Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780810 | KEH28372.1 | 96.894 | 483 | 15 | 0 | 1 | 483 | 8 | 490 | 0.0 | 949 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780810 | A0A072UFD7 | 96.894 | 483 | 15 | 0 | 1 | 483 | 8 | 490 | 0.0 | 949 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040690 | Msa0780810 | 0.807520 | 4.856605e-50 | -8.615850e-47 |
| Msa0623790 | Msa0780810 | 0.807817 | 4.200388e-50 | -8.615850e-47 |
| Msa0643560 | Msa0780810 | 0.815511 | 8.903120e-52 | -8.615850e-47 |
| Msa0675410 | Msa0780810 | 0.809313 | 2.012938e-50 | -8.615850e-47 |
| Msa0711780 | Msa0780810 | 0.802450 | 5.578777e-49 | -8.615850e-47 |
| Msa0780810 | Msa0794670 | 0.803875 | 2.828475e-49 | -8.615850e-47 |
| Msa0780810 | Msa1374120 | 0.802889 | 4.528740e-49 | -8.615850e-47 |
| Msa0780810 | Msa1394290 | 0.807161 | 5.785883e-50 | -8.615850e-47 |
| Msa0402650 | Msa0780810 | 0.804508 | 2.088377e-49 | -8.615850e-47 |
| Msa0449210 | Msa0780810 | 0.818362 | 2.039462e-52 | -8.615850e-47 |
| Msa0497490 | Msa0780810 | 0.811453 | 6.948989e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780810 | MtrunA17_Chr5g0441561 | 96.894 | 483 | 15 | 0 | 1 | 483 | 121 | 603 | 0.0 | 947 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780810 | AT5G12220.1 | 35.992 | 514 | 269 | 12 | 5 | 483 | 123 | 611 | 1.66e-74 | 246 |
| Msa0780810 | AT5G12220.2 | 34.825 | 514 | 264 | 14 | 5 | 483 | 123 | 600 | 1.89e-64 | 219 |
Find 112 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGGTTAAAATCTAATTAT+TGG | 0.155321 | 5_2:+62896876 | Msa0780810:CDS |
| TGCTCGTATTTCCTCAATTA+AGG | 0.222153 | 5_2:+62896041 | Msa0780810:CDS |
| ACCTTATGGTAGGTGGGATT+TGG | 0.251666 | 5_2:+62899691 | Msa0780810:CDS |
| GCATGGCTTGTTCGAATTCT+TGG | 0.266291 | 5_2:+62899015 | Msa0780810:CDS |
| CACGCATTGATTCTTCGAAT+TGG | 0.270810 | 5_2:-62899278 | None:intergenic |
| GCGGCGGCTGCTGACGAAAA+AGG | 0.294854 | 5_2:+62895539 | Msa0780810:CDS |
| CTCCCAAGAAACCGATTAAA+AGG | 0.301927 | 5_2:+62898340 | Msa0780810:CDS |
| TTGGTTAAAATCTAATTATT+GGG | 0.303829 | 5_2:+62896877 | Msa0780810:CDS |
| CCTCGGGTTGTTGGTTCATC+TGG | 0.313870 | 5_2:+62899438 | Msa0780810:CDS |
| ATCTTTCTTCTTTGTTTGCA+TGG | 0.320771 | 5_2:+62898998 | Msa0780810:CDS |
| AGGAGGTTCAGAAATAATTC+TGG | 0.323886 | 5_2:-62898555 | None:intergenic |
| CTTCAAACATTAGTAATAAC+AGG | 0.327512 | 5_2:-62899919 | None:intergenic |
| ATGAGGGAGACTGAAGAATT+TGG | 0.335005 | 5_2:+62899606 | Msa0780810:CDS |
| GGCATATTTGCTGCATTAGA+AGG | 0.335670 | 5_2:-62899045 | None:intergenic |
| TCCCACCATAGATCATGTTT+TGG | 0.335800 | 5_2:+62898491 | Msa0780810:CDS |
| TTGCAGATAACCCAAGTATT+GGG | 0.356126 | 5_2:+62898938 | Msa0780810:intron |
| CATCAGAAAGGAAAGGGAAT+TGG | 0.365554 | 5_2:+62899508 | Msa0780810:CDS |
| ATTATTTCTGAACCTCCTTA+AGG | 0.380267 | 5_2:+62898560 | Msa0780810:CDS |
| ACGCATTGATTCTTCGAATT+GGG | 0.385867 | 5_2:-62899277 | None:intergenic |
| ATCAGCCAAAACATGATCTA+TGG | 0.385899 | 5_2:-62898496 | None:intergenic |
| GGATCTTGAAATCTCTTCTT+CGG | 0.386804 | 5_2:+62898361 | Msa0780810:CDS |
| GATACTTTCAGGCACTTGAT+TGG | 0.391649 | 5_2:+62896858 | Msa0780810:intron |
| GTCCAATTGGTATGTTGCCT+CGG | 0.393620 | 5_2:+62899421 | Msa0780810:CDS |
| AGAAGTTGTGTCTGTGCTGT+TGG | 0.402368 | 5_2:+62898404 | Msa0780810:CDS |
| GGTATGTTGCCTCGGGTTGT+TGG | 0.406885 | 5_2:+62899429 | Msa0780810:CDS |
| TTTGCAGATAACCCAAGTAT+TGG | 0.418355 | 5_2:+62898937 | Msa0780810:intron |
| TCCTTAAGGAAGTTCTTCAT+AGG | 0.421724 | 5_2:+62898574 | Msa0780810:CDS |
| GAGTATGCAATCCCAATACT+TGG | 0.426224 | 5_2:-62898949 | None:intergenic |
| TCTTCATAGGATTGAAGCTC+GGG | 0.439750 | 5_2:+62898587 | Msa0780810:CDS |
| CAGGCCGGACACCTCTATAT+AGG | 0.444527 | 5_2:-62899878 | None:intergenic |
| CAGAAAGTTCAATTGCTCTC+TGG | 0.449961 | 5_2:+62899186 | Msa0780810:CDS |
| ACCCGAGGCAACATACCAAT+TGG | 0.455048 | 5_2:-62899423 | None:intergenic |
| TCCTATGAAGAACTTCCTTA+AGG | 0.455483 | 5_2:-62898575 | None:intergenic |
| TTAGCAATCTGTTTGAAAGT+TGG | 0.455524 | 5_2:+62896980 | Msa0780810:CDS |
| AGTTCATGCAAAACCCTCTT+CGG | 0.468762 | 5_2:-62899066 | None:intergenic |
| TTATAAAATCTGAGTATGAC+AGG | 0.471238 | 5_2:-62898525 | None:intergenic |
| ATCTGAAGGGGCATCTCGCT+TGG | 0.479158 | 5_2:-62899550 | None:intergenic |
| TCATGGAACCCATGTCCAAT+TGG | 0.480943 | 5_2:+62899408 | Msa0780810:CDS |
| GAAGATATGAAGTGTGAAGA+AGG | 0.481420 | 5_2:+62898609 | Msa0780810:CDS |
| GCATTGTCTTCACCATGAAA+AGG | 0.491393 | 5_2:-62896920 | None:intergenic |
| AGAGGGGAAAGGATACCTTA+TGG | 0.493149 | 5_2:+62899677 | Msa0780810:CDS |
| ACTCAACTGTTAAGAAAATG+AGG | 0.498965 | 5_2:+62899589 | Msa0780810:CDS |
| TTATCGATAACATGAAGAAC+GGG | 0.500813 | 5_2:-62899468 | None:intergenic |
