCCA+AGG | 0.600584 | 3_1:-84736641 | None:intergenic |
| AAGGAAGAAGAAGTTTGAGG+CGG | 0.603463 | 3_1:+84736522 | Msa0382270:CDS |
| TCAGAGTGATTCTGATGTGG+AGG | 0.607726 | 3_1:+84736588 | Msa0382270:CDS |
| AAAAGCCTCATCAACTTCTG+AGG | 0.608858 | 3_1:-84736349 | None:intergenic |
| GTTATTCGCATTGGGAACGA+TGG | 0.640658 | 3_1:+84735456 | Msa0382270:CDS |
| AGTGATAGTGATGAGGAAGG+CGG | 0.642676 | 3_1:+84736547 | Msa0382270:CDS |
| GATAGTGATAGTGATGAGGA+AGG | 0.653348 | 3_1:+84736544 | Msa0382270:CDS |
| GAGGCATAACTAACTCCCAA+CGG | 0.662694 | 3_1:-84736330 | None:intergenic |
| ATGGTAGCGAAAGCAAACCC+GGG | 0.662877 | 3_1:-84736090 | None:intergenic |
| GTACAAGGATCCTTTACTCG+AGG | 0.671532 | 3_1:+84736648 | Msa0382270:CDS |
| GCTCTATAAGGATCGTAACG+GGG | 0.700866 | 3_1:+84735715 | Msa0382270:CDS |
| AGAAAATCAGAGATTCTGTG+AGG | 0.714200 | 3_1:-84735668 | None:intergenic |
| TGGTAGCGAAAGCAAACCCG+GGG | 0.722533 | 3_1:-84736089 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTCCTGTAAATTTTAAA+AGG | + | chr3_1:84736122-84736141 | Msa0382270:CDS | 15.0% |
| !!! | ATTTCCTGTAAATTTTAAAA+GGG | + | chr3_1:84736123-84736142 | Msa0382270:CDS | 15.0% |
| !!! | AATTTCCTGTAAATTTTAAA+AGG | + | chr3_1:84736122-84736141 | Msa0382270:CDS | 15.0% |
| !!! | ATTTCCTGTAAATTTTAAAA+GGG | + | chr3_1:84736123-84736142 | Msa0382270:CDS | 15.0% |
| !! | AAATTTACAGGAAATTTCAA+AGG | - | chr3_1:84736118-84736137 | None:intergenic | 20.0% |
| !! | TGAAAAGATAAAAATGTTTC+AGG | + | chr3_1:84736162-84736181 | Msa0382270:CDS | 20.0% |
| !!! | TATTTTTTATGTTTCTGAGA+GGG | + | chr3_1:84736387-84736406 | Msa0382270:CDS | 20.0% |
| !! | AAATTTACAGGAAATTTCAA+AGG | - | chr3_1:84736118-84736137 | None:intergenic | 20.0% |
| !! | TGAAAAGATAAAAATGTTTC+AGG | + | chr3_1:84736162-84736181 | Msa0382270:CDS | 20.0% |
| !!! | TATTTTTTATGTTTCTGAGA+GGG | + | chr3_1:84736387-84736406 | Msa0382270:CDS | 20.0% |
| ! | TATAGAGCTCAAAAAGTTTA+GGG | - | chr3_1:84735703-84735722 | None:intergenic | 25.0% |
| ! | TTATAGAGCTCAAAAAGTTT+AGG | - | chr3_1:84735704-84735723 | None:intergenic | 25.0% |
| !!! | TAAACTTTTTGAGCTCTATA+AGG | + | chr3_1:84735703-84735722 | Msa0382270:CDS | 25.0% |
| !!! | AATGGATTTTAGAACTCATT+GGG | + | chr3_1:84735913-84735932 | Msa0382270:CDS | 25.0% |
| !!! | TTCTTTAGAATTCGATAAGA+GGG | + | chr3_1:84736234-84736253 | Msa0382270:CDS | 25.0% |
| !!! | GTATTTTTTATGTTTCTGAG+AGG | + | chr3_1:84736386-84736405 | Msa0382270:CDS | 25.0% |
| !!! | ATTTTTTATGTTTCTGAGAG+GGG | + | chr3_1:84736388-84736407 | Msa0382270:CDS | 25.0% |
| !! | TTTTTAACAGAAGCTTATGA+TGG | + | chr3_1:84736427-84736446 | Msa0382270:CDS | 25.0% |
