AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0497490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0497490 MtrunA17_Chr3g0092521 99.615 260 1 0 1 260 1 260 0.0 513
Msa0497490 MtrunA17_Chr4g0060621 77.376 221 47 1 1 221 1 218 6.76e-125 355
Msa0497490 MtrunA17_Chr4g0064221 50.417 240 104 3 3 232 100 334 2.45e-78 241
Msa0497490 MtrunA17_Chr6g0487861 48.235 85 43 1 60 143 2 86 2.56e-23 90.5
Msa0497490 MtrunA17_Chr6g0487691 48.235 85 43 1 60 143 2 86 2.56e-23 90.5
Msa0497490 MtrunA17_Chr6g0487501 40.299 134 67 3 88 209 23 155 9.48e-22 88.6
Msa0497490 MtrunA17_Chr2g0299511 23.265 245 129 7 29 222 14 250 3.31e-12 65.1
Msa0497490 MtrunA17_Chr2g0299521 30.345 145 77 4 29 163 55 185 1.45e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0497490 AT1G18800.1 73.333 225 52 3 1 221 1 221 4.32e-116 333
Msa0497490 AT1G74560.3 77.436 195 42 2 20 212 22 216 1.15e-107 312
Msa0497490 AT1G74560.1 71.552 232 59 3 20 249 22 248 1.32e-107 311

Find 87 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGTCCATTCCCGATTTC+TGG 0.148537 3_4:-30682282 Msa0497490:CDS
TGTGCTTTGAAGGTGATTTC+TGG 0.176844 3_4:-30678812 Msa0497490:three_prime_UTR
AAATGATCAAGGATGATTTA+TGG 0.278723 3_4:-30680267 Msa0497490:CDS
GGAGTATCTTAGTGGTCTTT+AGG 0.285414 3_4:-30678896 Msa0497490:three_prime_UTR
GAGTATCTTAGTGGTCTTTA+GGG 0.295373 3_4:-30678895 Msa0497490:three_prime_UTR
CCTTCAAAGCACAATAAATA+AGG 0.296384 3_4:+30678822 None:intergenic
TCATCCTCCTCTGCTTCATC+AGG 0.316616 3_4:+30680088 None:intergenic
CCTTATTTATTGTGCTTTGA+AGG 0.317347 3_4:-30678822 Msa0497490:three_prime_UTR
TTGAAATAATTGAGCGGATT+CGG 0.342504 3_4:+30680244 None:intergenic
TCTCTCCATTGAAAAGTTGC+AGG 0.343507 3_4:-30683038 Msa0497490:CDS
TTACCGCCACACCCATAAAA+TGG 0.350698 3_4:-30681104 Msa0497490:CDS
ACTACTATATGGTTCAATAT+AGG 0.369922 3_4:+30678732 None:intergenic
TACCGCAGTTAGCCAGAAAT+CGG 0.377960 3_4:+30682270 None:intergenic
AGCGAGCTGCCTCTGATATC+AGG 0.378291 3_4:-30680916 Msa0497490:intron
TTCTCATGACTAACTCCATT+GGG 0.391028 3_4:+30680950 None:intergenic
CACCGAGCAGAAAGATGAAA+TGG 0.393738 3_4:-30680456 Msa0497490:CDS
GCGTGAATGAGGGAAGTGTT+AGG 0.399048 3_4:+30683207 None:intergenic
GAAGTTGAAAGTTTCTGAAA+AGG 0.400020 3_4:-30683095 Msa0497490:CDS
GCTTTGTTGTTCCTTCTTCA+AGG 0.405290 3_4:+30681127 None:intergenic
GATAAAATCCGATGTATCAT+TGG 0.406601 3_4:+30678760 None:intergenic
TGCTTTAAAATAGCAATACT+TGG 0.414805 3_4:-30678949 Msa0497490:three_prime_UTR
GATCATAAAGATGTTAAATC+AGG 0.415444 3_4:-30681353 Msa0497490:CDS
AAGTTGAAAGTTTCTGAAAA+GGG 0.417210 3_4:-30683094 Msa0497490:CDS
GAAAGACCAAGGTTGGCTAT+TGG 0.423156 3_4:-30678866 Msa0497490:three_prime_UTR
TTTCAACTTCTTAGACTTGT+CGG 0.425948 3_4:+30683108 None:intergenic
ACCCATTTCATCTTTCTGCT+CGG 0.435207 3_4:+30680454 None:intergenic
TTGAAGAAACAGAAGATGTT+GGG 0.442985 3_4:+30683140 None:intergenic
TGAATCCTCAAAATAGGGAT+TGG 0.446308 3_4:+30681173 None:intergenic
CTTCTCATGACTAACTCCAT+TGG 0.461543 3_4:+30680949 None:intergenic
ATCTTCTGTTTCTTCAACCA+TGG 0.462538 3_4:-30683134 Msa0497490:exon
TTCAAGAGATCACCAAGAAC+AGG 0.466713 3_4:+30682122 None:intergenic
CGTGAATGAGGGAAGTGTTA+GGG 0.473720 3_4:+30683208 None:intergenic
AGCAGAAGTACAATGAAGTA+AGG 0.474420 3_4:-30682336 Msa0497490:CDS
GTTGAAGAAACAGAAGATGT+TGG 0.474536 3_4:+30683139 None:intergenic
ATGAATGCAGTTTCTTTACC+TGG 0.476177 3_4:-30680487 Msa0497490:intron
TTATTATAGGAGTATCTTAG+TGG 0.477899 3_4:-30678904 Msa0497490:three_prime_UTR
AAATAAGGTTTACGCCCAAA+GGG 0.488877 3_4:+30678837 None:intergenic
TAACAACGGTGCGCGCGTGC+GGG 0.489280 3_4:+30683288 None:intergenic
CACAACTTTACAGTACCAAC+CGG 0.490777 3_4:-30678654 Msa0497490:three_prime_UTR
CACAAACTCTCCACTGCGCT+AGG 0.496750 3_4:-30683171 Msa0497490:five_prime_UTR
CTAACAACGGTGCGCGCGTG+CGG 0.503839 3_4:+30683287 None:intergenic
