Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1219810 | XP_003609926.2 | 95.238 | 336 | 6 | 4 | 1 | 328 | 1 | 334 | 0.0 | 644 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa1219810 | -0.805880 | 1.078147e-49 | -8.615850e-47 |
| Msa0006040 | Msa1219810 | 0.806534 | 7.852774e-50 | -8.615850e-47 |
| Msa0015460 | Msa1219810 | 0.809837 | 1.553017e-50 | -8.615850e-47 |
| Msa0032610 | Msa1219810 | 0.801539 | 8.584868e-49 | -8.615850e-47 |
| Msa0033980 | Msa1219810 | 0.803009 | 4.276252e-49 | -8.615850e-47 |
| Msa0044540 | Msa1219810 | -0.811352 | 7.307622e-51 | -8.615850e-47 |
| Msa0054750 | Msa1219810 | 0.812251 | 4.656324e-51 | -8.615850e-47 |
| Msa0069260 | Msa1219810 | 0.825467 | 4.614011e-54 | -8.615850e-47 |
| Msa0069280 | Msa1219810 | 0.813034 | 3.140118e-51 | -8.615850e-47 |
| Msa0069310 | Msa1219810 | 0.841784 | 3.850793e-58 | -8.615850e-47 |
| Msa0076670 | Msa1219810 | 0.808105 | 3.646314e-50 | -8.615850e-47 |
| Msa0085360 | Msa1219810 | -0.811595 | 6.471002e-51 | -8.615850e-47 |
| Msa0091250 | Msa1219810 | -0.801040 | 1.086227e-48 | -8.615850e-47 |
| Msa0099510 | Msa1219810 | 0.816100 | 6.581406e-52 | -8.615850e-47 |
| Msa0100240 | Msa1219810 | 0.815493 | 8.986123e-52 | -8.615850e-47 |
| Msa0109590 | Msa1219810 | 0.813486 | 2.498673e-51 | -8.615850e-47 |
| Msa0613460 | Msa1219810 | 0.824341 | 8.505909e-54 | -8.615850e-47 |
| Msa0629650 | Msa1219810 | 0.838064 | 3.589879e-57 | -8.615850e-47 |
| Msa0631200 | Msa1219810 | 0.800942 | 1.137350e-48 | -8.615850e-47 |
| Msa0638280 | Msa1219810 | 0.812150 | 4.900997e-51 | -8.615850e-47 |
| Msa0638320 | Msa1219810 | 0.820535 | 6.517894e-53 | -8.615850e-47 |
| Msa0654010 | Msa1219810 | 0.844204 | 8.738988e-59 | -8.615850e-47 |
| Msa0658570 | Msa1219810 | 0.846623 | 1.933156e-59 | -8.615850e-47 |
| Msa0661190 | Msa1219810 | -0.808739 | 2.671163e-50 | -8.615850e-47 |
| Msa0661210 | Msa1219810 | 0.806031 | 1.002067e-49 | -8.615850e-47 |
| Msa0677080 | Msa1219810 | 0.806549 | 7.795323e-50 | -8.615850e-47 |
| Msa0677270 | Msa1219810 | 0.822465 | 2.335367e-53 | -8.615850e-47 |
| Msa0682090 | Msa1219810 | 0.810502 | 1.116490e-50 | -8.615850e-47 |
| Msa0682140 | Msa1219810 | 0.807324 | 5.342619e-50 | -8.615850e-47 |
| Msa0693380 | Msa1219810 | 0.801794 | 7.609597e-49 | -8.615850e-47 |
| Msa0696410 | Msa1219810 | 0.819563 | 1.087730e-52 | -8.615850e-47 |
| Msa0703490 | Msa1219810 | 0.837985 | 3.762617e-57 | -8.615850e-47 |
| Msa0706400 | Msa1219810 | 0.800036 | 1.739883e-48 | -8.615850e-47 |
| Msa0708050 | Msa1219810 | -0.808502 | 3.001056e-50 | -8.615850e-47 |
| Msa0708190 | Msa1219810 | -0.801627 | 8.236621e-49 | -8.615850e-47 |
| Msa0715410 | Msa1219810 | 0.814979 | 1.169003e-51 | -8.615850e-47 |
| Msa0743680 | Msa1219810 | 0.812759 | 3.607050e-51 | -8.615850e-47 |
| Msa0748070 | Msa1219810 | 0.806201 | 9.228043e-50 | -8.615850e-47 |
| Msa0754720 | Msa1219810 | -0.808691 | 2.734818e-50 | -8.615850e-47 |
| Msa0756630 | Msa1219810 | -0.822942 | 1.808468e-53 | -8.615850e-47 |
| Msa0770360 | Msa1219810 | 0.801604 | 8.325271e-49 | -8.615850e-47 |
| Msa0791820 | Msa1219810 | 0.843578 | 1.285483e-58 | -8.615850e-47 |
| Msa0793140 | Msa1219810 | -0.829604 | 4.690086e-55 | -8.615850e-47 |
| Msa0795890 | Msa1219810 | -0.802655 | 5.061671e-49 | -8.615850e-47 |
| Msa0797970 | Msa1219810 | 0.820388 | 7.044131e-53 | -8.615850e-47 |
| Msa0809740 | Msa1219810 | 0.809228 | 2.099357e-50 | -8.615850e-47 |
| Msa0826220 | Msa1219810 | 0.816743 | 4.725547e-52 | -8.615850e-47 |
| Msa0834440 | Msa1219810 | 0.814266 | 1.681906e-51 | -8.615850e-47 |
| Msa0837650 | Msa1219810 | 0.809066 | 2.273221e-50 | -8.615850e-47 |
| Msa0124550 | Msa1219810 | 0.811107 | 8.261332e-51 | -8.615850e-47 |
| Msa0140390 | Msa1219810 | 0.815186 | 1.051725e-51 | -8.615850e-47 |
| Msa0140510 | Msa1219810 | -0.820205 | 7.756917e-53 | -8.615850e-47 |
| Msa0148120 | Msa1219810 | 0.845782 | 3.275606e-59 | -8.615850e-47 |
| Msa0156650 | Msa1219810 | -0.834243 | 3.354913e-56 | -8.615850e-47 |
| Msa0177700 | Msa1219810 | -0.820315 | 7.321125e-53 | -8.615850e-47 |
| Msa0182570 | Msa1219810 | 0.809457 | 1.874705e-50 | -8.615850e-47 |
| Msa0185510 | Msa1219810 | 0.802774 | 4.782479e-49 | -8.615850e-47 |
| Msa0196020 | Msa1219810 | -0.806882 | 6.627336e-50 | -8.615850e-47 |
| Msa0197660 | Msa1219810 | 0.817321 | 3.504152e-52 | -8.615850e-47 |
| Msa0206790 | Msa1219810 | 0.823455 | 1.372816e-53 | -8.615850e-47 |
| Msa0208110 | Msa1219810 | 0.804281 | 2.329460e-49 | -8.615850e-47 |
| Msa0208810 | Msa1219810 | 0.805696 | 1.178439e-49 | -8.615850e-47 |
| Msa0223290 | Msa1219810 | 0.815621 | 8.418814e-52 | -8.615850e-47 |
| Msa0223380 | Msa1219810 | 0.824103 | 9.675897e-54 | -8.615850e-47 |
| Msa0226530 | Msa1219810 | 0.805138 | 1.543070e-49 | -8.615850e-47 |
| Msa0229490 | Msa1219810 | -0.805934 | 1.050251e-49 | -8.615850e-47 |
| Msa0377530 | Msa1219810 | 0.854637 | 1.077824e-61 | -8.615850e-47 |
| Msa0378380 | Msa1219810 | 0.804298 | 2.310194e-49 | -8.615850e-47 |
| Msa0380040 | Msa1219810 | 0.801156 | 1.028555e-48 | -8.615850e-47 |
| Msa0381600 | Msa1219810 | -0.800850 | 1.187884e-48 | -8.615850e-47 |
| Msa0388030 | Msa1219810 | -0.849242 | 3.667305e-60 | -8.615850e-47 |
| Msa0388040 | Msa1219810 | -0.815782 | 7.750449e-52 | -8.615850e-47 |
| Msa0389810 | Msa1219810 | 0.822051 | 2.912200e-53 | -8.615850e-47 |
| Msa0392040 | Msa1219810 | -0.805830 | 1.104754e-49 | -8.615850e-47 |
| Msa0394410 | Msa1219810 | -0.805188 | 1.505639e-49 | -8.615850e-47 |
| Msa0404000 | Msa1219810 | 0.812468 | 4.175459e-51 | -8.615850e-47 |