| !!! | AGAAATCTCCTTTGTTTTTA+TGG | + | chr3_1:84736464-84736483 | Msa0382270:CDS | 25.0% |
| ! | TATAGAGCTCAAAAAGTTTA+GGG | - | chr3_1:84735703-84735722 | None:intergenic | 25.0% |
| ! | TTATAGAGCTCAAAAAGTTT+AGG | - | chr3_1:84735704-84735723 | None:intergenic | 25.0% |
| !!! | TAAACTTTTTGAGCTCTATA+AGG | + | chr3_1:84735703-84735722 | Msa0382270:CDS | 25.0% |
| !!! | AATGGATTTTAGAACTCATT+GGG | + | chr3_1:84735913-84735932 | Msa0382270:CDS | 25.0% |
| !!! | TTCTTTAGAATTCGATAAGA+GGG | + | chr3_1:84736234-84736253 | Msa0382270:CDS | 25.0% |
| !!! | GTATTTTTTATGTTTCTGAG+AGG | + | chr3_1:84736386-84736405 | Msa0382270:CDS | 25.0% |
| !!! | ATTTTTTATGTTTCTGAGAG+GGG | + | chr3_1:84736388-84736407 | Msa0382270:CDS | 25.0% |
| !! | TTTTTAACAGAAGCTTATGA+TGG | + | chr3_1:84736427-84736446 | Msa0382270:CDS | 25.0% |
| !!! | AGAAATCTCCTTTGTTTTTA+TGG | + | chr3_1:84736464-84736483 | Msa0382270:CDS | 25.0% |
| ! | AAAATTGCTGTTATTCGCAT+TGG | + | chr3_1:84735447-84735466 | Msa0382270:CDS | 30.0% |
| ! | AAATTGCTGTTATTCGCATT+GGG | + | chr3_1:84735448-84735467 | Msa0382270:CDS | 30.0% |
| ATAGAGCTCAAAAAGTTTAG+GGG | - | chr3_1:84735702-84735721 | None:intergenic | 30.0% | |
| ! | TTTTGATGGAAGAACACAAA+AGG | + | chr3_1:84735771-84735790 | Msa0382270:CDS | 30.0% |
| TTTGATGGAAGAACACAAAA+GGG | + | chr3_1:84735772-84735791 | Msa0382270:CDS | 30.0% | |
| !! | CAATGAGTTCTAAAATCCAT+TGG | - | chr3_1:84735914-84735933 | None:intergenic | 30.0% |
| !!! | CAATGGATTTTAGAACTCAT+TGG | + | chr3_1:84735912-84735931 | Msa0382270:CDS | 30.0% |
| ! | TTGTTTCTTGGAATTCTGAA+TGG | + | chr3_1:84736002-84736021 | Msa0382270:CDS | 30.0% |
| TGTTTCTTGGAATTCTGAAT+GGG | + | chr3_1:84736003-84736022 | Msa0382270:CDS | 30.0% | |
| ACAGGAAATTTCAAAGGAAA+TGG | - | chr3_1:84736112-84736131 | None:intergenic | 30.0% | |
| !!! | TGCACCCTTTTAAAATTTAC+AGG | - | chr3_1:84736130-84736149 | None:intergenic | 30.0% |
| ! | AAAAGGGTGCATAGTTATTA+TGG | + | chr3_1:84736139-84736158 | Msa0382270:CDS | 30.0% |
| AGATAAAAATGTTTCAGGAG+AGG | + | chr3_1:84736167-84736186 | Msa0382270:CDS | 30.0% | |
| ! | TTATCGAATTCTAAAGAACC+AGG | - | chr3_1:84736232-84736251 | None:intergenic | 30.0% |
| !! | GTTCTTTAGAATTCGATAAG+AGG | + | chr3_1:84736233-84736252 | Msa0382270:CDS | 30.0% |
| !!! | TTAGTTTTACAGTTGAGAAG+AGG | + | chr3_1:84736281-84736300 | Msa0382270:CDS | 30.0% |
| !!! | AATCTCCTTTGTTTTTATGG+AGG | + | chr3_1:84736467-84736486 | Msa0382270:CDS | 30.0% |
| !!! | ATCTCCTTTGTTTTTATGGA+GGG | + | chr3_1:84736468-84736487 | Msa0382270:CDS | 30.0% |
