AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0643560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0643560 MtrunA17_Chr4g0030391 93.867 375 9 2 1 361 1026 1400 0.0 688
Msa0643560 MtrunA17_Chr4g0030401 88.000 375 31 2 1 361 1030 1404 0.0 649
Msa0643560 MtrunA17_Chr5g0406121 31.234 381 206 7 13 337 1079 1459 1.92e-46 169
Msa0643560 MtrunA17_Chr4g0044991 35.000 120 77 1 227 346 1509 1627 5.42e-18 85.9
Msa0643560 MtrunA17_Chr4g0044991 41.053 95 55 1 12 105 1111 1205 5.19e-16 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0643560 AT5G60040.1 53.425 365 152 6 9 359 1016 1376 9.98e-108 344
Msa0643560 AT5G60040.2 51.233 365 158 6 9 359 1033 1391 6.49e-101 325
Msa0643560 AT4G35800.2 31.620 389 200 7 14 341 1081 1464 3.05e-50 181
Msa0643560 AT4G35800.1 31.620 389 200 7 14 341 1081 1464 3.05e-50 181
Msa0643560 AT3G57660.1 31.073 177 114 3 171 346 1500 1669 5.71e-18 86.3
Msa0643560 AT3G57660.1 43.158 95 53 1 12 105 1153 1247 3.29e-17 84.0
Msa0643560 AT3G57660.2 31.073 177 114 3 171 346 1487 1656 6.91e-18 85.9
Msa0643560 AT3G57660.2 43.158 95 53 1 12 105 1140 1234 3.48e-17 84.0

Find 92 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTCCCATAACCTCTTTA+AGG 0.098712 4_3:+46601976 None:intergenic
TAATATTACATTGCCATATT+TGG 0.142955 4_3:-46600441 Msa0643560:three_prime_UTR
TTTGCAGAATGTTAAGATTT+TGG 0.161242 4_3:-46602935 Msa0643560:intron
TCTATAGTAAATTGTATATT+TGG 0.200325 4_3:-46600363 Msa0643560:three_prime_UTR
AATTGATTCTTTCACAATAT+TGG 0.204750 4_3:+46603072 None:intergenic
CATTGAACTGATGCACATTC+TGG 0.222910 4_3:-46601916 Msa0643560:CDS
TGAGATTATTAAGTTGAAAA+AGG 0.235822 4_3:+46602863 None:intergenic
CGCATCATAGAAATAATAAA+TGG 0.278334 4_3:-46604675 Msa0643560:CDS
ATGAAGTGCAAGACCAAATA+TGG 0.300484 4_3:+46600428 None:intergenic
CAAGGGCCTTAAAGAGGTTA+TGG 0.327752 4_3:-46601982 Msa0643560:CDS
TTCACTTCGGCTAGACCCTT+GGG 0.332446 4_3:+46602888 None:intergenic
GGAACTCCAATTGGTGCAAT+TGG 0.343575 4_3:-46604917 Msa0643560:CDS
AATGATCGGTGTCTTAATAT+TGG 0.345118 4_3:+46604647 None:intergenic
GAGCCAAGCCTATTCTATCT+AGG 0.353081 4_3:-46600609 Msa0643560:CDS
CAATCACTCACTCCTTCAAT+TGG 0.356642 4_3:+46601544 None:intergenic
ATGGGAATTGAAGGGGTTGA+TGG 0.366001 4_3:-46601963 Msa0643560:CDS
CTTTCTTAGGTTGGAACCTC+CGG 0.370839 4_3:-46600644 Msa0643560:intron
ATTCCAGTGCCTATATGAAT+AGG 0.375180 4_3:+46601505 None:intergenic
CTGATCTATGATACCATATC+TGG 0.377324 4_3:+46601881 None:intergenic
GAACCTCCGGTGTTGCTTCA+AGG 0.395277 4_3:-46600631 Msa0643560:CDS
TAGCAGATATGATGACTGTC+AGG 0.404647 4_3:-46601800 Msa0643560:CDS
TATCTGCTAGAAGCATAATA+TGG 0.411824 4_3:+46601814 None:intergenic
CGATGCATCCTTGCGTGGGA+AGG 0.413910 4_3:-46601572 Msa0643560:CDS
GGAATTGAGGCTGCCAGATA+TGG 0.414804 4_3:-46601894 Msa0643560:CDS
TCAAACTAGGGTCAAGTCCT+TGG 0.415181 4_3:-46601676 Msa0643560:intron
ATCTGAGAAGTACACATTAC+TGG 0.415625 4_3:-46602632 Msa0643560:CDS
AGACCCTGACTAACATTTCA+TGG 0.416185 4_3:-46600466 Msa0643560:three_prime_UTR
GTTCACTTCGGCTAGACCCT+TGG 0.417101 4_3:+46602887 None:intergenic
TACCCCATGAAATGTTAGTC+AGG 0.421471 4_3:+46600462 None:intergenic
TAGTCAGGGTCTGCACCTCT+TGG 0.436620 4_3:+46600477 None:intergenic
CTTCAAACCCTAGATAGAAT+AGG 0.436751 4_3:+46600601 None:intergenic
GAGGTTGTAGAATTTACTCT+TGG 0.437050 4_3:-46600516 Msa0643560:three_prime_UTR
ATGGGTAAACCTATTCATAT+AGG 0.444116 4_3:-46601514 Msa0643560:CDS
AAAGAGGTTATGGGAATTGA+AGG 0.446806 4_3:-46601972 Msa0643560:CDS
TGAGCTCCAATTGCACCAAT+TGG 0.449787 4_3:+46604911 None:intergenic
CTGTTATTAGATGTTACACT+TGG 0.454857 4_3:-46604705 Msa0643560:intron
ATTGAACTGATGCACATTCT+GGG 0.456174 4_3:-46601915 Msa0643560:CDS
AGTGAGTGATTGCATAATCA+TGG 0.458045 4_3:-46601533 Msa0643560:CDS
TTCAAAGTCATCTGAGTCCC+AGG 0.463634 4_3:+46604875 None:intergenic
AGTCAGGGTCTGCACCTCTT+GGG 0.463787 4_3:+46600478 None:intergenic
AATGAGGCTGGAACTCCAAT+TGG 0.466178 4_3:-46604926 Msa0643560:CDS
AAGGGCCTTAAAGAGGTTAT+GGG 0.475016 4_3:-46601981 Msa0643560:CDS
GCTCATAGTATTGGAGAACC+TGG 0.500736 4_3:-46604893 Msa0643560:CDS
AAGAGGTTATGGGAATTGAA+GGG 0.505086 4_3:-46601971 Msa0643560:CDS
AGCCAAGCCTATTCTATCTA+GGG 0.509895 4_3:-46600608 Msa0643560:CDS
AAGACATGGAATTCAAAAGA+TGG 0.509948 4_3:-46601647 Msa0643560:CDS
CATCAGCAAGGGCCTTAAAG+AGG 0.511065 4_3:-46601988 Msa0643560:intron
AACCCTAGATAGAATAGGCT+TGG 0.512637 4_3:+46600606 None:intergenic
GCAATTGGAGCTCATAGTAT+TGG 0.512888 4_3:-46604902 Msa0643560:CDS
TTCCATGTCTTGTCATTCCA+AGG 0.514932 4_3:+46601659 None:intergenic
GGACATGGGCATAATTGAAA+AGG 0.515183 4_3:-46603113 Msa0643560:CDS
