AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0794670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0794670 MtrunA17_Chr5g0396231 91.451 503 23 3 1 484 1 502 0.0 849
Msa0794670 MtrunA17_Chr4g0014351 57.143 119 50 1 364 481 750 868 9.48e-39 150
Msa0794670 MtrunA17_Chr4g0014351 37.273 220 108 6 1 200 1 210 5.98e-32 130
Msa0794670 MtrunA17_Chr4g0052911 35.593 177 88 7 316 479 74 237 1.11e-21 94.0
Msa0794670 MtrunA17_Chr8g0339171 53.684 95 37 4 391 481 46 137 1.42e-19 85.5
Msa0794670 MtrunA17_Chr8g0382711 33.333 183 101 7 313 481 31 206 8.15e-18 82.0
Msa0794670 MtrunA17_Chr1g0179681 34.286 140 79 4 352 482 109 244 4.41e-16 78.2
Msa0794670 MtrunA17_Chr8g0352971 46.316 95 48 2 388 479 10 104 5.77e-15 76.6
Msa0794670 MtrunA17_Chr8g0377771 49.438 89 42 3 393 479 54 141 6.79e-15 77.0
Msa0794670 MtrunA17_Chr8g0339141 48.315 89 43 3 393 479 56 143 9.25e-15 76.6
Msa0794670 MtrunA17_Chr7g0234801 47.126 87 43 3 395 479 52 137 1.06e-14 76.6
Msa0794670 MtrunA17_Chr4g0033841 38.406 138 67 6 353 483 97 223 1.52e-12 67.0
Msa0794670 MtrunA17_Chr5g0435521 40.659 91 48 3 398 484 35 123 3.18e-12 65.5
Msa0794670 MtrunA17_Chr1g0179231 36.364 121 44 3 395 482 96 216 1.63e-11 63.9
Msa0794670 MtrunA17_Chr7g0255551 39.773 88 48 2 395 479 39 124 3.30e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0794670 AT4G25340.1 46.575 511 210 15 1 482 1 477 9.08e-112 339
Msa0794670 AT4G25340.2 43.803 468 201 14 1 440 1 434 1.53e-86 273
Msa0794670 AT5G05420.1 63.889 108 39 0 375 482 36 143 4.19e-44 152
Msa0794670 AT3G12340.3 51.562 128 61 1 355 481 250 377 9.16e-36 137
Msa0794670 AT3G12340.2 51.562 128 61 1 355 481 250 377 9.16e-36 137
Msa0794670 AT3G12340.1 51.562 128 61 1 355 481 371 498 1.12e-34 136
Msa0794670 AT3G25220.1 51.546 97 40 4 391 483 48 141 2.08e-19 85.5
Msa0794670 AT5G48580.1 49.462 93 44 3 391 481 48 139 7.43e-19 84.3
Msa0794670 AT5G45680.1 42.500 120 53 5 374 480 90 206 1.02e-18 85.1
Msa0794670 AT3G25230.1 50.575 87 40 3 395 479 57 142 5.16e-16 81.3
Msa0794670 AT3G25230.2 51.685 89 36 4 395 479 57 142 6.71e-16 80.9
Msa0794670 AT5G48570.1 50.000 90 38 4 395 480 65 151 9.52e-16 80.5
Msa0794670 AT3G10060.1 34.194 155 87 5 337 482 69 217 3.29e-15 75.5
Msa0794670 AT2G43560.1 38.261 115 62 4 375 483 106 217 2.82e-13 69.7
Msa0794670 AT3G55520.2 41.758 91 47 3 398 484 35 123 3.37e-13 68.6
Msa0794670 AT3G55520.3 41.758 91 47 3 398 484 35 123 3.37e-13 68.6