| ! | AAAATTGCTGTTATTCGCAT+TGG | + | chr3_1:84735447-84735466 | Msa0382270:CDS | 30.0% |
| ! | AAATTGCTGTTATTCGCATT+GGG | + | chr3_1:84735448-84735467 | Msa0382270:CDS | 30.0% |
| ATAGAGCTCAAAAAGTTTAG+GGG | - | chr3_1:84735702-84735721 | None:intergenic | 30.0% | |
| ! | TTTTGATGGAAGAACACAAA+AGG | + | chr3_1:84735771-84735790 | Msa0382270:CDS | 30.0% |
| TTTGATGGAAGAACACAAAA+GGG | + | chr3_1:84735772-84735791 | Msa0382270:CDS | 30.0% | |
| !! | CAATGAGTTCTAAAATCCAT+TGG | - | chr3_1:84735914-84735933 | None:intergenic | 30.0% |
| !!! | CAATGGATTTTAGAACTCAT+TGG | + | chr3_1:84735912-84735931 | Msa0382270:CDS | 30.0% |
| ! | TTGTTTCTTGGAATTCTGAA+TGG | + | chr3_1:84736002-84736021 | Msa0382270:CDS | 30.0% |
| TGTTTCTTGGAATTCTGAAT+GGG | + | chr3_1:84736003-84736022 | Msa0382270:CDS | 30.0% | |
| ACAGGAAATTTCAAAGGAAA+TGG | - | chr3_1:84736112-84736131 | None:intergenic | 30.0% | |
| !!! | TGCACCCTTTTAAAATTTAC+AGG | - | chr3_1:84736130-84736149 | None:intergenic | 30.0% |
| ! | AAAAGGGTGCATAGTTATTA+TGG | + | chr3_1:84736139-84736158 | Msa0382270:CDS | 30.0% |
| AGATAAAAATGTTTCAGGAG+AGG | + | chr3_1:84736167-84736186 | Msa0382270:CDS | 30.0% | |
| ! | TTATCGAATTCTAAAGAACC+AGG | - | chr3_1:84736232-84736251 | None:intergenic | 30.0% |
| !! | GTTCTTTAGAATTCGATAAG+AGG | + | chr3_1:84736233-84736252 | Msa0382270:CDS | 30.0% |
| !!! | TTAGTTTTACAGTTGAGAAG+AGG | + | chr3_1:84736281-84736300 | Msa0382270:CDS | 30.0% |
| !!! | AATCTCCTTTGTTTTTATGG+AGG | + | chr3_1:84736467-84736486 | Msa0382270:CDS | 30.0% |
| !!! | ATCTCCTTTGTTTTTATGGA+GGG | + | chr3_1:84736468-84736487 | Msa0382270:CDS | 30.0% |
| ! | GATTCATAGCAATCGATTCA+TGG | + | chr3_1:84735420-84735439 | Msa0382270:CDS | 35.0% |
| AAGATCGAAGCAAGAAGAAA+AGG | + | chr3_1:84735501-84735520 | Msa0382270:CDS | 35.0% | |
| AGATCGAAGCAAGAAGAAAA+GGG | + | chr3_1:84735502-84735521 | Msa0382270:CDS | 35.0% | |
| TAATGTGAAAGAGATCGAAC+TGG | - | chr3_1:84735623-84735642 | None:intergenic | 35.0% | |
| AGAAAATCAGAGATTCTGTG+AGG | - | chr3_1:84735671-84735690 | None:intergenic | 35.0% | |
| !! | GCAAAAAGCTGAAGTTTTGA+TGG | + | chr3_1:84735757-84735776 | Msa0382270:CDS | 35.0% |
| AAGCTGCTGAATATGTTACT+AGG | + | chr3_1:84735816-84735835 | Msa0382270:CDS | 35.0% | |
| TACTAGGTTGCTTATGATGT+CGG | + | chr3_1:84735832-84735851 | Msa0382270:CDS | 35.0% | |
| !!! | AAGAGATTTTGGTTTGCCAA+TGG | + | chr3_1:84735895-84735914 | Msa0382270:CDS | 35.0% |
| ! | TCTTGACGATGTTGAGTTTT+TGG | + | chr3_1:84735976-84735995 | Msa0382270:CDS | 35.0% |
| !!! | AGTTTTTGGAGCTTGTTTCT+TGG | + | chr3_1:84735990-84736009 | Msa0382270:CDS | 35.0% |