AAACCTATTCATATAGGCAC+TGG 0.516311 4_3:-46601508 Msa0643560:CDS
GACCCTGACTAACATTTCAT+GGG 0.517007 4_3:-46600465 Msa0643560:three_prime_UTR
TTCAATGATATGATTAGTAA+CGG 0.524631 4_3:+46601932 None:intergenic
GGGAAGGGTGACCCAATTGA+AGG 0.525487 4_3:-46601556 Msa0643560:CDS
GCTTCCATCGGTTGTAGTGA+AGG 0.526606 4_3:-46602833 Msa0643560:intron
AGAGGTTATGGGAATTGAAG+GGG 0.537047 4_3:-46601970 Msa0643560:CDS
AATCACTCACTCCTTCAATT+GGG 0.539564 4_3:+46601545 None:intergenic
GATGCATCCTTGCGTGGGAA+GGG 0.543229 4_3:-46601571 Msa0643560:CDS
TTGGCTCCTTGAAGCAACAC+CGG 0.561174 4_3:+46600625 None:intergenic
GATGCACATTCTGGGAATTG+AGG 0.567345 4_3:-46601907 Msa0643560:CDS
AATACTATCAAACACGACAT+TGG 0.572949 4_3:+46600396 None:intergenic
ACTATCAAACACGACATTGG+TGG 0.581040 4_3:+46600399 None:intergenic
ACCCCATGAAATGTTAGTCA+GGG 0.582180 4_3:+46600463 None:intergenic
AGACATGGAATTCAAAAGAT+GGG 0.582691 4_3:-46601646 Msa0643560:CDS
GTGAGTGATTGCATAATCAT+GGG 0.585359 4_3:-46601532 Msa0643560:CDS
GTCCTTGGAATGACAAGACA+TGG 0.589188 4_3:-46601661 Msa0643560:CDS
TGGGTCACCCTTCCCACGCA+AGG 0.590838 4_3:+46601564 None:intergenic
AAGTACACATTACTGGCGGA+AGG 0.592200 4_3:-46602625 Msa0643560:CDS
GTATATTAGCAGCAAGAATG+TGG 0.593973 4_3:-46600576 Msa0643560:three_prime_UTR
TCAAGTATTGCAGTAATGAT+CGG 0.594138 4_3:+46604633 None:intergenic
CATTACTGCAATACTTGAGA+GGG 0.596964 4_3:-46604628 Msa0643560:CDS
ATGGGCATAATTGAAAAGGC+AGG 0.601114 4_3:-46603109 Msa0643560:CDS
AAAACTGCAAAGATAGTGAA+GGG 0.601570 4_3:-46604594 Msa0643560:CDS
TTTATTATTTCTATGATGCG+AGG 0.606008 4_3:+46604678 None:intergenic
AAGCTTCAAGTGGAACCCCA+AGG 0.610926 4_3:-46602904 Msa0643560:CDS
TCATTACTGCAATACTTGAG+AGG 0.612926 4_3:-46604629 Msa0643560:CDS
AGCTTCAAGTGGAACCCCAA+GGG 0.615564 4_3:-46602903 Msa0643560:CDS
TCACTTCGGCTAGACCCTTG+GGG 0.622915 4_3:+46602889 None:intergenic
AGAATGTGGATTATACATGA+AGG 0.627558 4_3:-46600562 Msa0643560:three_prime_UTR
CTCATAGTATTGGAGAACCT+GGG 0.631808 4_3:-46604892 Msa0643560:CDS
TCTGATAATATTTGCCCAAG+AGG 0.632156 4_3:-46600492 Msa0643560:three_prime_UTR
CAGTATACAATGAAACAGCA+TGG 0.633424 4_3:-46601855 Msa0643560:CDS
GCTCCTTGAAGCAACACCGG+AGG 0.634596 4_3:+46600628 None:intergenic
CATACCTTCACTACAACCGA+TGG 0.639841 4_3:+46602829 None:intergenic
AGCAGATATGATGACTGTCA+GGG 0.641689 4_3:-46601799 Msa0643560:intron
AGTACACATTACTGGCGGAA+GGG 0.646891 4_3:-46602624 Msa0643560:intron
AAAACTGAAGTTGAAGCCAG+AGG 0.675074 4_3:-46603038 Msa0643560:intron
TATAGGCACTGGAATGATCG+AGG 0.686172 4_3:-46601497 Msa0643560:CDS
ACCCTGACTAACATTTCATG+GGG 0.695043 4_3:-46600464 Msa0643560:three_prime_UTR
GAATGATCGAGGTCAAACAA+AGG 0.700498 4_3:-46601486 Msa0643560:intron
TGAGAAGTACACATTACTGG+CGG 0.721019 4_3:-46602629 Msa0643560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATAAAAACAAATGA+TGG - chr4_3:46602631-46602650 Msa0643560:CDS 10.0%
!!! TTGTATTATATGATTTTTTA+AGG - chr4_3:46604050-46604069 Msa0643560:intron 10.0%
!!! TTAAATATACCTTTTTTTAA+TGG - chr4_3:46604313-46604332 Msa0643560:intron 10.0%
!!! TTTATTTTTCCATTAAAAAA+AGG + chr4_3:46604325-46604344 None:intergenic 10.0%
!! GTTATTTGAAAATTACTATA+AGG - chr4_3:46603519-46603538 Msa0643560:intron 15.0%
!!! AATTTTCTACATATATTACA+AGG - chr4_3:46604559-46604578 Msa0643560:intron 15.0%
!! TCTATAGTAAATTGTATATT+TGG - chr4_3:46604929-46604948 Msa0643560:CDS 15.0%
!! GTTATCGTTTAAAAAAAATG+AGG - chr4_3:46600350-46600369 Msa0643560:three_prime_UTR 20.0%
!! TAACATCTAATAACAGATTA+AGG + chr4_3:46600583-46600602 None:intergenic 20.0%
!! TGCATAGAAAAAACAAATTT+AGG - chr4_3:46600722-46600741 Msa0643560:intron 20.0%
!! ATATAAATATACTATCAGTG+TGG + chr4_3:46600788-46600807 None:intergenic 20.0%
!! ACAATTAATGATTTATCCAT+GGG - chr4_3:46600987-46601006 Msa0643560:intron 20.0%
!! ACAAATATACATTCTTTACA+TGG + chr4_3:46601391-46601410 None:intergenic 20.0%
!!! ATGATTGATAACTAATCTTT+TGG + chr4_3:46601897-46601916 None:intergenic 20.0%
!!! AATTGATTCTTTCACAATAT+TGG + chr4_3:46602223-46602242 None:intergenic 20.0%
!!! AAAAAAGCTTTGAATATTAG+AGG + chr4_3:46602328-46602347 None:intergenic 20.0%
!!! TGAGATTATTAAGTTGAAAA+AGG + chr4_3:46602432-46602451 None:intergenic 20.0%
!!! CTTTGTATTTTATATTCAGA+TGG - chr4_3:46602544-46602563 Msa0643560:intron 20.0%
!! TCTTTCATAATATAAAGTGA+TGG - chr4_3:46602934-46602953 Msa0643560:intron 20.0%
!! CTTTCATAATATAAAGTGAT+GGG - chr4_3:46602935-46602954 Msa0643560:intron 20.0%
!! TTCACATTAATCTGAATATA+CGG + chr4_3:46602987-46603006 None:intergenic 20.0%
!! ATTAATGTGAAATGAAAATC+AGG - chr4_3:46602996-46603015 Msa0643560:intron 20.0%