| TATCCTTTCCCCTCTTCCGT+TGG | 0.503895 | 5_2:-62899669 | None:intergenic |
| GGATAAATCTCCAACGGAAG+AGG | 0.505062 | 5_2:+62899659 | Msa0780810:CDS |
| CTATATAGAGGTGTCCGGCC+TGG | 0.505259 | 5_2:+62899879 | Msa0780810:three_prime_UTR |
| TCCAAATCCCACCTACCATA+AGG | 0.505361 | 5_2:-62899692 | None:intergenic |
| ATCAAGCATCAGAAAGGAAA+GGG | 0.510699 | 5_2:+62899502 | Msa0780810:CDS |
| GCAATCTGTTTGAAAGTTGG+CGG | 0.510725 | 5_2:+62896983 | Msa0780810:CDS |
| AGACTGAAGAAACAGAGGTA+TGG | 0.512103 | 5_2:+62899373 | Msa0780810:CDS |
| CGATGAATCTCCAATGGAAG+AGG | 0.516545 | 5_2:+62899638 | Msa0780810:CDS |
| TCCAATTGGTATGTTGCCTC+GGG | 0.519322 | 5_2:+62899422 | Msa0780810:CDS |
| AGAAACAGAGGTATGGGCTC+TGG | 0.519677 | 5_2:+62899380 | Msa0780810:CDS |
| GGAGATTTATCCTCTTCCAT+TGG | 0.520251 | 5_2:-62899648 | None:intergenic |
| ATCACATCTCTGCGACAAGC+AGG | 0.521005 | 5_2:+62899110 | Msa0780810:CDS |
| GTCTAGTACCTTACTTCTCA+AGG | 0.521133 | 5_2:+62897015 | Msa0780810:CDS |
| GATAAATCTCCAACGGAAGA+GGG | 0.524186 | 5_2:+62899660 | Msa0780810:CDS |
| CAATCTGTTTGAAAGTTGGC+GGG | 0.528561 | 5_2:+62896984 | Msa0780810:CDS |
| AAAAGGCCTTCCACGCATGC+TGG | 0.529221 | 5_2:+62895556 | Msa0780810:CDS |
| GACTGAAGAAACAGAGGTAT+GGG | 0.529855 | 5_2:+62899374 | Msa0780810:CDS |
| GATACCTATATAGAGGTGTC+CGG | 0.541931 | 5_2:+62899874 | Msa0780810:three_prime_UTR |
| TTCTTCATAGGATTGAAGCT+CGG | 0.542659 | 5_2:+62898586 | Msa0780810:CDS |
| GCTAAGTGAAGCTAAGCAGC+AGG | 0.544704 | 5_2:-62899780 | None:intergenic |
| AATGAGCCATACCTTAATTG+AGG | 0.545010 | 5_2:-62896052 | None:intergenic |
| TATCAACCAGCATGCGTGGA+AGG | 0.547615 | 5_2:-62895562 | None:intergenic |
| GGATTATGATACCTATATAG+AGG | 0.548658 | 5_2:+62899867 | Msa0780810:three_prime_UTR |
| AACACAATCAAGCATCAGAA+AGG | 0.549443 | 5_2:+62899496 | Msa0780810:CDS |
| TATGGGCTCTGGCAAAGTCA+TGG | 0.561688 | 5_2:+62899391 | Msa0780810:CDS |
| AGTATGCAATCCCAATACTT+GGG | 0.562491 | 5_2:-62898948 | None:intergenic |
| CGAATATCAACCAGCATGCG+TGG | 0.566509 | 5_2:-62895566 | None:intergenic |
| TCTCTGCGACAAGCAGGTCA+TGG | 0.573508 | 5_2:+62899116 | Msa0780810:CDS |
| AAAGGATACCTTATGGTAGG+TGG | 0.574733 | 5_2:+62899684 | Msa0780810:CDS |
| GAGAAGTAAGGTACTAGACT+CGG | 0.574772 | 5_2:-62897011 | None:intergenic |
| AAAGGAATTGCTTTGCTCTG+AGG | 0.577350 | 5_2:-62896902 | None:intergenic |
| ATACGAGCAAGCTTGAGAGA+TGG | 0.578468 | 5_2:-62896027 | None:intergenic |
| AAAACGGGTGATGCTTCTGT+TGG | 0.580533 | 5_2:+62898468 | Msa0780810:CDS |
| ATTAAACGATGAATCTCCAA+TGG | 0.581110 | 5_2:+62899632 | Msa0780810:CDS |
| TCGAGTAGCTGAATATCTGA+AGG | 0.584840 | 5_2:-62899564 | None:intergenic |
| CACAACTTCTGAAGAGAAGG+AGG | 0.586748 | 5_2:-62898391 | None:intergenic |
| AGACACAACTTCTGAAGAGA+AGG | 0.587729 | 5_2:-62898394 | None:intergenic |
| TCTCCAACGGAAGAGGGGAA+AGG | 0.590522 | 5_2:+62899666 | Msa0780810:CDS |
| TTTCAGAGGTATCACATCGT+GGG | 0.591314 | 5_2:+62896001 | Msa0780810:intron |
| GTTATCGATAACATGAAGAA+CGG | 0.591533 | 5_2:-62899469 | None:intergenic |
| AGCCAAAACATGATCTATGG+TGG | 0.592546 | 5_2:-62898493 | None:intergenic |
| AATCAAGCATCAGAAAGGAA+AGG | 0.596186 | 5_2:+62899501 | Msa0780810:CDS |
| CGAGTAGCTGAATATCTGAA+GGG | 0.600315 | 5_2:-62899563 | None:intergenic |
| TGCAGCAAATATGCCGAAGA+GGG | 0.601191 | 5_2:+62899053 | Msa0780810:CDS |
| AATGTATAACTCAACCAGGC+CGG | 0.602644 | 5_2:-62899893 | None:intergenic |
| AGAAGTAAGGTACTAGACTC+GGG | 0.605681 | 5_2:-62897010 | None:intergenic |
| TCTAGTACCTTACTTCTCAA+GGG | 0.609550 | 5_2:+62897016 | Msa0780810:CDS |
| TATGAAGAACTTCCTTAAGG+AGG | 0.611863 | 5_2:-62898572 | None:intergenic |
| GCCAAAACATGATCTATGGT+GGG | 0.618599 | 5_2:-62898492 | None:intergenic |
| CGAAGAATGCTGAGAAGTCG+CGG | 0.624078 | 5_2:+62895495 | Msa0780810:CDS |
| CTCAACTGTTAAGAAAATGA+GGG | 0.626067 | 5_2:+62899590 | Msa0780810:CDS |
| GGAAGAGGATAAATCTCCAA+CGG | 0.627543 | 5_2:+62899653 | Msa0780810:CDS |
| AAGGATACCTTATGGTAGGT+GGG | 0.631201 | 5_2:+62899685 | Msa0780810:CDS |
| ATGCAGCAAATATGCCGAAG+AGG | 0.638862 | 5_2:+62899052 | Msa0780810:CDS |
| GGGAAAGGATACCTTATGGT+AGG | 0.643384 | 5_2:+62899681 | Msa0780810:CDS |
| GGCAACATACCAATTGGACA+TGG | 0.644160 | 5_2:-62899417 | None:intergenic |
| CCAGATGAACCAACAACCCG+AGG | 0.644239 | 5_2:-62899438 | None:intergenic |
| TGGGATTTGGAAGAAAGTAA+CGG | 0.650098 | 5_2:+62899704 | Msa0780810:CDS |
| ATAAATCTCCAACGGAAGAG+GGG | 0.652995 | 5_2:+62899661 | Msa0780810:CDS |
| GACAAATGTATAACTCAACC+AGG | 0.654243 | 5_2:-62899897 | None:intergenic |
| TTGTGAGACTGAAGAAACAG+AGG | 0.663335 | 5_2:+62899368 | Msa0780810:CDS |
| GAGTAGCTGAATATCTGAAG+GGG | 0.666409 | 5_2:-62899562 | None:intergenic |
| CGATAACATGAAGAACGGGA+AGG | 0.671753 | 5_2:-62899464 | None:intergenic |
| ATTTCAGAGGTATCACATCG+TGG | 0.672973 | 5_2:+62896000 | Msa0780810:intron |