| GAAGAAGAATAAGACGATTG+TGG | + | chr3_1:84736042-84736061 | Msa0382270:CDS | 35.0% | |
| AAGAATAAGACGATTGTGGA+AGG | + | chr3_1:84736046-84736065 | Msa0382270:CDS | 35.0% | |
| AGAATAAGACGATTGTGGAA+GGG | + | chr3_1:84736047-84736066 | Msa0382270:CDS | 35.0% | |
| ! | TTTTACAGTTGAGAAGAGGT+TGG | + | chr3_1:84736285-84736304 | Msa0382270:CDS | 35.0% |
| ! | AGGCTTTTGCTTAAACATTG+TGG | + | chr3_1:84736364-84736383 | Msa0382270:CDS | 35.0% |
| AACAGAAGCTTATGATGGTT+CGG | + | chr3_1:84736432-84736451 | Msa0382270:CDS | 35.0% | |
| TTCTCCCTCCATAAAAACAA+AGG | - | chr3_1:84736475-84736494 | None:intergenic | 35.0% | |
| !! | ATTCTGAGATGGATGTTAGA+GGG | + | chr3_1:84736674-84736693 | Msa0382270:CDS | 35.0% |
| ! | GATTCATAGCAATCGATTCA+TGG | + | chr3_1:84735420-84735439 | Msa0382270:CDS | 35.0% |
| AAGATCGAAGCAAGAAGAAA+AGG | + | chr3_1:84735501-84735520 | Msa0382270:CDS | 35.0% | |
| AGATCGAAGCAAGAAGAAAA+GGG | + | chr3_1:84735502-84735521 | Msa0382270:CDS | 35.0% | |
| TAATGTGAAAGAGATCGAAC+TGG | - | chr3_1:84735623-84735642 | None:intergenic | 35.0% | |
| AGAAAATCAGAGATTCTGTG+AGG | - | chr3_1:84735671-84735690 | None:intergenic | 35.0% | |
| !! | GCAAAAAGCTGAAGTTTTGA+TGG | + | chr3_1:84735757-84735776 | Msa0382270:CDS | 35.0% |
| AAGCTGCTGAATATGTTACT+AGG | + | chr3_1:84735816-84735835 | Msa0382270:CDS | 35.0% | |
| TACTAGGTTGCTTATGATGT+CGG | + | chr3_1:84735832-84735851 | Msa0382270:CDS | 35.0% | |
| !!! | AAGAGATTTTGGTTTGCCAA+TGG | + | chr3_1:84735895-84735914 | Msa0382270:CDS | 35.0% |
| ! | TCTTGACGATGTTGAGTTTT+TGG | + | chr3_1:84735976-84735995 | Msa0382270:CDS | 35.0% |
| !!! | AGTTTTTGGAGCTTGTTTCT+TGG | + | chr3_1:84735990-84736009 | Msa0382270:CDS | 35.0% |
| GAAGAAGAATAAGACGATTG+TGG | + | chr3_1:84736042-84736061 | Msa0382270:CDS | 35.0% | |
| AAGAATAAGACGATTGTGGA+AGG | + | chr3_1:84736046-84736065 | Msa0382270:CDS | 35.0% | |
| AGAATAAGACGATTGTGGAA+GGG | + | chr3_1:84736047-84736066 | Msa0382270:CDS | 35.0% | |
| ! | TTTTACAGTTGAGAAGAGGT+TGG | + | chr3_1:84736285-84736304 | Msa0382270:CDS | 35.0% |
| ! | AGGCTTTTGCTTAAACATTG+TGG | + | chr3_1:84736364-84736383 | Msa0382270:CDS | 35.0% |
| AACAGAAGCTTATGATGGTT+CGG | + | chr3_1:84736432-84736451 | Msa0382270:CDS | 35.0% | |
| TTCTCCCTCCATAAAAACAA+AGG | - | chr3_1:84736475-84736494 | None:intergenic | 35.0% | |
| !! | ATTCTGAGATGGATGTTAGA+GGG | + | chr3_1:84736674-84736693 | Msa0382270:CDS | 35.0% |
| TCTCGAACAAGAACCAGAAA+TGG | + | chr3_1:84735592-84735611 | Msa0382270:CDS | 40.0% | |
| CGAACTGGAATAACCATTTC+TGG | - | chr3_1:84735608-84735627 | None:intergenic | 40.0% | |