| Msa0404030 | Msa1219810 | 0.813936 | 1.988675e-51 | -8.615850e-47 |
| Msa0426810 | Msa1219810 | 0.825553 | 4.403436e-54 | -8.615850e-47 |
| Msa0429290 | Msa1219810 | 0.803998 | 2.667022e-49 | -8.615850e-47 |
| Msa0431670 | Msa1219810 | 0.811011 | 8.665172e-51 | -8.615850e-47 |
| Msa0437400 | Msa1219810 | 0.803041 | 4.211993e-49 | -8.615850e-47 |
| Msa0445280 | Msa1219810 | 0.822934 | 1.815956e-53 | -8.615850e-47 |
| Msa0456910 | Msa1219810 | 0.801568 | 8.467984e-49 | -8.615850e-47 |
| Msa0457510 | Msa1219810 | 0.821296 | 4.354771e-53 | -8.615850e-47 |
| Msa0464900 | Msa1219810 | 0.832908 | 7.227177e-56 | -8.615850e-47 |
| Msa0467960 | Msa1219810 | -0.803535 | 3.328589e-49 | -8.615850e-47 |
| Msa0468130 | Msa1219810 | 0.826907 | 2.095974e-54 | -8.615850e-47 |
| Msa0473240 | Msa1219810 | 0.848330 | 6.567141e-60 | -8.615850e-47 |
| Msa0474590 | Msa1219810 | 0.801548 | 8.548480e-49 | -8.615850e-47 |
| Msa0475580 | Msa1219810 | 0.804638 | 1.962269e-49 | -8.615850e-47 |
| Msa0982270 | Msa1219810 | 0.825232 | 5.242891e-54 | -8.615850e-47 |
| Msa0992490 | Msa1219810 | -0.829672 | 4.514776e-55 | -8.615850e-47 |
| Msa0994390 | Msa1219810 | 0.809414 | 1.914800e-50 | -8.615850e-47 |
| Msa1006850 | Msa1219810 | 0.835591 | 1.534645e-56 | -8.615850e-47 |
| Msa1012830 | Msa1219810 | 0.804217 | 2.401521e-49 | -8.615850e-47 |
| Msa1021510 | Msa1219810 | 0.831335 | 1.769782e-55 | -8.615850e-47 |
| Msa1037020 | Msa1219810 | 0.814836 | 1.257762e-51 | -8.615850e-47 |
| Msa1047720 | Msa1219810 | 0.823901 | 1.079001e-53 | -8.615850e-47 |
| Msa1053260 | Msa1219810 | 0.806375 | 8.482697e-50 | -8.615850e-47 |
| Msa1077670 | Msa1219810 | 0.862199 | 6.001065e-64 | -8.615850e-47 |
| Msa1079730 | Msa1219810 | -0.856762 | 2.583255e-62 | -8.615850e-47 |
| Msa1080800 | Msa1219810 | 0.834240 | 3.359796e-56 | -8.615850e-47 |
| Msa1082500 | Msa1219810 | 0.802369 | 5.795428e-49 | -8.615850e-47 |
| Msa1085300 | Msa1219810 | 0.806508 | 7.951740e-50 | -8.615850e-47 |
| Msa1089040 | Msa1219810 | 0.852967 | 3.260003e-61 | -8.615850e-47 |
| Msa1105500 | Msa1219810 | 0.836423 | 9.440293e-57 | -8.615850e-47 |
| Msa0239800 | Msa1219810 | 0.820390 | 7.036996e-53 | -8.615850e-47 |
| Msa0245310 | Msa1219810 | 0.832204 | 1.080462e-55 | -8.615850e-47 |
| Msa0249560 | Msa1219810 | 0.809379 | 1.947773e-50 | -8.615850e-47 |
| Msa0265380 | Msa1219810 | 0.872789 | 2.428484e-67 | -8.615850e-47 |
| Msa0266000 | Msa1219810 | -0.806969 | 6.352740e-50 | -8.615850e-47 |
| Msa0268090 | Msa1219810 | 0.986923 | 1.941488e-168 | -8.615850e-47 |
| Msa0288730 | Msa1219810 | 0.840478 | 8.485974e-58 | -8.615850e-47 |
| Msa0303360 | Msa1219810 | 0.887823 | 1.017167e-72 | -8.615850e-47 |
| Msa0307110 | Msa1219810 | 0.800407 | 1.462189e-48 | -8.615850e-47 |
| Msa0308200 | Msa1219810 | 0.805933 | 1.050891e-49 | -8.615850e-47 |
| Msa0317510 | Msa1219810 | 0.814484 | 1.504710e-51 | -8.615850e-47 |
| Msa0333720 | Msa1219810 | -0.832531 | 8.962896e-56 | -8.615850e-47 |
| Msa0344870 | Msa1219810 | 0.835276 | 1.844219e-56 | -8.615850e-47 |
| Msa0347610 | Msa1219810 | 0.801832 | 7.475145e-49 | -8.615850e-47 |
| Msa0350840 | Msa1219810 | 0.822746 | 2.009082e-53 | -8.615850e-47 |
| Msa1118940 | Msa1219810 | 0.844899 | 5.679495e-59 | -8.615850e-47 |
| Msa1124540 | Msa1219810 | -0.843607 | 1.262871e-58 | -8.615850e-47 |
| Msa1132860 | Msa1219810 | -0.804768 | 1.843645e-49 | -8.615850e-47 |
| Msa1135880 | Msa1219810 | 0.825623 | 4.236884e-54 | -8.615850e-47 |
| Msa1164530 | Msa1219810 | 0.823789 | 1.146153e-53 | -8.615850e-47 |
| Msa1168040 | Msa1219810 | -0.862160 | 6.168931e-64 | -8.615850e-47 |
| Msa1171730 | Msa1219810 | 0.813116 | 3.011921e-51 | -8.615850e-47 |
| Msa1174870 | Msa1219810 | 0.846641 | 1.912059e-59 | -8.615850e-47 |
| Msa1210190 | Msa1219810 | 0.800037 | 1.738861e-48 | -8.615850e-47 |
| Msa1214480 | Msa1219810 | 0.828793 | 7.376826e-55 | -8.615850e-47 |
| Msa1219810 | Msa1234690 | 0.843468 | 1.375986e-58 | -8.615850e-47 |
| Msa1219810 | Msa1234730 | 0.848237 | 6.964854e-60 | -8.615850e-47 |
| Msa1219810 | Msa1258250 | 0.804498 | 2.098802e-49 | -8.615850e-47 |
| Msa1219810 | Msa1267060 | 0.936323 | 2.086226e-97 | -8.615850e-47 |
| Msa1219810 | Msa1267190 | 0.834671 | 2.619680e-56 | -8.615850e-47 |
| Msa1219810 | Msa1300090 | 0.819679 | 1.023531e-52 | -8.615850e-47 |
| Msa1219810 | Msa1301650 | 0.808592 | 2.871989e-50 | -8.615850e-47 |
| Msa1219810 | Msa1307740 | 0.819468 | 1.142991e-52 | -8.615850e-47 |
| Msa1219810 | Msa1315110 | 0.856453 | 3.183856e-62 | -8.615850e-47 |
| Msa1219810 | Msa1335710 | 0.812706 | 3.704065e-51 | -8.615850e-47 |
| Msa1219810 | Msa1340260 | 0.817105 | 3.918701e-52 | -8.615850e-47 |
| Msa1219810 | Msa1340270 | 0.811774 | 5.917890e-51 | -8.615850e-47 |
| Msa1219810 | Msa1359630 | 0.814115 | 1.815287e-51 | -8.615850e-47 |
| Msa1219810 | Msa1359650 | -0.811265 | 7.631955e-51 | -8.615850e-47 |
| Msa1219810 | Msa1370620 | 0.836996 | 6.743527e-57 | -8.615850e-47 |
| Msa1219810 | Msa1376890 | 0.857038 | 2.142830e-62 | -8.615850e-47 |
| Msa1219810 | Msa1397260 | 0.811548 | 6.625667e-51 | -8.615850e-47 |
| Msa1219810 | Msa1401140 | 0.804920 | 1.713272e-49 | -8.615850e-47 |
| Msa1219810 | Msa1401530 | 0.932681 | 5.911525e-95 | -8.615850e-47 |
| Msa1219810 | Msa1403340 | 0.803069 | 4.156790e-49 | -8.615850e-47 |
| Msa1219810 | Msa1417810 | -0.821738 | 3.442366e-53 | -8.615850e-47 |
| Msa1219810 | Msa1435400 | 0.831978 | 1.228222e-55 | -8.615850e-47 |
| Msa1219810 | Msa1438700 | 0.822828 | 1.922130e-53 | -8.615850e-47 |
| Msa1219810 | Msa1440940 | 0.806971 | 6.348844e-50 | -8.615850e-47 |