Msa0794670 AT3G55520.1 41.758 91 47 3 398 484 35 123 3.37e-13 68.6
Msa0794670 AT2G43560.2 38.261 115 62 4 375 483 50 161 3.83e-13 67.8

Find 135 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCGAAGCATCCATCTTTC+TGG 0.194721 5_3:+6595019 Msa0794670:CDS
CACTGACGACAATGGGATTC+TGG 0.208619 5_3:+6593587 Msa0794670:exon
TTAAGGAATCATTAAATTAA+AGG 0.223146 5_3:+6598450 Msa0794670:three_prime_UTR
AGCTTCTCCTTCAGCCTCTT+TGG 0.225392 5_3:-6597268 None:intergenic
TTTCTTCAGGGATGAGGGTT+GGG 0.234866 5_3:+6597895 Msa0794670:intron
AGGTGATTGCAGAAATATTA+AGG 0.242186 5_3:+6598433 Msa0794670:three_prime_UTR
AGCATTCTTCAGTGCGCTTC+TGG 0.249781 5_3:+6594887 Msa0794670:CDS
ACTTACAATTCCACCATCTA+TGG 0.251042 5_3:+6597929 Msa0794670:CDS
CAGCTTCCAGTTGTCATTAG+AGG 0.251117 5_3:+6596218 Msa0794670:CDS
TCTGAATTTGATAGTGAAAA+TGG 0.258524 5_3:+6595274 Msa0794670:CDS
CATACCAAGTCGAAACTTAA+AGG 0.287309 5_3:-6597663 None:intergenic
TTGCCGCTTCGGCTTCGTTT+TGG 0.304667 5_3:+6598190 Msa0794670:three_prime_UTR
CCTTTGTCGCTAGACTTTAC+AGG 0.307524 5_3:+6598255 Msa0794670:three_prime_UTR
TCCAGACAACCAACATTATA+CGG 0.330975 5_3:-6598360 None:intergenic
TTGGGAGAGGACGTGGGAAC+TGG 0.337787 5_3:+6595238 Msa0794670:CDS
AAAATATTTGACTCGTGTAT+TGG 0.338581 5_3:+6597632 Msa0794670:CDS
TGGGATTACAATTAGCGTTT+TGG 0.341341 5_3:-6593490 None:intergenic
GGATAGGTTCTCACGTTAGA+TGG 0.341955 5_3:-6597378 None:intergenic
GGTTATAGAGGACATATCTA+TGG 0.345544 5_3:+6597410 Msa0794670:CDS
AAATGAAATTCAACTTCGTC+AGG 0.350910 5_3:-6593559 None:intergenic
AACCAGAAAGATGGATGCTT+CGG 0.367662 5_3:-6595021 None:intergenic
TCTCTCGTGTCGTCGTCATC+TGG 0.377480 5_3:-6595052 None:intergenic
ACAATGCAAAAGTGATTCAT+TGG 0.381195 5_3:+6595219 Msa0794670:intron
TGCAAACCTCGCATATTCAT+TGG 0.384699 5_3:+6598232 Msa0794670:three_prime_UTR
GGATGACTTGGTGGCATTCT+CGG 0.384813 5_3:+6594988 Msa0794670:CDS
GGAGTATACCACAAAATTCA+TGG 0.385779 5_3:+6598115 Msa0794670:CDS
TGCCCTTTGAATCTTAAGTT+TGG 0.390870 5_3:+6594962 Msa0794670:CDS
GCTTTGTCTGAAGTGGAAAT+CGG 0.394739 5_3:-6596284 None:intergenic
ACAATTTCATACCCCATAGA+TGG 0.396140 5_3:-6597942 None:intergenic
TCCGTATAATGTTGGTTGTC+TGG 0.398823 5_3:+6598359 Msa0794670:three_prime_UTR
TGCAATCACCTAAAACATAA+AGG 0.401860 5_3:-6598421 None:intergenic
ACTGACGACAATGGGATTCT+GGG 0.403272 5_3:+6593588 Msa0794670:exon
GTTGAGTTGGTTGGCGTTGA+AGG 0.403304 5_3:+6598150 Msa0794670:CDS