!! TTCAATGATATGATTAGTAA+CGG + chr4_3:46603363-46603382 None:intergenic 20.0%
!!! GACTTGTAATTTAAACTTTT+TGG + chr4_3:46603545-46603564 None:intergenic 20.0%
!! TTTATGTGATTTATCAAACT+AGG - chr4_3:46603603-46603622 Msa0643560:intron 20.0%
!! TTATGTGATTTATCAAACTA+GGG - chr4_3:46603604-46603623 Msa0643560:intron 20.0%
!! AAATATTCAAGGCTTAAATT+TGG - chr4_3:46603881-46603900 Msa0643560:intron 20.0%
!!! CATAAGTTTGTTTTTAGATT+TGG - chr4_3:46603916-46603935 Msa0643560:intron 20.0%
!!! TTTTTAGTTTACTTGCTAAT+CGG + chr4_3:46603967-46603986 None:intergenic 20.0%
!!! TTTTAATAGACTACTATATC+AGG + chr4_3:46604103-46604122 None:intergenic 20.0%
!! GATATAGTAGTCTATTAAAA+TGG - chr4_3:46604103-46604122 Msa0643560:intron 20.0%
!!! TTTGATAATATTACATGAAG+TGG - chr4_3:46604181-46604200 Msa0643560:intron 20.0%
!! AATGACTAAAAGAAAAAAAG+TGG + chr4_3:46604450-46604469 None:intergenic 20.0%
!! TACGCATAAAAAATTTATGT+TGG + chr4_3:46604592-46604611 None:intergenic 20.0%
!! TAATATTACATTGCCATATT+TGG - chr4_3:46604851-46604870 Msa0643560:CDS 20.0%
!!! TTTATTATTTCTATGATGCG+AGG + chr4_3:46600617-46600636 None:intergenic 25.0%
! CGCATCATAGAAATAATAAA+TGG - chr4_3:46600617-46600636 Msa0643560:CDS 25.0%
!!! TCATTATGTTTTGTTGTAAC+AGG + chr4_3:46600945-46600964 None:intergenic 25.0%
! CACAATTAATGATTTATCCA+TGG - chr4_3:46600986-46601005 Msa0643560:intron 25.0%
!!! TAGTTTATTTTTCCCACATA+TGG + chr4_3:46601263-46601282 None:intergenic 25.0%
! ATATGTGGGAAAAATAAACT+AGG - chr4_3:46601262-46601281 Msa0643560:intron 25.0%
! TGATACAATCTTAGAATTTG+TGG - chr4_3:46601564-46601583 Msa0643560:CDS 25.0%
! TTGGAATTGTGTTTATAAGT+GGG + chr4_3:46601639-46601658 None:intergenic 25.0%
!! TTTGGAATTGTGTTTATAAG+TGG + chr4_3:46601640-46601659 None:intergenic 25.0%
! ACACAGTTAGAATAATACTT+TGG + chr4_3:46601658-46601677 None:intergenic 25.0%
! GATAACTAAAGATACAATTC+AGG + chr4_3:46601858-46601877 None:intergenic 25.0%
!! ATCTTTTGGTGGAAAAATAA+TGG + chr4_3:46601883-46601902 None:intergenic 25.0%
!!! ATTGATAACTAATCTTTTGG+TGG + chr4_3:46601894-46601913 None:intergenic 25.0%
!! TTGAATATTAGAGGCATAAA+TGG + chr4_3:46602319-46602338 None:intergenic 25.0%
!! TTTGCAGAATGTTAAGATTT+TGG - chr4_3:46602357-46602376 Msa0643560:intron 25.0%
! AAGTACATAACAAAATACAG+AGG + chr4_3:46602703-46602722 None:intergenic 25.0%
!!! TGTACTTTTAATTTCCACTA+TGG - chr4_3:46602716-46602735 Msa0643560:intron 25.0%
! TGTTTCCTTATATACCTTAT+TGG - chr4_3:46602743-46602762 Msa0643560:intron 25.0%
! ATAGTCCAATAAGGTATATA+AGG + chr4_3:46602751-46602770 None:intergenic 25.0%
! TGCAATAATATAGTCCAATA+AGG + chr4_3:46602760-46602779 None:intergenic 25.0%
!!! CATTAGTTTTTCTTGATTGA+GGG - chr4_3:46602778-46602797 Msa0643560:intron 25.0%
! AGTTCTTCTTCATACATATT+TGG + chr4_3:46602908-46602927 None:intergenic 25.0%
! TATTTATCACAAACACACAT+GGG + chr4_3:46603567-46603586 None:intergenic 25.0%
! ATATTTATCACAAACACACA+TGG + chr4_3:46603568-46603587 None:intergenic 25.0%
! ATACAATGTGTATGTTTATG+TGG - chr4_3:46603839-46603858 Msa0643560:intron 25.0%
! ATGTTTATGTGGTTATAGTA+TGG - chr4_3:46603850-46603869 Msa0643560:intron 25.0%
! TGGTCTATTCAAAATATTCA+AGG - chr4_3:46603870-46603889 Msa0643560:intron 25.0%
! TCTAAAAACAAACTTATGAC+AGG + chr4_3:46603914-46603933 None:intergenic 25.0%
!!! TTTTAGTTTACTTGCTAATC+GGG + chr4_3:46603966-46603985 None:intergenic 25.0%
! TATTTGAGTCTTCATGATTA+AGG - chr4_3:46604142-46604161 Msa0643560:intron 25.0%
! ATTTGAGTCTTCATGATTAA+GGG - chr4_3:46604143-46604162 Msa0643560:intron 25.0%
! TGATTAAGGGATATAAAAGT+TGG - chr4_3:46604156-46604175 Msa0643560:intron 25.0%
! GATTAAATGAAATCATTGCA+CGG + chr4_3:46604255-46604274 None:intergenic 25.0%
! AGAAAAGTAGTATACTTACA+TGG + chr4_3:46604385-46604404 None:intergenic 25.0%
! TAGTCATTGTCAAAATTTGT+TGG - chr4_3:46604462-46604481 Msa0643560:intron 25.0%
! AAATGAATGTTACACATGTA+GGG + chr4_3:46604501-46604520 None:intergenic 25.0%
! AAAATGAATGTTACACATGT+AGG + chr4_3:46604502-46604521 None:intergenic 25.0%
!! GTATCATATTTTCATCACAT+CGG - chr4_3:46604609-46604628 Msa0643560:CDS 25.0%
TCGTTTAAAAAAAATGAGGC+TGG - chr4_3:46600354-46600373 Msa0643560:three_prime_UTR 30.0%
! TTGAAAACTTTTCACTTTGC+TGG - chr4_3:46600435-46600454 Msa0643560:three_prime_UTR 30.0%
! TGAAAACTTTTCACTTTGCT+GGG - chr4_3:46600436-46600455 Msa0643560:three_prime_UTR 30.0%
TGAACAACATAGTCAAAGAA+AGG + chr4_3:46600479-46600498 None:intergenic 30.0%
CTGTTATTAGATGTTACACT+TGG - chr4_3:46600587-46600606 Msa0643560:exon 30.0%
! AATGATCGGTGTCTTAATAT+TGG + chr4_3:46600648-46600667 None:intergenic 30.0%
