AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0623790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0623790 MtrunA17_Chr4g0030391 90.133 375 2 1 1 340 1026 1400 0.0 659
Msa0623790 MtrunA17_Chr4g0030401 84.533 375 23 1 1 340 1030 1404 0.0 618
Msa0623790 MtrunA17_Chr5g0406121 28.205 390 200 11 7 316 1070 1459 1.23e-36 140
Msa0623790 MtrunA17_Chr4g0044991 41.121 107 62 1 1 106 1097 1203 5.10e-18 85.5
Msa0623790 MtrunA17_Chr4g0044991 33.858 127 82 2 200 325 1502 1627 5.01e-15 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0623790 AT5G60040.1 50.532 376 144 6 1 338 1005 1376 4.72e-102 327
Msa0623790 AT5G60040.2 50.000 372 150 6 1 338 1022 1391 1.52e-98 318
Msa0623790 AT4G35800.2 27.569 399 199 9 7 320 1071 1464 3.02e-37 142
Msa0623790 AT4G35800.1 27.569 399 199 9 7 320 1071 1464 3.02e-37 142
Msa0623790 AT3G57660.1 37.705 122 69 2 1 115 1139 1260 1.25e-18 87.8
Msa0623790 AT3G57660.1 34.653 101 66 0 225 325 1569 1669 1.16e-11 66.6
Msa0623790 AT3G57660.2 37.705 122 69 2 1 115 1126 1247 1.31e-18 87.8
Msa0623790 AT3G57660.2 34.653 101 66 0 225 325 1556 1656 1.16e-11 66.6

Find 78 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATATTACATTGCCATATT+TGG 0.142955 4_3:-1115795 Msa0623790:three_prime_UTR
TTTGCAGAATGTTAAGATTT+TGG 0.161242 4_3:-1118283 Msa0623790:intron
TCTATAGTAAATTGTATATT+TGG 0.200325 4_3:-1115717 Msa0623790:three_prime_UTR
AATTGATTCTTTCACAATAT+TGG 0.204750 4_3:+1118420 None:intergenic
TGAGATTATTAAGTTGAAAA+AGG 0.235822 4_3:+1118211 None:intergenic
CGCATCATAGAAATAATAAA+TGG 0.278334 4_3:-1120024 Msa0623790:CDS
ATGAAGTGCAAGACCAAATA+TGG 0.300484 4_3:+1115782 None:intergenic
TTCACTTCGGCTAGACCCTT+GGG 0.332446 4_3:+1118236 None:intergenic
GGAACTCCAATTGGTGCAAT+TGG 0.343575 4_3:-1120266 Msa0623790:CDS
AATGATCGGTGTCTTAATAT+TGG 0.345118 4_3:+1119996 None:intergenic
GAGCCAAGCCTATTCTATCT+AGG 0.353081 4_3:-1115963 Msa0623790:CDS
CAATCACTCACTCCTTCAAT+TGG 0.356642 4_3:+1116898 None:intergenic
CTTTCTTAGGTTGGAACCTC+CGG 0.370839 4_3:-1115998 Msa0623790:intron
ATTCCAGTGCCTATATGAAT+AGG 0.375180 4_3:+1116859 None:intergenic
GAACCTCCGGTGTTGCTTCA+AGG 0.395277 4_3:-1115985 Msa0623790:CDS
TAGCAGATATGATGACTGTC+AGG 0.404647 4_3:-1117154 Msa0623790:CDS
TATCTGCTAGAAGCATAATA+TGG 0.411824 4_3:+1117168 None:intergenic
CGATGCATCCTTGCGTGGGA+AGG 0.413910 4_3:-1116926 Msa0623790:CDS
TCAAACTAGGGTCAAGTCCT+TGG 0.415181 4_3:-1117030 Msa0623790:intron
ATCTGAGAAGTACACATTAC+TGG 0.415625 4_3:-1117984 Msa0623790:CDS
AGACCCTGACTAACATTTCA+TGG 0.416185 4_3:-1115820 Msa0623790:three_prime_UTR
GTTCACTTCGGCTAGACCCT+TGG 0.417101 4_3:+1118235 None:intergenic
TACCCCATGAAATGTTAGTC+AGG 0.421471 4_3:+1115816 None:intergenic
TAGTCAGGGTCTGCACCTCT+TGG 0.436620 4_3:+1115831 None:intergenic
CTTCAAACCCTAGATAGAAT+AGG 0.436751 4_3:+1115955 None:intergenic
GAGGTTGTAGAATTTACTCT+TGG 0.437050 4_3:-1115870 Msa0623790:three_prime_UTR
ATGGGTAAACCTATTCATAT+AGG 0.444116 4_3:-1116868 Msa0623790:CDS
TGAGCTCCAATTGCACCAAT+TGG 0.449787 4_3:+1120260 None:intergenic
CTGTTATTAGATGTTACACT+TGG 0.454857 4_3:-1120054 Msa0623790:intron
AGTGAGTGATTGCATAATCA+TGG 0.458045 4_3:-1116887 Msa0623790:CDS
TTCAAAGTCATCTGAGTCCC+AGG 0.463634 4_3:+1120224 None:intergenic
AGTCAGGGTCTGCACCTCTT+GGG 0.463787 4_3:+1115832 None:intergenic
ATTGAGGCTGGAACTCCAAT+TGG 0.466178 4_3:-1120275 Msa0623790:CDS
GCTCATAGTATTGGAGAACC+TGG 0.500736 4_3:-1120242 Msa0623790:CDS
AGCCAAGCCTATTCTATCTA+GGG 0.509895 4_3:-1115962 Msa0623790:CDS
AAGACATGGAATTCAAAAGA+TGG 0.509948 4_3:-1117001 Msa0623790:CDS
AACCCTAGATAGAATAGGCT+TGG 0.512637 4_3:+1115960 None:intergenic
GCAATTGGAGCTCATAGTAT+TGG 0.512888 4_3:-1120251 Msa0623790:CDS
TTCCATGTCTTGTCATTCCA+AGG 0.514932 4_3:+1117013 None:intergenic
GGACATGGGCATAATTGAAA+AGG 0.515183 4_3:-1118461 Msa0623790:CDS
AAACCTATTCATATAGGCAC+TGG 0.516311 4_3:-1116862 Msa0623790:CDS
GACCCTGACTAACATTTCAT+GGG 0.517007 4_3:-1115819 Msa0623790:three_prime_UTR
GGGAAGGGTGACCCAATTGA+AGG 0.525487 4_3:-1116910 Msa0623790:CDS
GCTTCCATCGGTTGTAGTGA+AGG 0.526606 4_3:-1118181 Msa0623790:intron
AATCACTCACTCCTTCAATT+GGG 0.539564 4_3:+1116899 None:intergenic
GATGCATCCTTGCGTGGGAA+GGG 0.543229 4_3:-1116925 Msa0623790:CDS
TTGGCTCCTTGAAGCAACAC+CGG 0.561174 4_3:+1115979 None:intergenic