GGGTGGGATGTTGGCGTCAA+TGG 0.405209 5_3:+6597787 Msa0794670:CDS
AAATTAAAGGAATAATTGTA+TGG 0.411566 5_3:+6598463 Msa0794670:three_prime_UTR
GGGCACGTCTCAACCTTGTT+TGG 0.412493 5_3:-6594944 None:intergenic
TCCTCTATAACCAATCCATT+TGG 0.417967 5_3:-6597399 None:intergenic
TTGCATGAGAGACATTGTTC+TGG 0.419904 5_3:-6597061 None:intergenic
TGAAAACCCTTACTCATCAT+TGG 0.420043 5_3:-6597108 None:intergenic
ACTTTACAGGAGCCGAAGTT+TGG 0.422203 5_3:+6598268 Msa0794670:three_prime_UTR
TCCACATCGTCAGTACTATA+CGG 0.427484 5_3:-6593751 None:intergenic
AAGTGAGCTGTTTGTTCGTC+GGG 0.427594 5_3:-6596170 None:intergenic
GGTTGTCTGGAGTAATTTGA+TGG 0.431019 5_3:+6598372 Msa0794670:three_prime_UTR
TTGTCACCTCTAATGACAAC+TGG 0.439166 5_3:-6596224 None:intergenic
AGATTTAGCTTTGTCTGAAG+TGG 0.441957 5_3:-6596291 None:intergenic
TTCTTCAGGGATGAGGGTTG+GGG 0.443024 5_3:+6597896 Msa0794670:intron
GGTTCTCACGTTAGATGGCT+TGG 0.444994 5_3:-6597373 None:intergenic
CATGCAAAGGATGGAGATGA+TGG 0.445035 5_3:+6597077 Msa0794670:CDS
TGATTCATTGGGAGAGGACG+TGG 0.450717 5_3:+6595231 Msa0794670:CDS
GATGGCAAAAGAGCTGATCT+TGG 0.455967 5_3:+6597441 Msa0794670:CDS
CAGGTCAGTGTTAGATATAC+CGG 0.457744 5_3:+6597590 Msa0794670:intron
CAAGTGAGCTGTTTGTTCGT+CGG 0.458844 5_3:-6596171 None:intergenic
ATACCAAGTCGAAACTTAAA+GGG 0.462033 5_3:-6597662 None:intergenic
TCCAAATGGATTGGTTATAG+AGG 0.465197 5_3:+6597398 Msa0794670:CDS
ACCAGAAAGATGGATGCTTC+GGG 0.470599 5_3:-6595020 None:intergenic
CTAAAATTTCAGGCTACTCT+AGG 0.474162 5_3:+6594842 Msa0794670:intron
AGGTGACAATAAGTTTGTCT+TGG 0.479792 5_3:+6596238 Msa0794670:CDS
ATATTTGATGTTGAGTTGGT+TGG 0.480042 5_3:+6598141 Msa0794670:CDS
CTATACGGAACCGGATTGCC+AGG 0.485280 5_3:-6593736 None:intergenic
GCACAAAATAACCAGAAAGA+TGG 0.487484 5_3:-6595030 None:intergenic
CTTACAATTCCACCATCTAT+GGG 0.490011 5_3:+6597930 Msa0794670:CDS
GTCATCAAGGGGTGGGATGT+TGG 0.490964 5_3:+6597778 Msa0794670:CDS
GCTTATATTTGATGTTGAGT+TGG 0.494265 5_3:+6598137 Msa0794670:CDS
AACGTGAGAACCTATCCAAA+TGG 0.495137 5_3:+6597384 Msa0794670:CDS
AAGAGCTGATCTTGGAAAGA+AGG 0.496054 5_3:+6597449 Msa0794670:CDS
CTTTGTCTGAAGTGGAAATC+GGG 0.496076 5_3:-6596283 None:intergenic
TTTCTTTGTCCGTATAATGT+TGG 0.498430 5_3:+6598351 Msa0794670:three_prime_UTR
TGAAGTGAAACCTGGCAATC+CGG 0.499808 5_3:+6593726 Msa0794670:CDS
TTAGATGGCTTGGCTTCAGT+TGG 0.504936 5_3:-6597363 None:intergenic
TCACCAAACTTAAGATTCAA+AGG 0.507727 5_3:-6594965 None:intergenic