| !!! | AGATTCTGTGAGGTTTTGGA+AGG | - | chr3_1:84735661-84735680 | None:intergenic | 40.0% |
| ! | TCAGAGATTCTGTGAGGTTT+TGG | - | chr3_1:84735665-84735684 | None:intergenic | 40.0% |
| GAGCTCTATAAGGATCGTAA+CGG | + | chr3_1:84735713-84735732 | Msa0382270:CDS | 40.0% | |
| AGCTCTATAAGGATCGTAAC+GGG | + | chr3_1:84735714-84735733 | Msa0382270:CDS | 40.0% | |
| !! | GGTTGATAAACGTGTTCAGT+TGG | + | chr3_1:84735853-84735872 | Msa0382270:CDS | 40.0% |
| ! | GCGCATTTTCGAAGAGATTT+TGG | + | chr3_1:84735884-84735903 | Msa0382270:CDS | 40.0% |
| !!! | GTATCCTCAACTTTTTCGTG+TGG | + | chr3_1:84735943-84735962 | Msa0382270:CDS | 40.0% |
| TTCACCACACGAAAAAGTTG+AGG | - | chr3_1:84735950-84735969 | None:intergenic | 40.0% | |
| AACTCAACATCGTCAAGAGA+AGG | - | chr3_1:84735974-84735993 | None:intergenic | 40.0% | |
| CTTCTTCTCAATCTCTGTGA+TGG | - | chr3_1:84736029-84736048 | None:intergenic | 40.0% | |
| GAATAAGACGATTGTGGAAG+GGG | + | chr3_1:84736048-84736067 | Msa0382270:CDS | 40.0% | |
| TCTCCTTATGCTGATGCAAA+GGG | + | chr3_1:84736199-84736218 | Msa0382270:CDS | 40.0% | |
| AAACCCTTTGCATCAGCATA+AGG | - | chr3_1:84736205-84736224 | None:intergenic | 40.0% | |
| !! | TTATGCCTCAGAAGTTGATG+AGG | + | chr3_1:84736344-84736363 | Msa0382270:CDS | 40.0% |
| AAAAGCCTCATCAACTTCTG+AGG | - | chr3_1:84736352-84736371 | None:intergenic | 40.0% | |
| !! | GAGAAGCTTCTTAGTCTTGT+TGG | + | chr3_1:84736490-84736509 | Msa0382270:CDS | 40.0% |
| !! | CTTAGTCTTGTTGGCTATAG+AGG | + | chr3_1:84736499-84736518 | Msa0382270:CDS | 40.0% |
| AGGAAGGAAGAAGAAGTTTG+AGG | + | chr3_1:84736519-84736538 | Msa0382270:CDS | 40.0% | |
| AAGGAAGAAGAAGTTTGAGG+CGG | + | chr3_1:84736522-84736541 | Msa0382270:CDS | 40.0% | |
| ! | GATAGTGATAGTGATGAGGA+AGG | + | chr3_1:84736544-84736563 | Msa0382270:CDS | 40.0% |
| TAAAGGATCCTTGTACTCCA+AGG | - | chr3_1:84736644-84736663 | None:intergenic | 40.0% | |
| !! | GATTCTGAGATGGATGTTAG+AGG | + | chr3_1:84736673-84736692 | Msa0382270:CDS | 40.0% |
| TCTCGAACAAGAACCAGAAA+TGG | + | chr3_1:84735592-84735611 | Msa0382270:CDS | 40.0% | |
| CGAACTGGAATAACCATTTC+TGG | - | chr3_1:84735608-84735627 | None:intergenic | 40.0% | |
| !!! | AGATTCTGTGAGGTTTTGGA+AGG | - | chr3_1:84735661-84735680 | None:intergenic | 40.0% |
| ! | TCAGAGATTCTGTGAGGTTT+TGG | - | chr3_1:84735665-84735684 | None:intergenic | 40.0% |
| GAGCTCTATAAGGATCGTAA+CGG | + | chr3_1:84735713-84735732 | Msa0382270:CDS | 40.0% | |
| AGCTCTATAAGGATCGTAAC+GGG | + | chr3_1:84735714-84735733 | Msa0382270:CDS | 40.0% | |
| !! | GGTTGATAAACGTGTTCAGT+TGG | + | chr3_1:84735853-84735872 | Msa0382270:CDS | 40.0% |