AATACTATCAAACACGACAT+TGG 0.572949 4_3:+1115750 None:intergenic
ACTATCAAACACGACATTGG+TGG 0.581040 4_3:+1115753 None:intergenic
ACCCCATGAAATGTTAGTCA+GGG 0.582180 4_3:+1115817 None:intergenic
AGACATGGAATTCAAAAGAT+GGG 0.582691 4_3:-1117000 Msa0623790:CDS
GTGAGTGATTGCATAATCAT+GGG 0.585359 4_3:-1116886 Msa0623790:CDS
GTCCTTGGAATGACAAGACA+TGG 0.589188 4_3:-1117015 Msa0623790:CDS
TGGGTCACCCTTCCCACGCA+AGG 0.590838 4_3:+1116918 None:intergenic
AAGTACACATTACTGGCGGA+AGG 0.592200 4_3:-1117977 Msa0623790:CDS
GTATATTAGCAGCAAGAATG+TGG 0.593973 4_3:-1115930 Msa0623790:three_prime_UTR
TCAAGTATTGCAGTAATGAT+CGG 0.594138 4_3:+1119982 None:intergenic
CATTACTGCAATACTTGAGA+GGG 0.596964 4_3:-1119977 Msa0623790:CDS
ATGGGCATAATTGAAAAGGC+AGG 0.601114 4_3:-1118457 Msa0623790:CDS
AAAACTGCAAAGATAGTGAA+GGG 0.601570 4_3:-1119943 Msa0623790:CDS
TTTATTATTTCTATGATGCG+AGG 0.606008 4_3:+1120027 None:intergenic
AAGCTTCAAGTGGAACCCCA+AGG 0.610926 4_3:-1118252 Msa0623790:CDS
TCATTACTGCAATACTTGAG+AGG 0.612926 4_3:-1119978 Msa0623790:CDS
AGCTTCAAGTGGAACCCCAA+GGG 0.615564 4_3:-1118251 Msa0623790:CDS
TCACTTCGGCTAGACCCTTG+GGG 0.622915 4_3:+1118237 None:intergenic
AGAATGTGGATTATACATGA+AGG 0.627558 4_3:-1115916 Msa0623790:three_prime_UTR
CTCATAGTATTGGAGAACCT+GGG 0.631808 4_3:-1120241 Msa0623790:CDS
TCTGATAATATTTGCCCAAG+AGG 0.632156 4_3:-1115846 Msa0623790:three_prime_UTR
CAGTATACAATGAAACAGCA+TGG 0.633424 4_3:-1117209 Msa0623790:CDS
GCTCCTTGAAGCAACACCGG+AGG 0.634596 4_3:+1115982 None:intergenic
CATACCTTCACTACAACCGA+TGG 0.639841 4_3:+1118177 None:intergenic
AGCAGATATGATGACTGTCA+GGG 0.641689 4_3:-1117153 Msa0623790:intron
AGTACACATTACTGGCGGAA+GGG 0.646891 4_3:-1117976 Msa0623790:intron
AAAACTGAAGTTGAAGCCAG+AGG 0.675074 4_3:-1118386 Msa0623790:intron
TATAGGCACTGGAATGATCG+AGG 0.686172 4_3:-1116851 Msa0623790:CDS
ACCCTGACTAACATTTCATG+GGG 0.695043 4_3:-1115818 Msa0623790:three_prime_UTR
GAATGATCGAGGTCAAACAA+AGG 0.700498 4_3:-1116840 Msa0623790:intron
TGAGAAGTACACATTACTGG+CGG 0.721019 4_3:-1117981 Msa0623790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATAAAAACAAATGA+TGG - chr4_3:1117991-1118010 Msa0623790:CDS 10.0%
!!! TTGTATTATATGATTTTTTA+AGG - chr4_3:1119408-1119427 Msa0623790:intron 10.0%
!!! TTAAATATACCTTTTTTTAA+TGG - chr4_3:1119671-1119690 Msa0623790:intron 10.0%
!!! TTTATTTTTCCATTAAAAAA+AGG + chr4_3:1119683-1119702 None:intergenic 10.0%
!! TTATCGTTTAAAAAAAATTG+AGG - chr4_3:1115713-1115732 Msa0623790:three_prime_UTR 15.0%
!! GTTATTTGAAAATTACTATA+AGG - chr4_3:1118877-1118896 Msa0623790:intron 15.0%
!!! AATTTTCTACATATATTACA+AGG - chr4_3:1119917-1119936 Msa0623790:CDS 15.0%
!! TCTATAGTAAATTGTATATT+TGG - chr4_3:1120287-1120306 Msa0623790:CDS 15.0%
!! TAACATCTAATAACAGATTA+AGG + chr4_3:1115946-1115965 None:intergenic 20.0%
!! TGCATAGAAAAAACAAATTT+AGG - chr4_3:1116085-1116104 Msa0623790:intron 20.0%
!! ATATAAATATACTATCAGTG+TGG + chr4_3:1116151-1116170 None:intergenic 20.0%
!! ACAATTAATGATTTATCCAT+GGG - chr4_3:1116350-1116369 Msa0623790:intron 20.0%
!! ACAAATATACATTCTTTACA+TGG + chr4_3:1116754-1116773 None:intergenic 20.0%
!!! ATGATTGATAACTAATCTTT+TGG + chr4_3:1117260-1117279 None:intergenic 20.0%
!!! AATTGATTCTTTCACAATAT+TGG + chr4_3:1117587-1117606 None:intergenic 20.0%
!!! AAAAAAGCTTTGAATATTAG+AGG + chr4_3:1117692-1117711 None:intergenic 20.0%
!!! TGAGATTATTAAGTTGAAAA+AGG + chr4_3:1117796-1117815 None:intergenic 20.0%
!!! CTTTGTATTTTATATTCAGA+TGG - chr4_3:1117904-1117923 Msa0623790:intron 20.0%
!! TCTTTCATAATATAAAGTGA+TGG - chr4_3:1118293-1118312 Msa0623790:intron 20.0%
!! CTTTCATAATATAAAGTGAT+GGG - chr4_3:1118294-1118313 Msa0623790:intron 20.0%
!! TTCACATTAATCTGAATATA+CGG + chr4_3:1118346-1118365 None:intergenic 20.0%
!! ATTAATGTGAAATGAAAATC+AGG - chr4_3:1118355-1118374 Msa0623790:intron 20.0%
!!! GACTTGTAATTTAAACTTTT+TGG + chr4_3:1118903-1118922 None:intergenic 20.0%
!! TTTATGTGATTTATCAAACT+AGG - chr4_3:1118961-1118980 Msa0623790:intron 20.0%
!! TTATGTGATTTATCAAACTA+GGG - chr4_3:1118962-1118981 Msa0623790:intron 20.0%
!! AAATATTCAAGGCTTAAATT+TGG - chr4_3:1119239-1119258 Msa0623790:intron 20.0%
!!! CATAAGTTTGTTTTTAGATT+TGG - chr4_3:1119274-1119293 Msa0623790:intron 20.0%
!!! TTTTTAGTTTACTTGCTAAT+CGG + chr4_3:1119325-1119344 None:intergenic 20.0%
!!! TTTTAATAGACTACTATATC+AGG + chr4_3:1119461-1119480 None:intergenic 20.0%