CTCAACCTTGTTTGGCAGCA+AGG 0.509715 5_3:-6594936 None:intergenic
TGGGAGAGGACGTGGGAACT+GGG 0.512185 5_3:+6595239 Msa0794670:CDS
AACTGGGAAATCCAAGAAGA+AGG 0.515282 5_3:+6596364 Msa0794670:CDS
GTGTTCCTTGCTGCCAAACA+AGG 0.525261 5_3:+6594931 Msa0794670:CDS
TTTCAGGCTACTCTAGGCGT+TGG 0.525313 5_3:+6594848 Msa0794670:intron
TATAACCAATCCATTTGGAT+AGG 0.528390 5_3:-6597394 None:intergenic
ACAAAATACCTCCACTACTC+CGG 0.530163 5_3:-6595354 None:intergenic
CAATGCAAAAGTGATTCATT+GGG 0.534185 5_3:+6595220 Msa0794670:intron
ATGAGAGACATTGTTCTGGT+TGG 0.538743 5_3:-6597057 None:intergenic
GCACCCTTTAAGTTTCGACT+TGG 0.542842 5_3:+6597659 Msa0794670:CDS
AGACCAAAACGAAGCCGAAG+CGG 0.546308 5_3:-6598193 None:intergenic
GTGAATTTCCTACCAAACTT+CGG 0.546783 5_3:-6598280 None:intergenic
GTTTGGTGAGGATGACTTGG+TGG 0.548655 5_3:+6594979 Msa0794670:CDS
TGTACACATCTTCGCCAGTC+CGG 0.549126 5_3:+6595335 Msa0794670:CDS
CCTAAAACATAAAGGAATGG+AGG 0.549533 5_3:-6598413 None:intergenic
AAGGCTGAAACAGAAACAAA+AGG 0.552836 5_3:+6596323 Msa0794670:CDS
TCGTCAGTACTATACGGAAC+CGG 0.556211 5_3:-6593745 None:intergenic
CACCAAACTTAAGATTCAAA+GGG 0.556434 5_3:-6594964 None:intergenic
GTTATAGAGGACATATCTAT+GGG 0.558134 5_3:+6597411 Msa0794670:CDS
CAAAAGTGATTCATTGGGAG+AGG 0.559260 5_3:+6595225 Msa0794670:intron
GAGAACCTATCCAAATGGAT+TGG 0.560765 5_3:+6597389 Msa0794670:CDS
TCTTCGCCAGTCCGGAGTAG+TGG 0.561425 5_3:+6595343 Msa0794670:CDS
TAAGTTTGGTGAGGATGACT+TGG 0.562154 5_3:+6594976 Msa0794670:CDS
GGAGGAAAGTGCTCATGTAA+AGG 0.563185 5_3:+6596983 Msa0794670:CDS
TCACCTAAAACATAAAGGAA+TGG 0.566530 5_3:-6598416 None:intergenic
AGGATGAGCAGCTGCAAGAT+GGG 0.567860 5_3:+6596441 Msa0794670:CDS
AGGTGTAGGACAAGTCATCA+AGG 0.569087 5_3:+6597765 Msa0794670:intron
TTGGTGGCATTCTCGGTCGT+CGG 0.569677 5_3:+6594995 Msa0794670:CDS
TCAGGGATTGAAGTGAAACC+TGG 0.572044 5_3:+6593718 Msa0794670:intron
CTAAAACATAAAGGAATGGA+GGG 0.574988 5_3:-6598412 None:intergenic
TTTGAATCTTAAGTTTGGTG+AGG 0.577124 5_3:+6594967 Msa0794670:CDS
CAAGTTGAAAGATCATGGTA+AGG 0.578952 5_3:+6596962 Msa0794670:CDS
AATGTCTCTCATGCAAAGGA+TGG 0.579761 5_3:+6597068 Msa0794670:CDS
CCTGTAAAGTCTAGCGACAA+AGG 0.580442 5_3:-6598255 None:intergenic
TTGGAAAGTGAAGATGAAGA+TGG 0.586293 5_3:+6596257 Msa0794670:CDS
AGCTAAATCTGAGTCTCAGA+AGG 0.587477 5_3:+6596304 Msa0794670:CDS
GATATGGTGACAAACGTGTT+GGG 0.590168 5_3:+6598094 Msa0794670:intron
AGGAAAGCTTCACGTCACTC+AGG 0.592401 5_3:+6593774 Msa0794670:CDS