GTACAATGAAGTAAGGAAAC+CGG 0.504777 3_4:-30682329 Msa0497490:CDS
GAGTTAGTCATGAGAAGAAA+GGG 0.511551 3_4:-30680943 Msa0497490:CDS
TAAGCATTTAATCTCTCTTG+AGG 0.513660 3_4:-30681381 Msa0497490:CDS
TGTTGTTCCTTCTTCAAGGA+AGG 0.519890 3_4:+30681131 None:intergenic
GGAGTTAGTCATGAGAAGAA+AGG 0.520004 3_4:-30680944 Msa0497490:CDS
TAAATAAGGTTTACGCCCAA+AGG 0.532363 3_4:+30678836 None:intergenic
CACACCCATAAAATGGAAAG+AGG 0.533883 3_4:-30681097 Msa0497490:CDS
ACCGCAGTTAGCCAGAAATC+GGG 0.534071 3_4:+30682271 None:intergenic
CTGCTCGGTGTCACAAAACC+AGG 0.534635 3_4:+30680469 None:intergenic
AATTCAAGATGAGATTGAAA+AGG 0.541675 3_4:-30683014 Msa0497490:intron
ACCGAGCAGAAAGATGAAAT+GGG 0.553075 3_4:-30680455 Msa0497490:CDS
GGATGATGAAAGACCAAGGT+TGG 0.555399 3_4:-30678873 Msa0497490:three_prime_UTR
CTTAGACTTGTCGGCCACCA+TGG 0.561301 3_4:+30683117 None:intergenic
CATCCTCCTCTGCTTCATCA+GGG 0.561342 3_4:+30680089 None:intergenic
GCATTTAATCTCTCTTGAGG+TGG 0.569987 3_4:-30681378 Msa0497490:CDS
CTTGAATGAAGAAGATCAGA+AGG 0.578793 3_4:-30682105 Msa0497490:intron
AACATGAAGGGCATTCCCAA+TGG 0.580353 3_4:-30680965 Msa0497490:intron
TTCTGTTTCTTCAACCATGG+TGG 0.582218 3_4:-30683131 Msa0497490:exon
TGAAGATGACGATGATCAAG+AGG 0.582324 3_4:-30679008 Msa0497490:CDS
GGACCCTGATGAAGCAGAGG+AGG 0.584391 3_4:-30680092 Msa0497490:CDS
CATAAAATGGAAAGAGGGCA+AGG 0.586031 3_4:-30681091 Msa0497490:intron
GTAGATTGCTGAAATGATCA+AGG 0.588612 3_4:-30680278 Msa0497490:intron
GGAAAACCAATAGCCAACCT+TGG 0.610576 3_4:+30678860 None:intergenic
TCAAGATACCAATGATACAT+CGG 0.611283 3_4:-30678768 Msa0497490:three_prime_UTR
AATAAGGTTTACGCCCAAAG+GGG 0.612679 3_4:+30678838 None:intergenic
GGAGGACCCTGATGAAGCAG+AGG 0.616842 3_4:-30680095 Msa0497490:CDS
TAACACCAACCTGATATCAG+AGG 0.617428 3_4:+30680907 None:intergenic
TCATTGCGCTTGTCATACAC+CGG 0.617462 3_4:+30682310 None:intergenic
GAGGAGGATGATGATGAAGC+TGG 0.618117 3_4:-30680076 Msa0497490:CDS
ACAAACTCTCCACTGCGCTA+GGG 0.625138 3_4:-30683170 Msa0497490:five_prime_UTR
AGTTAGCCAGAAATCGGGAA+TGG 0.630002 3_4:+30682276 None:intergenic
GGTTTCAAACCCTAGCGCAG+TGG 0.634230 3_4:+30683161 None:intergenic
ACACCCATAAAATGGAAAGA+GGG 0.634604 3_4:-30681096 Msa0497490:CDS
AGTATCTTAGTGGTCTTTAG+GGG 0.638994 3_4:-30678894 Msa0497490:three_prime_UTR
ATAAGGTTTACGCCCAAAGG+GGG 0.649454 3_4:+30678839 None:intergenic
TCCCGATTTCTGGCTAACTG+CGG 0.657384 3_4:-30682272 Msa0497490:intron
ATGGTAACAGATCAATGAGG+AGG 0.670015 3_4:-30682383 Msa0497490:intron
ACACTGTTGAAATAATTGAG+CGG 0.677153 3_4:+30680238 None:intergenic
GAGAACGCTGAGGAGATCGA+CGG 0.680614 3_4:-30683070 Msa0497490:CDS
AGAGATCACCAAGAACAGGA+TGG 0.685499 3_4:+30682126 None:intergenic
TAGGGGATGATGAAAGACCA+AGG 0.689189 3_4:-30678877 Msa0497490:three_prime_UTR
AGAGGATGACGATGATGACG+AGG 0.694107 3_4:-30678990 Msa0497490:CDS
AATGGGTGACATTCATGATG+AGG 0.701668 3_4:-30680438 Msa0497490:intron
TGAAAAGGGTGAGAACGCTG+AGG 0.720444 3_4:-30683080 Msa0497490:CDS
TGATGATGAAGCTGGTGATG+CGG 0.730644 3_4:-30680068 Msa0497490:intron
ATTATGGTAACAGATCAATG+AGG 0.777064 3_4:-30682386 Msa0497490:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAGAAAAGAAAAAT+TGG + chr3_4:30679005-30679024 None:intergenic 10.0%
!! TAAAATGTAATTAAATTTAG+TGG - chr3_4:30679100-30679119 Msa0497490:intron 10.0%
!! TTTAGTAAAATAGTTAATTT+GGG - chr3_4:30682168-30682187 Msa0497490:intron 10.0%
!! AATTATACATACATATATTA+TGG - chr3_4:30682897-30682916 Msa0497490:intron 10.0%
!!! ATTTATTTTAAGGTTATTAT+AGG - chr3_4:30683073-30683092 Msa0497490:CDS 10.0%
!! AATTTAGTGGAATTAAATTA+TGG - chr3_4:30679113-30679132 Msa0497490:intron 15.0%
!! ATTTAGTGGAATTAAATTAT+GGG - chr3_4:30679114-30679133 Msa0497490:intron 15.0%
!!! GTAAATTTTAGTTAAGTAAA+TGG - chr3_4:30679283-30679302 Msa0497490:intron 15.0%