!! GATATAGTAGTCTATTAAAA+TGG - chr4_3:1119461-1119480 Msa0623790:intron 20.0%
!!! TTTGATAATATTACATGAAG+TGG - chr4_3:1119539-1119558 Msa0623790:intron 20.0%
!! AATGACTAAAAGAAAAAAAG+TGG + chr4_3:1119808-1119827 None:intergenic 20.0%
!! TACGCATAAAAAATTTATGT+TGG + chr4_3:1119950-1119969 None:intergenic 20.0%
!! TAATATTACATTGCCATATT+TGG - chr4_3:1120209-1120228 Msa0623790:CDS 20.0%
!!! TTTATTATTTCTATGATGCG+AGG + chr4_3:1115980-1115999 None:intergenic 25.0%
! CGCATCATAGAAATAATAAA+TGG - chr4_3:1115980-1115999 Msa0623790:CDS 25.0%
!!! TCATTATGTTTTGTTGTAAC+AGG + chr4_3:1116308-1116327 None:intergenic 25.0%
! CACAATTAATGATTTATCCA+TGG - chr4_3:1116349-1116368 Msa0623790:intron 25.0%
!!! TAGTTTATTTTTCCCACATA+TGG + chr4_3:1116626-1116645 None:intergenic 25.0%
! ATATGTGGGAAAAATAAACT+AGG - chr4_3:1116625-1116644 Msa0623790:intron 25.0%
! TGATACAATCTTAGAATTTG+TGG - chr4_3:1116927-1116946 Msa0623790:CDS 25.0%
! TTGGAATTGTGTTTATAAGT+GGG + chr4_3:1117002-1117021 None:intergenic 25.0%
!! TTTGGAATTGTGTTTATAAG+TGG + chr4_3:1117003-1117022 None:intergenic 25.0%
! ACACAGTTAGAATAATACTT+TGG + chr4_3:1117021-1117040 None:intergenic 25.0%
! GATAACTAAAGATACAATTC+AGG + chr4_3:1117221-1117240 None:intergenic 25.0%
!! ATCTTTTGGTGGAAAAATAA+TGG + chr4_3:1117246-1117265 None:intergenic 25.0%
!!! ATTGATAACTAATCTTTTGG+TGG + chr4_3:1117257-1117276 None:intergenic 25.0%
!! TTGAATATTAGAGGCATAAA+TGG + chr4_3:1117683-1117702 None:intergenic 25.0%
!! TTTGCAGAATGTTAAGATTT+TGG - chr4_3:1117721-1117740 Msa0623790:intron 25.0%
! AAGTACATAACAAAATACAG+AGG + chr4_3:1118063-1118082 None:intergenic 25.0%
!!! TGTACTTTTAATTTCCACTA+TGG - chr4_3:1118076-1118095 Msa0623790:intron 25.0%
! TGTTTCCTTATATACCTTAT+TGG - chr4_3:1118103-1118122 Msa0623790:intron 25.0%
! ATAGTCCAATAAGGTATATA+AGG + chr4_3:1118111-1118130 None:intergenic 25.0%
! TGCAATAATATAGTCCAATA+AGG + chr4_3:1118120-1118139 None:intergenic 25.0%
!!! CATTAGTTTTTCTTGATTGA+GGG - chr4_3:1118138-1118157 Msa0623790:intron 25.0%
! AGTTCTTCTTCATACATATT+TGG + chr4_3:1118268-1118287 None:intergenic 25.0%
! TATTTATCACAAACACACAT+GGG + chr4_3:1118925-1118944 None:intergenic 25.0%
! ATATTTATCACAAACACACA+TGG + chr4_3:1118926-1118945 None:intergenic 25.0%
! ATACAATGTGTATGTTTATG+TGG - chr4_3:1119197-1119216 Msa0623790:intron 25.0%
! ATGTTTATGTGGTTATAGTA+TGG - chr4_3:1119208-1119227 Msa0623790:intron 25.0%
! TGGTCTATTCAAAATATTCA+AGG - chr4_3:1119228-1119247 Msa0623790:intron 25.0%
! TCTAAAAACAAACTTATGAC+AGG + chr4_3:1119272-1119291 None:intergenic 25.0%
!!! TTTTAGTTTACTTGCTAATC+GGG + chr4_3:1119324-1119343 None:intergenic 25.0%
! TATTTGAGTCTTCATGATTA+AGG - chr4_3:1119500-1119519 Msa0623790:intron 25.0%
! ATTTGAGTCTTCATGATTAA+GGG - chr4_3:1119501-1119520 Msa0623790:intron 25.0%
! TGATTAAGGGATATAAAAGT+TGG - chr4_3:1119514-1119533 Msa0623790:intron 25.0%
! GATTAAATGAAATCATTGCA+CGG + chr4_3:1119613-1119632 None:intergenic 25.0%
! AGAAAAGTAGTATACTTACA+TGG + chr4_3:1119743-1119762 None:intergenic 25.0%
! TAGTCATTGTCAAAATTTGT+TGG - chr4_3:1119820-1119839 Msa0623790:intron 25.0%
! AAATGAATGTTACACATGTA+GGG + chr4_3:1119859-1119878 None:intergenic 25.0%
! AAAATGAATGTTACACATGT+AGG + chr4_3:1119860-1119879 None:intergenic 25.0%
!! GTATCATATTTTCATCACAT+CGG - chr4_3:1119967-1119986 Msa0623790:CDS 25.0%
CGTTTAAAAAAAATTGAGGC+TGG - chr4_3:1115717-1115736 Msa0623790:three_prime_UTR 30.0%
! TTGAAAACTTTTCACTTTGC+TGG - chr4_3:1115798-1115817 Msa0623790:three_prime_UTR 30.0%
! TGAAAACTTTTCACTTTGCT+GGG - chr4_3:1115799-1115818 Msa0623790:three_prime_UTR 30.0%
TGAACAACATAGTCAAAGAA+AGG + chr4_3:1115842-1115861 None:intergenic 30.0%
CTGTTATTAGATGTTACACT+TGG - chr4_3:1115950-1115969 Msa0623790:exon 30.0%
! AATGATCGGTGTCTTAATAT+TGG + chr4_3:1116011-1116030 None:intergenic 30.0%
! TCAAGTATTGCAGTAATGAT+CGG + chr4_3:1116025-1116044 None:intergenic 30.0%
AAAAACTGCAAAGATAGTGA+AGG - chr4_3:1116060-1116079 Msa0623790:intron 30.0%
AAAACTGCAAAGATAGTGAA+GGG - chr4_3:1116061-1116080 Msa0623790:intron 30.0%
AGAAAAAACAAATTTAGGCC+AGG - chr4_3:1116090-1116109 Msa0623790:intron 30.0%
!! TATAGAAAGCTTTAGCTTGA+GGG + chr4_3:1116278-1116297 None:intergenic 30.0%
ATAATGATCTTTGACGAGAA+GGG - chr4_3:1116321-1116340 Msa0623790:intron 30.0%