| ATGCTGGTTGATATTCGTCA+CGG | 0.680659 | 5_2:+62895572 | Msa0780810:CDS |
| GAAAGAATATACGACAATAG+CGG | 0.687272 | 5_2:+62895520 | Msa0780810:CDS |
| GCAACATACCAATTGGACAT+GGG | 0.692578 | 5_2:-62899416 | None:intergenic |
| AGAATATACGACAATAGCGG+CGG | 0.710334 | 5_2:+62895523 | Msa0780810:CDS |
| GATTTGGAAGAAAGTAACGG+AGG | 0.731702 | 5_2:+62899707 | Msa0780810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAACAAATTATAATTAAAT+AGG | - | chr5_2:62896754-62896773 | None:intergenic | 10.0% |
| !! | AAAAGAAATTAATTAAATTG+CGG | - | chr5_2:62897556-62897575 | None:intergenic | 10.0% |
| !! | TAGTCAATAAAAATATATAA+AGG | + | chr5_2:62897966-62897985 | Msa0780810:intron | 10.0% |
| !!! | AAGTTTTTTTTTTTTTAGTT+AGG | + | chr5_2:62899845-62899864 | Msa0780810:three_prime_UTR | 10.0% |
| !!! | AGTTTTTTTTTTTTTAGTTA+GGG | + | chr5_2:62899846-62899865 | Msa0780810:three_prime_UTR | 10.0% |
| !!! | GATAAGAGTTTTTAATAATA+AGG | + | chr5_2:62895661-62895680 | Msa0780810:intron | 15.0% |
| !! | ATGTTTATATTCTAATATCA+TGG | - | chr5_2:62896634-62896653 | None:intergenic | 15.0% |
| !!! | TTAACTAGTGTTTATTTTAT+TGG | + | chr5_2:62896653-62896672 | Msa0780810:intron | 15.0% |
| !! | ATTGGTTAAAATCTAATTAT+TGG | + | chr5_2:62896876-62896895 | Msa0780810:CDS | 15.0% |
| !! | TTGGTTAAAATCTAATTATT+GGG | + | chr5_2:62896877-62896896 | Msa0780810:CDS | 15.0% |
| !!! | TTCAACATTAAAGTATTAAA+CGG | - | chr5_2:62897222-62897241 | None:intergenic | 15.0% |
| !! | TTATAAAAAATCTCAAGTAT+TGG | + | chr5_2:62897578-62897597 | Msa0780810:intron | 15.0% |
| !!! | ATCAGTAATAATTAATGTTT+TGG | + | chr5_2:62898283-62898302 | Msa0780810:intron | 15.0% |
| !!! | TCAGTAATAATTAATGTTTT+GGG | + | chr5_2:62898284-62898303 | Msa0780810:intron | 15.0% |
| !!! | AAATTTTTATGATTTCATGT+TGG | - | chr5_2:62898832-62898851 | None:intergenic | 15.0% |
| !! | TTTGACAAATTTATCCAAAA+AGG | - | chr5_2:62895613-62895632 | None:intergenic | 20.0% |
| !! | AAGCAACAAAACTAAATTTA+TGG | - | chr5_2:62895817-62895836 | None:intergenic | 20.0% |
| !! | TTAAGACATCATTCTTTAAA+AGG | - | chr5_2:62896335-62896354 | None:intergenic | 20.0% |
| !!! | TGGGTTAACTATATTTTTTT+TGG | + | chr5_2:62896560-62896579 | Msa0780810:intron | 20.0% |
| !!! | CTTTTTTTATCAGTATAGAT+AGG | + | chr5_2:62896593-62896612 | Msa0780810:intron | 20.0% |
| !!! | AGTGTTTATTTTATTGGAAT+TGG | + | chr5_2:62896659-62896678 | Msa0780810:intron | 20.0% |
| !! | AGTGTTTATATTAAGATCTT+GGG | - | chr5_2:62896779-62896798 | None:intergenic | 20.0% |
| !! | AAAGAATAAAGTGATCTAAA+GGG | - | chr5_2:62897121-62897140 | None:intergenic | 20.0% |
| !! | TAAAGAATAAAGTGATCTAA+AGG | - | chr5_2:62897122-62897141 | None:intergenic | 20.0% |
| !!! | ACATGCCAAAATTTTAAATT+GGG | - | chr5_2:62897247-62897266 | None:intergenic | 20.0% |
| !! | AGATAACAAAAACAAAAGAT+AGG | - | chr5_2:62897790-62897809 | None:intergenic | 20.0% |
| !! | TAAGTTATATTCATTCTTTG+AGG | - | chr5_2:62897822-62897841 | None:intergenic | 20.0% |
| !!! | GTTATTTAATATTTTAGAGC+TGG | + | chr5_2:62898187-62898206 | Msa0780810:intron | 20.0% |
| !! | AAAAAATCTTAGAGCCTTTT+TGG | + | chr5_2:62895596-62895615 | Msa0780810:intron | 25.0% |
| ! | GTATAAGTTATAACTTCCTT+CGG | + | chr5_2:62895707-62895726 | Msa0780810:intron | 25.0% |
| ! | AACATGATTAAAGATGCTAA+TGG | - | chr5_2:62895771-62895790 | None:intergenic | 25.0% |
| ! | CAATAAGTAAAACAAAAAGC+AGG | - | chr5_2:62895975-62895994 | None:intergenic | 25.0% |
| !! | TGACAATCTTTTTACTTCTT+TGG | + | chr5_2:62896098-62896117 | Msa0780810:intron | 25.0% |
| !! | GACAATCTTTTTACTTCTTT+GGG | + | chr5_2:62896099-62896118 | Msa0780810:intron | 25.0% |
| !! | TCATTCTTTAAAAGGTCAAA+GGG | - | chr5_2:62896327-62896346 | None:intergenic | 25.0% |
| !! | ATCATTCTTTAAAAGGTCAA+AGG | - | chr5_2:62896328-62896347 | None:intergenic | 25.0% |
| ! | AAAACCTCATTTGATATCAT+AGG | + | chr5_2:62896405-62896424 | Msa0780810:intron | 25.0% |
| ! | GAGTGTTTATATTAAGATCT+TGG | - | chr5_2:62896780-62896799 | None:intergenic | 25.0% |
| ! | AAGTTACAACATGAAGAAAA+AGG | - | chr5_2:62897063-62897082 | None:intergenic | 25.0% |
| !!! | GAAAGCCCAATTTAAAATTT+TGG | + | chr5_2:62897239-62897258 | Msa0780810:intron | 25.0% |
| !! | CACATGCCAAAATTTTAAAT+TGG | - | chr5_2:62897248-62897267 | None:intergenic | 25.0% |
| !!! | CAATTTAAAATTTTGGCATG+TGG | + | chr5_2:62897246-62897265 | Msa0780810:intron | 25.0% |
| !! | TATTATCACAGGCTAAATTT+TGG | + | chr5_2:62897281-62897300 | Msa0780810:intron | 25.0% |
| !! | ATTATCACAGGCTAAATTTT+GGG | + | chr5_2:62897282-62897301 | Msa0780810:intron | 25.0% |
| !! | ATGTTTTCTCTTTGAATTCT+CGG | + | chr5_2:62897509-62897528 | Msa0780810:intron | 25.0% |
| ! | TGAAAAAAAAAAAATAGGGC+TGG | - | chr5_2:62897651-62897670 | None:intergenic | 25.0% |