! TCAAGTATTGCAGTAATGAT+CGG + chr4_3:46600662-46600681 None:intergenic 30.0%
AAAAACTGCAAAGATAGTGA+AGG - chr4_3:46600697-46600716 Msa0643560:intron 30.0%
AAAACTGCAAAGATAGTGAA+GGG - chr4_3:46600698-46600717 Msa0643560:intron 30.0%
AGAAAAAACAAATTTAGGCC+AGG - chr4_3:46600727-46600746 Msa0643560:intron 30.0%
!! TATAGAAAGCTTTAGCTTGA+GGG + chr4_3:46600915-46600934 None:intergenic 30.0%
ATAATGATCTTTGACGAGAA+GGG - chr4_3:46600958-46600977 Msa0643560:intron 30.0%
CACAAATATGATCCATATGT+GGG - chr4_3:46601055-46601074 Msa0643560:intron 30.0%
ACCAATGAAATAATCGTTGT+CGG - chr4_3:46601085-46601104 Msa0643560:intron 30.0%
GACTAATATGATCCATATGT+GGG - chr4_3:46601177-46601196 Msa0643560:intron 30.0%
CACTAATATGATCCATATGT+GGG - chr4_3:46601248-46601267 Msa0643560:intron 30.0%
ACAATCTTAGAATTTGTGGT+TGG - chr4_3:46601568-46601587 Msa0643560:CDS 30.0%
CAATCTTAGAATTTGTGGTT+GGG - chr4_3:46601569-46601588 Msa0643560:CDS 30.0%
TGGAATTGTGTTTATAAGTG+GGG + chr4_3:46601638-46601657 None:intergenic 30.0%
TCAAGAATAGACTAGAAGAT+GGG + chr4_3:46602057-46602076 None:intergenic 30.0%
TTCAAGAATAGACTAGAAGA+TGG + chr4_3:46602058-46602077 None:intergenic 30.0%
! AAAGAATCAATTTTGCAGAC+TGG - chr4_3:46602231-46602250 Msa0643560:intron 30.0%
GGATATTAAAAAGCTTCAAG+TGG - chr4_3:46602378-46602397 Msa0643560:intron 30.0%
! TCTCAAAAATTTGCTTCCAT+CGG - chr4_3:46602447-46602466 Msa0643560:intron 30.0%
!!! ACTTCTTTTTTCTTCTTTGC+AGG - chr4_3:46602573-46602592 Msa0643560:intron 30.0%
!!! CTTCTTTTTTCTTCTTTGCA+GGG - chr4_3:46602574-46602593 Msa0643560:intron 30.0%
!!! GCATTAGTTTTTCTTGATTG+AGG - chr4_3:46602777-46602796 Msa0643560:intron 30.0%
! TATTATTGTTGCTTCATCAC+TGG - chr4_3:46602864-46602883 Msa0643560:CDS 30.0%
! TCATAATATAAAGTGATGGG+TGG - chr4_3:46602938-46602957 Msa0643560:intron 30.0%
AATCAGGAATATGATTAGAG+AGG - chr4_3:46603012-46603031 Msa0643560:intron 30.0%
ATTAACAAGCAGCAATATAG+TGG + chr4_3:46603233-46603252 None:intergenic 30.0%
!!! TTCATTTTTTCTCATCAGCA+AGG - chr4_3:46603292-46603311 Msa0643560:intron 30.0%
!!! TCATTTTTTCTCATCAGCAA+GGG - chr4_3:46603293-46603312 Msa0643560:intron 30.0%
! TATCTGCTAGAAGCATAATA+TGG + chr4_3:46603481-46603500 None:intergenic 30.0%
AAGACATGGAATTCAAAAGA+TGG - chr4_3:46603645-46603664 Msa0643560:intron 30.0%
AGACATGGAATTCAAAAGAT+GGG - chr4_3:46603646-46603665 Msa0643560:intron 30.0%
ATGGGTAAACCTATTCATAT+AGG - chr4_3:46603778-46603797 Msa0643560:intron 30.0%
ACAAGAAACATGAGACATAT+AGG - chr4_3:46603998-46604017 Msa0643560:intron 30.0%
! AGAATGTGGATTATACATGA+AGG - chr4_3:46604730-46604749 Msa0643560:intron 30.0%
!!! CATTGAATGTTTTGAGTTTG+AGG - chr4_3:46604757-46604776 Msa0643560:intron 30.0%
AATACTATCAAACACGACAT+TGG + chr4_3:46604899-46604918 None:intergenic 30.0%
! GAAAACTTTTCACTTTGCTG+GGG - chr4_3:46600437-46600456 Msa0643560:three_prime_UTR 35.0%
TCATTACTGCAATACTTGAG+AGG - chr4_3:46600663-46600682 Msa0643560:intron 35.0%
CATTACTGCAATACTTGAGA+GGG - chr4_3:46600664-46600683 Msa0643560:intron 35.0%
!! ATAGAAAGCTTTAGCTTGAG+GGG + chr4_3:46600914-46600933 None:intergenic 35.0%
!! GTATAGAAAGCTTTAGCTTG+AGG + chr4_3:46600916-46600935 None:intergenic 35.0%
CATAATGATCTTTGACGAGA+AGG - chr4_3:46600957-46600976 Msa0643560:intron 35.0%
CCACATATGGATCATATTTG+TGG + chr4_3:46601057-46601076 None:intergenic 35.0%
CCACAAATATGATCCATATG+TGG - chr4_3:46601054-46601073 Msa0643560:intron 35.0%
ACCGACAACGATTATTTCAT+TGG + chr4_3:46601089-46601108 None:intergenic 35.0%
AATGAAATAATCGTTGTCGG+TGG - chr4_3:46601088-46601107 Msa0643560:intron 35.0%
ATGAAATAATCGTTGTCGGT+GGG - chr4_3:46601089-46601108 Msa0643560:intron 35.0%
CCTCTAATATGATCCATATG+CGG - chr4_3:46601123-46601142 Msa0643560:intron 35.0%
CGACTAATATGATCCATATG+TGG - chr4_3:46601176-46601195 Msa0643560:intron 35.0%
CCACATATGGATCATATTAG+TGG + chr4_3:46601179-46601198 None:intergenic 35.0%
CCACTAATATGATCCATATG+TGG - chr4_3:46601247-46601266 Msa0643560:intron 35.0%
AGGAACAAACCAATACTGAT+AGG - chr4_3:46601282-46601301 Msa0643560:intron 35.0%
AACAAACCAATACTGATAGG+TGG - chr4_3:46601285-46601304 Msa0643560:intron 35.0%
TCTTTACATGGTATTAGAGC+TGG + chr4_3:46601379-46601398 None:intergenic 35.0%
TGTGTTAAAGAGTCTCACAT+TGG + chr4_3:46601433-46601452 None:intergenic 35.0%
CAACATGCTTAATGAAAGGA+TGG + chr4_3:46601955-46601974 None:intergenic 35.0%
TCCTTTCATTAAGCATGTTG+AGG - chr4_3:46601955-46601974 Msa0643560:CDS 35.0%
ACCTCAACATGCTTAATGAA+AGG + chr4_3:46601959-46601978 None:intergenic 35.0%
AATTGACATTCCTGCTATGT+TGG + chr4_3:46601983-46602002 None:intergenic 35.0%
CACTTTGTTCCAATCTATAC+AGG - chr4_3:46602099-46602118 Msa0643560:intron 35.0%