!!! GTTTCTTTATGTTTTAATTT+TGG - chr3_4:30679751-30679770 Msa0497490:intron 15.0%
!! TCAAGATTAAAATCTTAAAT+TGG + chr3_4:30680495-30680514 None:intergenic 15.0%
!!! TTGTATTTTGCTTAAATTAA+AGG - chr3_4:30680748-30680767 Msa0497490:intron 15.0%
!! AATTAATTATTTGTTCCATT+TGG + chr3_4:30681472-30681491 None:intergenic 15.0%
!! CAAAAAAGGAAAAAAATTAA+TGG + chr3_4:30681959-30681978 None:intergenic 15.0%
!! CTTTAGTAAAATAGTTAATT+TGG - chr3_4:30682167-30682186 Msa0497490:intron 15.0%
!!! TTAGTAAAATAGTTAATTTG+GGG - chr3_4:30682169-30682188 Msa0497490:intron 15.0%
!! ATGTATAATTATAAATGCAA+AGG + chr3_4:30682887-30682906 None:intergenic 15.0%
!! TTTAGTGGAATTAAATTATG+GGG - chr3_4:30679115-30679134 Msa0497490:intron 20.0%
!!! TTTTGGTAGGAAAAATTAAT+CGG - chr3_4:30679444-30679463 Msa0497490:intron 20.0%
!!! TTGCGATTTTTTTTTTGTAT+AGG - chr3_4:30679476-30679495 Msa0497490:intron 20.0%
!!! AATATCCATAATTTCCTTTT+TGG + chr3_4:30679502-30679521 None:intergenic 20.0%
!! AGGAAATTATGGATATTTAT+AGG - chr3_4:30679505-30679524 Msa0497490:intron 20.0%
!! GGAAATTATGGATATTTATA+GGG - chr3_4:30679506-30679525 Msa0497490:intron 20.0%
!!! AATGCAATTTAATTTGATTC+TGG - chr3_4:30679579-30679598 Msa0497490:intron 20.0%
!! TTTAACAACACAATAACTAA+CGG + chr3_4:30679795-30679814 None:intergenic 20.0%
!! TCAAACAATATTCAAAGTAA+TGG + chr3_4:30680058-30680077 None:intergenic 20.0%
!!! TGATAAAGTTCACTTTTAAA+CGG + chr3_4:30680223-30680242 None:intergenic 20.0%
!!! TGATTCATTATGAAGTATTT+TGG - chr3_4:30680296-30680315 Msa0497490:intron 20.0%
!! AAAATGAAAAAGAGAAAAAG+TGG + chr3_4:30680960-30680979 None:intergenic 20.0%
!! AACATTATCTTTAAACATGA+AGG - chr3_4:30681012-30681031 Msa0497490:intron 20.0%
!! ACATTATCTTTAAACATGAA+GGG - chr3_4:30681013-30681032 Msa0497490:intron 20.0%
!!! AATCACAAGTTTTTCAAAAA+AGG + chr3_4:30681973-30681992 None:intergenic 20.0%
!! TAACCAAAAAGTAAGTTTAA+GGG + chr3_4:30682462-30682481 None:intergenic 20.0%
!! TTAACCAAAAAGTAAGTTTA+AGG + chr3_4:30682463-30682482 None:intergenic 20.0%
!!! GTTAGTTATGAATAGATTTT+GGG + chr3_4:30682493-30682512 None:intergenic 20.0%
!!! TGTTAGTTATGAATAGATTT+TGG + chr3_4:30682494-30682513 None:intergenic 20.0%
!! TCATATATCTAGACATATAA+TGG + chr3_4:30682588-30682607 None:intergenic 20.0%
!! TACTCCTTAATATAAATGTT+CGG - chr3_4:30682614-30682633 Msa0497490:intron 20.0%
!!! GTCTAATTGAATTTAGAATA+GGG + chr3_4:30682668-30682687 None:intergenic 20.0%
!!! AGTCTAATTGAATTTAGAAT+AGG + chr3_4:30682669-30682688 None:intergenic 20.0%
!!! ACTACATTTTAACTACTATA+TGG + chr3_4:30683272-30683291 None:intergenic 20.0%
!! AAGTTGAAAGTTTCTGAAAA+GGG - chr3_4:30678896-30678915 Msa0497490:three_prime_UTR 25.0%
! AATTCAAGATGAGATTGAAA+AGG - chr3_4:30678976-30678995 Msa0497490:exon 25.0%
! TAAATTGAATTCTACAACAG+AGG + chr3_4:30679070-30679089 None:intergenic 25.0%
! AAAGTAAAACTTCTGTATGT+TGG + chr3_4:30679203-30679222 None:intergenic 25.0%
! TAAGACTAAAAACGAAATGT+TGG + chr3_4:30679322-30679341 None:intergenic 25.0%
!!! GTTTTTAGCATCTTTTTCAT+CGG - chr3_4:30679418-30679437 Msa0497490:intron 25.0%
!!! TTTTTTTGTATAGGCCAAAA+AGG - chr3_4:30679485-30679504 Msa0497490:intron 25.0%
! CAGAATTCAGATTAAGTAAT+AGG + chr3_4:30679533-30679552 None:intergenic 25.0%
! TAATTTGATTCTGGTGATTA+TGG - chr3_4:30679588-30679607 Msa0497490:intron 25.0%
!!! TTTGGTTTTGTTTTTATCGT+TGG - chr3_4:30679769-30679788 Msa0497490:intron 25.0%
!!! CTCTTTTTCATATAAAGTTC+TGG + chr3_4:30679983-30680002 None:intergenic 25.0%
!! ATTCCTATGTGTATCTATTT+TGG - chr3_4:30680243-30680262 Msa0497490:CDS 25.0%
! AAATCAAATGAGAAGAAAAG+TGG + chr3_4:30680361-30680380 None:intergenic 25.0%
! TACTTTAGTCACATATATGA+TGG - chr3_4:30680544-30680563 Msa0497490:intron 25.0%
! GATCATAAAGATGTTAAATC+AGG - chr3_4:30680637-30680656 Msa0497490:intron 25.0%