| ! | AAATGACAAAAGCAAAAGAT+AGG | - | chr5_2:62897866-62897885 | None:intergenic | 25.0% |
| !!! | TATATAAAGGAGTATGCTTT+TGG | + | chr5_2:62897979-62897998 | Msa0780810:intron | 25.0% |
| !!! | ATATAAAGGAGTATGCTTTT+GGG | + | chr5_2:62897980-62897999 | Msa0780810:intron | 25.0% |
| ! | ATTAAATAACCCAATACTCA+GGG | - | chr5_2:62898177-62898196 | None:intergenic | 25.0% |
| ! | TATTAAATAACCCAATACTC+AGG | - | chr5_2:62898178-62898197 | None:intergenic | 25.0% |
| !! | GATTTCAAGATCCTTTTAAT+CGG | - | chr5_2:62898354-62898373 | None:intergenic | 25.0% |
| ! | TTATAAAATCTGAGTATGAC+AGG | - | chr5_2:62898528-62898547 | None:intergenic | 25.0% |
| ! | CTTCAAACATTAGTAATAAC+AGG | - | chr5_2:62899922-62899941 | None:intergenic | 25.0% |
| GAAAGAATATACGACAATAG+CGG | + | chr5_2:62895520-62895539 | Msa0780810:CDS | 30.0% | |
| TGGAAAAAATTATATGCCGA+AGG | - | chr5_2:62895726-62895745 | None:intergenic | 30.0% | |
| !!! | GGCATATAATTTTTTCCACA+AGG | + | chr5_2:62895728-62895747 | Msa0780810:intron | 30.0% |
| AAACTAAATATGAGACCTTG+TGG | - | chr5_2:62895746-62895765 | None:intergenic | 30.0% | |
| TTATAGAATAAGACGAAGCT+AGG | - | chr5_2:62895858-62895877 | None:intergenic | 30.0% | |
| GTATTTCCTCAATTAAGGTA+TGG | + | chr5_2:62896046-62896065 | Msa0780810:intron | 30.0% | |
| CTAACAACGTAACCAAATTA+TGG | - | chr5_2:62896156-62896175 | None:intergenic | 30.0% | |
| GTTAGCATTTAGGAAAGAAT+TGG | + | chr5_2:62896171-62896190 | Msa0780810:intron | 30.0% | |
| TGAGTGTATATATGTTTGTC+TGG | + | chr5_2:62896236-62896255 | Msa0780810:intron | 30.0% | |
| GAGAAGAGGATATTCTATAA+AGG | - | chr5_2:62896381-62896400 | None:intergenic | 30.0% | |
| ! | GATATCAAATGAGGTTTTCA+TGG | - | chr5_2:62896403-62896422 | None:intergenic | 30.0% |
| !! | ATATGTTTTTCGATAACGCA+TGG | + | chr5_2:62896704-62896723 | Msa0780810:intron | 30.0% |
| !! | TATGTTTTTCGATAACGCAT+GGG | + | chr5_2:62896705-62896724 | Msa0780810:intron | 30.0% |
| TTGAAAATACTTGGTATGGA+AGG | - | chr5_2:62896806-62896825 | None:intergenic | 30.0% | |
| ! | TGAGTTGAAAATACTTGGTA+TGG | - | chr5_2:62896810-62896829 | None:intergenic | 30.0% |
| ! | ATAGTCTTACTGATACTTTC+AGG | + | chr5_2:62896847-62896866 | Msa0780810:intron | 30.0% |
| TTAGCAATCTGTTTGAAAGT+TGG | + | chr5_2:62896980-62896999 | Msa0780810:CDS | 30.0% | |
| ! | TTATCACAGGCTAAATTTTG+GGG | + | chr5_2:62897283-62897302 | Msa0780810:intron | 30.0% |
| AAAGAGATGAAGAAGAAAAC+AGG | - | chr5_2:62897359-62897378 | None:intergenic | 30.0% | |
| ! | TGTTTTATATGCCTTTTTGC+AGG | + | chr5_2:62897392-62897411 | Msa0780810:intron | 30.0% |
| ! | GTTTTATATGCCTTTTTGCA+GGG | + | chr5_2:62897393-62897412 | Msa0780810:intron | 30.0% |
| !! | AAAAAATCTCAAGTATTGGC+AGG | + | chr5_2:62897582-62897601 | Msa0780810:intron | 30.0% |
| !! | AAAAATCTCAAGTATTGGCA+GGG | + | chr5_2:62897583-62897602 | Msa0780810:intron | 30.0% |
| TGTAATTGAACGTGATGTAT+TGG | + | chr5_2:62897715-62897734 | Msa0780810:intron | 30.0% | |
| ! | GTTTTTCTAACTCATGGTTA+TGG | + | chr5_2:62897756-62897775 | Msa0780810:intron | 30.0% |
| !! | TATAAAGGAGTATGCTTTTG+GGG | + | chr5_2:62897981-62898000 | Msa0780810:intron | 30.0% |
| TTAAATAACCCAATACTCAG+GGG | - | chr5_2:62898176-62898195 | None:intergenic | 30.0% | |
| !! | ATCCTTTTAATCGGTTTCTT+GGG | - | chr5_2:62898345-62898364 | None:intergenic | 30.0% |
| CTCAGAGTTCAAAAAGAAAA+CGG | + | chr5_2:62898452-62898471 | Msa0780810:CDS | 30.0% | |
| TCAGAGTTCAAAAAGAAAAC+GGG | + | chr5_2:62898453-62898472 | Msa0780810:CDS | 30.0% | |
| !! | ATTATTTCTGAACCTCCTTA+AGG | + | chr5_2:62898560-62898579 | Msa0780810:CDS | 30.0% |
| ! | ATTTGAAACTTCCGATGTAA+AGG | - | chr5_2:62898665-62898684 | None:intergenic | 30.0% |
| TTCAAATCGCTTAATTGTTG+TGG | + | chr5_2:62898678-62898697 | Msa0780810:intron | 30.0% | |
| TCAAATCGCTTAATTGTTGT+GGG | + | chr5_2:62898679-62898698 | Msa0780810:intron | 30.0% | |
| !! | TATGATTTCATGTTGGCTTA+AGG | - | chr5_2:62898825-62898844 | None:intergenic | 30.0% |
| ! | ATCTTTCTTCTTTGTTTGCA+TGG | + | chr5_2:62898998-62899017 | Msa0780810:CDS | 30.0% |
| TTATCGATAACATGAAGAAC+GGG | - | chr5_2:62899471-62899490 | None:intergenic | 30.0% | |
| GTTATCGATAACATGAAGAA+CGG | - | chr5_2:62899472-62899491 | None:intergenic | 30.0% | |
| ACTCAACTGTTAAGAAAATG+AGG | + | chr5_2:62899589-62899608 | Msa0780810:CDS | 30.0% | |
| CTCAACTGTTAAGAAAATGA+GGG | + | chr5_2:62899590-62899609 | Msa0780810:CDS | 30.0% | |
| ATTAAACGATGAATCTCCAA+TGG | + | chr5_2:62899632-62899651 | Msa0780810:CDS | 30.0% | |
| GGATTATGATACCTATATAG+AGG | + | chr5_2:62899867-62899886 | Msa0780810:three_prime_UTR | 30.0% | |
| !!! | TTGTTGCTTTTGTAGCTAGA+AGG | + | chr5_2:62895828-62895847 | Msa0780810:intron | 35.0% |
| TTGCATGATGCTATGCTAAT+TGG | + | chr5_2:62895900-62895919 | Msa0780810:intron | 35.0% | |