| ! | GCGCATTTTCGAAGAGATTT+TGG | + | chr3_1:84735884-84735903 | Msa0382270:CDS | 40.0% |
| !!! | GTATCCTCAACTTTTTCGTG+TGG | + | chr3_1:84735943-84735962 | Msa0382270:CDS | 40.0% |
| TTCACCACACGAAAAAGTTG+AGG | - | chr3_1:84735950-84735969 | None:intergenic | 40.0% | |
| AACTCAACATCGTCAAGAGA+AGG | - | chr3_1:84735974-84735993 | None:intergenic | 40.0% | |
| CTTCTTCTCAATCTCTGTGA+TGG | - | chr3_1:84736029-84736048 | None:intergenic | 40.0% | |
| GAATAAGACGATTGTGGAAG+GGG | + | chr3_1:84736048-84736067 | Msa0382270:CDS | 40.0% | |
| TCTCCTTATGCTGATGCAAA+GGG | + | chr3_1:84736199-84736218 | Msa0382270:CDS | 40.0% | |
| AAACCCTTTGCATCAGCATA+AGG | - | chr3_1:84736205-84736224 | None:intergenic | 40.0% | |
| !! | TTATGCCTCAGAAGTTGATG+AGG | + | chr3_1:84736344-84736363 | Msa0382270:CDS | 40.0% |
| AAAAGCCTCATCAACTTCTG+AGG | - | chr3_1:84736352-84736371 | None:intergenic | 40.0% | |
| !! | GAGAAGCTTCTTAGTCTTGT+TGG | + | chr3_1:84736490-84736509 | Msa0382270:CDS | 40.0% |
| !! | CTTAGTCTTGTTGGCTATAG+AGG | + | chr3_1:84736499-84736518 | Msa0382270:CDS | 40.0% |
| AGGAAGGAAGAAGAAGTTTG+AGG | + | chr3_1:84736519-84736538 | Msa0382270:CDS | 40.0% | |
| AAGGAAGAAGAAGTTTGAGG+CGG | + | chr3_1:84736522-84736541 | Msa0382270:CDS | 40.0% | |
| ! | GATAGTGATAGTGATGAGGA+AGG | + | chr3_1:84736544-84736563 | Msa0382270:CDS | 40.0% |
| TAAAGGATCCTTGTACTCCA+AGG | - | chr3_1:84736644-84736663 | None:intergenic | 40.0% | |
| !! | GATTCTGAGATGGATGTTAG+AGG | + | chr3_1:84736673-84736692 | Msa0382270:CDS | 40.0% |
| GTTATTCGCATTGGGAACGA+TGG | + | chr3_1:84735456-84735475 | Msa0382270:CDS | 45.0% | |
| TCGAAGCAGCAACAGAGAAA+TGG | + | chr3_1:84735534-84735553 | Msa0382270:CDS | 45.0% | |
| GCTCTATAAGGATCGTAACG+GGG | + | chr3_1:84735715-84735734 | Msa0382270:CDS | 45.0% | |
| ! | AATGGTAGCGAAAGCAAACC+CGG | - | chr3_1:84736094-84736113 | None:intergenic | 45.0% |
| GTCTCCTTATGCTGATGCAA+AGG | + | chr3_1:84736198-84736217 | Msa0382270:CDS | 45.0% | |
| ! | GATGCAAAGGGTTTGAAACC+TGG | + | chr3_1:84736211-84736230 | Msa0382270:CDS | 45.0% |
| ATCACCTAACTCACTTCCGT+TGG | + | chr3_1:84736314-84736333 | Msa0382270:CDS | 45.0% | |
| TCACCTAACTCACTTCCGTT+GGG | + | chr3_1:84736315-84736334 | Msa0382270:CDS | 45.0% | |
| GAGGCATAACTAACTCCCAA+CGG | - | chr3_1:84736333-84736352 | None:intergenic | 45.0% | |
| ! | ATGTTTCTGAGAGGGGTAAG+AGG | + | chr3_1:84736395-84736414 | Msa0382270:CDS | 45.0% |
| ! | GTCTTGTTGGCTATAGAGGA+AGG | + | chr3_1:84736503-84736522 | Msa0382270:CDS | 45.0% |
| ! | AGTGATAGTGATGAGGAAGG+CGG | + | chr3_1:84736547-84736566 | Msa0382270:CDS | 45.0% |