CACAAATATGATCCATATGT+GGG - chr4_3:1116418-1116437 Msa0623790:intron 30.0%
ACCAATGAAATAATCGTTGT+CGG - chr4_3:1116448-1116467 Msa0623790:intron 30.0%
GACTAATATGATCCATATGT+GGG - chr4_3:1116540-1116559 Msa0623790:intron 30.0%
CACTAATATGATCCATATGT+GGG - chr4_3:1116611-1116630 Msa0623790:intron 30.0%
ACAATCTTAGAATTTGTGGT+TGG - chr4_3:1116931-1116950 Msa0623790:CDS 30.0%
CAATCTTAGAATTTGTGGTT+GGG - chr4_3:1116932-1116951 Msa0623790:CDS 30.0%
TGGAATTGTGTTTATAAGTG+GGG + chr4_3:1117001-1117020 None:intergenic 30.0%
TCAAGAATAGACTAGAAGAT+GGG + chr4_3:1117420-1117439 None:intergenic 30.0%
TTCAAGAATAGACTAGAAGA+TGG + chr4_3:1117421-1117440 None:intergenic 30.0%
! AAAGAATCAATTTTGCAGAC+TGG - chr4_3:1117595-1117614 Msa0623790:intron 30.0%
GGATATTAAAAAGCTTCAAG+TGG - chr4_3:1117742-1117761 Msa0623790:intron 30.0%
! TCTCAAAAATTTGCTTCCAT+CGG - chr4_3:1117811-1117830 Msa0623790:intron 30.0%
!!! ACTTCTTTTTTCTTCTTTGC+AGG - chr4_3:1117933-1117952 Msa0623790:intron 30.0%
!!! CTTCTTTTTTCTTCTTTGCA+GGG - chr4_3:1117934-1117953 Msa0623790:intron 30.0%
!!! GCATTAGTTTTTCTTGATTG+AGG - chr4_3:1118137-1118156 Msa0623790:intron 30.0%
! TATTATTGTTGCTTCATCAC+TGG - chr4_3:1118224-1118243 Msa0623790:CDS 30.0%
! TCATAATATAAAGTGATGGG+TGG - chr4_3:1118297-1118316 Msa0623790:intron 30.0%
AATCAGGAATATGATTAGAG+AGG - chr4_3:1118371-1118390 Msa0623790:intron 30.0%
ATTAACAAGCAGCAATATAG+TGG + chr4_3:1118592-1118611 None:intergenic 30.0%
!!! TTCATTTTTTCTCATCAGCA+AGG - chr4_3:1118651-1118670 Msa0623790:intron 30.0%
!!! TCATTTTTTCTCATCAGCAA+GGG - chr4_3:1118652-1118671 Msa0623790:intron 30.0%
! TATCTGCTAGAAGCATAATA+TGG + chr4_3:1118839-1118858 None:intergenic 30.0%
AAGACATGGAATTCAAAAGA+TGG - chr4_3:1119003-1119022 Msa0623790:intron 30.0%
AGACATGGAATTCAAAAGAT+GGG - chr4_3:1119004-1119023 Msa0623790:intron 30.0%
ATGGGTAAACCTATTCATAT+AGG - chr4_3:1119136-1119155 Msa0623790:intron 30.0%
ACAAGAAACATGAGACATAT+AGG - chr4_3:1119356-1119375 Msa0623790:intron 30.0%
! AGAATGTGGATTATACATGA+AGG - chr4_3:1120088-1120107 Msa0623790:intron 30.0%
!!! CATTGAATGTTTTGAGTTTG+AGG - chr4_3:1120115-1120134 Msa0623790:intron 30.0%
AATACTATCAAACACGACAT+TGG + chr4_3:1120257-1120276 None:intergenic 30.0%
! GAAAACTTTTCACTTTGCTG+GGG - chr4_3:1115800-1115819 Msa0623790:three_prime_UTR 35.0%
TCATTACTGCAATACTTGAG+AGG - chr4_3:1116026-1116045 Msa0623790:intron 35.0%
CATTACTGCAATACTTGAGA+GGG - chr4_3:1116027-1116046 Msa0623790:intron 35.0%
!! ATAGAAAGCTTTAGCTTGAG+GGG + chr4_3:1116277-1116296 None:intergenic 35.0%
!! GTATAGAAAGCTTTAGCTTG+AGG + chr4_3:1116279-1116298 None:intergenic 35.0%
CATAATGATCTTTGACGAGA+AGG - chr4_3:1116320-1116339 Msa0623790:intron 35.0%
CCACATATGGATCATATTTG+TGG + chr4_3:1116420-1116439 None:intergenic 35.0%
CCACAAATATGATCCATATG+TGG - chr4_3:1116417-1116436 Msa0623790:intron 35.0%
ACCGACAACGATTATTTCAT+TGG + chr4_3:1116452-1116471 None:intergenic 35.0%
AATGAAATAATCGTTGTCGG+TGG - chr4_3:1116451-1116470 Msa0623790:intron 35.0%
ATGAAATAATCGTTGTCGGT+GGG - chr4_3:1116452-1116471 Msa0623790:intron 35.0%
CCTCTAATATGATCCATATG+CGG - chr4_3:1116486-1116505 Msa0623790:intron 35.0%
CGACTAATATGATCCATATG+TGG - chr4_3:1116539-1116558 Msa0623790:intron 35.0%
CCACATATGGATCATATTAG+TGG + chr4_3:1116542-1116561 None:intergenic 35.0%
CCACTAATATGATCCATATG+TGG - chr4_3:1116610-1116629 Msa0623790:intron 35.0%
AGGAACAAACCAATACTGAT+AGG - chr4_3:1116645-1116664 Msa0623790:intron 35.0%
AACAAACCAATACTGATAGG+TGG - chr4_3:1116648-1116667 Msa0623790:intron 35.0%
TCTTTACATGGTATTAGAGC+TGG + chr4_3:1116742-1116761 None:intergenic 35.0%
TGTGTTAAAGAGTCTCACAT+TGG + chr4_3:1116796-1116815 None:intergenic 35.0%
CAACATGCTTAATGAAAGGA+TGG + chr4_3:1117318-1117337 None:intergenic 35.0%
TCCTTTCATTAAGCATGTTG+AGG - chr4_3:1117318-1117337 Msa0623790:intron 35.0%
ACCTCAACATGCTTAATGAA+AGG + chr4_3:1117322-1117341 None:intergenic 35.0%
AATTGACATTCCTGCTATGT+TGG + chr4_3:1117346-1117365 None:intergenic 35.0%
CACTTTGTTCCAATCTATAC+AGG - chr4_3:1117462-1117481 Msa0623790:intron 35.0%
GTTGAAAAAGGAGTTCACTT+CGG + chr4_3:1117784-1117803 None:intergenic 35.0%
!!! GATACAGTGTTTGTTTTGTC+TGG - chr4_3:1117881-1117900 Msa0623790:intron 35.0%
! ATCTGAGAAGTACACATTAC+TGG - chr4_3:1118020-1118039 Msa0623790:CDS 35.0%
TAAGGAAACATATGCCATAG+TGG + chr4_3:1118093-1118112 None:intergenic 35.0%