| TGCATGATGCTATGCTAATT+GGG | + | chr5_2:62895901-62895920 | Msa0780810:intron | 35.0% | |
| !! | ACTTATTGCTGCTATTTCAG+AGG | + | chr5_2:62895987-62896006 | Msa0780810:intron | 35.0% |
| TGCTCGTATTTCCTCAATTA+AGG | + | chr5_2:62896041-62896060 | Msa0780810:CDS | 35.0% | |
| AATGAGCCATACCTTAATTG+AGG | - | chr5_2:62896055-62896074 | None:intergenic | 35.0% | |
| TGGTTACGTTGTTAGCATTT+AGG | + | chr5_2:62896161-62896180 | Msa0780810:intron | 35.0% | |
| ! | TTCTCTAAAAGTGGCTTATC+AGG | - | chr5_2:62896278-62896297 | None:intergenic | 35.0% |
| ! | CAGATGATCTTCTCTAAAAG+TGG | - | chr5_2:62896287-62896306 | None:intergenic | 35.0% |
| AGGTCCTATGATATCAAATG+AGG | - | chr5_2:62896412-62896431 | None:intergenic | 35.0% | |
| CATTTGATATCATAGGACCT+TGG | + | chr5_2:62896412-62896431 | Msa0780810:intron | 35.0% | |
| ACAACTTTGATACACAAGCT+AGG | - | chr5_2:62896517-62896536 | None:intergenic | 35.0% | |
| AATAGGTAACCACATGAATG+TGG | - | chr5_2:62896737-62896756 | None:intergenic | 35.0% | |
| ! | AGCAGTGAGTTGAAAATACT+TGG | - | chr5_2:62896815-62896834 | None:intergenic | 35.0% |
| ! | AGCAAAGCAATTCCTTTTCA+TGG | + | chr5_2:62896908-62896927 | Msa0780810:CDS | 35.0% |
| TCTAGTACCTTACTTCTCAA+GGG | + | chr5_2:62897016-62897035 | Msa0780810:CDS | 35.0% | |
| AGTTCTTTGGCTATTATCAC+AGG | + | chr5_2:62897270-62897289 | Msa0780810:intron | 35.0% | |
| ! | CTTTTACTAGTCCAAAGAGA+GGG | + | chr5_2:62897329-62897348 | Msa0780810:intron | 35.0% |
| TGATTTATAGCCCTGCAAAA+AGG | - | chr5_2:62897406-62897425 | None:intergenic | 35.0% | |
| TAGAGTTCTATCATGCTTAG+AGG | + | chr5_2:62897463-62897482 | Msa0780810:intron | 35.0% | |
| ! | TTGCGGAAAAAGTATAATCC+TGG | - | chr5_2:62897539-62897558 | None:intergenic | 35.0% |
| !! | AAAATCTCAAGTATTGGCAG+GGG | + | chr5_2:62897584-62897603 | Msa0780810:intron | 35.0% |
| AAAAAAAAATAGGGCTGGAC+TGG | - | chr5_2:62897646-62897665 | None:intergenic | 35.0% | |
| ! | GTGTGTGTTTTTCTAACTCA+TGG | + | chr5_2:62897750-62897769 | Msa0780810:intron | 35.0% |
| !! | GATCCTTTTAATCGGTTTCT+TGG | - | chr5_2:62898346-62898365 | None:intergenic | 35.0% |
| GGATCTTGAAATCTCTTCTT+CGG | + | chr5_2:62898361-62898380 | Msa0780810:CDS | 35.0% | |
| ! | CGTTTTCTTTTTGAACTCTG+AGG | - | chr5_2:62898454-62898473 | None:intergenic | 35.0% |
| ATCAGCCAAAACATGATCTA+TGG | - | chr5_2:62898499-62898518 | None:intergenic | 35.0% | |
| !!! | TAGATCATGTTTTGGCTGAT+TGG | + | chr5_2:62898499-62898518 | Msa0780810:CDS | 35.0% |
| AGGAGGTTCAGAAATAATTC+TGG | - | chr5_2:62898558-62898577 | None:intergenic | 35.0% | |
| TATGAAGAACTTCCTTAAGG+AGG | - | chr5_2:62898575-62898594 | None:intergenic | 35.0% | |
| TCCTTAAGGAAGTTCTTCAT+AGG | + | chr5_2:62898574-62898593 | Msa0780810:CDS | 35.0% | |
| TCCTATGAAGAACTTCCTTA+AGG | - | chr5_2:62898578-62898597 | None:intergenic | 35.0% | |
| TTCTTCATAGGATTGAAGCT+CGG | + | chr5_2:62898586-62898605 | Msa0780810:CDS | 35.0% | |
| GAAGATATGAAGTGTGAAGA+AGG | + | chr5_2:62898609-62898628 | Msa0780810:CDS | 35.0% | |
| ATATGAAGTGTGAAGAAGGT+AGG | + | chr5_2:62898613-62898632 | Msa0780810:intron | 35.0% | |
| ATGTAAAGGAGAAATGTGGT+CGG | - | chr5_2:62898651-62898670 | None:intergenic | 35.0% | |
| ACCACATTTCTCCTTTACAT+CGG | + | chr5_2:62898651-62898670 | Msa0780810:intron | 35.0% | |
| !!! | TGCTGATGGGAATGTTTTTT+TGG | + | chr5_2:62898791-62898810 | Msa0780810:intron | 35.0% |
| TTTCCATCCTTTAATTCAGC+TGG | + | chr5_2:62898849-62898868 | Msa0780810:intron | 35.0% | |
| TTCCATCCTTTAATTCAGCT+GGG | + | chr5_2:62898850-62898869 | Msa0780810:intron | 35.0% | |
| TTTGCAGATAACCCAAGTAT+TGG | + | chr5_2:62898937-62898956 | Msa0780810:intron | 35.0% | |
| TTGCAGATAACCCAAGTATT+GGG | + | chr5_2:62898938-62898957 | Msa0780810:intron | 35.0% | |
| AGTATGCAATCCCAATACTT+GGG | - | chr5_2:62898951-62898970 | None:intergenic | 35.0% | |
| !! | ACGCATTGATTCTTCGAATT+GGG | - | chr5_2:62899280-62899299 | None:intergenic | 35.0% |
| AACACAATCAAGCATCAGAA+AGG | + | chr5_2:62899496-62899515 | Msa0780810:CDS | 35.0% | |
| AATCAAGCATCAGAAAGGAA+AGG | + | chr5_2:62899501-62899520 | Msa0780810:CDS | 35.0% | |
| ATCAAGCATCAGAAAGGAAA+GGG | + | chr5_2:62899502-62899521 | Msa0780810:CDS | 35.0% | |
| TGGGATTTGGAAGAAAGTAA+CGG | + | chr5_2:62899704-62899723 | Msa0780810:CDS | 35.0% | |
| GACAAATGTATAACTCAACC+AGG | - | chr5_2:62899900-62899919 | None:intergenic | 35.0% | |
| AGAATATACGACAATAGCGG+CGG | + | chr5_2:62895523-62895542 | Msa0780810:CDS | 40.0% | |
| ! | ATGCTGGTTGATATTCGTCA+CGG | + | chr5_2:62895572-62895591 | Msa0780810:CDS | 40.0% |
| !! | ATTTCAGAGGTATCACATCG+TGG | + | chr5_2:62896000-62896019 | Msa0780810:intron | 40.0% |
| !! | TTTCAGAGGTATCACATCGT+GGG | + | chr5_2:62896001-62896020 | Msa0780810:intron | 40.0% |