!!! AGTTTTGAATCCTCAAAATA+GGG + chr3_4:30680825-30680844 None:intergenic 25.0%
!!! AAGTTTTGAATCCTCAAAAT+AGG + chr3_4:30680826-30680845 None:intergenic 25.0%
! CTAACATATGAAACTAGTAA+AGG + chr3_4:30681206-30681225 None:intergenic 25.0%
! ATGCAACAGAAAACAAATTA+AGG + chr3_4:30681660-30681679 None:intergenic 25.0%
! AAATGATCAAGGATGATTTA+TGG - chr3_4:30681723-30681742 Msa0497490:intron 25.0%
! ACATGCAACAAAAAATTGAT+GGG + chr3_4:30682030-30682049 None:intergenic 25.0%
! AACATGCAACAAAAAATTGA+TGG + chr3_4:30682031-30682050 None:intergenic 25.0%
!!! ATCAATTTTTTGTTGCATGT+TGG - chr3_4:30682030-30682049 Msa0497490:intron 25.0%
! TATTCAAAGAGGAAGAAAAA+TGG - chr3_4:30682130-30682149 Msa0497490:CDS 25.0%
! ATTCAAAGAGGAAGAAAAAT+GGG - chr3_4:30682131-30682150 Msa0497490:CDS 25.0%
! AAGTAACTCTTATGAAGAAT+TGG - chr3_4:30682253-30682272 Msa0497490:intron 25.0%
! AGTAACTCTTATGAAGAATT+GGG - chr3_4:30682254-30682273 Msa0497490:intron 25.0%
! TATTTGAAAACACTGGTATT+AGG + chr3_4:30682284-30682303 None:intergenic 25.0%
! AAAAGTAAGTTTAAGGGATT+AGG + chr3_4:30682456-30682475 None:intergenic 25.0%
!!! AATCCCTTAAACTTACTTTT+TGG - chr3_4:30682456-30682475 Msa0497490:intron 25.0%
! GTTTATAAAACTAGATATGC+AGG + chr3_4:30682555-30682574 None:intergenic 25.0%
! ACTCCTTAATATAAATGTTC+GGG - chr3_4:30682615-30682634 Msa0497490:intron 25.0%
! TAACCCGAACATTTATATTA+AGG + chr3_4:30682621-30682640 None:intergenic 25.0%
!!! TGCTTTAAAATAGCAATACT+TGG - chr3_4:30683041-30683060 Msa0497490:CDS 25.0%
!!! TTATTATAGGAGTATCTTAG+TGG - chr3_4:30683086-30683105 Msa0497490:CDS 25.0%
! ACTACTATATGGTTCAATAT+AGG + chr3_4:30683261-30683280 None:intergenic 25.0%
TTGAAGAAACAGAAGATGTT+GGG + chr3_4:30678853-30678872 None:intergenic 30.0%
TTTCAACTTCTTAGACTTGT+CGG + chr3_4:30678885-30678904 None:intergenic 30.0%
! GAAGTTGAAAGTTTCTGAAA+AGG - chr3_4:30678895-30678914 Msa0497490:three_prime_UTR 30.0%
! AATTTCCTGCAACTTTTCAA+TGG + chr3_4:30678960-30678979 None:intergenic 30.0%
AAACTTAGGGTAACATTGTT+TGG - chr3_4:30679147-30679166 Msa0497490:intron 30.0%
ACGAAATGTTGGATATTCAT+AGG + chr3_4:30679311-30679330 None:intergenic 30.0%
TACTACATGACTAAAAGTTC+TGG + chr3_4:30679389-30679408 None:intergenic 30.0%
!! ATCTTTTTCATCGGCATTTT+TGG - chr3_4:30679427-30679446 Msa0497490:intron 30.0%
ATAGGCCAAAAAGGAAATTA+TGG - chr3_4:30679494-30679513 Msa0497490:intron 30.0%
ATTATGGTAACAGATCAATG+AGG - chr3_4:30679604-30679623 Msa0497490:intron 30.0%
GAATAGCTATGGTAAAGTTA+TGG + chr3_4:30679938-30679957 None:intergenic 30.0%
AATAAACAGAACCAAAAACG+AGG + chr3_4:30680033-30680052 None:intergenic 30.0%
AGTCCAAAATAGATACACAT+AGG + chr3_4:30680249-30680268 None:intergenic 30.0%
AAATGAGAAGAAAAGTGGTT+GGG + chr3_4:30680356-30680375 None:intergenic 30.0%
TAAGCATTTAATCTCTCTTG+AGG - chr3_4:30680609-30680628 Msa0497490:intron 30.0%
CTAATGAATTATGCACTGAA+GGG + chr3_4:30680696-30680715 None:intergenic 30.0%
ACTAATGAATTATGCACTGA+AGG + chr3_4:30680697-30680716 None:intergenic 30.0%
! GTGTTTTGCAAATCTCAATT+AGG - chr3_4:30680715-30680734 Msa0497490:intron 30.0%
!! TGGTGTTAAAAGTGTTTCTA+TGG - chr3_4:30681098-30681117 Msa0497490:CDS 30.0%
!! CTTGTTGTTCATGTATAAGT+TGG - chr3_4:30681230-30681249 Msa0497490:intron 30.0%
TAACCATACCATGTTTGTTT+GGG + chr3_4:30681298-30681317 None:intergenic 30.0%
TTAACCATACCATGTTTGTT+TGG + chr3_4:30681299-30681318 None:intergenic 30.0%
! TCATGATTGGTGATATAGTT+TGG - chr3_4:30681389-30681408 Msa0497490:CDS 30.0%
ATCTTCTTGAAAATGCCAAA+TGG - chr3_4:30681454-30681473 Msa0497490:intron 30.0%
CATTTCAGCAATCTACAATT+TGG + chr3_4:30681708-30681727 None:intergenic 30.0%
! TTGAAATAATTGAGCGGATT+CGG + chr3_4:30681749-30681768 None:intergenic 30.0%
ACACTGTTGAAATAATTGAG+CGG + chr3_4:30681755-30681774 None:intergenic 30.0%
TTAGATACAAGTATAGAGAG+TGG + chr3_4:30681852-30681871 None:intergenic 30.0%