GTTGAAAAAGGAGTTCACTT+CGG + chr4_3:46602420-46602439 None:intergenic 35.0%
!!! GATACAGTGTTTGTTTTGTC+TGG - chr4_3:46602521-46602540 Msa0643560:intron 35.0%
! ATCTGAGAAGTACACATTAC+TGG - chr4_3:46602660-46602679 Msa0643560:CDS 35.0%
TAAGGAAACATATGCCATAG+TGG + chr4_3:46602733-46602752 None:intergenic 35.0%
! GTTGTCTGTGTATGCTTTTA+AGG - chr4_3:46603142-46603161 Msa0643560:intron 35.0%
CAATTCCCATAACCTCTTTA+AGG + chr4_3:46603319-46603338 None:intergenic 35.0%
AAAGAGGTTATGGGAATTGA+AGG - chr4_3:46603320-46603339 Msa0643560:intron 35.0%
AAGAGGTTATGGGAATTGAA+GGG - chr4_3:46603321-46603340 Msa0643560:intron 35.0%
ATTGAACTGATGCACATTCT+GGG - chr4_3:46603377-46603396 Msa0643560:intron 35.0%
CTGATCTATGATACCATATC+TGG + chr4_3:46603414-46603433 None:intergenic 35.0%
CAGTATACAATGAAACAGCA+TGG - chr4_3:46603437-46603456 Msa0643560:intron 35.0%
AATCACTCACTCCTTCAATT+GGG + chr4_3:46603750-46603769 None:intergenic 35.0%
AGTGAGTGATTGCATAATCA+TGG - chr4_3:46603759-46603778 Msa0643560:intron 35.0%
GTGAGTGATTGCATAATCAT+GGG - chr4_3:46603760-46603779 Msa0643560:intron 35.0%
AAACCTATTCATATAGGCAC+TGG - chr4_3:46603784-46603803 Msa0643560:intron 35.0%
ATTCCAGTGCCTATATGAAT+AGG + chr4_3:46603790-46603809 None:intergenic 35.0%
!!! GTTTGTTTTTAGATTTGGCC+TGG - chr4_3:46603921-46603940 Msa0643560:intron 35.0%
ATACCAAACATTCAATGACC+AGG + chr4_3:46603942-46603961 None:intergenic 35.0%
! AAAATGGTTAGTCCTTGACA+TGG - chr4_3:46604119-46604138 Msa0643560:intron 35.0%
AAGACTCAAATACCATGTCA+AGG + chr4_3:46604134-46604153 None:intergenic 35.0%
TTCAAAATTCACGCAAGTGT+TGG + chr4_3:46604277-46604296 None:intergenic 35.0%
AGTTCTTATGTAGCTCGTAT+TGG - chr4_3:46604522-46604541 Msa0643560:intron 35.0%
CTTCAAACCCTAGATAGAAT+AGG + chr4_3:46604694-46604713 None:intergenic 35.0%
GTATATTAGCAGCAAGAATG+TGG - chr4_3:46604716-46604735 Msa0643560:intron 35.0%
GAGGTTGTAGAATTTACTCT+TGG - chr4_3:46604776-46604795 Msa0643560:intron 35.0%
TCTGATAATATTTGCCCAAG+AGG - chr4_3:46604800-46604819 Msa0643560:intron 35.0%
ATGAAGTGCAAGACCAAATA+TGG + chr4_3:46604867-46604886 None:intergenic 35.0%
GCAATTGGAGCTCATAGTAT+TGG - chr4_3:46600390-46600409 Msa0643560:three_prime_UTR 40.0%
! CTCATAGTATTGGAGAACCT+GGG - chr4_3:46600400-46600419 Msa0643560:three_prime_UTR 40.0%
! CCAAATGCTTGCTGGAATTT+CGG - chr4_3:46600521-46600540 Msa0643560:three_prime_UTR 40.0%
GCATTCTGTTGCACATTGAT+TGG - chr4_3:46600543-46600562 Msa0643560:three_prime_UTR 40.0%
CACTCATACAACTACATACC+TGG + chr4_3:46600748-46600767 None:intergenic 40.0%
CAGGTATGTAGTTGTATGAG+TGG - chr4_3:46600746-46600765 Msa0643560:intron 40.0%
CCGCATATGGATCATATTAG+AGG + chr4_3:46601126-46601145 None:intergenic 40.0%
ACCTTCGGATTGATCATCAT+CGG - chr4_3:46601209-46601228 Msa0643560:intron 40.0%
GATATCCATTCAGCATCTTG+AGG + chr4_3:46601807-46601826 None:intergenic 40.0%
AGAATAGACTAGAAGATGGG+TGG + chr4_3:46602054-46602073 None:intergenic 40.0%
TCTTCGCAACCTGTATAGAT+TGG + chr4_3:46602111-46602130 None:intergenic 40.0%
! AGTTTTTATCTCGCTGGACA+TGG - chr4_3:46602164-46602183 Msa0643560:intron 40.0%
! GTTTTTATCTCGCTGGACAT+GGG - chr4_3:46602165-46602184 Msa0643560:intron 40.0%
GGACATGGGCATAATTGAAA+AGG - chr4_3:46602179-46602198 Msa0643560:intron 40.0%
ATGGGCATAATTGAAAAGGC+AGG - chr4_3:46602183-46602202 Msa0643560:intron 40.0%
AAAACTGAAGTTGAAGCCAG+AGG - chr4_3:46602254-46602273 Msa0643560:intron 40.0%
! TGAGAAGTACACATTACTGG+CGG - chr4_3:46602663-46602682 Msa0643560:CDS 40.0%
CACACTTCTGCATTCTTTAG+GGG + chr4_3:46602815-46602834 None:intergenic 40.0%
GCACACTTCTGCATTCTTTA+GGG + chr4_3:46602816-46602835 None:intergenic 40.0%
AGCACACTTCTGCATTCTTT+AGG + chr4_3:46602817-46602836 None:intergenic 40.0%
! GTCCCGTCATGTTTTTCTTT+GGG + chr4_3:46603054-46603073 None:intergenic 40.0%
! TGTCCCGTCATGTTTTTCTT+TGG + chr4_3:46603055-46603074 None:intergenic 40.0%
AAGGGCCTTAAAGAGGTTAT+GGG - chr4_3:46603311-46603330 Msa0643560:intron 40.0%
AGAGGTTATGGGAATTGAAG+GGG - chr4_3:46603322-46603341 Msa0643560:intron 40.0%
CATTGAACTGATGCACATTC+TGG - chr4_3:46603376-46603395 Msa0643560:intron 40.0%
TAGCAGATATGATGACTGTC+AGG - chr4_3:46603492-46603511 Msa0643560:intron 40.0%
AGCAGATATGATGACTGTCA+GGG - chr4_3:46603493-46603512 Msa0643560:intron 40.0%
TTCCATGTCTTGTCATTCCA+AGG + chr4_3:46603636-46603655 None:intergenic 40.0%
CAATCACTCACTCCTTCAAT+TGG + chr4_3:46603751-46603770 None:intergenic 40.0%
GAATGATCGAGGTCAAACAA+AGG - chr4_3:46603806-46603825 Msa0643560:intron 40.0%
TTAGCTAACCCCTCTTTCTT+AGG - chr4_3:46604635-46604654 Msa0643560:CDS 40.0%