| TGTGTGTGTGGTCCATAATT+TGG | + | chr5_2:62896141-62896160 | Msa0780810:intron | 40.0% | |
| ! | GGAACAAATTTTCTCTCCTG+AGG | + | chr5_2:62896192-62896211 | Msa0780810:intron | 40.0% |
| TTGTGTTAAACACAGACCTC+AGG | - | chr5_2:62896211-62896230 | None:intergenic | 40.0% | |
| GAATGATGTCTTAACTCCCT+TGG | + | chr5_2:62896341-62896360 | Msa0780810:intron | 40.0% | |
| ! | ATGAGGTTTTCATGGAGAAG+AGG | - | chr5_2:62896395-62896414 | None:intergenic | 40.0% |
| AAGAGAAGCAGATGTTACCA+AGG | - | chr5_2:62896432-62896451 | None:intergenic | 40.0% | |
| CACATTGAAAATGCCTCTGA+TGG | - | chr5_2:62896455-62896474 | None:intergenic | 40.0% | |
| CTAACACAGCATACTCAAGT+TGG | - | chr5_2:62896478-62896497 | None:intergenic | 40.0% | |
| GAGTATGCTGTGTTAGAAAG+AGG | + | chr5_2:62896482-62896501 | Msa0780810:intron | 40.0% | |
| !! | CTGTGTTAGAAAGAGGCATT+TGG | + | chr5_2:62896489-62896508 | Msa0780810:intron | 40.0% |
| ! | CCAATAAGCTTTGTGCAGTA+CGG | - | chr5_2:62896543-62896562 | None:intergenic | 40.0% |
| CGTACTGCACAAAGCTTATT+GGG | + | chr5_2:62896541-62896560 | Msa0780810:intron | 40.0% | |
| GATACTTTCAGGCACTTGAT+TGG | + | chr5_2:62896858-62896877 | Msa0780810:intron | 40.0% | |
| AAAGGAATTGCTTTGCTCTG+AGG | - | chr5_2:62896905-62896924 | None:intergenic | 40.0% | |
| GCATTGTCTTCACCATGAAA+AGG | - | chr5_2:62896923-62896942 | None:intergenic | 40.0% | |
| GCAATCTGTTTGAAAGTTGG+CGG | + | chr5_2:62896983-62897002 | Msa0780810:CDS | 40.0% | |
| CAATCTGTTTGAAAGTTGGC+GGG | + | chr5_2:62896984-62897003 | Msa0780810:CDS | 40.0% | |
| ! | AGAAGTAAGGTACTAGACTC+GGG | - | chr5_2:62897013-62897032 | None:intergenic | 40.0% |
| ! | GAGAAGTAAGGTACTAGACT+CGG | - | chr5_2:62897014-62897033 | None:intergenic | 40.0% |
| GTCTAGTACCTTACTTCTCA+AGG | + | chr5_2:62897015-62897034 | Msa0780810:CDS | 40.0% | |
| ! | ACGTTTTCCCTTGAGAAGTA+AGG | - | chr5_2:62897026-62897045 | None:intergenic | 40.0% |
| CAGACAAGTGTGTAAGACAT+TGG | - | chr5_2:62897089-62897108 | None:intergenic | 40.0% | |
| ATCGTATCTTAGATCCCATC+TGG | + | chr5_2:62897151-62897170 | Msa0780810:intron | 40.0% | |
| ATCTTAGATCCCATCTGGTT+TGG | + | chr5_2:62897156-62897175 | Msa0780810:intron | 40.0% | |
| TTTGGCATGTGGAAGTTCTT+TGG | + | chr5_2:62897257-62897276 | Msa0780810:intron | 40.0% | |
| ! | GCTTTTACTAGTCCAAAGAG+AGG | + | chr5_2:62897328-62897347 | Msa0780810:intron | 40.0% |
| TTTGCAGGGCTATAAATCAC+AGG | + | chr5_2:62897407-62897426 | Msa0780810:intron | 40.0% | |
| ! | CGGAAAAAGTATAATCCTGG+AGG | - | chr5_2:62897536-62897555 | None:intergenic | 40.0% |
| ! | AACGTGATGTATTGGTCTAG+TGG | + | chr5_2:62897723-62897742 | Msa0780810:intron | 40.0% |
| CGGATCTGGAAGGAAATTAT+CGG | - | chr5_2:62898153-62898172 | None:intergenic | 40.0% | |
| ! | AGAGCTGGTCTACAAGATAT+TGG | + | chr5_2:62898202-62898221 | Msa0780810:intron | 40.0% |
| CTCCCAAGAAACCGATTAAA+AGG | + | chr5_2:62898340-62898359 | Msa0780810:CDS | 40.0% | |
| ! | AGACACAACTTCTGAAGAGA+AGG | - | chr5_2:62898397-62898416 | None:intergenic | 40.0% |
| ! | TCCCACCATAGATCATGTTT+TGG | + | chr5_2:62898491-62898510 | Msa0780810:CDS | 40.0% |
| GCCAAAACATGATCTATGGT+GGG | - | chr5_2:62898495-62898514 | None:intergenic | 40.0% | |
| AGCCAAAACATGATCTATGG+TGG | - | chr5_2:62898496-62898515 | None:intergenic | 40.0% | |
| TCTTCATAGGATTGAAGCTC+GGG | + | chr5_2:62898587-62898606 | Msa0780810:CDS | 40.0% | |
| TCCGATGTAAAGGAGAAATG+TGG | - | chr5_2:62898655-62898674 | None:intergenic | 40.0% | |
| !! | AAAAACCGTGGAAGTGTCTA+GGG | - | chr5_2:62898762-62898781 | None:intergenic | 40.0% |
| ! | TTTTTGTACTGCACTGCTGA+TGG | + | chr5_2:62898777-62898796 | Msa0780810:intron | 40.0% |
| ! | TTTTGTACTGCACTGCTGAT+GGG | + | chr5_2:62898778-62898797 | Msa0780810:intron | 40.0% |
| TCCATCCTTTAATTCAGCTG+GGG | + | chr5_2:62898851-62898870 | Msa0780810:intron | 40.0% | |
| AAACACCCCAGCTGAATTAA+AGG | - | chr5_2:62898859-62898878 | None:intergenic | 40.0% | |
| GAGTATGCAATCCCAATACT+TGG | - | chr5_2:62898952-62898971 | None:intergenic | 40.0% | |
| ! | GGCATATTTGCTGCATTAGA+AGG | - | chr5_2:62899048-62899067 | None:intergenic | 40.0% |
| AGTTCATGCAAAACCCTCTT+CGG | - | chr5_2:62899069-62899088 | None:intergenic | 40.0% | |
| CAGAAAGTTCAATTGCTCTC+TGG | + | chr5_2:62899186-62899205 | Msa0780810:CDS | 40.0% | |
| !! | CACGCATTGATTCTTCGAAT+TGG | - | chr5_2:62899281-62899300 | None:intergenic | 40.0% |
| TTGTGAGACTGAAGAAACAG+AGG | + | chr5_2:62899368-62899387 | Msa0780810:CDS | 40.0% | |
| AGACTGAAGAAACAGAGGTA+TGG | + | chr5_2:62899373-62899392 | Msa0780810:CDS | 40.0% | |
| ! | GACTGAAGAAACAGAGGTAT+GGG | + | chr5_2:62899374-62899393 | Msa0780810:CDS | 40.0% |
| GCAACATACCAATTGGACAT+GGG | - | chr5_2:62899419-62899438 | None:intergenic | 40.0% | |
| CATCAGAAAGGAAAGGGAAT+TGG | + | chr5_2:62899508-62899527 | Msa0780810:CDS | 40.0% | |