CTCTCTATACTTGTATCTAA+TGG - chr3_4:30681852-30681871 Msa0497490:intron 30.0%
!!! CTTGATTTGGGTAAGATTTT+GGG - chr3_4:30682098-30682117 Msa0497490:intron 30.0%
TTCAAAGAGGAAGAAAAATG+GGG - chr3_4:30682132-30682151 Msa0497490:CDS 30.0%
!! TGTCATTTGATTCTAAGATC+TGG - chr3_4:30682208-30682227 Msa0497490:intron 30.0%
ATAAAACTAGATATGCAGGT+GGG + chr3_4:30682551-30682570 None:intergenic 30.0%
TATAAAACTAGATATGCAGG+TGG + chr3_4:30682552-30682571 None:intergenic 30.0%
CTTCTCTTTACATATCATCT+AGG - chr3_4:30682723-30682742 Msa0497490:intron 30.0%
! TATAAATGCAAAGGCACAAA+AGG + chr3_4:30682878-30682897 None:intergenic 30.0%
CCTTCAAAGCACAATAAATA+AGG + chr3_4:30683171-30683190 None:intergenic 30.0%
! CCTTATTTATTGTGCTTTGA+AGG - chr3_4:30683168-30683187 Msa0497490:five_prime_UTR 30.0%
TCAAGATACCAATGATACAT+CGG - chr3_4:30683222-30683241 Msa0497490:five_prime_UTR 30.0%
GATAAAATCCGATGTATCAT+TGG + chr3_4:30683233-30683252 None:intergenic 30.0%
!!! AGGGTTTTGAGGGTTTATAT+TGG + chr3_4:30678766-30678785 None:intergenic 35.0%
GTTGAAGAAACAGAAGATGT+TGG + chr3_4:30678854-30678873 None:intergenic 35.0%
! ATCTTCTGTTTCTTCAACCA+TGG - chr3_4:30678856-30678875 Msa0497490:three_prime_UTR 35.0%
!! TGGGGTTGATGTTTAAACTT+AGG - chr3_4:30679133-30679152 Msa0497490:intron 35.0%
!! GGGGTTGATGTTTAAACTTA+GGG - chr3_4:30679134-30679153 Msa0497490:intron 35.0%
!! TGTTTGGTTCACCCTAATTT+TGG - chr3_4:30679163-30679182 Msa0497490:intron 35.0%
!! GTTTGGTTCACCCTAATTTT+GGG - chr3_4:30679164-30679183 Msa0497490:intron 35.0%
! TACATGACTAAAAGTTCTGG+CGG + chr3_4:30679386-30679405 None:intergenic 35.0%
!!! TTTTCATCGGCATTTTTGGT+AGG - chr3_4:30679431-30679450 Msa0497490:intron 35.0%
! AGCAGAAGTACAATGAAGTA+AGG - chr3_4:30679654-30679673 Msa0497490:intron 35.0%
GTACAATGAAGTAAGGAAAC+CGG - chr3_4:30679661-30679680 Msa0497490:intron 35.0%
CTTGAATGAAGAAGATCAGA+AGG - chr3_4:30679885-30679904 Msa0497490:intron 35.0%
GAATAGCACTTGAATAGCTA+TGG + chr3_4:30679949-30679968 None:intergenic 35.0%
! GTGTAATAACTCCTCGTTTT+TGG - chr3_4:30680019-30680038 Msa0497490:intron 35.0%
TACGTTCATACTGTGATCAT+TGG + chr3_4:30680328-30680347 None:intergenic 35.0%
CAAATGAGAAGAAAAGTGGT+TGG + chr3_4:30680357-30680376 None:intergenic 35.0%
TGAATCCTCAAAATAGGGAT+TGG + chr3_4:30680820-30680839 None:intergenic 35.0%
! ACTTTTACCTTCCTTGAAGA+AGG - chr3_4:30680852-30680871 Msa0497490:intron 35.0%
ACACCCATAAAATGGAAAGA+GGG - chr3_4:30680894-30680913 Msa0497490:intron 35.0%
! TTGCCCTCTTTCCATTTTAT+GGG + chr3_4:30680900-30680919 None:intergenic 35.0%
AGAGAAAAAGTGGATAGATG+AGG + chr3_4:30680950-30680969 None:intergenic 35.0%
TTCTCATGACTAACTCCATT+GGG + chr3_4:30681043-30681062 None:intergenic 35.0%
GAGTTAGTCATGAGAAGAAA+GGG - chr3_4:30681047-30681066 Msa0497490:intron 35.0%
! AGTGTTTCTATGGAAGACAT+TGG - chr3_4:30681108-30681127 Msa0497490:CDS 35.0%
TGGAAGACATTGGAAAACAA+AGG - chr3_4:30681118-30681137 Msa0497490:CDS 35.0%
! TGAATTTCCAGAGTTTTGCA+TGG - chr3_4:30681254-30681273 Msa0497490:intron 35.0%
ATTTGTGTCCCAAACAAACA+TGG - chr3_4:30681287-30681306 Msa0497490:intron 35.0%
ATGATGAATGAGCTCATGAT+TGG - chr3_4:30681376-30681395 Msa0497490:CDS 35.0%
ATGAATGCAGTTTCTTTACC+TGG - chr3_4:30681503-30681522 Msa0497490:intron 35.0%
GTAGATTGCTGAAATGATCA+AGG - chr3_4:30681712-30681731 Msa0497490:intron 35.0%
ATACAAGTATAGAGAGTGGT+AGG + chr3_4:30681848-30681867 None:intergenic 35.0%
GTAGTTGATTACAATGTCAC+AGG - chr3_4:30681874-30681893 Msa0497490:intron 35.0%
AATATGCAGGCAATACTTCA+CGG + chr3_4:30682004-30682023 None:intergenic 35.0%
!! AATTGATGGGCTAAATATGC+AGG + chr3_4:30682017-30682036 None:intergenic 35.0%
!!! GCTTGATTTGGGTAAGATTT+TGG - chr3_4:30682097-30682116 Msa0497490:intron 35.0%
ATGTTCTGCGATATGCTATT+TGG - chr3_4:30682342-30682361 Msa0497490:CDS 35.0%