ATATCTATGGGCAAACCAGA+TGG 0.595038 5_3:+6597423 Msa0794670:CDS
GGTGTAGGACAAGTCATCAA+GGG 0.596781 5_3:+6597766 Msa0794670:intron
AATGAAATTCAACTTCGTCA+GGG 0.600359 5_3:-6593558 None:intergenic
GAGGATGAGCAGCTGCAAGA+TGG 0.601018 5_3:+6596440 Msa0794670:CDS
GGACGTGGGAACTGGGTCAG+AGG 0.603866 5_3:+6595246 Msa0794670:CDS
AGGACAAGTCATCAAGGGGT+GGG 0.609520 5_3:+6597771 Msa0794670:CDS
ATACCTCCACTACTCCGGAC+TGG 0.610928 5_3:-6595349 None:intergenic
GAACAATGTCTCTCATGCAA+AGG 0.611604 5_3:+6597064 Msa0794670:CDS
TACAGGAGCCGAAGTTTGGT+AGG 0.613619 5_3:+6598272 Msa0794670:three_prime_UTR
TAGGACAAGTCATCAAGGGG+TGG 0.614183 5_3:+6597770 Msa0794670:CDS
TCGCCAGTCCGGAGTAGTGG+AGG 0.614191 5_3:+6595346 Msa0794670:CDS
GTTGAAAGATCATGGTAAGG+AGG 0.614660 5_3:+6596965 Msa0794670:CDS
ATGCAAAGGATGGAGATGAT+GGG 0.616446 5_3:+6597078 Msa0794670:CDS
ATTTCATACCCCATAGATGG+TGG 0.621077 5_3:-6597939 None:intergenic
AGATATGGTGACAAACGTGT+TGG 0.627092 5_3:+6598093 Msa0794670:intron
TCCGTATAGTACTGACGATG+TGG 0.632230 5_3:+6593750 Msa0794670:CDS
TCTAGGCGTTGGTCCATCGA+CGG 0.649382 5_3:+6594859 Msa0794670:CDS
TATAGTACTGACGATGTGGA+AGG 0.650155 5_3:+6593754 Msa0794670:CDS
CTGACGACAATGGGATTCTG+GGG 0.658715 5_3:+6593589 Msa0794670:exon
AAAAGTTCAAGCTGTCGATG+AGG 0.663434 5_3:+6596421 Msa0794670:CDS
GTGTAGGACAAGTCATCAAG+GGG 0.668593 5_3:+6597767 Msa0794670:CDS
GCCAGATGAAAAGTCTGAGG+AGG 0.674614 5_3:+6597022 Msa0794670:CDS
CAAAGGCCAATGAATATGCG+AGG 0.674978 5_3:-6598238 None:intergenic
TGTGCCAGATGAAAAGTCTG+AGG 0.679651 5_3:+6597019 Msa0794670:CDS
GATTCATTGGGAGAGGACGT+GGG 0.690481 5_3:+6595232 Msa0794670:CDS
GCTCACTTGAAAGAGAAACC+CGG 0.694878 5_3:+6596185 Msa0794670:CDS
TTACAATTCCACCATCTATG+GGG 0.701878 5_3:+6597931 Msa0794670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATATTTATTTATGAATC+CGG - chr5_3:6595532-6595551 None:intergenic 10.0%
!! CAATTATTATTTATCATCTA+AGG - chr5_3:6594039-6594058 None:intergenic 15.0%
!! CAAATAAATGCATATTATAT+AGG - chr5_3:6594709-6594728 None:intergenic 15.0%
!! ACGTTAACTAAAATATTATA+GGG + chr5_3:6595581-6595600 Msa0794670:intron 15.0%
!! TAATTACTAAACACTTTAAT+AGG - chr5_3:6595683-6595702 None:intergenic 15.0%
!!! TTAAATTTTAAAAATGTTCC+TGG - chr5_3:6595716-6595735 None:intergenic 15.0%
!! AGAATATATTTCTTTATGAT+GGG + chr5_3:6596766-6596785 Msa0794670:intron 15.0%
!!! ATTTATCTTTTATTTTCTTC+AGG + chr5_3:6597882-6597901 Msa0794670:intron 15.0%