| Msa1219810 | Msa1444250 | -0.806489 | 8.022740e-50 | -8.615850e-47 |
| Msa1219810 | Msa1445400 | -0.822788 | 1.963826e-53 | -8.615850e-47 |
| Msa1219810 | Msa1447110 | 0.811757 | 5.966654e-51 | -8.615850e-47 |
| Msa1219810 | Msa1449350 | -0.817888 | 2.611002e-52 | -8.615850e-47 |
| Msa1219810 | Msa1452170 | 0.810667 | 1.028496e-50 | -8.615850e-47 |
| Msa1219810 | Msa1459760 | -0.831854 | 1.318453e-55 | -8.615850e-47 |
| Msa0489610 | Msa1219810 | 0.804269 | 2.342523e-49 | -8.615850e-47 |
| Msa0492710 | Msa1219810 | 0.810330 | 1.215906e-50 | -8.615850e-47 |
| Msa0504240 | Msa1219810 | 0.814369 | 1.595374e-51 | -8.615850e-47 |
| Msa0504410 | Msa1219810 | 0.821390 | 4.141628e-53 | -8.615850e-47 |
| Msa0512870 | Msa1219810 | 0.802768 | 4.796860e-49 | -8.615850e-47 |
| Msa0517490 | Msa1219810 | 0.864652 | 1.042229e-64 | -8.615850e-47 |
| Msa0519190 | Msa1219810 | 0.824258 | 8.897001e-54 | -8.615850e-47 |
| Msa0519220 | Msa1219810 | 0.808649 | 2.791312e-50 | -8.615850e-47 |
| Msa0531990 | Msa1219810 | -0.817888 | 2.611002e-52 | -8.615850e-47 |
| Msa0532100 | Msa1219810 | -0.814581 | 1.432025e-51 | -8.615850e-47 |
| Msa0532540 | Msa1219810 | 0.845471 | 3.978581e-59 | -8.615850e-47 |
| Msa0534730 | Msa1219810 | 0.806264 | 8.949514e-50 | -8.615850e-47 |
| Msa0547400 | Msa1219810 | 0.802085 | 6.631140e-49 | -8.615850e-47 |
| Msa0558690 | Msa1219810 | 0.834388 | 3.085753e-56 | -8.615850e-47 |
| Msa0567020 | Msa1219810 | 0.856530 | 3.022648e-62 | -8.615850e-47 |
| Msa0578260 | Msa1219810 | 0.815653 | 8.278596e-52 | -8.615850e-47 |
| Msa0589390 | Msa1219810 | 0.849495 | 3.117631e-60 | -8.615850e-47 |
| Msa0600410 | Msa1219810 | -0.801243 | 9.872965e-49 | -8.615850e-47 |
| Msa0864470 | Msa1219810 | -0.833045 | 6.682273e-56 | -8.615850e-47 |
| Msa0865890 | Msa1219810 | 0.827201 | 1.782771e-54 | -8.615850e-47 |
| Msa0901320 | Msa1219810 | 0.812472 | 4.167817e-51 | -8.615850e-47 |
| Msa0909000 | Msa1219810 | -0.813487 | 2.496839e-51 | -8.615850e-47 |
| Msa0913480 | Msa1219810 | -0.813962 | 1.962646e-51 | -8.615850e-47 |
| Msa0922030 | Msa1219810 | 0.818198 | 2.220939e-52 | -8.615850e-47 |
| Msa0942550 | Msa1219810 | -0.838358 | 3.016467e-57 | -8.615850e-47 |
| Msa0942560 | Msa1219810 | -0.825049 | 5.793853e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1219810 | MtrunA17_Chr4g0069811 | 95.238 | 336 | 6 | 4 | 1 | 328 | 1 | 334 | 0.0 | 644 |
| Msa1219810 | MtrunA17_Chr2g0302031 | 66.450 | 307 | 76 | 7 | 34 | 324 | 8 | 303 | 5.93e-136 | 388 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1219810 | AT4G33140.1 | 65.354 | 254 | 81 | 2 | 76 | 325 | 102 | 352 | 2.18e-119 | 348 |
Find 87 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCCAAACCAATTATTTC+TGG | 0.133969 | 8_1:-82712775 | Msa1219810:five_prime_UTR |
| TTCAATAGTGTTGCTCAAAA+TGG | 0.149132 | 8_1:+82709211 | None:intergenic |
| TCATGTGTACGAGTTCTTTA+AGG | 0.194014 | 8_1:-82711191 | Msa1219810:intron |
| CACCTACAAATCTCTGATTT+TGG | 0.208922 | 8_1:+82709795 | None:intergenic |
| AATGATATTGGTGGGTTAAA+TGG | 0.242698 | 8_1:-82712346 | Msa1219810:CDS |
| AGTCGGTTCGGTTGTGTTAT+TGG | 0.262651 | 8_1:-82712868 | Msa1219810:five_prime_UTR |
| GAATCAATTCCAGAAATAAT+TGG | 0.277717 | 8_1:+82712766 | None:intergenic |
| AAAATGGAATCTTGCAATAA+TGG | 0.283200 | 8_1:+82712926 | None:intergenic |
| CTCATCAACCAACTCATTCT+TGG | 0.309879 | 8_1:+82709461 | None:intergenic |
| ATGTATGTGATTGGGCAAAA+TGG | 0.324940 | 8_1:+82712910 | None:intergenic |
| AATTCCAGAAATAATTGGTT+TGG | 0.329348 | 8_1:+82712771 | None:intergenic |
| GTTAAGGTTGATAATGATAT+TGG | 0.344303 | 8_1:-82712358 | Msa1219810:CDS |
| GTCTCGGCAGAATGTAATTA+AGG | 0.345693 | 8_1:-82709910 | Msa1219810:CDS |
| TGAATCGCCGTCTGAGCACC+TGG | 0.365340 | 8_1:+82710055 | None:intergenic |
| AACCCTATGGCTTATTCAAT+AGG | 0.387771 | 8_1:-82712574 | Msa1219810:CDS |
| GTTAATAGAAGATTTGAGTT+TGG | 0.389742 | 8_1:-82712490 | Msa1219810:CDS |
| AAGACACCGTATTTCAAGTC+AGG | 0.400340 | 8_1:-82710091 | Msa1219810:CDS |
| TTCTATGGTTTGAGTCGGTT+CGG | 0.402265 | 8_1:-82712880 | Msa1219810:five_prime_UTR |
| AAATGGAATCTTGCAATAAT+GGG | 0.404843 | 8_1:+82712927 | None:intergenic |
| GACCAAAATCAGAGATTTGT+AGG | 0.415035 | 8_1:-82709797 | Msa1219810:intron |
| ATATCCCATCAAGTGCAAAA+TGG | 0.416702 | 8_1:+82709823 | None:intergenic |
| TTCTGTCCAGTTCTTAACTT+TGG | 0.420976 | 8_1:+82709425 | None:intergenic |
| TCAAATTGAAGTGAATTTGT+CGG | 0.422319 | 8_1:+82713025 | None:intergenic |
| TGAGCAACACTATTGAAGAT+TGG | 0.427191 | 8_1:-82709205 | Msa1219810:three_prime_UTR |
| GGAGCAAGGGAATTCTGTTA+AGG | 0.434829 | 8_1:-82712374 | Msa1219810:CDS |
| TTTGTATGTAGAATTTAGAA+TGG | 0.435687 | 8_1:+82712992 | None:intergenic |
| TTTATGATCAACATGAATGT+AGG | 0.437731 | 8_1:-82709119 | Msa1219810:three_prime_UTR |
| TCAATAGTGTTGCTCAAAAT+GGG | 0.438019 | 8_1:+82709212 | None:intergenic |
| TGGTGACCAAAGTTAAGAAC+TGG | 0.453694 | 8_1:-82709431 | Msa1219810:CDS |
| ATTATGAAAACTCATATCCT+TGG | 0.454107 | 8_1:-82709485 | Msa1219810:CDS |
| TGAATCTCATGGAAAAGTCC+TGG | 0.458226 | 8_1:+82709855 | None:intergenic |
| TGTTGCTGTTGATGTGGATG+AGG | 0.476033 | 8_1:-82712272 | Msa1219810:CDS |
| TTGGAACAAGCTGTTCACTA+TGG | 0.484117 | 8_1:-82709186 | Msa1219810:three_prime_UTR |
| GCAATAGAGTGTGCTGAAGT+TGG | 0.485346 | 8_1:-82709528 | Msa1219810:CDS |
| TTCATTTCTATGGTTTGAGT+CGG | 0.494053 | 8_1:-82712885 | Msa1219810:five_prime_UTR |
| GCCGTCTGAGCACCTGGGAG+AGG | 0.498666 | 8_1:+82710061 | None:intergenic |
| TTCTTAACTTTGGTCACCAA+AGG | 0.502489 | 8_1:+82709435 | None:intergenic |