AGGTTCCAACCTAAGAAAGA+GGG + chr4_3:46604647-46604666 None:intergenic 40.0%
AGCCAAGCCTATTCTATCTA+GGG - chr4_3:46604684-46604703 Msa0643560:CDS 40.0%
AACCCTAGATAGAATAGGCT+TGG + chr4_3:46604689-46604708 None:intergenic 40.0%
AGACCCTGACTAACATTTCA+TGG - chr4_3:46604826-46604845 Msa0643560:intron 40.0%
GACCCTGACTAACATTTCAT+GGG - chr4_3:46604827-46604846 Msa0643560:intron 40.0%
ACCCTGACTAACATTTCATG+GGG - chr4_3:46604828-46604847 Msa0643560:intron 40.0%
ACCCCATGAAATGTTAGTCA+GGG + chr4_3:46604832-46604851 None:intergenic 40.0%
TACCCCATGAAATGTTAGTC+AGG + chr4_3:46604833-46604852 None:intergenic 40.0%
ACTATCAAACACGACATTGG+TGG + chr4_3:46604896-46604915 None:intergenic 40.0%
AATGAGGCTGGAACTCCAAT+TGG - chr4_3:46600366-46600385 Msa0643560:three_prime_UTR 45.0%
GGAACTCCAATTGGTGCAAT+TGG - chr4_3:46600375-46600394 Msa0643560:three_prime_UTR 45.0%
TGAGCTCCAATTGCACCAAT+TGG + chr4_3:46600384-46600403 None:intergenic 45.0%
! GCTCATAGTATTGGAGAACC+TGG - chr4_3:46600399-46600418 Msa0643560:three_prime_UTR 45.0%
TTCAAAGTCATCTGAGTCCC+AGG + chr4_3:46600420-46600439 None:intergenic 45.0%
ATGTTCTGCCAAATGCTTGC+TGG - chr4_3:46600513-46600532 Msa0643560:three_prime_UTR 45.0%
CCGAAATTCCAGCAAGCATT+TGG + chr4_3:46600524-46600543 None:intergenic 45.0%
GTCACCACTGGATTGTTTGT+CGG - chr4_3:46601016-46601035 Msa0643560:intron 45.0%
! TTGGTGACTCTTCCCACATA+TGG + chr4_3:46601070-46601089 None:intergenic 45.0%
! ATATGCGGATTGATCGTCGT+CGG - chr4_3:46601138-46601157 Msa0643560:intron 45.0%
! GGTGACTCTTTTCCCACATA+TGG + chr4_3:46601192-46601211 None:intergenic 45.0%
TGTGGGAAAAGAGTCACCTT+CGG - chr4_3:46601194-46601213 Msa0643560:intron 45.0%
ACCGATGATGATCAATCCGA+AGG + chr4_3:46601213-46601232 None:intergenic 45.0%
TTCGGATTGATCATCATCGG+TGG - chr4_3:46601212-46601231 Msa0643560:intron 45.0%
CTGTGCTTCACTATTGTTGC+CGG + chr4_3:46601335-46601354 None:intergenic 45.0%
! CAAGTCCAATAGTGTTGGGT+GGG + chr4_3:46601466-46601485 None:intergenic 45.0%
GCACCAAGTCCAATAGTGTT+GGG + chr4_3:46601470-46601489 None:intergenic 45.0%
!! ACTTGGTGCGTGGATGTAAA+TGG - chr4_3:46601481-46601500 Msa0643560:intron 45.0%
TGCTATCAGGTTTCCGCTAT+CGG + chr4_3:46601515-46601534 None:intergenic 45.0%
CTAACACAACCGCACAAAAC+CGG - chr4_3:46601593-46601612 Msa0643560:CDS 45.0%
AAAATCCTCACCACACAAGC+CGG + chr4_3:46601615-46601634 None:intergenic 45.0%
CTCTTCCTCAAGATGCTGAA+TGG - chr4_3:46601799-46601818 Msa0643560:intron 45.0%
! AGCAGCAGTTTTTATCTCGC+TGG - chr4_3:46602158-46602177 Msa0643560:intron 45.0%
CAAGATGTACTCTTCACCTC+TGG + chr4_3:46602273-46602292 None:intergenic 45.0%
CATACCTTCACTACAACCGA+TGG + chr4_3:46602466-46602485 None:intergenic 45.0%
AAGTACACATTACTGGCGGA+AGG - chr4_3:46602667-46602686 Msa0643560:CDS 45.0%
AGTACACATTACTGGCGGAA+GGG - chr4_3:46602668-46602687 Msa0643560:CDS 45.0%
AGACGCAGGATGATATTGAC+TGG - chr4_3:46602838-46602857 Msa0643560:CDS 45.0%
! GACGCAGGATGATATTGACT+GGG - chr4_3:46602839-46602858 Msa0643560:CDS 45.0%
TAGAGAGGAGATTATCCTGC+TGG - chr4_3:46603027-46603046 Msa0643560:intron 45.0%
AGAGAGGAGATTATCCTGCT+GGG - chr4_3:46603028-46603047 Msa0643560:intron 45.0%
GGGCCCAAAGAAAAACATGA+CGG - chr4_3:46603048-46603067 Msa0643560:CDS 45.0%
GGCCCAAAGAAAAACATGAC+GGG - chr4_3:46603049-46603068 Msa0643560:CDS 45.0%
! GAAAAACATGACGGGACAGT+CGG - chr4_3:46603057-46603076 Msa0643560:CDS 45.0%
! AAAAACATGACGGGACAGTC+GGG - chr4_3:46603058-46603077 Msa0643560:CDS 45.0%
! AGTCGGGTGCTGTAAGATTA+AGG - chr4_3:46603074-46603093 Msa0643560:CDS 45.0%
! GTCGGGTGCTGTAAGATTAA+GGG - chr4_3:46603075-46603094 Msa0643560:CDS 45.0%
! TCGGGTGCTGTAAGATTAAG+GGG - chr4_3:46603076-46603095 Msa0643560:CDS 45.0%
CTGTAAGATTAAGGGGGACT+GGG - chr4_3:46603083-46603102 Msa0643560:CDS 45.0%
TGTAAGATTAAGGGGGACTG+GGG - chr4_3:46603084-46603103 Msa0643560:CDS 45.0%
! GACTGGGGTTAGTGAAAACT+AGG - chr4_3:46603099-46603118 Msa0643560:CDS 45.0%
CAAGGGCCTTAAAGAGGTTA+TGG - chr4_3:46603310-46603329 Msa0643560:intron 45.0%
ATGGGAATTGAAGGGGTTGA+TGG - chr4_3:46603329-46603348 Msa0643560:intron 45.0%
! GATGCACATTCTGGGAATTG+AGG - chr4_3:46603385-46603404 Msa0643560:intron 45.0%
TCAAACTAGGGTCAAGTCCT+TGG - chr4_3:46603616-46603635 Msa0643560:intron 45.0%
GTCCTTGGAATGACAAGACA+TGG - chr4_3:46603631-46603650 Msa0643560:intron 45.0%
! TTTTCGATGCATCCTTGCGT+GGG - chr4_3:46603716-46603735 Msa0643560:intron 45.0%
!! TATAGGCACTGGAATGATCG+AGG - chr4_3:46603795-46603814 Msa0643560:intron 45.0%
TGGCCTGGTCATTGAATGTT+TGG - chr4_3:46603936-46603955 Msa0643560:intron 45.0%
ACGGTGAGCATGAGCATTTA+TGG + chr4_3:46604236-46604255 None:intergenic 45.0%