! GTTGTCTGTGTATGCTTTTA+AGG - chr4_3:1118501-1118520 Msa0623790:CDS 35.0%
CAATTCCCATAACCTCTTTA+AGG + chr4_3:1118678-1118697 None:intergenic 35.0%
AAAGAGGTTATGGGAATTGA+AGG - chr4_3:1118679-1118698 Msa0623790:intron 35.0%
AAGAGGTTATGGGAATTGAA+GGG - chr4_3:1118680-1118699 Msa0623790:intron 35.0%
ATTGAACTGATGCACATTCT+GGG - chr4_3:1118735-1118754 Msa0623790:intron 35.0%
CTGATCTATGATACCATATC+TGG + chr4_3:1118772-1118791 None:intergenic 35.0%
CAGTATACAATGAAACAGCA+TGG - chr4_3:1118795-1118814 Msa0623790:intron 35.0%
AATCACTCACTCCTTCAATT+GGG + chr4_3:1119108-1119127 None:intergenic 35.0%
AGTGAGTGATTGCATAATCA+TGG - chr4_3:1119117-1119136 Msa0623790:intron 35.0%
GTGAGTGATTGCATAATCAT+GGG - chr4_3:1119118-1119137 Msa0623790:intron 35.0%
AAACCTATTCATATAGGCAC+TGG - chr4_3:1119142-1119161 Msa0623790:intron 35.0%
ATTCCAGTGCCTATATGAAT+AGG + chr4_3:1119148-1119167 None:intergenic 35.0%
!!! GTTTGTTTTTAGATTTGGCC+TGG - chr4_3:1119279-1119298 Msa0623790:intron 35.0%
ATACCAAACATTCAATGACC+AGG + chr4_3:1119300-1119319 None:intergenic 35.0%
! AAAATGGTTAGTCCTTGACA+TGG - chr4_3:1119477-1119496 Msa0623790:intron 35.0%
AAGACTCAAATACCATGTCA+AGG + chr4_3:1119492-1119511 None:intergenic 35.0%
TTCAAAATTCACGCAAGTGT+TGG + chr4_3:1119635-1119654 None:intergenic 35.0%
AGTTCTTATGTAGCTCGTAT+TGG - chr4_3:1119880-1119899 Msa0623790:intron 35.0%
CTTCAAACCCTAGATAGAAT+AGG + chr4_3:1120052-1120071 None:intergenic 35.0%
GTATATTAGCAGCAAGAATG+TGG - chr4_3:1120074-1120093 Msa0623790:intron 35.0%
GAGGTTGTAGAATTTACTCT+TGG - chr4_3:1120134-1120153 Msa0623790:intron 35.0%
TCTGATAATATTTGCCCAAG+AGG - chr4_3:1120158-1120177 Msa0623790:intron 35.0%
ATGAAGTGCAAGACCAAATA+TGG + chr4_3:1120225-1120244 None:intergenic 35.0%
GCAATTGGAGCTCATAGTAT+TGG - chr4_3:1115753-1115772 Msa0623790:three_prime_UTR 40.0%
! CTCATAGTATTGGAGAACCT+GGG - chr4_3:1115763-1115782 Msa0623790:three_prime_UTR 40.0%
! CCAAATGCTTGCTGGAATTT+CGG - chr4_3:1115884-1115903 Msa0623790:three_prime_UTR 40.0%
GCATTCTGTTGCACATTGAT+TGG - chr4_3:1115906-1115925 Msa0623790:three_prime_UTR 40.0%
CACTCATACAACTACATACC+TGG + chr4_3:1116111-1116130 None:intergenic 40.0%
CAGGTATGTAGTTGTATGAG+TGG - chr4_3:1116109-1116128 Msa0623790:intron 40.0%
CCGCATATGGATCATATTAG+AGG + chr4_3:1116489-1116508 None:intergenic 40.0%
ACCTTCGGATTGATCATCAT+CGG - chr4_3:1116572-1116591 Msa0623790:intron 40.0%
GATATCCATTCAGCATCTTG+AGG + chr4_3:1117170-1117189 None:intergenic 40.0%
AGAATAGACTAGAAGATGGG+TGG + chr4_3:1117417-1117436 None:intergenic 40.0%
TCTTCGCAACCTGTATAGAT+TGG + chr4_3:1117474-1117493 None:intergenic 40.0%
! AGTTTTTATCTCGCTGGACA+TGG - chr4_3:1117528-1117547 Msa0623790:intron 40.0%
! GTTTTTATCTCGCTGGACAT+GGG - chr4_3:1117529-1117548 Msa0623790:intron 40.0%
GGACATGGGCATAATTGAAA+AGG - chr4_3:1117543-1117562 Msa0623790:intron 40.0%
ATGGGCATAATTGAAAAGGC+AGG - chr4_3:1117547-1117566 Msa0623790:intron 40.0%
AAAACTGAAGTTGAAGCCAG+AGG - chr4_3:1117618-1117637 Msa0623790:intron 40.0%
! TGAGAAGTACACATTACTGG+CGG - chr4_3:1118023-1118042 Msa0623790:CDS 40.0%
CACACTTCTGCATTCTTTAG+GGG + chr4_3:1118175-1118194 None:intergenic 40.0%
GCACACTTCTGCATTCTTTA+GGG + chr4_3:1118176-1118195 None:intergenic 40.0%
AGCACACTTCTGCATTCTTT+AGG + chr4_3:1118177-1118196 None:intergenic 40.0%
! GTCCCGTCATGTTTTTCTTT+GGG + chr4_3:1118413-1118432 None:intergenic 40.0%
! TGTCCCGTCATGTTTTTCTT+TGG + chr4_3:1118414-1118433 None:intergenic 40.0%
AAGGGCCTTAAAGAGGTTAT+GGG - chr4_3:1118670-1118689 Msa0623790:intron 40.0%
AGAGGTTATGGGAATTGAAG+GGG - chr4_3:1118681-1118700 Msa0623790:intron 40.0%
CATTGAACTGATGCACATTC+TGG - chr4_3:1118734-1118753 Msa0623790:intron 40.0%
TAGCAGATATGATGACTGTC+AGG - chr4_3:1118850-1118869 Msa0623790:intron 40.0%
AGCAGATATGATGACTGTCA+GGG - chr4_3:1118851-1118870 Msa0623790:intron 40.0%
TTCCATGTCTTGTCATTCCA+AGG + chr4_3:1118994-1119013 None:intergenic 40.0%
CAATCACTCACTCCTTCAAT+TGG + chr4_3:1119109-1119128 None:intergenic 40.0%
GAATGATCGAGGTCAAACAA+AGG - chr4_3:1119164-1119183 Msa0623790:intron 40.0%
TTAGCTAACCCCTCTTTCTT+AGG - chr4_3:1119993-1120012 Msa0623790:CDS 40.0%
AGGTTCCAACCTAAGAAAGA+GGG + chr4_3:1120005-1120024 None:intergenic 40.0%
AGCCAAGCCTATTCTATCTA+GGG - chr4_3:1120042-1120061 Msa0623790:CDS 40.0%