| TTTGCATAATAACAACCCTA+TGG | 0.504044 | 8_1:-82712587 | Msa1219810:CDS |
| TAACCTATTGAATAAGCCAT+AGG | 0.507567 | 8_1:+82712571 | None:intergenic |
| TTAAGGATCACACTATTGAA+TGG | 0.508954 | 8_1:-82709893 | Msa1219810:CDS |
| GTTGGTTGATGAGCACCCTT+TGG | 0.511476 | 8_1:-82709451 | Msa1219810:CDS |
| GTTGCTGTTGATGTGGATGA+GGG | 0.514964 | 8_1:-82712271 | Msa1219810:intron |
| CCCTCTCCCAGGTGCTCAGA+CGG | 0.520221 | 8_1:-82710062 | Msa1219810:CDS |
| CCGTCTGAGCACCTGGGAGA+GGG | 0.523562 | 8_1:+82710062 | None:intergenic |
| TTTGCATCTGATTTGGAGCA+AGG | 0.525020 | 8_1:-82712388 | Msa1219810:CDS |
| TCCAGCATTTGATGTAGAGA+AGG | 0.527196 | 8_1:+82709344 | None:intergenic |
| TCCTTGTTCTCATTTGAGCA+AGG | 0.527633 | 8_1:-82712539 | Msa1219810:CDS |
| TAACAGGACTTTAAATGCCA+AGG | 0.528929 | 8_1:-82709577 | Msa1219810:intron |
| GCTTGTTGTTGCTGTTGATG+TGG | 0.530835 | 8_1:-82712278 | Msa1219810:CDS |
| CCCTTCTCTACATCAAATGC+TGG | 0.534468 | 8_1:-82709345 | Msa1219810:three_prime_UTR |
| AACCTATTGAATAAGCCATA+GGG | 0.538609 | 8_1:+82712572 | None:intergenic |
| ACCAAAATCATACGTTACAA+TGG | 0.539123 | 8_1:+82710006 | None:intergenic |
| GGAATCTTGCAATAATGGGT+TGG | 0.539485 | 8_1:+82712931 | None:intergenic |
| TCTTAACTTTGGTCACCAAA+GGG | 0.540216 | 8_1:+82709436 | None:intergenic |
| TGATTGTGTCATATTCCTCT+AGG | 0.545688 | 8_1:+82709245 | None:intergenic |
| ATTATCATCAATAAGAACCT+TGG | 0.545700 | 8_1:+82709560 | None:intergenic |
| TGAATCCCTGACTTGAAATA+CGG | 0.546358 | 8_1:+82710085 | None:intergenic |
| TTTATCATATGCTGAATGAA+TGG | 0.548935 | 8_1:-82713116 | Msa1219810:five_prime_UTR |
| GGTTACCAAAGTGAATCTCA+TGG | 0.554939 | 8_1:+82709844 | None:intergenic |
| TGGAACTGTTCACGTGATGA+AGG | 0.557011 | 8_1:-82710500 | Msa1219810:intron |
| TTGCATCTGATTTGGAGCAA+GGG | 0.562036 | 8_1:-82712387 | Msa1219810:CDS |
| AGACACCGTATTTCAAGTCA+GGG | 0.563775 | 8_1:-82710090 | Msa1219810:CDS |
| TCAGGGATTCACCCTCTCCC+AGG | 0.563877 | 8_1:-82710073 | Msa1219810:CDS |
| ACCAACTCATTCTTGGACCA+AGG | 0.564088 | 8_1:+82709468 | None:intergenic |
| GAATCTCATGGAAAAGTCCT+GGG | 0.569077 | 8_1:+82709856 | None:intergenic |
| CCAGCATTTGATGTAGAGAA+GGG | 0.575343 | 8_1:+82709345 | None:intergenic |
| AGGTTGATAATGATATTGGT+GGG | 0.577068 | 8_1:-82712354 | Msa1219810:CDS |
| AAGGTTGATAATGATATTGG+TGG | 0.579097 | 8_1:-82712355 | Msa1219810:CDS |
| AGTTAAGAACTGGACAGAAG+TGG | 0.584067 | 8_1:-82709421 | Msa1219810:CDS |
| TGGATAGAGAAGAATTTCCC+AGG | 0.586791 | 8_1:-82709873 | Msa1219810:CDS |
| AATCATACGTTACAATGGAT+AGG | 0.596490 | 8_1:+82710011 | None:intergenic |
| TGAAGACGAAAGGAGGAAAG+TGG | 0.611584 | 8_1:+82713211 | None:intergenic |
| GAACAAGCTGTTCACTATGG+TGG | 0.620858 | 8_1:-82709183 | Msa1219810:three_prime_UTR |
| CTAGTGCTAGTAATAGCAGT+AGG | 0.623766 | 8_1:-82712444 | Msa1219810:CDS |
| ACCTTGCTCAAATGAGAACA+AGG | 0.632511 | 8_1:+82712538 | None:intergenic |
| TCCTTGGTCCAAGAATGAGT+TGG | 0.633229 | 8_1:-82709469 | Msa1219810:CDS |
| GATCAACATGAATGTAGGAG+TGG | 0.636662 | 8_1:-82709114 | Msa1219810:three_prime_UTR |
| AGACTGCAAATCATCAAAAG+CGG | 0.643036 | 8_1:+82712804 | None:intergenic |
| GAATCGCCGTCTGAGCACCT+GGG | 0.644858 | 8_1:+82710056 | None:intergenic |
| AGAATAGTGAAAATCTAGCA+CGG | 0.647149 | 8_1:-82712627 | Msa1219810:CDS |
| TTCTTATTGATGATAATCCG+CGG | 0.647289 | 8_1:-82709554 | Msa1219810:CDS |
| AAACGTTGATCCCGAAAACG+AGG | 0.653630 | 8_1:+82712310 | None:intergenic |
| AGTATTAGGAAATTTCGTGT+CGG | 0.674898 | 8_1:-82711269 | Msa1219810:CDS |
| AGAGCTAATGCAAGGCCTCG+CGG | 0.678484 | 8_1:-82712412 | Msa1219810:CDS |
| GCACACTCTATTGCATACCG+CGG | 0.678841 | 8_1:+82709537 | None:intergenic |
| GCAAGAAGATAACTACCTAG+AGG | 0.691368 | 8_1:-82709260 | Msa1219810:three_prime_UTR |
| AAATCAGATGCAAAACCGCG+AGG | 0.732365 | 8_1:+82712397 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTTTTTAAAATAGAATAA+AGG | - | chr8_1:82710502-82710521 | Msa1219810:CDS | 10.0% |
| !!! | GATAATTTTGAAATGAAAAA+AGG | + | chr8_1:82709462-82709481 | None:intergenic | 15.0% |
| !!! | TATTTTATAATAGCTTATCA+TGG | - | chr8_1:82710030-82710049 | Msa1219810:CDS | 15.0% |
| !!! | TTTCACTAATTTTATTCTTT+CGG | - | chr8_1:82711990-82712009 | Msa1219810:intron | 15.0% |
| !! | AACATATAATAAATGTGATT+CGG | + | chr8_1:82712238-82712257 | None:intergenic | 15.0% |
| !! | TTTGTATGTAGAATTTAGAA+TGG | + | chr8_1:82709182-82709201 | None:intergenic | 20.0% |
| !! | AATGAAAAATGTATGTGATT+GGG | + | chr8_1:82709272-82709291 | None:intergenic | 20.0% |
| !! | AAATGAAAAATGTATGTGAT+TGG | + | chr8_1:82709273-82709292 | None:intergenic | 20.0% |
| !!! | ACATACATTTTTCATTTCTA+TGG | - | chr8_1:82709276-82709295 | Msa1219810:three_prime_UTR | 20.0% |
| !!! | AAATCTGATTTTGAGAAAAA+GGG | + | chr8_1:82709335-82709354 | None:intergenic | 20.0% |
| !!! | TATGCTAATGTTTTTGATTT+TGG | - | chr8_1:82709657-82709676 | Msa1219810:intron | 20.0% |
| !!! | ATGCTAATGTTTTTGATTTT+GGG | - | chr8_1:82709658-82709677 | Msa1219810:intron | 20.0% |
| !! | GGAATCAATCTTTATATTAA+TGG | - | chr8_1:82710100-82710119 | Msa1219810:CDS | 20.0% |
| !! | ATCAATCTTTATATTAATGG+AGG | - | chr8_1:82710103-82710122 | Msa1219810:CDS | 20.0% |
| !!! | AAGAAAAAATAACTGATTCA+AGG | + | chr8_1:82710788-82710807 | None:intergenic | 20.0% |
| !!! | TCAATTTTTTAAGCAGTATT+AGG | - | chr8_1:82710888-82710907 | Msa1219810:intron | 20.0% |
| !! | CAATATTAAACAAATGTCAT+CGG | - | chr8_1:82711062-82711081 | Msa1219810:intron | 20.0% |
| !! | TCTATATTAATACATAAGAC+TGG | + | chr8_1:82711137-82711156 | None:intergenic | 20.0% |
| !! | ATATCTGTAACAGAAATTAA+GGG | + | chr8_1:82711652-82711671 | None:intergenic | 20.0% |