CTAACCCCTCTTTCTTAGGT+TGG - chr4_3:46604639-46604658 Msa0643560:CDS 45.0%
GGTTCCAACCTAAGAAAGAG+GGG + chr4_3:46604646-46604665 None:intergenic 45.0%
GAGGTTCCAACCTAAGAAAG+AGG + chr4_3:46604648-46604667 None:intergenic 45.0%
!! CTTTCTTAGGTTGGAACCTC+CGG - chr4_3:46604648-46604667 Msa0643560:CDS 45.0%
GAGCCAAGCCTATTCTATCT+AGG - chr4_3:46604683-46604702 Msa0643560:CDS 45.0%
!!! TTTTTATTTTTTTTATTTCT+AGG + chr4_3:46602624-46602643 None:intergenic 5.0%
! CAGTGGTGACTCTTTTCCCA+TGG + chr4_3:46601006-46601025 None:intergenic 50.0%
CATGGGAAAAGAGTCACCAC+TGG - chr4_3:46601004-46601023 Msa0643560:intron 50.0%
ACCACTGGATTGTTTGTCGG+TGG - chr4_3:46601019-46601038 Msa0643560:intron 50.0%
CCACTGGATTGTTTGTCGGT+GGG - chr4_3:46601020-46601039 Msa0643560:intron 50.0%
GACGACGATCAATCCGCATA+TGG + chr4_3:46601139-46601158 None:intergenic 50.0%
GCAGCACCACCTATCAGTAT+TGG + chr4_3:46601294-46601313 None:intergenic 50.0%
!! ATACTGATAGGTGGTGCTGC+TGG - chr4_3:46601294-46601313 Msa0643560:intron 50.0%
TGCTTCACTATTGTTGCCGG+CGG + chr4_3:46601332-46601351 None:intergenic 50.0%
TCACACCCACCCAACACTAT+TGG - chr4_3:46601458-46601477 Msa0643560:intron 50.0%
! CCAAGTCCAATAGTGTTGGG+TGG + chr4_3:46601467-46601486 None:intergenic 50.0%
CCACCCAACACTATTGGACT+TGG - chr4_3:46601464-46601483 Msa0643560:intron 50.0%
CGCACCAAGTCCAATAGTGT+TGG + chr4_3:46601471-46601490 None:intergenic 50.0%
!! ACACTATTGGACTTGGTGCG+TGG - chr4_3:46601471-46601490 Msa0643560:intron 50.0%
TGGTGCGTGGATGTAAATGG+TGG - chr4_3:46601484-46601503 Msa0643560:intron 50.0%
GGTGCGTGGATGTAAATGGT+GGG - chr4_3:46601485-46601504 Msa0643560:intron 50.0%
GCTATCAGGTTTCCGCTATC+GGG + chr4_3:46601514-46601533 None:intergenic 50.0%
!! GATAGCGGAAACCTGATAGC+AGG - chr4_3:46601514-46601533 Msa0643560:CDS 50.0%
!! CGGTTTTGTGCGGTTGTGTT+AGG + chr4_3:46601595-46601614 None:intergenic 50.0%
! TGTTGAGGTGCCAACATAGC+AGG - chr4_3:46601970-46601989 Msa0643560:CDS 50.0%
ATGGGGCTTAACAGAAGGGT+AGG + chr4_3:46602024-46602043 None:intergenic 50.0%
GGCAATGGGGCTTAACAGAA+GGG + chr4_3:46602028-46602047 None:intergenic 50.0%
TGGCAATGGGGCTTAACAGA+AGG + chr4_3:46602029-46602048 None:intergenic 50.0%
AAGATGGGTGGTCTGGCAAT+GGG + chr4_3:46602042-46602061 None:intergenic 50.0%
AGACTAGAAGATGGGTGGTC+TGG + chr4_3:46602049-46602068 None:intergenic 50.0%
AAGCTTCAAGTGGAACCCCA+AGG - chr4_3:46602388-46602407 Msa0643560:intron 50.0%
AGCTTCAAGTGGAACCCCAA+GGG - chr4_3:46602389-46602408 Msa0643560:intron 50.0%
TTCACTTCGGCTAGACCCTT+GGG + chr4_3:46602407-46602426 None:intergenic 50.0%
! GCTTCCATCGGTTGTAGTGA+AGG - chr4_3:46602459-46602478 Msa0643560:intron 50.0%
! TGTTTTTCTTTGGGCCCAGC+AGG + chr4_3:46603045-46603064 None:intergenic 50.0%
! CGGGTGCTGTAAGATTAAGG+GGG - chr4_3:46603077-46603096 Msa0643560:CDS 50.0%
GCTGTAAGATTAAGGGGGAC+TGG - chr4_3:46603082-46603101 Msa0643560:CDS 50.0%
CATCAGCAAGGGCCTTAAAG+AGG - chr4_3:46603304-46603323 Msa0643560:intron 50.0%
GGAATTGAGGCTGCCAGATA+TGG - chr4_3:46603398-46603417 Msa0643560:intron 50.0%
! CTTTTCGATGCATCCTTGCG+TGG - chr4_3:46603715-46603734 Msa0643560:intron 50.0%
TTGGCTCCTTGAAGCAACAC+CGG + chr4_3:46604670-46604689 None:intergenic 50.0%
CCCACCGACAAACAATCCAG+TGG + chr4_3:46601023-46601042 None:intergenic 55.0%
TTCACTATTGTTGCCGGCGG+CGG + chr4_3:46601329-46601348 None:intergenic 55.0%
! GCGTGGATGTAAATGGTGGG+TGG - chr4_3:46601488-46601507 Msa0643560:CDS 55.0%
TCGTTGGGCAACCTGCTATC+AGG + chr4_3:46601528-46601547 None:intergenic 55.0%
AGCCTCCTGCAAGACTCGTT+GGG + chr4_3:46601543-46601562 None:intergenic 55.0%
!! CCACACAAGCCGGTTTTGTG+CGG + chr4_3:46601605-46601624 None:intergenic 55.0%
!! CAAAACCGGCTTGTGTGGTG+AGG - chr4_3:46601607-46601626 Msa0643560:CDS 55.0%
AGATGGGTGGTCTGGCAATG+GGG + chr4_3:46602041-46602060 None:intergenic 55.0%
GAAGATGGGTGGTCTGGCAA+TGG + chr4_3:46602043-46602062 None:intergenic 55.0%
TCACTTCGGCTAGACCCTTG+GGG + chr4_3:46602406-46602425 None:intergenic 55.0%
GTTCACTTCGGCTAGACCCT+TGG + chr4_3:46602408-46602427 None:intergenic 55.0%
! GCAGAAGTGTGCTTAGACGC+AGG - chr4_3:46602824-46602843 Msa0643560:intron 55.0%
GATGCATCCTTGCGTGGGAA+GGG - chr4_3:46603721-46603740 Msa0643560:intron 55.0%
GGGAAGGGTGACCCAATTGA+AGG - chr4_3:46603736-46603755 Msa0643560:intron 55.0%
!! GAACCTCCGGTGTTGCTTCA+AGG - chr4_3:46604661-46604680 Msa0643560:CDS 55.0%
AGTCAGGGTCTGCACCTCTT+GGG + chr4_3:46604817-46604836 None:intergenic 55.0%
TAGTCAGGGTCTGCACCTCT+TGG + chr4_3:46604818-46604837 None:intergenic 55.0%
! TGCGGATTGATCGTCGTCGG+TGG - chr4_3:46601141-46601160 Msa0643560:intron 60.0%