| GCTTCAGAGTGATTCTGATG+TGG | + | chr3_1:84736585-84736604 | Msa0382270:CDS | 45.0% | |
| TCAGAGTGATTCTGATGTGG+AGG | + | chr3_1:84736588-84736607 | Msa0382270:CDS | 45.0% | |
| TGATTCTGATGTGGAGGACT+TGG | + | chr3_1:84736594-84736613 | Msa0382270:CDS | 45.0% | |
| ACAGGATACCTTGGAGTACA+AGG | + | chr3_1:84736633-84736652 | Msa0382270:CDS | 45.0% | |
| GTACAAGGATCCTTTACTCG+AGG | + | chr3_1:84736648-84736667 | Msa0382270:CDS | 45.0% | |
| TCAGAATCGTCCTCGAGTAA+AGG | - | chr3_1:84736661-84736680 | None:intergenic | 45.0% | |
| GTTATTCGCATTGGGAACGA+TGG | + | chr3_1:84735456-84735475 | Msa0382270:CDS | 45.0% | |
| TCGAAGCAGCAACAGAGAAA+TGG | + | chr3_1:84735534-84735553 | Msa0382270:CDS | 45.0% | |
| GCTCTATAAGGATCGTAACG+GGG | + | chr3_1:84735715-84735734 | Msa0382270:CDS | 45.0% | |
| ! | AATGGTAGCGAAAGCAAACC+CGG | - | chr3_1:84736094-84736113 | None:intergenic | 45.0% |
| GTCTCCTTATGCTGATGCAA+AGG | + | chr3_1:84736198-84736217 | Msa0382270:CDS | 45.0% | |
| ! | GATGCAAAGGGTTTGAAACC+TGG | + | chr3_1:84736211-84736230 | Msa0382270:CDS | 45.0% |
| ATCACCTAACTCACTTCCGT+TGG | + | chr3_1:84736314-84736333 | Msa0382270:CDS | 45.0% | |
| TCACCTAACTCACTTCCGTT+GGG | + | chr3_1:84736315-84736334 | Msa0382270:CDS | 45.0% | |
| GAGGCATAACTAACTCCCAA+CGG | - | chr3_1:84736333-84736352 | None:intergenic | 45.0% | |
| ! | ATGTTTCTGAGAGGGGTAAG+AGG | + | chr3_1:84736395-84736414 | Msa0382270:CDS | 45.0% |
| ! | GTCTTGTTGGCTATAGAGGA+AGG | + | chr3_1:84736503-84736522 | Msa0382270:CDS | 45.0% |
| ! | AGTGATAGTGATGAGGAAGG+CGG | + | chr3_1:84736547-84736566 | Msa0382270:CDS | 45.0% |
| GCTTCAGAGTGATTCTGATG+TGG | + | chr3_1:84736585-84736604 | Msa0382270:CDS | 45.0% | |
| TCAGAGTGATTCTGATGTGG+AGG | + | chr3_1:84736588-84736607 | Msa0382270:CDS | 45.0% | |
| TGATTCTGATGTGGAGGACT+TGG | + | chr3_1:84736594-84736613 | Msa0382270:CDS | 45.0% | |
| ACAGGATACCTTGGAGTACA+AGG | + | chr3_1:84736633-84736652 | Msa0382270:CDS | 45.0% | |
| GTACAAGGATCCTTTACTCG+AGG | + | chr3_1:84736648-84736667 | Msa0382270:CDS | 45.0% | |
| TCAGAATCGTCCTCGAGTAA+AGG | - | chr3_1:84736661-84736680 | None:intergenic | 45.0% | |
| ! | AGGATCGTAACGGGGTGTTA+TGG | + | chr3_1:84735723-84735742 | Msa0382270:CDS | 50.0% |
| AACTGAAACCGAACACACCC+CGG | + | chr3_1:84736072-84736091 | Msa0382270:CDS | 50.0% | |
| ! | ATGGTAGCGAAAGCAAACCC+GGG | - | chr3_1:84736093-84736112 | None:intergenic | 50.0% |
| ACTCCCAACGGAAGTGAGTT+AGG | - | chr3_1:84736321-84736340 | None:intergenic | 50.0% | |
| ! | GGCGGATAGTGATAGTGATG+AGG | + | chr3_1:84736540-84736559 | Msa0382270:CDS | 50.0% |