| !! | GAAAAATTCATTAGAGAATT+GGG | + | chr8_1:82711907-82711926 | None:intergenic | 20.0% |
| !!! | TTTTATCAAGATTTTTGTGT+AGG | - | chr8_1:82711963-82711982 | Msa1219810:intron | 20.0% |
| !! | ATCACATTTATTATATGTTC+AGG | - | chr8_1:82712239-82712258 | Msa1219810:intron | 20.0% |
| !! | GATAAAAAATAGTACTTGAA+CGG | + | chr8_1:82712544-82712563 | None:intergenic | 20.0% |
| !!! | AGTTTTCATAATCAAAAAGT+AGG | + | chr8_1:82712678-82712697 | None:intergenic | 20.0% |
| !!! | GTGATTTTATTACTATAACT+AGG | - | chr8_1:82713019-82713038 | Msa1219810:five_prime_UTR | 20.0% |
| !!! | ATATTTTTGATGAAGACGAA+AGG | + | chr8_1:82708973-82708992 | None:intergenic | 25.0% |
| ! | TTTATCATATGCTGAATGAA+TGG | - | chr8_1:82709055-82709074 | Msa1219810:three_prime_UTR | 25.0% |
| ! | TCAAATTGAAGTGAATTTGT+CGG | + | chr8_1:82709149-82709168 | None:intergenic | 25.0% |
| ! | AAATGGAATCTTGCAATAAT+GGG | + | chr8_1:82709247-82709266 | None:intergenic | 25.0% |
| ! | AAAATGGAATCTTGCAATAA+TGG | + | chr8_1:82709248-82709267 | None:intergenic | 25.0% |
| !!! | AATCTGATTTTGAGAAAAAG+GGG | + | chr8_1:82709334-82709353 | None:intergenic | 25.0% |
| !!! | CAAATCTGATTTTGAGAAAA+AGG | + | chr8_1:82709336-82709355 | None:intergenic | 25.0% |
| ! | AATTCCAGAAATAATTGGTT+TGG | + | chr8_1:82709403-82709422 | None:intergenic | 25.0% |
| ! | GAATCAATTCCAGAAATAAT+TGG | + | chr8_1:82709408-82709427 | None:intergenic | 25.0% |
| !!! | TGCTAATGTTTTTGATTTTG+GGG | - | chr8_1:82709659-82709678 | Msa1219810:intron | 25.0% |
| !! | GTTAATAGAAGATTTGAGTT+TGG | - | chr8_1:82709681-82709700 | Msa1219810:intron | 25.0% |
| !!! | GTTAAGGTTGATAATGATAT+TGG | - | chr8_1:82709813-82709832 | Msa1219810:CDS | 25.0% |
| !!! | TGTGTGTTTTTTAATATGCA+AGG | - | chr8_1:82710164-82710183 | Msa1219810:intron | 25.0% |
| ! | AGAACTTCACATTTAACAAA+AGG | + | chr8_1:82710411-82710430 | None:intergenic | 25.0% |
| !!! | TTCTTTAAGGTATCTTTTGT+TGG | - | chr8_1:82710993-82711012 | Msa1219810:intron | 25.0% |
| ! | CGATGACATTTGTTTAATAT+TGG | + | chr8_1:82711064-82711083 | None:intergenic | 25.0% |
| ! | ATAAGCCTAATTTGAATAGA+GGG | + | chr8_1:82711181-82711200 | None:intergenic | 25.0% |
| ! | AATAAGCCTAATTTGAATAG+AGG | + | chr8_1:82711182-82711201 | None:intergenic | 25.0% |
| !! | TTAATTTTCTTTCGTGATAG+AGG | - | chr8_1:82711211-82711230 | Msa1219810:CDS | 25.0% |
| ! | TATTAGAGAAACCATTAGAA+AGG | - | chr8_1:82711255-82711274 | Msa1219810:CDS | 25.0% |
| ! | GAAAGATTTAGACAGAATTT+GGG | + | chr8_1:82711471-82711490 | None:intergenic | 25.0% |
| !!! | AGAACTACTTTTTCTATGAA+TGG | - | chr8_1:82711503-82711522 | Msa1219810:intron | 25.0% |
| !!! | GAACTACTTTTTCTATGAAT+GGG | - | chr8_1:82711504-82711523 | Msa1219810:intron | 25.0% |
| ! | CAAATTTACAACAAAAGCAA+TGG | + | chr8_1:82711599-82711618 | None:intergenic | 25.0% |
| ! | CATATCTGTAACAGAAATTA+AGG | + | chr8_1:82711653-82711672 | None:intergenic | 25.0% |
| ! | CTTAATTTCTGTTACAGATA+TGG | - | chr8_1:82711651-82711670 | Msa1219810:intron | 25.0% |
| !!! | ATAGCAAAATTGTTCTAAAG+AGG | + | chr8_1:82711708-82711727 | None:intergenic | 25.0% |
| ! | CCTTTGAACATAGATTTATA+GGG | + | chr8_1:82711846-82711865 | None:intergenic | 25.0% |
| ! | CCTATAAATCTATGTTCAAA+GGG | - | chr8_1:82711844-82711863 | Msa1219810:intron | 25.0% |
| ! | GGAAAAATTCATTAGAGAAT+TGG | + | chr8_1:82711908-82711927 | None:intergenic | 25.0% |
| ! | TTTCCTAATTCTTGTTCAAA+AGG | - | chr8_1:82711923-82711942 | Msa1219810:intron | 25.0% |
| ! | TTCCTAATTCTTGTTCAAAA+GGG | - | chr8_1:82711924-82711943 | Msa1219810:intron | 25.0% |
| ! | TTTATTATATGTTCAGGTCT+CGG | - | chr8_1:82712245-82712264 | Msa1219810:intron | 25.0% |
| !! | TGATATGACTTGATTTTCTT+TGG | - | chr8_1:82712430-82712449 | Msa1219810:CDS | 25.0% |
| ! | ATTATCATCAATAAGAACCT+TGG | + | chr8_1:82712614-82712633 | None:intergenic | 25.0% |
| ! | ATTATGAAAACTCATATCCT+TGG | - | chr8_1:82712686-82712705 | Msa1219810:five_prime_UTR | 25.0% |
| ! | TTTATGATCAACATGAATGT+AGG | - | chr8_1:82713052-82713071 | Msa1219810:five_prime_UTR | 25.0% |
| !!! | TCTCGTCTTTTTTCATTCTT+TGG | - | chr8_1:82709215-82709234 | Msa1219810:three_prime_UTR | 30.0% |
| TTCATTTCTATGGTTTGAGT+CGG | - | chr8_1:82709286-82709305 | Msa1219810:three_prime_UTR | 30.0% | |
| !! | ATCTGATTTTGAGAAAAAGG+GGG | + | chr8_1:82709333-82709352 | None:intergenic | 30.0% |
| ! | ATCATCAAAAGCGGTTTTTA+GGG | + | chr8_1:82709361-82709380 | None:intergenic | 30.0% |
| ! | AATCATCAAAAGCGGTTTTT+AGG | + | chr8_1:82709362-82709381 | None:intergenic | 30.0% |
| CAATCCAAACCAATTATTTC+TGG | - | chr8_1:82709396-82709415 | Msa1219810:CDS | 30.0% | |
| AGAATAGTGAAAATCTAGCA+CGG | - | chr8_1:82709544-82709563 | Msa1219810:CDS | 30.0% | |
| TTTGCATAATAACAACCCTA+TGG | - | chr8_1:82709584-82709603 | Msa1219810:intron | 30.0% | |
| AACCTATTGAATAAGCCATA+GGG | + | chr8_1:82709602-82709621 | None:intergenic | 30.0% | |
| TAACCTATTGAATAAGCCAT+AGG | + | chr8_1:82709603-82709622 | None:intergenic | 30.0% | |
| ! | TTTTTGTAAGAGCTAATGCA+AGG | - | chr8_1:82709751-82709770 | Msa1219810:intron | 30.0% |
| !! | AAGGTTGATAATGATATTGG+TGG | - | chr8_1:82709816-82709835 | Msa1219810:CDS | 30.0% |
| !! | AGGTTGATAATGATATTGGT+GGG | - | chr8_1:82709817-82709836 | Msa1219810:CDS | 30.0% |
| !! | AATGATATTGGTGGGTTAAA+TGG | - | chr8_1:82709825-82709844 | Msa1219810:CDS | 30.0% |
| TAATATTGTTGCTCTCTGAT+AGG | - | chr8_1:82710076-82710095 | Msa1219810:CDS | 30.0% | |
| TGAACATATGCATGAAGATT+TGG | + | chr8_1:82710299-82710318 | None:intergenic | 30.0% | |
| TACACATTACCAAGAATTTC+TGG | + | chr8_1:82710441-82710460 | None:intergenic | 30.0% | |