AACCCTAGATAGAATAGGCT+TGG + chr4_3:1120047-1120066 None:intergenic 40.0%
AGACCCTGACTAACATTTCA+TGG - chr4_3:1120184-1120203 Msa0623790:intron 40.0%
GACCCTGACTAACATTTCAT+GGG - chr4_3:1120185-1120204 Msa0623790:intron 40.0%
ACCCTGACTAACATTTCATG+GGG - chr4_3:1120186-1120205 Msa0623790:intron 40.0%
ACCCCATGAAATGTTAGTCA+GGG + chr4_3:1120190-1120209 None:intergenic 40.0%
TACCCCATGAAATGTTAGTC+AGG + chr4_3:1120191-1120210 None:intergenic 40.0%
ACTATCAAACACGACATTGG+TGG + chr4_3:1120254-1120273 None:intergenic 40.0%
ATTGAGGCTGGAACTCCAAT+TGG - chr4_3:1115729-1115748 Msa0623790:three_prime_UTR 45.0%
GGAACTCCAATTGGTGCAAT+TGG - chr4_3:1115738-1115757 Msa0623790:three_prime_UTR 45.0%
TGAGCTCCAATTGCACCAAT+TGG + chr4_3:1115747-1115766 None:intergenic 45.0%
! GCTCATAGTATTGGAGAACC+TGG - chr4_3:1115762-1115781 Msa0623790:three_prime_UTR 45.0%
TTCAAAGTCATCTGAGTCCC+AGG + chr4_3:1115783-1115802 None:intergenic 45.0%
ATGTTCTGCCAAATGCTTGC+TGG - chr4_3:1115876-1115895 Msa0623790:three_prime_UTR 45.0%
CCGAAATTCCAGCAAGCATT+TGG + chr4_3:1115887-1115906 None:intergenic 45.0%
GTCACCACTGGATTGTTTGT+CGG - chr4_3:1116379-1116398 Msa0623790:intron 45.0%
! TTGGTGACTCTTCCCACATA+TGG + chr4_3:1116433-1116452 None:intergenic 45.0%
! ATATGCGGATTGATCGTCGT+CGG - chr4_3:1116501-1116520 Msa0623790:intron 45.0%
! GGTGACTCTTTTCCCACATA+TGG + chr4_3:1116555-1116574 None:intergenic 45.0%
TGTGGGAAAAGAGTCACCTT+CGG - chr4_3:1116557-1116576 Msa0623790:intron 45.0%
ACCGATGATGATCAATCCGA+AGG + chr4_3:1116576-1116595 None:intergenic 45.0%
TTCGGATTGATCATCATCGG+TGG - chr4_3:1116575-1116594 Msa0623790:intron 45.0%
CTGTGCTTCACTATTGTTGC+CGG + chr4_3:1116698-1116717 None:intergenic 45.0%
! CAAGTCCAATAGTGTTGGGT+GGG + chr4_3:1116829-1116848 None:intergenic 45.0%
GCACCAAGTCCAATAGTGTT+GGG + chr4_3:1116833-1116852 None:intergenic 45.0%
!! ACTTGGTGCGTGGATGTAAA+TGG - chr4_3:1116844-1116863 Msa0623790:CDS 45.0%
TGCTATCAGGTTTCCGCTAT+CGG + chr4_3:1116878-1116897 None:intergenic 45.0%
CTAACACAACCGCACAAAAC+CGG - chr4_3:1116956-1116975 Msa0623790:CDS 45.0%
AAAATCCTCACCACACAAGC+CGG + chr4_3:1116978-1116997 None:intergenic 45.0%
CTCTTCCTCAAGATGCTGAA+TGG - chr4_3:1117162-1117181 Msa0623790:CDS 45.0%
! AGCAGCAGTTTTTATCTCGC+TGG - chr4_3:1117522-1117541 Msa0623790:intron 45.0%
CAAGATGTACTCTTCACCTC+TGG + chr4_3:1117637-1117656 None:intergenic 45.0%
CATACCTTCACTACAACCGA+TGG + chr4_3:1117830-1117849 None:intergenic 45.0%
AAGTACACATTACTGGCGGA+AGG - chr4_3:1118027-1118046 Msa0623790:CDS 45.0%
AGTACACATTACTGGCGGAA+GGG - chr4_3:1118028-1118047 Msa0623790:CDS 45.0%
AGACGCAGGATGATATTGAC+TGG - chr4_3:1118198-1118217 Msa0623790:CDS 45.0%
! GACGCAGGATGATATTGACT+GGG - chr4_3:1118199-1118218 Msa0623790:CDS 45.0%
TAGAGAGGAGATTATCCTGC+TGG - chr4_3:1118386-1118405 Msa0623790:intron 45.0%
AGAGAGGAGATTATCCTGCT+GGG - chr4_3:1118387-1118406 Msa0623790:CDS 45.0%
GGGCCCAAAGAAAAACATGA+CGG - chr4_3:1118407-1118426 Msa0623790:CDS 45.0%
GGCCCAAAGAAAAACATGAC+GGG - chr4_3:1118408-1118427 Msa0623790:CDS 45.0%
! GAAAAACATGACGGGACAGT+CGG - chr4_3:1118416-1118435 Msa0623790:CDS 45.0%
! AAAAACATGACGGGACAGTC+GGG - chr4_3:1118417-1118436 Msa0623790:CDS 45.0%
! AGTCGGGTGCTGTAAGATTA+AGG - chr4_3:1118433-1118452 Msa0623790:CDS 45.0%
! GTCGGGTGCTGTAAGATTAA+GGG - chr4_3:1118434-1118453 Msa0623790:CDS 45.0%
! TCGGGTGCTGTAAGATTAAG+GGG - chr4_3:1118435-1118454 Msa0623790:CDS 45.0%
CTGTAAGATTAAGGGGGACT+GGG - chr4_3:1118442-1118461 Msa0623790:CDS 45.0%
TGTAAGATTAAGGGGGACTG+GGG - chr4_3:1118443-1118462 Msa0623790:CDS 45.0%
! GACTGGGGTTAGTGAAAACT+AGG - chr4_3:1118458-1118477 Msa0623790:CDS 45.0%
CAAGGGCCTTAAAGAGGTTA+TGG - chr4_3:1118669-1118688 Msa0623790:intron 45.0%
ATGGGAATTGAAGGGGTTGA+TGG - chr4_3:1118688-1118707 Msa0623790:intron 45.0%
! GATGCACATTCTGGGAATTG+AGG - chr4_3:1118743-1118762 Msa0623790:intron 45.0%
TCAAACTAGGGTCAAGTCCT+TGG - chr4_3:1118974-1118993 Msa0623790:intron 45.0%
GTCCTTGGAATGACAAGACA+TGG - chr4_3:1118989-1119008 Msa0623790:intron 45.0%
! TTTTCGATGCATCCTTGCGT+GGG - chr4_3:1119074-1119093 Msa0623790:intron 45.0%
!! TATAGGCACTGGAATGATCG+AGG - chr4_3:1119153-1119172 Msa0623790:intron 45.0%
TGGCCTGGTCATTGAATGTT+TGG - chr4_3:1119294-1119313 Msa0623790:intron 45.0%
ACGGTGAGCATGAGCATTTA+TGG + chr4_3:1119594-1119613 None:intergenic 45.0%