TACGAAATGTTGTCGAATAG+AGG - chr3_4:30682365-30682384 Msa0497490:CDS 35.0%
CAAGTTCCAAATGTTCTCAT+TGG - chr3_4:30682936-30682955 Msa0497490:intron 35.0%
GAGTATCTTAGTGGTCTTTA+GGG - chr3_4:30683095-30683114 Msa0497490:CDS 35.0%
AGTATCTTAGTGGTCTTTAG+GGG - chr3_4:30683096-30683115 Msa0497490:CDS 35.0%
AAATAAGGTTTACGCCCAAA+GGG + chr3_4:30683156-30683175 None:intergenic 35.0%
TAAATAAGGTTTACGCCCAA+AGG + chr3_4:30683157-30683176 None:intergenic 35.0%
TGTGTGTGTGTGTCTAACAA+CGG + chr3_4:30678719-30678738 None:intergenic 40.0%
! TTTTCTTCGAGCGTGAATGA+GGG + chr3_4:30678796-30678815 None:intergenic 40.0%
! TTCTGTTTCTTCAACCATGG+TGG - chr3_4:30678859-30678878 Msa0497490:three_prime_UTR 40.0%
TCTCTCCATTGAAAAGTTGC+AGG - chr3_4:30678952-30678971 Msa0497490:three_prime_UTR 40.0%
CTAGGGATCACCCAAAATTA+GGG + chr3_4:30679177-30679196 None:intergenic 40.0%
CTTCTGTATGTTGGATCCTA+GGG + chr3_4:30679194-30679213 None:intergenic 40.0%
ACTTCTGTATGTTGGATCCT+AGG + chr3_4:30679195-30679214 None:intergenic 40.0%
ATGGTAACAGATCAATGAGG+AGG - chr3_4:30679607-30679626 Msa0497490:intron 40.0%
!! TTTTTGAGCCATCCTGTTCT+TGG - chr3_4:30679856-30679875 Msa0497490:intron 40.0%
TTCAAGAGATCACCAAGAAC+AGG + chr3_4:30679871-30679890 None:intergenic 40.0%
GCATTTAATCTCTCTTGAGG+TGG - chr3_4:30680612-30680631 Msa0497490:intron 40.0%
TGTTGTTCCTTCTTCAAGGA+AGG + chr3_4:30680862-30680881 None:intergenic 40.0%
!! GCTTTGTTGTTCCTTCTTCA+AGG + chr3_4:30680866-30680885 None:intergenic 40.0%
! TTTCCATTTTATGGGTGTGG+CGG + chr3_4:30680892-30680911 None:intergenic 40.0%
! CTCTTTCCATTTTATGGGTG+TGG + chr3_4:30680895-30680914 None:intergenic 40.0%
CACACCCATAAAATGGAAAG+AGG - chr3_4:30680893-30680912 Msa0497490:intron 40.0%
! CTTGCCCTCTTTCCATTTTA+TGG + chr3_4:30680901-30680920 None:intergenic 40.0%
CATAAAATGGAAAGAGGGCA+AGG - chr3_4:30680899-30680918 Msa0497490:intron 40.0%
CTTCTCATGACTAACTCCAT+TGG + chr3_4:30681044-30681063 None:intergenic 40.0%
GGAGTTAGTCATGAGAAGAA+AGG - chr3_4:30681046-30681065 Msa0497490:intron 40.0%
TAACACCAACCTGATATCAG+AGG + chr3_4:30681086-30681105 None:intergenic 40.0%
! GTTTGGGACACAAATAGAGT+TGG + chr3_4:30681282-30681301 None:intergenic 40.0%
TGTCCCAAACAAACATGGTA+TGG - chr3_4:30681292-30681311 Msa0497490:intron 40.0%
ACCGAGCAGAAAGATGAAAT+GGG - chr3_4:30681535-30681554 Msa0497490:intron 40.0%
ACCCATTTCATCTTTCTGCT+CGG + chr3_4:30681539-30681558 None:intergenic 40.0%
AATGGGTGACATTCATGATG+AGG - chr3_4:30681552-30681571 Msa0497490:intron 40.0%
GTTGATTACAATGTCACAGG+AGG - chr3_4:30681877-30681896 Msa0497490:intron 40.0%
AGTTGTGTTTGCGCTTGATT+TGG - chr3_4:30682085-30682104 Msa0497490:intron 40.0%
GTTGTGTTTGCGCTTGATTT+GGG - chr3_4:30682086-30682105 Msa0497490:intron 40.0%
! TTTGGGTAAGATTTTGGGCA+AGG - chr3_4:30682103-30682122 Msa0497490:intron 40.0%
! TCTAAGATCTGGCATCAACT+AGG - chr3_4:30682219-30682238 Msa0497490:intron 40.0%
GTGCGACTATTTGAAAACAC+TGG + chr3_4:30682291-30682310 None:intergenic 40.0%
TTCCAAATGTTCTCATTGGC+AGG - chr3_4:30682940-30682959 Msa0497490:intron 40.0%
TCCAAATGTTCTCATTGGCA+GGG - chr3_4:30682941-30682960 Msa0497490:intron 40.0%
TGAAGATGACGATGATCAAG+AGG - chr3_4:30682982-30683001 Msa0497490:intron 40.0%
! GGAGTATCTTAGTGGTCTTT+AGG - chr3_4:30683094-30683113 Msa0497490:CDS 40.0%
AATAAGGTTTACGCCCAAAG+GGG + chr3_4:30683155-30683174 None:intergenic 40.0%
!! TGTGCTTTGAAGGTGATTTC+TGG - chr3_4:30683178-30683197 Msa0497490:five_prime_UTR 40.0%
!!! GGGAAGTGTTAGGGTTTTGA+GGG + chr3_4:30678776-30678795 None:intergenic 45.0%
!!! AGGGAAGTGTTAGGGTTTTG+AGG + chr3_4:30678777-30678796 None:intergenic 45.0%
!! CGTGAATGAGGGAAGTGTTA+GGG + chr3_4:30678785-30678804 None:intergenic 45.0%
! CTTTTCTTCGAGCGTGAATG+AGG + chr3_4:30678797-30678816 None:intergenic 45.0%
CCTAGGGATCACCCAAAATT+AGG + chr3_4:30679178-30679197 None:intergenic 45.0%