| TGATGTGGAGGACTTGGATG+TGG | + | chr3_1:84736600-84736619 | Msa0382270:CDS | 50.0% | |
| GCTTGAGCAACAGGATACCT+TGG | + | chr3_1:84736624-84736643 | Msa0382270:CDS | 50.0% | |
| ! | ACTCGAGGACGATTCTGAGA+TGG | + | chr3_1:84736663-84736682 | Msa0382270:CDS | 50.0% |
| ! | AGGATCGTAACGGGGTGTTA+TGG | + | chr3_1:84735723-84735742 | Msa0382270:CDS | 50.0% |
| AACTGAAACCGAACACACCC+CGG | + | chr3_1:84736072-84736091 | Msa0382270:CDS | 50.0% | |
| ! | ATGGTAGCGAAAGCAAACCC+GGG | - | chr3_1:84736093-84736112 | None:intergenic | 50.0% |
| ACTCCCAACGGAAGTGAGTT+AGG | - | chr3_1:84736321-84736340 | None:intergenic | 50.0% | |
| ! | GGCGGATAGTGATAGTGATG+AGG | + | chr3_1:84736540-84736559 | Msa0382270:CDS | 50.0% |
| TGATGTGGAGGACTTGGATG+TGG | + | chr3_1:84736600-84736619 | Msa0382270:CDS | 50.0% | |
| GCTTGAGCAACAGGATACCT+TGG | + | chr3_1:84736624-84736643 | Msa0382270:CDS | 50.0% | |
| ! | ACTCGAGGACGATTCTGAGA+TGG | + | chr3_1:84736663-84736682 | Msa0382270:CDS | 50.0% |
| ! | CGTAACGGGGTGTTATGGTG+TGG | + | chr3_1:84735728-84735747 | Msa0382270:CDS | 55.0% |
| ACTGAAACCGAACACACCCC+GGG | + | chr3_1:84736073-84736092 | Msa0382270:CDS | 55.0% | |
| AAGCAAACCCGGGGTGTGTT+CGG | - | chr3_1:84736083-84736102 | None:intergenic | 55.0% | |
| ! | TGGTAGCGAAAGCAAACCCG+GGG | - | chr3_1:84736092-84736111 | None:intergenic | 55.0% |
| AGTGATGAGGAAGGCGGTGA+TGG | + | chr3_1:84736553-84736572 | Msa0382270:CDS | 55.0% | |
| GGATGTGGAGCTTGAGCAAC+AGG | + | chr3_1:84736615-84736634 | Msa0382270:CDS | 55.0% | |
| ! | CGTAACGGGGTGTTATGGTG+TGG | + | chr3_1:84735728-84735747 | Msa0382270:CDS | 55.0% |
| ACTGAAACCGAACACACCCC+GGG | + | chr3_1:84736073-84736092 | Msa0382270:CDS | 55.0% | |
| AAGCAAACCCGGGGTGTGTT+CGG | - | chr3_1:84736083-84736102 | None:intergenic | 55.0% | |
| ! | TGGTAGCGAAAGCAAACCCG+GGG | - | chr3_1:84736092-84736111 | None:intergenic | 55.0% |
| AGTGATGAGGAAGGCGGTGA+TGG | + | chr3_1:84736553-84736572 | Msa0382270:CDS | 55.0% | |
| GGATGTGGAGCTTGAGCAAC+AGG | + | chr3_1:84736615-84736634 | Msa0382270:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 84735410 | 84736705 | 84735410 | ID=Msa0382270;Name=Msa0382270 |
| chr3_1 | mRNA | 84735410 | 84736705 | 84735410 | ID=Msa0382270-mRNA-1;Parent=Msa0382270;Name=Msa0382270-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|-1|0|1|-1|1|1|0|431 |
| chr3_1 | exon | 84735410 | 84736705 | 84735410 | ID=Msa0382270-mRNA-1:exon:22089;Parent=Msa0382270-mRNA-1 |
| chr3_1 | CDS | 84735410 | 84736705 | 84735410 | ID=Msa0382270-mRNA-1:cds;Parent=Msa0382270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