CTAACCCCTCTTTCTTAGGT+TGG - chr4_3:1119997-1120016 Msa0623790:CDS 45.0%
GGTTCCAACCTAAGAAAGAG+GGG + chr4_3:1120004-1120023 None:intergenic 45.0%
GAGGTTCCAACCTAAGAAAG+AGG + chr4_3:1120006-1120025 None:intergenic 45.0%
!! CTTTCTTAGGTTGGAACCTC+CGG - chr4_3:1120006-1120025 Msa0623790:CDS 45.0%
GAGCCAAGCCTATTCTATCT+AGG - chr4_3:1120041-1120060 Msa0623790:CDS 45.0%
!!! TTTTTATTTTTTTTATTTCT+AGG + chr4_3:1117984-1118003 None:intergenic 5.0%
! CAGTGGTGACTCTTTTCCCA+TGG + chr4_3:1116369-1116388 None:intergenic 50.0%
CATGGGAAAAGAGTCACCAC+TGG - chr4_3:1116367-1116386 Msa0623790:intron 50.0%
ACCACTGGATTGTTTGTCGG+TGG - chr4_3:1116382-1116401 Msa0623790:intron 50.0%
CCACTGGATTGTTTGTCGGT+GGG - chr4_3:1116383-1116402 Msa0623790:intron 50.0%
GACGACGATCAATCCGCATA+TGG + chr4_3:1116502-1116521 None:intergenic 50.0%
GCAGCACCACCTATCAGTAT+TGG + chr4_3:1116657-1116676 None:intergenic 50.0%
!! ATACTGATAGGTGGTGCTGC+TGG - chr4_3:1116657-1116676 Msa0623790:intron 50.0%
TGCTTCACTATTGTTGCCGG+CGG + chr4_3:1116695-1116714 None:intergenic 50.0%
TCACACCCACCCAACACTAT+TGG - chr4_3:1116821-1116840 Msa0623790:intron 50.0%
! CCAAGTCCAATAGTGTTGGG+TGG + chr4_3:1116830-1116849 None:intergenic 50.0%
CCACCCAACACTATTGGACT+TGG - chr4_3:1116827-1116846 Msa0623790:intron 50.0%
CGCACCAAGTCCAATAGTGT+TGG + chr4_3:1116834-1116853 None:intergenic 50.0%
!! ACACTATTGGACTTGGTGCG+TGG - chr4_3:1116834-1116853 Msa0623790:intron 50.0%
TGGTGCGTGGATGTAAATGG+TGG - chr4_3:1116847-1116866 Msa0623790:CDS 50.0%
GGTGCGTGGATGTAAATGGT+GGG - chr4_3:1116848-1116867 Msa0623790:CDS 50.0%
GCTATCAGGTTTCCGCTATC+GGG + chr4_3:1116877-1116896 None:intergenic 50.0%
!! GATAGCGGAAACCTGATAGC+AGG - chr4_3:1116877-1116896 Msa0623790:CDS 50.0%
!! CGGTTTTGTGCGGTTGTGTT+AGG + chr4_3:1116958-1116977 None:intergenic 50.0%
! TGTTGAGGTGCCAACATAGC+AGG - chr4_3:1117333-1117352 Msa0623790:intron 50.0%
ATGGGGCTTAACAGAAGGGT+AGG + chr4_3:1117387-1117406 None:intergenic 50.0%
GGCAATGGGGCTTAACAGAA+GGG + chr4_3:1117391-1117410 None:intergenic 50.0%
TGGCAATGGGGCTTAACAGA+AGG + chr4_3:1117392-1117411 None:intergenic 50.0%
AAGATGGGTGGTCTGGCAAT+GGG + chr4_3:1117405-1117424 None:intergenic 50.0%
AGACTAGAAGATGGGTGGTC+TGG + chr4_3:1117412-1117431 None:intergenic 50.0%
AAGCTTCAAGTGGAACCCCA+AGG - chr4_3:1117752-1117771 Msa0623790:intron 50.0%
AGCTTCAAGTGGAACCCCAA+GGG - chr4_3:1117753-1117772 Msa0623790:intron 50.0%
TTCACTTCGGCTAGACCCTT+GGG + chr4_3:1117771-1117790 None:intergenic 50.0%
! GCTTCCATCGGTTGTAGTGA+AGG - chr4_3:1117823-1117842 Msa0623790:intron 50.0%
! TGTTTTTCTTTGGGCCCAGC+AGG + chr4_3:1118404-1118423 None:intergenic 50.0%
! CGGGTGCTGTAAGATTAAGG+GGG - chr4_3:1118436-1118455 Msa0623790:CDS 50.0%
GCTGTAAGATTAAGGGGGAC+TGG - chr4_3:1118441-1118460 Msa0623790:CDS 50.0%
CATCAGCAAGGGCCTTAAAG+AGG - chr4_3:1118663-1118682 Msa0623790:intron 50.0%
GGAATTGAGGCTGCCAGATA+TGG - chr4_3:1118756-1118775 Msa0623790:intron 50.0%
! CTTTTCGATGCATCCTTGCG+TGG - chr4_3:1119073-1119092 Msa0623790:intron 50.0%
TTGGCTCCTTGAAGCAACAC+CGG + chr4_3:1120028-1120047 None:intergenic 50.0%
CCCACCGACAAACAATCCAG+TGG + chr4_3:1116386-1116405 None:intergenic 55.0%
TTCACTATTGTTGCCGGCGG+CGG + chr4_3:1116692-1116711 None:intergenic 55.0%
! GCGTGGATGTAAATGGTGGG+TGG - chr4_3:1116851-1116870 Msa0623790:CDS 55.0%
TCGTTGGGCAACCTGCTATC+AGG + chr4_3:1116891-1116910 None:intergenic 55.0%
AGCCTCCTGCAAGACTCGTT+GGG + chr4_3:1116906-1116925 None:intergenic 55.0%
!! CCACACAAGCCGGTTTTGTG+CGG + chr4_3:1116968-1116987 None:intergenic 55.0%
!! CAAAACCGGCTTGTGTGGTG+AGG - chr4_3:1116970-1116989 Msa0623790:CDS 55.0%
AGATGGGTGGTCTGGCAATG+GGG + chr4_3:1117404-1117423 None:intergenic 55.0%
GAAGATGGGTGGTCTGGCAA+TGG + chr4_3:1117406-1117425 None:intergenic 55.0%
TCACTTCGGCTAGACCCTTG+GGG + chr4_3:1117770-1117789 None:intergenic 55.0%
GTTCACTTCGGCTAGACCCT+TGG + chr4_3:1117772-1117791 None:intergenic 55.0%
! GCAGAAGTGTGCTTAGACGC+AGG - chr4_3:1118184-1118203 Msa0623790:CDS 55.0%
GATGCATCCTTGCGTGGGAA+GGG - chr4_3:1119079-1119098 Msa0623790:intron 55.0%
GGGAAGGGTGACCCAATTGA+AGG - chr4_3:1119094-1119113 Msa0623790:intron 55.0%
!! GAACCTCCGGTGTTGCTTCA+AGG - chr4_3:1120019-1120038 Msa0623790:CDS 55.0%
AGTCAGGGTCTGCACCTCTT+GGG + chr4_3:1120175-1120194 None:intergenic 55.0%
TAGTCAGGGTCTGCACCTCT+TGG + chr4_3:1120176-1120195 None:intergenic 55.0%