!! CCTAATTTTGGGTGATCCCT+AGG - chr3_4:30679175-30679194 Msa0497490:intron 45.0%
TCATTGCGCTTGTCATACAC+CGG + chr3_4:30679683-30679702 None:intergenic 45.0%
TCAAGTCCATTCCCGATTTC+TGG - chr3_4:30679708-30679727 Msa0497490:intron 45.0%
AGTTAGCCAGAAATCGGGAA+TGG + chr3_4:30679717-30679736 None:intergenic 45.0%
TACCGCAGTTAGCCAGAAAT+CGG + chr3_4:30679723-30679742 None:intergenic 45.0%
AGAGATCACCAAGAACAGGA+TGG + chr3_4:30679867-30679886 None:intergenic 45.0%
! CGACTCCAATCCCTATTTTG+AGG - chr3_4:30680812-30680831 Msa0497490:intron 45.0%
TTACCGCCACACCCATAAAA+TGG - chr3_4:30680886-30680905 Msa0497490:intron 45.0%
!! AACATGAAGGGCATTCCCAA+TGG - chr3_4:30681025-30681044 Msa0497490:intron 45.0%
GTTGGAACCATGCAAAACTC+TGG + chr3_4:30681264-30681283 None:intergenic 45.0%
CCTTACTCGTGAGATAACAC+TGG + chr3_4:30681330-30681349 None:intergenic 45.0%
CCAGTGTTATCTCACGAGTA+AGG - chr3_4:30681327-30681346 Msa0497490:intron 45.0%
CACCGAGCAGAAAGATGAAA+TGG - chr3_4:30681534-30681553 Msa0497490:intron 45.0%
! TGATGATGAAGCTGGTGATG+CGG - chr3_4:30681922-30681941 Msa0497490:intron 45.0%
! GGTAAGATTTTGGGCAAGGT+GGG - chr3_4:30682107-30682126 Msa0497490:CDS 45.0%
TGTTGTTGTGCTACAGCAGA+GGG - chr3_4:30682389-30682408 Msa0497490:intron 45.0%
GTGAAGCAACTACATAGCTC+TGG + chr3_4:30682833-30682852 None:intergenic 45.0%
TCCCTGCCAATGAGAACATT+TGG + chr3_4:30682945-30682964 None:intergenic 45.0%
ATGTTCTCATTGGCAGGGAA+AGG - chr3_4:30682946-30682965 Msa0497490:intron 45.0%
TAGGGGATGATGAAAGACCA+AGG - chr3_4:30683113-30683132 Msa0497490:CDS 45.0%
GGATGATGAAAGACCAAGGT+TGG - chr3_4:30683117-30683136 Msa0497490:CDS 45.0%
! GAAAGACCAAGGTTGGCTAT+TGG - chr3_4:30683124-30683143 Msa0497490:exon 45.0%
GGAAAACCAATAGCCAACCT+TGG + chr3_4:30683133-30683152 None:intergenic 45.0%
!!! GCTATTGGTTTTCCCCCTTT+GGG - chr3_4:30683139-30683158 Msa0497490:five_prime_UTR 45.0%
ATAAGGTTTACGCCCAAAGG+GGG + chr3_4:30683154-30683173 None:intergenic 45.0%
!! TAAATATCTAAAAAAATAAA+TGG + chr3_4:30680591-30680610 None:intergenic 5.0%
!!! GTTTTAATTTATTTATTTTA+AGG - chr3_4:30683063-30683082 Msa0497490:CDS 5.0%
!! GCGTGAATGAGGGAAGTGTT+AGG + chr3_4:30678786-30678805 None:intergenic 50.0%
ACAAACTCTCCACTGCGCTA+GGG - chr3_4:30678820-30678839 Msa0497490:three_prime_UTR 50.0%
TGAAAAGGGTGAGAACGCTG+AGG - chr3_4:30678910-30678929 Msa0497490:three_prime_UTR 50.0%
!! TCCCGATTTCTGGCTAACTG+CGG - chr3_4:30679718-30679737 Msa0497490:intron 50.0%
ACCGCAGTTAGCCAGAAATC+GGG + chr3_4:30679722-30679741 None:intergenic 50.0%
AGCTGCCTCTGATATCAGGT+TGG - chr3_4:30681078-30681097 Msa0497490:intron 50.0%
CATCCTCCTCTGCTTCATCA+GGG + chr3_4:30681904-30681923 None:intergenic 50.0%
TCATCCTCCTCTGCTTCATC+AGG + chr3_4:30681905-30681924 None:intergenic 50.0%
! GAGGAGGATGATGATGAAGC+TGG - chr3_4:30681914-30681933 Msa0497490:intron 50.0%
! GGGTAAGATTTTGGGCAAGG+TGG - chr3_4:30682106-30682125 Msa0497490:CDS 50.0%
GGCAAGGTGGGTATTCAAAG+AGG - chr3_4:30682119-30682138 Msa0497490:CDS 50.0%
CTGTTGTTGTGCTACAGCAG+AGG - chr3_4:30682388-30682407 Msa0497490:intron 50.0%
GTTGTTGTGCTACAGCAGAG+GGG - chr3_4:30682390-30682409 Msa0497490:intron 50.0%
! AGAGGATGACGATGATGACG+AGG - chr3_4:30683000-30683019 Msa0497490:intron 50.0%
!!! GGCTATTGGTTTTCCCCCTT+TGG - chr3_4:30683138-30683157 Msa0497490:five_prime_UTR 50.0%
CACAAACTCTCCACTGCGCT+AGG - chr3_4:30678819-30678838 Msa0497490:three_prime_UTR 55.0%
GGTTTCAAACCCTAGCGCAG+TGG + chr3_4:30678832-30678851 None:intergenic 55.0%
CTTAGACTTGTCGGCCACCA+TGG + chr3_4:30678876-30678895 None:intergenic 55.0%
GAGAACGCTGAGGAGATCGA+CGG - chr3_4:30678920-30678939 Msa0497490:three_prime_UTR 55.0%
AGCGAGCTGCCTCTGATATC+AGG - chr3_4:30681074-30681093 Msa0497490:intron 55.0%
!! CTGCTCGGTGTCACAAAACC+AGG + chr3_4:30681524-30681543 None:intergenic 55.0%