| AGTATTAGGAAATTTCGTGT+CGG | - | chr8_1:82710902-82710921 | Msa1219810:intron | 30.0% | |
| ATACATAAGACTGGAGAATA+GGG | + | chr8_1:82711128-82711147 | None:intergenic | 30.0% | |
| AATACATAAGACTGGAGAAT+AGG | + | chr8_1:82711129-82711148 | None:intergenic | 30.0% | |
| ! | GTTTCTCTAATAGTTTTCCT+AGG | + | chr8_1:82711247-82711266 | None:intergenic | 30.0% |
| AACCATTAGAAAGGATTTAG+AGG | - | chr8_1:82711264-82711283 | Msa1219810:CDS | 30.0% | |
| GTTCTGTCATAAACCAAATT+TGG | + | chr8_1:82711304-82711323 | None:intergenic | 30.0% | |
| !!! | CTTGTTTGTTGTTGTTTTGT+TGG | - | chr8_1:82711374-82711393 | Msa1219810:intron | 30.0% |
| GGAAAGATTTAGACAGAATT+TGG | + | chr8_1:82711472-82711491 | None:intergenic | 30.0% | |
| ATCATAATTCAGTTCCTTGT+TGG | - | chr8_1:82711538-82711557 | Msa1219810:intron | 30.0% | |
| TTTGTGCATATGCTTGAATT+TGG | - | chr8_1:82711615-82711634 | Msa1219810:intron | 30.0% | |
| ! | CAACAATTTTCTGTACACAA+TGG | + | chr8_1:82711732-82711751 | None:intergenic | 30.0% |
| CATTGTGTACAGAAAATTGT+TGG | - | chr8_1:82711730-82711749 | Msa1219810:intron | 30.0% | |
| GAACTTGAACAAATCAAACA+AGG | + | chr8_1:82711769-82711788 | None:intergenic | 30.0% | |
| CCCTATAAATCTATGTTCAA+AGG | - | chr8_1:82711843-82711862 | Msa1219810:intron | 30.0% | |
| CCCTTTGAACATAGATTTAT+AGG | + | chr8_1:82711847-82711866 | None:intergenic | 30.0% | |
| !!! | AAGTTTTGTTTTCACGATTG+AGG | - | chr8_1:82711877-82711896 | Msa1219810:intron | 30.0% |
| TTATTCTTTCGGATGACTAA+TGG | - | chr8_1:82712001-82712020 | Msa1219810:intron | 30.0% | |
| AATCATACGTTACAATGGAT+AGG | + | chr8_1:82712163-82712182 | None:intergenic | 30.0% | |
| ! | TCCATTGTAACGTATGATTT+TGG | - | chr8_1:82712164-82712183 | Msa1219810:intron | 30.0% |
| ACCAAAATCATACGTTACAA+TGG | + | chr8_1:82712168-82712187 | None:intergenic | 30.0% | |
| !! | GTAACGTATGATTTTGGTAT+TGG | - | chr8_1:82712170-82712189 | Msa1219810:intron | 30.0% |
| TTAAGGATCACACTATTGAA+TGG | - | chr8_1:82712278-82712297 | Msa1219810:CDS | 30.0% | |
| ATAGAGAAAAACAGATGAAG+AGG | + | chr8_1:82712411-82712430 | None:intergenic | 30.0% | |
| TGATGTGAATCTAAACAGTA+GGG | + | chr8_1:82712482-82712501 | None:intergenic | 30.0% | |
| ! | TTCTTATTGATGATAATCCG+CGG | - | chr8_1:82712617-82712636 | Msa1219810:CDS | 30.0% |
| ! | TCAATAGTGTTGCTCAAAAT+GGG | + | chr8_1:82712962-82712981 | None:intergenic | 30.0% |
| ! | TTCAATAGTGTTGCTCAAAA+TGG | + | chr8_1:82712963-82712982 | None:intergenic | 30.0% |
| ! | AGAAGAGAACATAGATTTTG+TGG | + | chr8_1:82713120-82713139 | None:intergenic | 30.0% |
| !! | TTTTGATGCTGTTTGTGTTT+TGG | - | chr8_1:82713151-82713170 | Msa1219810:five_prime_UTR | 30.0% |
| ! | TTTTTGATGAAGACGAAAGG+AGG | + | chr8_1:82708970-82708989 | None:intergenic | 35.0% |
| ATGTATGTGATTGGGCAAAA+TGG | + | chr8_1:82709264-82709283 | None:intergenic | 35.0% | |
| !! | TCATCAAAAGCGGTTTTTAG+GGG | + | chr8_1:82709360-82709379 | None:intergenic | 35.0% |
| AGACTGCAAATCATCAAAAG+CGG | + | chr8_1:82709370-82709389 | None:intergenic | 35.0% | |
| AACCCTATGGCTTATTCAAT+AGG | - | chr8_1:82709597-82709616 | Msa1219810:intron | 35.0% | |
| GAGTTTGGTAGAAAAACTTG+TGG | - | chr8_1:82709696-82709715 | Msa1219810:intron | 35.0% | |
| TGAATAATGAAGACCTTGTG+TGG | - | chr8_1:82709978-82709997 | Msa1219810:intron | 35.0% | |
| ATATTTGCCGAAATCTTAGC+TGG | - | chr8_1:82710322-82710341 | Msa1219810:intron | 35.0% | |
| ACATTGACCAGCTAAGATTT+CGG | + | chr8_1:82710332-82710351 | None:intergenic | 35.0% | |
| ! | ATTCTTTTCAGCATGCAACT+AGG | - | chr8_1:82710364-82710383 | Msa1219810:intron | 35.0% |
| CTGAAGATACCAGAAATTCT+TGG | - | chr8_1:82710429-82710448 | Msa1219810:intron | 35.0% | |
| !! | TGTTTTGAGTGACTGATACA+TGG | - | chr8_1:82710534-82710553 | Msa1219810:intron | 35.0% |
| AATTGTGAATTGTCAACTCC+AGG | - | chr8_1:82710718-82710737 | Msa1219810:intron | 35.0% | |
| CACACATCAGAGAATATATG+TGG | + | chr8_1:82710856-82710875 | None:intergenic | 35.0% | |
| TCATGTGTACGAGTTCTTTA+AGG | - | chr8_1:82710980-82710999 | Msa1219810:intron | 35.0% | |
| TAAACAAATGTCATCGGAAC+AGG | - | chr8_1:82711068-82711087 | Msa1219810:intron | 35.0% | |
| TACATAAGACTGGAGAATAG+GGG | + | chr8_1:82711127-82711146 | None:intergenic | 35.0% | |
| CTTTGCCCTCTATTCAAATT+AGG | - | chr8_1:82711173-82711192 | Msa1219810:intron | 35.0% | |
| GACCTCTAAATCCTTTCTAA+TGG | + | chr8_1:82711269-82711288 | None:intergenic | 35.0% | |
| ! | CAATGAGTTGGATCCAAATT+TGG | - | chr8_1:82711288-82711307 | Msa1219810:intron | 35.0% |
| TGGTTTATGACAGAACACTA+TGG | - | chr8_1:82711308-82711327 | Msa1219810:intron | 35.0% | |
| !!! | GTTGTTGTTTTGTTGGTCAA+TGG | - | chr8_1:82711381-82711400 | Msa1219810:intron | 35.0% |
| GACTAAAAAATTCACGTGTC+AGG | + | chr8_1:82711422-82711441 | None:intergenic | 35.0% | |
| !! | AAGTCTCTCTCTTTGAAATC+TGG | - | chr8_1:82711797-82711816 | Msa1219810:intron | 35.0% |
| ! | GACCCTTTTGAACAAGAATT+AGG | + | chr8_1:82711929-82711948 | None:intergenic | 35.0% |
| ! | TGAATCCCTGACTTGAAATA+CGG | + | chr8_1:82712089-82712108 | None:intergenic | 35.0% |
| GGACTTTCATTAACCTTAAG+AGG | - | chr8_1:82712191-82712210 | Msa1219810:intron | 35.0% | |
| AACCTTAAGAGGAATCTTGT+CGG | - | chr8_1:82712202-82712221 | Msa1219810:intron | 35.0% | |
| ! | CTTTTCCATGAGATTCACTT+TGG | - | chr8_1:82712322-82712341 | Msa1219810:CDS | 35.0% |
| ! | GTAACCATTTTGCACTTGAT+GGG | - | chr8_1:82712344-82712363 | Msa1219810:CDS | 35.0% |
| ATATCCCATCAAGTGCAAAA+TGG | + | chr8_1:82712351-82712370 | None:intergenic | 35.0% | |
| GACCAAAATCAGAGATTTGT+AGG | - | chr8_1:82712374-82712393 | Msa1219810:CDS | 35.0% | |
| ! | CACCTACAAATCTCTGATTT+TGG | + | chr8_1:82712379-82712398 | None:intergenic | 35.0% |