| GAGTAGCTGAATATCTGAAG+GGG | - | chr5_2:62899565-62899584 | None:intergenic | 40.0% | |
| CGAGTAGCTGAATATCTGAA+GGG | - | chr5_2:62899566-62899585 | None:intergenic | 40.0% | |
| TCGAGTAGCTGAATATCTGA+AGG | - | chr5_2:62899567-62899586 | None:intergenic | 40.0% | |
| ATGAGGGAGACTGAAGAATT+TGG | + | chr5_2:62899606-62899625 | Msa0780810:CDS | 40.0% | |
| GGAGATTTATCCTCTTCCAT+TGG | - | chr5_2:62899651-62899670 | None:intergenic | 40.0% | |
| GGAAGAGGATAAATCTCCAA+CGG | + | chr5_2:62899653-62899672 | Msa0780810:CDS | 40.0% | |
| GATAAATCTCCAACGGAAGA+GGG | + | chr5_2:62899660-62899679 | Msa0780810:CDS | 40.0% | |
| ATAAATCTCCAACGGAAGAG+GGG | + | chr5_2:62899661-62899680 | Msa0780810:CDS | 40.0% | |
| AAAGGATACCTTATGGTAGG+TGG | + | chr5_2:62899684-62899703 | Msa0780810:CDS | 40.0% | |
| AAGGATACCTTATGGTAGGT+GGG | + | chr5_2:62899685-62899704 | Msa0780810:CDS | 40.0% | |
| GATTTGGAAGAAAGTAACGG+AGG | + | chr5_2:62899707-62899726 | Msa0780810:CDS | 40.0% | |
| !! | GATACCTATATAGAGGTGTC+CGG | + | chr5_2:62899874-62899893 | Msa0780810:three_prime_UTR | 40.0% |
| AATGTATAACTCAACCAGGC+CGG | - | chr5_2:62899896-62899915 | None:intergenic | 40.0% | |
| ATACGAGCAAGCTTGAGAGA+TGG | - | chr5_2:62896030-62896049 | None:intergenic | 45.0% | |
| TGTAAGCAAGTGTGTGTGTG+TGG | + | chr5_2:62896129-62896148 | Msa0780810:intron | 45.0% | |
| TGATGTCTTAACTCCCTTGG+TGG | + | chr5_2:62896344-62896363 | Msa0780810:intron | 45.0% | |
| ATCTGCTTCTCTTCCATCAG+AGG | + | chr5_2:62896439-62896458 | Msa0780810:intron | 45.0% | |
| CCGTACTGCACAAAGCTTAT+TGG | + | chr5_2:62896540-62896559 | Msa0780810:intron | 45.0% | |
| ATGGGATGACCAAACCAGAT+GGG | - | chr5_2:62897168-62897187 | None:intergenic | 45.0% | |
| TTTGGTCATCCCATCTGGTT+TGG | + | chr5_2:62897174-62897193 | Msa0780810:intron | 45.0% | |
| CAAACCAGACCAAACCAGAT+GGG | - | chr5_2:62897186-62897205 | None:intergenic | 45.0% | |
| TACTAGTCCAAAGAGAGGGT+AGG | + | chr5_2:62897333-62897352 | Msa0780810:intron | 45.0% | |
| GTTCTATCATGCTTAGAGGC+TGG | + | chr5_2:62897467-62897486 | Msa0780810:intron | 45.0% | |
| CTGGAAGGAAATTATCGGTG+TGG | - | chr5_2:62898148-62898167 | None:intergenic | 45.0% | |
| AATAACCCAATACTCAGGGG+CGG | - | chr5_2:62898173-62898192 | None:intergenic | 45.0% | |
| ! | CACAACTTCTGAAGAGAAGG+AGG | - | chr5_2:62898394-62898413 | None:intergenic | 45.0% |
| AGAAGTTGTGTCTGTGCTGT+TGG | + | chr5_2:62898404-62898423 | Msa0780810:CDS | 45.0% | |
| AAAACGGGTGATGCTTCTGT+TGG | + | chr5_2:62898468-62898487 | Msa0780810:CDS | 45.0% | |
| GCTTAATTGTTGTGGGTGCT+TGG | + | chr5_2:62898686-62898705 | Msa0780810:intron | 45.0% | |
| TTAAGCCCTAGACACTTCCA+CGG | + | chr5_2:62898754-62898773 | Msa0780810:intron | 45.0% | |
| !! | CAAAAACCGTGGAAGTGTCT+AGG | - | chr5_2:62898763-62898782 | None:intergenic | 45.0% |
| ACCCCAGCTGAATTAAAGGA+TGG | - | chr5_2:62898855-62898874 | None:intergenic | 45.0% | |
| !! | GCATGGCTTGTTCGAATTCT+TGG | + | chr5_2:62899015-62899034 | Msa0780810:CDS | 45.0% |
| ATGCAGCAAATATGCCGAAG+AGG | + | chr5_2:62899052-62899071 | Msa0780810:CDS | 45.0% | |
| TGCAGCAAATATGCCGAAGA+GGG | + | chr5_2:62899053-62899072 | Msa0780810:CDS | 45.0% | |
| TCATGGAACCCATGTCCAAT+TGG | + | chr5_2:62899408-62899427 | Msa0780810:CDS | 45.0% | |
| GGCAACATACCAATTGGACA+TGG | - | chr5_2:62899420-62899439 | None:intergenic | 45.0% | |
| GTCCAATTGGTATGTTGCCT+CGG | + | chr5_2:62899421-62899440 | Msa0780810:CDS | 45.0% | |
| TCCAATTGGTATGTTGCCTC+GGG | + | chr5_2:62899422-62899441 | Msa0780810:CDS | 45.0% | |
| CGATAACATGAAGAACGGGA+AGG | - | chr5_2:62899467-62899486 | None:intergenic | 45.0% | |
| CGATGAATCTCCAATGGAAG+AGG | + | chr5_2:62899638-62899657 | Msa0780810:CDS | 45.0% | |
| GGATAAATCTCCAACGGAAG+AGG | + | chr5_2:62899659-62899678 | Msa0780810:CDS | 45.0% | |
| AGAGGGGAAAGGATACCTTA+TGG | + | chr5_2:62899677-62899696 | Msa0780810:CDS | 45.0% | |
| GGGAAAGGATACCTTATGGT+AGG | + | chr5_2:62899681-62899700 | Msa0780810:CDS | 45.0% | |
| ACCTTATGGTAGGTGGGATT+TGG | + | chr5_2:62899691-62899710 | Msa0780810:CDS | 45.0% | |
| TCCAAATCCCACCTACCATA+AGG | - | chr5_2:62899695-62899714 | None:intergenic | 45.0% | |
| !! | AATATGAAAAAAAAAAAATA+GGG | - | chr5_2:62897655-62897674 | None:intergenic | 5.0% |
| !! | AAATATGAAAAAAAAAAAAT+AGG | - | chr5_2:62897656-62897675 | None:intergenic | 5.0% |
| CGAAGAATGCTGAGAAGTCG+CGG | + | chr5_2:62895495-62895514 | Msa0780810:CDS | 50.0% | |
| TATCAACCAGCATGCGTGGA+AGG | - | chr5_2:62895565-62895584 | None:intergenic | 50.0% | |
| CGAATATCAACCAGCATGCG+TGG | - | chr5_2:62895569-62895588 | None:intergenic | 50.0% | |
| GGATATACCACAGCCACCAA+GGG | - | chr5_2:62896360-62896379 | None:intergenic | 50.0% | |
| AGGATATACCACAGCCACCA+AGG | - | chr5_2:62896361-62896380 | None:intergenic | 50.0% | |