GGAGGACCCTGATGAAGCAG+AGG - chr3_4:30681895-30681914 Msa0497490:intron 60.0%
GGACCCTGATGAAGCAGAGG+AGG - chr3_4:30681898-30681917 Msa0497490:intron 60.0%
TAACAACGGTGCGCGCGTGC+GGG + chr3_4:30678705-30678724 None:intergenic 65.0%
CTAACAACGGTGCGCGCGTG+CGG + chr3_4:30678706-30678725 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 30678654 30683358 30678654 ID=Msa0497490;Name=Msa0497490
chr3_4 mRNA 30678654 30683358 30678654 ID=Msa0497490-mRNA-1;Parent=Msa0497490;Name=Msa0497490-mRNA-1;_AED=0.05;_eAED=0.05;_QI=221|1|1|1|1|1|10|325|260
chr3_4 exon 30678654 30679050 30678654 ID=Msa0497490-mRNA-1:exon:6860;Parent=Msa0497490-mRNA-1
chr3_4 exon 30680069 30680116 30680069 ID=Msa0497490-mRNA-1:exon:6859;Parent=Msa0497490-mRNA-1
chr3_4 exon 30680240 30680296 30680240 ID=Msa0497490-mRNA-1:exon:6858;Parent=Msa0497490-mRNA-1
chr3_4 exon 30680439 30680499 30680439 ID=Msa0497490-mRNA-1:exon:6857;Parent=Msa0497490-mRNA-1
chr3_4 exon 30680917 30680978 30680917 ID=Msa0497490-mRNA-1:exon:6856;Parent=Msa0497490-mRNA-1
chr3_4 exon 30681092 30681205 30681092 ID=Msa0497490-mRNA-1:exon:6855;Parent=Msa0497490-mRNA-1
chr3_4 exon 30681337 30681408 30681337 ID=Msa0497490-mRNA-1:exon:6854;Parent=Msa0497490-mRNA-1
chr3_4 exon 30682106 30682156 30682106 ID=Msa0497490-mRNA-1:exon:6853;Parent=Msa0497490-mRNA-1
chr3_4 exon 30682273 30682395 30682273 ID=Msa0497490-mRNA-1:exon:6852;Parent=Msa0497490-mRNA-1
chr3_4 exon 30683015 30683358 30683015 ID=Msa0497490-mRNA-1:exon:6851;Parent=Msa0497490-mRNA-1
chr3_4 five_prime_UTR 30683138 30683358 30683138 ID=Msa0497490-mRNA-1:five_prime_utr;Parent=Msa0497490-mRNA-1
chr3_4 CDS 30683015 30683137 30683015 ID=Msa0497490-mRNA-1:cds;Parent=Msa0497490-mRNA-1
chr3_4 CDS 30682273 30682395 30682273 ID=Msa0497490-mRNA-1:cds;Parent=Msa0497490-mRNA-1
chr3_4 CDS 30682106 30682156 30682106 ID=Msa0497490-mRNA-1:cds;Parent=Msa0497490-mRNA-1
chr3_4 CDS 30681337 30681408 30681337 ID=Msa0497490-mRNA-1:cds;Parent=Msa0497490-mRNA-1
chr3_4 CDS 30681092 30681205 30681092 ID=Msa0497490-mRNA-1:cds;Parent=Msa0497490-mRNA-1
chr3_4 CDS 30680917 30680978 30680917 ID=Msa0497490-mRNA-1:cds;Parent=Msa0497490-mRNA-1
chr3_4 CDS 30680439 30680499 30680439 ID=Msa0497490-mRNA-1:cds;Parent=Msa0497490-mRNA-1
chr3_4 CDS 30680240 30680296 30680240 ID=Msa0497490-mRNA-1:cds;Parent=Msa0497490-mRNA-1
chr3_4 CDS 30680069 30680116 30680069 ID=Msa0497490-mRNA-1:cds;Parent=Msa0497490-mRNA-1
chr3_4 CDS 30678979 30679050 30678979 ID=Msa0497490-mRNA-1:cds;Parent=Msa0497490-mRNA-1
chr3_4 three_prime_UTR 30678654 30678978 30678654 ID=Msa0497490-mRNA-1:three_prime_utr;Parent=Msa0497490-mRNA-1
Gene Sequence

>Msa0497490

ATGGTGGCCGACAAGTCTAAGAAGTTGAAAGTTTCTGAAAAGGGTGAGAACGCTGAGGAGATCGACGGAGAACTTGTTCTCTCCATTGAAAAGTTGCAGGAAATTCAAGATGAGATTGAAAAGATCAATGAGGAGGCTAGCGATAAAGTTCTCGAAATAGAGCAGAAGTACAATGAAGTAAGGAAACCGGTGTATGACAAGCGCAATGATGTGATCAAGTCCATTCCCGATTTCTGGCTAACTGCGTTTTTGAGCCATCCTGTTCTTGGTGATCTCTTGAATGAAGAAGATCAGAAGATATTTAAGCATTTAATCTCTCTTGAGGTGGAAGATCATAAAGATGTTAAATCAGGCTATTCAATCACATTTAACTTCGACTCCAATCCCTATTTTGAGGATTCAAAACTTGTCAAGACTTTTACCTTCCTTGAAGAAGGAACAACAAAGCTTACCGCCACACCCATAAAATGGAAAGAGGGCAAGGGCATTCCCAATGGAGTTAGTCATGAGAAGAAAGGGAACAAGCGAGCTGCCTCTGATATCAGTTTCTTTACCTGGTTTTGTGACACCGAGCAGAAAGATGAAATGGGTGACATTCATGATGAGATTGCTGAAATGATCAAGGATGATTTATGGCCGAATCCGCTCAATTATTTCAACAGTGAGGACCCTGATGAAGCAGAGGAGGATGATGATGAAGCTGGTGATGCGGGAAAGGATGATGATGACTCTGAAGATGACGATGATCAAGAGGATGACGATGATGACGAGGAAGAAGAATAG

Protein sequence

>Msa0497490

MVADKSKKLKVSEKGENAEEIDGELVLSIEKLQEIQDEIEKINEEASDKVLEIEQKYNEVRKPVYDKRNDVIKSIPDFWLTAFLSHPVLGDLLNEEDQKIFKHLISLEVEDHKDVKSGYSITFNFDSNPYFEDSKLVKTFTFLEEGTTKLTATPIKWKEGKGIPNGVSHEKKGNKRAASDISFFTWFCDTEQKDEMGDIHDEIAEMIKDDLWPNPLNYFNSEDPDEAEEDDDEAGDAGKDDDDSEDDDDQEDDDDDEEEE*