| AAAACAGATGAAGAGGATCA+AGG | + | chr8_1:82712404-82712423 | None:intergenic | 35.0% | |
| GTGATGTGAATCTAAACAGT+AGG | + | chr8_1:82712483-82712502 | None:intergenic | 35.0% | |
| GGAAGAAAAACAGTAGGAAA+AGG | + | chr8_1:82712508-82712527 | None:intergenic | 35.0% | |
| !! | GTTCTAGGAAGAAAAACAGT+AGG | + | chr8_1:82712514-82712533 | None:intergenic | 35.0% |
| !! | TTGAACGGATTAAGAGTTCT+AGG | + | chr8_1:82712529-82712548 | None:intergenic | 35.0% |
| !! | ACTTGCTGTTTCTCATTAAC+AGG | - | chr8_1:82712578-82712597 | Msa1219810:CDS | 35.0% |
| TAACAGGACTTTAAATGCCA+AGG | - | chr8_1:82712594-82712613 | Msa1219810:CDS | 35.0% | |
| TCTTAACTTTGGTCACCAAA+GGG | + | chr8_1:82712738-82712757 | None:intergenic | 35.0% | |
| TTCTTAACTTTGGTCACCAA+AGG | + | chr8_1:82712739-82712758 | None:intergenic | 35.0% | |
| TTCTGTCCAGTTCTTAACTT+TGG | + | chr8_1:82712749-82712768 | None:intergenic | 35.0% | |
| TGATTGTGTCATATTCCTCT+AGG | + | chr8_1:82712929-82712948 | None:intergenic | 35.0% | |
| TGAGCAACACTATTGAAGAT+TGG | - | chr8_1:82712966-82712985 | Msa1219810:five_prime_UTR | 35.0% | |
| !! | GGAATCTTGCAATAATGGGT+TGG | + | chr8_1:82709243-82709262 | None:intergenic | 40.0% |
| TTCTATGGTTTGAGTCGGTT+CGG | - | chr8_1:82709291-82709310 | Msa1219810:three_prime_UTR | 40.0% | |
| TCCTTGTTCTCATTTGAGCA+AGG | - | chr8_1:82709632-82709651 | Msa1219810:intron | 40.0% | |
| ACCTTGCTCAAATGAGAACA+AGG | + | chr8_1:82709636-82709655 | None:intergenic | 40.0% | |
| CTAGTGCTAGTAATAGCAGT+AGG | - | chr8_1:82709727-82709746 | Msa1219810:intron | 40.0% | |
| !! | TTTGCATCTGATTTGGAGCA+AGG | - | chr8_1:82709783-82709802 | Msa1219810:intron | 40.0% |
| !! | TTGCATCTGATTTGGAGCAA+GGG | - | chr8_1:82709784-82709803 | Msa1219810:intron | 40.0% |
| TACAGTCAAGATTCCACACA+AGG | + | chr8_1:82709994-82710013 | None:intergenic | 40.0% | |
| TATTGTTGCTCTCTGATAGG+AGG | - | chr8_1:82710079-82710098 | Msa1219810:CDS | 40.0% | |
| !! | TCTTGGTAATGTGTAGTGAC+TGG | - | chr8_1:82710446-82710465 | Msa1219810:intron | 40.0% |
| TTGAAACGATGTCTAGTGAC+TGG | - | chr8_1:82710479-82710498 | Msa1219810:intron | 40.0% | |
| ATCAAAGATTCATGCACACC+TGG | + | chr8_1:82710739-82710758 | None:intergenic | 40.0% | |
| ACATAAGACTGGAGAATAGG+GGG | + | chr8_1:82711126-82711145 | None:intergenic | 40.0% | |
| TTCTTTCGTGATAGAGGTAG+AGG | - | chr8_1:82711217-82711236 | Msa1219810:CDS | 40.0% | |
| GGATTTAGAGGTCAATGAGT+TGG | - | chr8_1:82711276-82711295 | Msa1219810:intron | 40.0% | |
| CGATCGATGTTCAACAGATA+TGG | + | chr8_1:82711444-82711463 | None:intergenic | 40.0% | |
| TATCTGTTGAACATCGATCG+CGG | - | chr8_1:82711444-82711463 | Msa1219810:intron | 40.0% | |
| AAGTAGTTCTCTTCAGCAAG+AGG | + | chr8_1:82711493-82711512 | None:intergenic | 40.0% | |
| !! | TTCAGTTCCTTGTTGGCTTT+AGG | - | chr8_1:82711545-82711564 | Msa1219810:intron | 40.0% |
| AGATACACCTAAAGCCAACA+AGG | + | chr8_1:82711555-82711574 | None:intergenic | 40.0% | |
| !! | TTGTTGGCTTTAGGTGTATC+TGG | - | chr8_1:82711554-82711573 | Msa1219810:intron | 40.0% |
| ! | ACAGAAATTAAGGGTGCATC+AGG | + | chr8_1:82711643-82711662 | None:intergenic | 40.0% |
| ! | AAGACACCGTATTTCAAGTC+AGG | - | chr8_1:82712080-82712099 | Msa1219810:intron | 40.0% |
| ! | AGACACCGTATTTCAAGTCA+GGG | - | chr8_1:82712081-82712100 | Msa1219810:intron | 40.0% |
| ACCTTAAGAGGAATCTTGTC+GGG | - | chr8_1:82712203-82712222 | Msa1219810:intron | 40.0% | |
| GTCTCGGCAGAATGTAATTA+AGG | - | chr8_1:82712261-82712280 | Msa1219810:intron | 40.0% | |
| TGGATAGAGAAGAATTTCCC+AGG | - | chr8_1:82712298-82712317 | Msa1219810:CDS | 40.0% | |
| GAATCTCATGGAAAAGTCCT+GGG | + | chr8_1:82712318-82712337 | None:intergenic | 40.0% | |
| TGAATCTCATGGAAAAGTCC+TGG | + | chr8_1:82712319-82712338 | None:intergenic | 40.0% | |
| GGTTACCAAAGTGAATCTCA+TGG | + | chr8_1:82712330-82712349 | None:intergenic | 40.0% | |
| ! | GGTAACCATTTTGCACTTGA+TGG | - | chr8_1:82712343-82712362 | Msa1219810:CDS | 40.0% |
| AATCTAAACAGTAGGGAAGG+AGG | + | chr8_1:82712475-82712494 | None:intergenic | 40.0% | |
| GTGAATCTAAACAGTAGGGA+AGG | + | chr8_1:82712478-82712497 | None:intergenic | 40.0% | |
| CTCATCAACCAACTCATTCT+TGG | + | chr8_1:82712713-82712732 | None:intergenic | 40.0% | |
| TGGTGACCAAAGTTAAGAAC+TGG | - | chr8_1:82712740-82712759 | Msa1219810:five_prime_UTR | 40.0% | |
| AGTTAAGAACTGGACAGAAG+TGG | - | chr8_1:82712750-82712769 | Msa1219810:five_prime_UTR | 40.0% | |
| CCAGCATTTGATGTAGAGAA+GGG | + | chr8_1:82712829-82712848 | None:intergenic | 40.0% | |
| TCCAGCATTTGATGTAGAGA+AGG | + | chr8_1:82712830-82712849 | None:intergenic | 40.0% | |
| GCAAGAAGATAACTACCTAG+AGG | - | chr8_1:82712911-82712930 | Msa1219810:five_prime_UTR | 40.0% | |
| TTGGAACAAGCTGTTCACTA+TGG | - | chr8_1:82712985-82713004 | Msa1219810:five_prime_UTR | 40.0% | |
| GATCAACATGAATGTAGGAG+TGG | - | chr8_1:82713057-82713076 | Msa1219810:five_prime_UTR | 40.0% | |
| TGAAGACGAAAGGAGGAAAG+TGG | + | chr8_1:82708963-82708982 | None:intergenic | 45.0% | |
| !! | AGTCGGTTCGGTTGTGTTAT+TGG | - | chr8_1:82709303-82709322 | Msa1219810:three_prime_UTR | 45.0% |
| AAATCAGATGCAAAACCGCG+AGG | + | chr8_1:82709777-82709796 | None:intergenic | 45.0% | |
| ! | TCGCGGTTTTGCATCTGATT+TGG | - | chr8_1:82709776-82709795 | Msa1219810:intron | 45.0% |
| GGAGCAAGGGAATTCTGTTA+AGG | - | chr8_1:82709797-82709816 | Msa1219810:intron | 45.0% | |
| AAACGTTGATCCCGAAAACG+AGG | + | chr8_1:82709864-82709883 | None:intergenic | 45.0% | |
| !! | GCTTGTTGTTGCTGTTGATG+TGG | - | chr8_1:82709893-82709912 | Msa1219810:CDS | 45.0% |
| ! | TGTTGCTGTTGATGTGGATG+AGG | - | chr8_1:82709899-82709918 | Msa1219810:CDS | 45.0% |