! GCGGATTGATCGTCGTCGGT+GGG - chr4_3:46601142-46601161 Msa0643560:intron 60.0%
!! CTGATAGGTGGTGCTGCTGG+CGG - chr4_3:46601297-46601316 Msa0643560:intron 60.0%
! AGTGTTGGGTGGGTGTGACG+AGG + chr4_3:46601456-46601475 None:intergenic 60.0%
!! AATGGTGGGTGGCCCGATAG+CGG - chr4_3:46601499-46601518 Msa0643560:CDS 60.0%
GGTTGCCCAACGAGTCTTGC+AGG - chr4_3:46601535-46601554 Msa0643560:CDS 60.0%
TGCCCAACGAGTCTTGCAGG+AGG - chr4_3:46601538-46601557 Msa0643560:CDS 60.0%
GAGCCTCCTGCAAGACTCGT+TGG + chr4_3:46601544-46601563 None:intergenic 60.0%
!! CCGCACAAAACCGGCTTGTG+TGG - chr4_3:46601602-46601621 Msa0643560:CDS 60.0%
CGATGCATCCTTGCGTGGGA+AGG - chr4_3:46603720-46603739 Msa0643560:intron 60.0%
GCTCCTTGAAGCAACACCGG+AGG + chr4_3:46604667-46604686 None:intergenic 60.0%
TGGGTCACCCTTCCCACGCA+AGG + chr4_3:46603731-46603750 None:intergenic 65.0%
CTGGCGGAAAATGCCGCCGC+CGG - chr4_3:46601313-46601332 Msa0643560:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 46600336 46604978 46600336 ID=Msa0643560;Name=Msa0643560
chr4_3 mRNA 46600336 46604978 46600336 ID=Msa0643560-mRNA-1;Parent=Msa0643560;Name=Msa0643560-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.75|0.66|0.88|0.62|0.44|9|267|361
chr4_3 exon 46600336 46600657 46600336 ID=Msa0643560-mRNA-1:exon:10946;Parent=Msa0643560-mRNA-1
chr4_3 exon 46601487 46601689 46601487 ID=Msa0643560-mRNA-1:exon:10945;Parent=Msa0643560-mRNA-1
chr4_3 exon 46601800 46602004 46601800 ID=Msa0643560-mRNA-1:exon:10944;Parent=Msa0643560-mRNA-1
chr4_3 exon 46602625 46602719 46602625 ID=Msa0643560-mRNA-1:exon:10943;Parent=Msa0643560-mRNA-1
chr4_3 exon 46602834 46602950 46602834 ID=Msa0643560-mRNA-1:exon:10942;Parent=Msa0643560-mRNA-1
chr4_3 exon 46603039 46603151 46603039 ID=Msa0643560-mRNA-1:exon:10941;Parent=Msa0643560-mRNA-1
chr4_3 exon 46603184 46603193 46603184 ID=Msa0643560-mRNA-1:exon:10940;Parent=Msa0643560-mRNA-1
chr4_3 exon 46604566 46604717 46604566 ID=Msa0643560-mRNA-1:exon:10939;Parent=Msa0643560-mRNA-1
chr4_3 exon 46604843 46604978 46604843 ID=Msa0643560-mRNA-1:exon:10938;Parent=Msa0643560-mRNA-1
chr4_3 CDS 46604843 46604978 46604843 ID=Msa0643560-mRNA-1:cds;Parent=Msa0643560-mRNA-1
chr4_3 CDS 46604566 46604717 46604566 ID=Msa0643560-mRNA-1:cds;Parent=Msa0643560-mRNA-1
chr4_3 CDS 46603184 46603193 46603184 ID=Msa0643560-mRNA-1:cds;Parent=Msa0643560-mRNA-1
chr4_3 CDS 46603039 46603151 46603039 ID=Msa0643560-mRNA-1:cds;Parent=Msa0643560-mRNA-1
chr4_3 CDS 46602834 46602950 46602834 ID=Msa0643560-mRNA-1:cds;Parent=Msa0643560-mRNA-1
chr4_3 CDS 46602625 46602719 46602625 ID=Msa0643560-mRNA-1:cds;Parent=Msa0643560-mRNA-1
chr4_3 CDS 46601800 46602004 46601800 ID=Msa0643560-mRNA-1:cds;Parent=Msa0643560-mRNA-1
chr4_3 CDS 46601487 46601689 46601487 ID=Msa0643560-mRNA-1:cds;Parent=Msa0643560-mRNA-1
chr4_3 CDS 46600603 46600657 46600603 ID=Msa0643560-mRNA-1:cds;Parent=Msa0643560-mRNA-1
chr4_3 three_prime_UTR 46600336 46600602 46600336 ID=Msa0643560-mRNA-1:three_prime_utr;Parent=Msa0643560-mRNA-1
Gene Sequence

>Msa0643560

TATTTGTCTATCACGTTATCGTTTAAAAAAAATGAGGCTGGAACTCCAATTGGTGCAATTGGAGCTCATAGTATTGGAGAACCTGGGACTCAGATGACTTTGAAAACTTTTCACTTTGCTGGGGTTGCAAGCATGAATGTTACACTTGGAGTTCCTCGCATCATAGAAATAATAAATGGAGCATCCAATATTAAGACACCGATCATTACTGCAATACTTGAGAGGGATGATAATGCAAAAACTGCAAAGATAGTGAAGGGATGCATAGAAAAAACAAATTTAGGCCAGGTTGCGAAGACAGTTTTTATCTCGCTGGACATGGGCATAATTGAAAAGGCAGGACTGAATATAGATGCCAATATTGTGAAAGAATCAATTTTGCAGACTGGAAAACTGAAGTTGAAGCCAGAGAATGTTAAGATTTTGGATATTAAAAAGCTTCAAGTGGAACCCCAAGGGTCTAGCCGAAGTGAACTCCTTTTTCAACTTAATAATCTCAAAAATTTGCTTCCATCGGTTGTAGTGAAGGGAGTTAAAACTGTCGAACGAACTGTCCTAGAAATAAAAAAAATAAAAACAAATGATGGTAAAGAATCTGAGAAGTACACATTACTGGCGGAAGGCAAGGGCCTTAAAGAGGTTATGGGAATTGAAGGGGTTGATGGACATAAAACCGTTACTAATCATATCATTGAACTGATGCACATTCTGGGAATTGAGGCTGCCAGATATGGTATCATAGATCAGATACAGTATACAATGAAACAGCATGGAATGAGCATAGACGTACGCCATATTATGCTTCTAGCAGATATGATGACTGTCAGGGGTCAAGTCCTTGGAATGACAAGACATGGAATTCAAAAGATGGGCAGAAGTGCATTAATGCTTGCATCATTTGAGAGTTCAACAGACTATCTTTTCGATGCATCCTTGCGTGGGAAGGGTGACCCAATTGAAGGAGTGAGTGATTGCATAATCATGGGTAAACCTATTCATATAGGCACTGGAATGATCGAGGTCAAACAAAGGTTGGAACCTCCGGTGTTGCTTCAAGGAGCCAAGCCTATTCTATCTAGGGTTTGA

Protein sequence

>Msa0643560

YLSITLSFKKNEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIIEIINGASNIKTPIITAILERDDNAKTAKIVKGCIEKTNLGQVAKTVFISLDMGIIEKAGLNIDANIVKESILQTGKLKLKPENVKILDIKKLQVEPQGSSRSELLFQLNNLKNLLPSVVVKGVKTVERTVLEIKKIKTNDGKESEKYTLLAEGKGLKEVMGIEGVDGHKTVTNHIIELMHILGIEAARYGIIDQIQYTMKQHGMSIDVRHIMLLADMMTVRGQVLGMTRHGIQKMGRSALMLASFESSTDYLFDASLRGKGDPIEGVSDCIIMGKPIHIGTGMIEVKQRLEPPVLLQGAKPILSRV*