! TGCGGATTGATCGTCGTCGG+TGG - chr4_3:1116504-1116523 Msa0623790:intron 60.0%
! GCGGATTGATCGTCGTCGGT+GGG - chr4_3:1116505-1116524 Msa0623790:intron 60.0%
!! CTGATAGGTGGTGCTGCTGG+CGG - chr4_3:1116660-1116679 Msa0623790:intron 60.0%
! AGTGTTGGGTGGGTGTGACG+AGG + chr4_3:1116819-1116838 None:intergenic 60.0%
!! AATGGTGGGTGGCCCGATAG+CGG - chr4_3:1116862-1116881 Msa0623790:CDS 60.0%
GGTTGCCCAACGAGTCTTGC+AGG - chr4_3:1116898-1116917 Msa0623790:CDS 60.0%
TGCCCAACGAGTCTTGCAGG+AGG - chr4_3:1116901-1116920 Msa0623790:CDS 60.0%
GAGCCTCCTGCAAGACTCGT+TGG + chr4_3:1116907-1116926 None:intergenic 60.0%
!! CCGCACAAAACCGGCTTGTG+TGG - chr4_3:1116965-1116984 Msa0623790:CDS 60.0%
CGATGCATCCTTGCGTGGGA+AGG - chr4_3:1119078-1119097 Msa0623790:intron 60.0%
GCTCCTTGAAGCAACACCGG+AGG + chr4_3:1120025-1120044 None:intergenic 60.0%
TGGGTCACCCTTCCCACGCA+AGG + chr4_3:1119089-1119108 None:intergenic 65.0%
CTGGCGGAAAATGCCGCCGC+CGG - chr4_3:1116676-1116695 Msa0623790:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 1115690 1120336 1115690 ID=Msa0623790;Name=Msa0623790
chr4_3 mRNA 1115690 1120336 1115690 ID=Msa0623790-mRNA-1;Parent=Msa0623790;Name=Msa0623790-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.71|0.75|0.87|0.85|0.62|8|267|340
chr4_3 exon 1115690 1116011 1115690 ID=Msa0623790-mRNA-1:exon:378;Parent=Msa0623790-mRNA-1
chr4_3 exon 1116841 1117043 1116841 ID=Msa0623790-mRNA-1:exon:377;Parent=Msa0623790-mRNA-1
chr4_3 exon 1117154 1117253 1117154 ID=Msa0623790-mRNA-1:exon:376;Parent=Msa0623790-mRNA-1
chr4_3 exon 1117977 1118071 1117977 ID=Msa0623790-mRNA-1:exon:375;Parent=Msa0623790-mRNA-1
chr4_3 exon 1118182 1118298 1118182 ID=Msa0623790-mRNA-1:exon:374;Parent=Msa0623790-mRNA-1
chr4_3 exon 1118387 1118542 1118387 ID=Msa0623790-mRNA-1:exon:373;Parent=Msa0623790-mRNA-1
chr4_3 exon 1119915 1120066 1119915 ID=Msa0623790-mRNA-1:exon:372;Parent=Msa0623790-mRNA-1
chr4_3 exon 1120192 1120336 1120192 ID=Msa0623790-mRNA-1:exon:371;Parent=Msa0623790-mRNA-1
chr4_3 CDS 1120192 1120336 1120192 ID=Msa0623790-mRNA-1:cds;Parent=Msa0623790-mRNA-1
chr4_3 CDS 1119915 1120066 1119915 ID=Msa0623790-mRNA-1:cds;Parent=Msa0623790-mRNA-1
chr4_3 CDS 1118387 1118542 1118387 ID=Msa0623790-mRNA-1:cds;Parent=Msa0623790-mRNA-1
chr4_3 CDS 1118182 1118298 1118182 ID=Msa0623790-mRNA-1:cds;Parent=Msa0623790-mRNA-1
chr4_3 CDS 1117977 1118071 1117977 ID=Msa0623790-mRNA-1:cds;Parent=Msa0623790-mRNA-1
chr4_3 CDS 1117154 1117253 1117154 ID=Msa0623790-mRNA-1:cds;Parent=Msa0623790-mRNA-1
chr4_3 CDS 1116841 1117043 1116841 ID=Msa0623790-mRNA-1:cds;Parent=Msa0623790-mRNA-1
chr4_3 CDS 1115957 1116011 1115957 ID=Msa0623790-mRNA-1:cds;Parent=Msa0623790-mRNA-1
chr4_3 three_prime_UTR 1115690 1115956 1115690 ID=Msa0623790-mRNA-1:three_prime_utr;Parent=Msa0623790-mRNA-1
Gene Sequence

>Msa0623790

TTTCTAGATATTTGTCTATCACGTTATCGTTTAAAAAAAATTGAGGCTGGAACTCCAATTGGTGCAATTGGAGCTCATAGTATTGGAGAACCTGGGACTCAGATGACTTTGAAAACTTTTCACTTTGCTGGGGTTGCAAGCATGAATGTTACACTTGGAGTTCCTCGCATCATAGAAATAATAAATGGAGCATCCAATATTAAGACACCGATCATTACTGCAATACTTGAGAGGGATGATAATGCAAAAACTGCAAAGATAGTGAAGGGATGCATAGAAAAAACAAATTTAGGCCAGGTTGCGAAGAGTATTAAAGTTGTTTACTCTAACAAATTAGCAGCAGTTTTTATCTCGCTGGACATGGGCATAATTGAAAAGGCAGGACTGAATATAGATGCCAATATTGTGAAAGAATCAATTTTGCAGACTGGAAAACTGAAGTTGAAGCCAGAGAATGTTAAGATTTTGGATATTAAAAAGCTTCAAGTGGAACCCCAAGGGTCTAGCCGAAGTGAACTCCTTTTTCAACTTAATAATCTCAAAAATTTGCTTCCATCGGTTGTAGTGAAGGGAGTTAAAACTGTCGAACGAACTGTCCTAGAAATAAAAAAAATAAAAACAAATGATGGTAAAGAATCTGAGAAGTACACATTACTGGCGGAAGGATATGGTATCATAGATCAGATACAGTATACAATGAAACAGCATGGAATGAGCATAGACGTACGCCATATTATGCTTCTAGCAGATATGATGACTGTCAGGGGTCAAGTCCTTGGAATGACAAGACATGGAATTCAAAAGATGGGCAGAAGTGCATTAATGCTTGCATCATTTGAGAGTTCAACAGACTATCTTTTCGATGCATCCTTGCGTGGGAAGGGTGACCCAATTGAAGGAGTGAGTGATTGCATAATCATGGGTAAACCTATTCATATAGGCACTGGAATGATCGAGGTCAAACAAAGGTTGGAACCTCCGGTGTTGCTTCAAGGAGCCAAGCCTATTCTATCTAGGGTTTGA

Protein sequence

>Msa0623790

FLDICLSRYRLKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIIEIINGASNIKTPIITAILERDDNAKTAKIVKGCIEKTNLGQVAKSIKVVYSNKLAAVFISLDMGIIEKAGLNIDANIVKESILQTGKLKLKPENVKILDIKKLQVEPQGSSRSELLFQLNNLKNLLPSVVVKGVKTVERTVLEIKKIKTNDGKESEKYTLLAEGYGIIDQIQYTMKQHGMSIDVRHIMLLADMMTVRGQVLGMTRHGIQKMGRSALMLASFESSTDYLFDASLRGKGDPIEGVSDCIIMGKPIHIGTGMIEVKQRLEPPVLLQGAKPILSRV*