| ! | GTTGCTGTTGATGTGGATGA+GGG | - | chr8_1:82709900-82709919 | Msa1219810:CDS | 45.0% |
| TCTTAGCTGGTCAATGTGTG+AGG | - | chr8_1:82710335-82710354 | Msa1219810:intron | 45.0% | |
| CCAGCTATCATCAAACAGAG+GGG | + | chr8_1:82710573-82710592 | None:intergenic | 45.0% | |
| GCCAGCTATCATCAAACAGA+GGG | + | chr8_1:82710574-82710593 | None:intergenic | 45.0% | |
| AGCCAGCTATCATCAAACAG+AGG | + | chr8_1:82710575-82710594 | None:intergenic | 45.0% | |
| TGAGACATCGCACTGAAAAC+AGG | + | chr8_1:82710765-82710784 | None:intergenic | 45.0% | |
| ATAGAGGTAGAGGAAGACCT+AGG | - | chr8_1:82711227-82711246 | Msa1219810:CDS | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr8_1:82711357-82711376 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr8_1:82711358-82711377 | None:intergenic | 45.0% |
| ! | ACAAGCCTTATCCCACTAAG+TGG | + | chr8_1:82711359-82711378 | None:intergenic | 45.0% |
| TGGAACTGTTCACGTGATGA+AGG | - | chr8_1:82711671-82711690 | Msa1219810:intron | 45.0% | |
| ! | CTTTCGGATGACTAATGGAC+TGG | - | chr8_1:82712006-82712025 | Msa1219810:intron | 45.0% |
| TCCCGACAAGATTCCTCTTA+AGG | + | chr8_1:82712207-82712226 | None:intergenic | 45.0% | |
| GCAATAGAGTGTGCTGAAGT+TGG | - | chr8_1:82712643-82712662 | Msa1219810:CDS | 45.0% | |
| TCCTTGGTCCAAGAATGAGT+TGG | - | chr8_1:82712702-82712721 | Msa1219810:five_prime_UTR | 45.0% | |
| ACCAACTCATTCTTGGACCA+AGG | + | chr8_1:82712706-82712725 | None:intergenic | 45.0% | |
| CCCTTCTCTACATCAAATGC+TGG | - | chr8_1:82712826-82712845 | Msa1219810:five_prime_UTR | 45.0% | |
| GAACAAGCTGTTCACTATGG+TGG | - | chr8_1:82712988-82713007 | Msa1219810:five_prime_UTR | 45.0% | |
| ! | GTTCTGCTACGCCTCGTTTT+CGG | - | chr8_1:82709850-82709869 | Msa1219810:CDS | 50.0% |
| ! | TTCTGCTACGCCTCGTTTTC+GGG | - | chr8_1:82709851-82709870 | Msa1219810:CDS | 50.0% |
| AGCTTATCATGGTGCTCGCA+TGG | - | chr8_1:82710041-82710060 | Msa1219810:CDS | 50.0% | |
| TAGCTGGTCAATGTGTGAGG+TGG | - | chr8_1:82710338-82710357 | Msa1219810:intron | 50.0% | |
| ! | CCCCTCTGTTTGATGATAGC+TGG | - | chr8_1:82710570-82710589 | Msa1219810:intron | 50.0% |
| CTGGCTGCAATATTCTTGCC+TGG | - | chr8_1:82710589-82710608 | Msa1219810:intron | 50.0% | |
| TTTCCAGCATGATCTGAGCC+AGG | + | chr8_1:82710610-82710629 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr8_1:82711353-82711372 | None:intergenic | 50.0% | |
| !! | CGGATGACTAATGGACTGGT+TGG | - | chr8_1:82712010-82712029 | Msa1219810:intron | 50.0% |
| GCACACTCTATTGCATACCG+CGG | + | chr8_1:82712637-82712656 | None:intergenic | 50.0% | |
| !! | GTTGGTTGATGAGCACCCTT+TGG | - | chr8_1:82712720-82712739 | Msa1219810:five_prime_UTR | 50.0% |
| AGAGCTAATGCAAGGCCTCG+CGG | - | chr8_1:82709759-82709778 | Msa1219810:intron | 55.0% | |
| TTGCCTGGCTCAGATCATGC+TGG | - | chr8_1:82710604-82710623 | Msa1219810:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr8_1:82711345-82711364 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr8_1:82711344-82711363 | Msa1219810:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr8_1:82711345-82711364 | Msa1219810:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr8_1:82711351-82711370 | Msa1219810:intron | 55.0% | |
| TCAGGGATTCACCCTCTCCC+AGG | - | chr8_1:82712098-82712117 | Msa1219810:intron | 60.0% | |
| GAATCGCCGTCTGAGCACCT+GGG | + | chr8_1:82712118-82712137 | None:intergenic | 60.0% | |
| TGAATCGCCGTCTGAGCACC+TGG | + | chr8_1:82712119-82712138 | None:intergenic | 60.0% | |
| CCGTCTGAGCACCTGGGAGA+GGG | + | chr8_1:82712112-82712131 | None:intergenic | 65.0% | |
| CCCTCTCCCAGGTGCTCAGA+CGG | - | chr8_1:82712109-82712128 | Msa1219810:intron | 65.0% | |
| GCCGTCTGAGCACCTGGGAG+AGG | + | chr8_1:82712113-82712132 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 82708950 | 82713243 | 82708950 | ID=Msa1219810;Name=Msa1219810 |
| chr8_1 | mRNA | 82708950 | 82713243 | 82708950 | ID=Msa1219810-mRNA-1;Parent=Msa1219810;Name=Msa1219810-mRNA-1;_AED=0.26;_eAED=0.26;_QI=581|1|1|1|1|1|6|427|328 |
| chr8_1 | exon | 82708950 | 82709593 | 82708950 | ID=Msa1219810-mRNA-1:exon:29619;Parent=Msa1219810-mRNA-1 |
| chr8_1 | exon | 82709798 | 82709932 | 82709798 | ID=Msa1219810-mRNA-1:exon:29618;Parent=Msa1219810-mRNA-1 |
| chr8_1 | exon | 82710019 | 82710139 | 82710019 | ID=Msa1219810-mRNA-1:exon:29617;Parent=Msa1219810-mRNA-1 |
| chr8_1 | exon | 82710501 | 82710525 | 82710501 | ID=Msa1219810-mRNA-1:exon:29616;Parent=Msa1219810-mRNA-1 |
| chr8_1 | exon | 82711192 | 82711289 | 82711192 | ID=Msa1219810-mRNA-1:exon:29615;Parent=Msa1219810-mRNA-1 |
| chr8_1 | exon | 82712272 | 82713243 | 82712272 | ID=Msa1219810-mRNA-1:exon:29614;Parent=Msa1219810-mRNA-1 |
| chr8_1 | five_prime_UTR | 82712663 | 82713243 | 82712663 | ID=Msa1219810-mRNA-1:five_prime_utr;Parent=Msa1219810-mRNA-1 |
| chr8_1 | CDS | 82712272 | 82712662 | 82712272 | ID=Msa1219810-mRNA-1:cds;Parent=Msa1219810-mRNA-1 |
| chr8_1 | CDS | 82711192 | 82711289 | 82711192 | ID=Msa1219810-mRNA-1:cds;Parent=Msa1219810-mRNA-1 |
| chr8_1 | CDS | 82710501 | 82710525 | 82710501 | ID=Msa1219810-mRNA-1:cds;Parent=Msa1219810-mRNA-1 |
| chr8_1 | CDS | 82710019 | 82710139 | 82710019 | ID=Msa1219810-mRNA-1:cds;Parent=Msa1219810-mRNA-1 |
| chr8_1 | CDS | 82709798 | 82709932 | 82709798 | ID=Msa1219810-mRNA-1:cds;Parent=Msa1219810-mRNA-1 |
| chr8_1 | CDS | 82709377 | 82709593 | 82709377 | ID=Msa1219810-mRNA-1:cds;Parent=Msa1219810-mRNA-1 |
| chr8_1 | three_prime_UTR | 82708950 | 82709376 | 82708950 | ID=Msa1219810-mRNA-1:three_prime_utr;Parent=Msa1219810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