| GGGAATCAGCCACATTCATG+TGG | + | chr5_2:62896725-62896744 | Msa0780810:intron | 50.0% | |
| GATGGGATGACCAAACCAGA+TGG | - | chr5_2:62897169-62897188 | None:intergenic | 50.0% | |
| !! | TCTGGTTTGGTCATCCCATC+TGG | + | chr5_2:62897169-62897188 | Msa0780810:intron | 50.0% |
| !! | TCATCCCATCTGGTTTGGTC+TGG | + | chr5_2:62897179-62897198 | Msa0780810:intron | 50.0% |
| CCAAACCAGACCAAACCAGA+TGG | - | chr5_2:62897187-62897206 | None:intergenic | 50.0% | |
| !! | CCATCTGGTTTGGTCTGGTT+TGG | + | chr5_2:62897184-62897203 | Msa0780810:intron | 50.0% |
| AAACAGGCCTACCCTCTCTT+TGG | - | chr5_2:62897343-62897362 | None:intergenic | 50.0% | |
| CTTTGAATTCTCGGTCCTCC+AGG | + | chr5_2:62897518-62897537 | Msa0780810:intron | 50.0% | |
| !! | AAAATAGGGCTGGACTGGTG+TGG | - | chr5_2:62897641-62897660 | None:intergenic | 50.0% |
| GCAGTGCAGTACAAAAACCG+TGG | - | chr5_2:62898774-62898793 | None:intergenic | 50.0% | |
| ATCACATCTCTGCGACAAGC+AGG | + | chr5_2:62899110-62899129 | Msa0780810:CDS | 50.0% | |
| ! | AGAAACAGAGGTATGGGCTC+TGG | + | chr5_2:62899380-62899399 | Msa0780810:CDS | 50.0% |
| ! | TATGGGCTCTGGCAAAGTCA+TGG | + | chr5_2:62899391-62899410 | Msa0780810:CDS | 50.0% |
| ACCCGAGGCAACATACCAAT+TGG | - | chr5_2:62899426-62899445 | None:intergenic | 50.0% | |
| TATCCTTTCCCCTCTTCCGT+TGG | - | chr5_2:62899672-62899691 | None:intergenic | 50.0% | |
| GCTAAGTGAAGCTAAGCAGC+AGG | - | chr5_2:62899783-62899802 | None:intergenic | 50.0% | |
| AAAAGGCCTTCCACGCATGC+TGG | + | chr5_2:62895556-62895575 | Msa0780810:CDS | 55.0% | |
| ! | CTTAACTCCCTTGGTGGCTG+TGG | + | chr5_2:62896350-62896369 | Msa0780810:intron | 55.0% |
| CAGATCCGCCCCTGAGTATT+GGG | + | chr5_2:62898165-62898184 | Msa0780810:intron | 55.0% | |
| TCTCTGCGACAAGCAGGTCA+TGG | + | chr5_2:62899116-62899135 | Msa0780810:CDS | 55.0% | |
| ! | GGTATGTTGCCTCGGGTTGT+TGG | + | chr5_2:62899429-62899448 | Msa0780810:CDS | 55.0% |
| CCAGATGAACCAACAACCCG+AGG | - | chr5_2:62899441-62899460 | None:intergenic | 55.0% | |
| !! | CCTCGGGTTGTTGGTTCATC+TGG | + | chr5_2:62899438-62899457 | Msa0780810:CDS | 55.0% |
| !! | ATCTGAAGGGGCATCTCGCT+TGG | - | chr5_2:62899553-62899572 | None:intergenic | 55.0% |
| TCTCCAACGGAAGAGGGGAA+AGG | + | chr5_2:62899666-62899685 | Msa0780810:CDS | 55.0% | |
| CAGGCCGGACACCTCTATAT+AGG | - | chr5_2:62899881-62899900 | None:intergenic | 55.0% | |
| !! | CTATATAGAGGTGTCCGGCC+TGG | + | chr5_2:62899879-62899898 | Msa0780810:three_prime_UTR | 55.0% |
| ! | GACCTGCTTTAGGCTGGCTG+TGG | + | chr5_2:62897609-62897628 | Msa0780810:intron | 60.0% |
| AGCCACAGCCAGCCTAAAGC+AGG | - | chr5_2:62897614-62897633 | None:intergenic | 60.0% | |
| TACTCAGGGGCGGATCTGGA+AGG | - | chr5_2:62898163-62898182 | None:intergenic | 60.0% | |
| CCAATACTCAGGGGCGGATC+TGG | - | chr5_2:62898167-62898186 | None:intergenic | 60.0% | |
| CCAGATCCGCCCCTGAGTAT+TGG | + | chr5_2:62898164-62898183 | Msa0780810:intron | 60.0% | |
| GCGGCGGCTGCTGACGAAAA+AGG | + | chr5_2:62895539-62895558 | Msa0780810:CDS | 65.0% | |
| GGCAGGGGCAGACCTGCTTT+AGG | + | chr5_2:62897599-62897618 | Msa0780810:intron | 65.0% | |
| ! | GGGGCAGACCTGCTTTAGGC+TGG | + | chr5_2:62897603-62897622 | Msa0780810:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 62895494 | 62899982 | 62895494 | ID=Msa0780810;Name=Msa0780810 |
| chr5_2 | mRNA | 62895494 | 62899982 | 62895494 | ID=Msa0780810-mRNA-1;Parent=Msa0780810;Name=Msa0780810-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.8|1|1|1|5|209|483 |
| chr5_2 | exon | 62895494 | 62895593 | 62895494 | ID=Msa0780810-mRNA-1:exon:18650;Parent=Msa0780810-mRNA-1 |
| chr5_2 | exon | 62896007 | 62896062 | 62896007 | ID=Msa0780810-mRNA-1:exon:18651;Parent=Msa0780810-mRNA-1 |
| chr5_2 | exon | 62896869 | 62897043 | 62896869 | ID=Msa0780810-mRNA-1:exon:18652;Parent=Msa0780810-mRNA-1 |
| chr5_2 | exon | 62898340 | 62898630 | 62898340 | ID=Msa0780810-mRNA-1:exon:18653;Parent=Msa0780810-mRNA-1 |
| chr5_2 | exon | 62898944 | 62899982 | 62898944 | ID=Msa0780810-mRNA-1:exon:18654;Parent=Msa0780810-mRNA-1 |
| chr5_2 | CDS | 62895494 | 62895593 | 62895494 | ID=Msa0780810-mRNA-1:cds;Parent=Msa0780810-mRNA-1 |
| chr5_2 | CDS | 62896007 | 62896062 | 62896007 | ID=Msa0780810-mRNA-1:cds;Parent=Msa0780810-mRNA-1 |
| chr5_2 | CDS | 62896869 | 62897043 | 62896869 | ID=Msa0780810-mRNA-1:cds;Parent=Msa0780810-mRNA-1 |
| chr5_2 | CDS | 62898340 | 62898630 | 62898340 | ID=Msa0780810-mRNA-1:cds;Parent=Msa0780810-mRNA-1 |
| chr5_2 | CDS | 62898944 | 62899773 | 62898944 | ID=Msa0780810-mRNA-1:cds;Parent=Msa0780810-mRNA-1 |
| chr5_2 | three_prime_UTR | 62899774 | 62899982 | 62899774 | ID=Msa0780810-mRNA-1:three_prime_utr;Parent=Msa0780810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