!!! TTTATCTTTTATTTTCTTCA+GGG + chr5_3:6597883-6597902 Msa0794670:intron 15.0%
!! TTAAGGAATCATTAAATTAA+AGG + chr5_3:6598450-6598469 Msa0794670:three_prime_UTR 15.0%
!! AAATTAAAGGAATAATTGTA+TGG + chr5_3:6598463-6598482 Msa0794670:three_prime_UTR 15.0%
!! AAACAGAAATAAGTGATTAA+CGG - chr5_3:6593640-6593659 None:intergenic 20.0%
!! TGATAAGTTCAAATACAAAA+CGG - chr5_3:6593701-6593720 None:intergenic 20.0%
!!! TTTTGTATTTGAACTTATCA+GGG + chr5_3:6593701-6593720 Msa0794670:intron 20.0%
!!! TGATGTTTTTACTGTTTATT+AGG + chr5_3:6593902-6593921 Msa0794670:intron 20.0%
!!! GATGTTTTTACTGTTTATTA+GGG + chr5_3:6593903-6593922 Msa0794670:intron 20.0%
!! AATTGAAGTATATGCATTAT+TGG + chr5_3:6594059-6594078 Msa0794670:intron 20.0%
!! GAATTAATGTGTTGAATTTA+TGG - chr5_3:6594213-6594232 None:intergenic 20.0%
!! TAAATTCAACACATTAATTC+TGG + chr5_3:6594213-6594232 Msa0794670:intron 20.0%
!! CACGTTAACTAAAATATTAT+AGG + chr5_3:6595580-6595599 Msa0794670:intron 20.0%
!! CGTTAACTAAAATATTATAG+GGG + chr5_3:6595582-6595601 Msa0794670:intron 20.0%
!!! AGTAATTAATTTAGTTTTCC+AGG + chr5_3:6595695-6595714 Msa0794670:intron 20.0%
!! AAAGAAAACTGAAAAATACA+AGG + chr5_3:6596024-6596043 Msa0794670:intron 20.0%
!! AATAAATAATCCAGATACTT+TGG + chr5_3:6596556-6596575 Msa0794670:intron 20.0%
!! ATAAATAATCCAGATACTTT+GGG + chr5_3:6596557-6596576 Msa0794670:intron 20.0%
!!! AAAATTCAAAAACTTTTGCT+AGG + chr5_3:6596627-6596646 Msa0794670:intron 20.0%
!! GAGAATATATTTCTTTATGA+TGG + chr5_3:6596765-6596784 Msa0794670:intron 20.0%
!! AAGAAACTGGATTATAAAAT+AGG - chr5_3:6597544-6597563 None:intergenic 20.0%
!! CAAACGATAAATATAGATAA+AGG - chr5_3:6597744-6597763 None:intergenic 20.0%
!! AATCTTATTACGTTATTACT+AGG - chr5_3:6597827-6597846 None:intergenic 20.0%
!!! CATTTTTAGGGTTTAAAGAA+AGG + chr5_3:6593525-6593544 Msa0794670:five_prime_UTR 25.0%
!! GTTTTGTATTTGAACTTATC+AGG + chr5_3:6593700-6593719 Msa0794670:intron 25.0%
! GTATATCCATGTAATTCTAT+AGG - chr5_3:6594107-6594126 None:intergenic 25.0%
! ACGACAAAATTATCACAAAA+AGG - chr5_3:6594267-6594286 None:intergenic 25.0%
!! TGATAATTTTGTCGTTGAAT+TGG + chr5_3:6594272-6594291 Msa0794670:intron 25.0%
!! AATAATTTCACGACTTTTCT+TGG + chr5_3:6594329-6594348 Msa0794670:intron 25.0%
! AAGTCAATAACTAAAAACCA+AGG - chr5_3:6594592-6594611 None:intergenic 25.0%
!!! TGACAAATCATTTTTATCAG+CGG - chr5_3:6594636-6594655 None:intergenic 25.0%
! AAATCATATTGGACTTCAAA+AGG - chr5_3:6594782-6594801 None:intergenic 25.0%
!! TGAAGTCCAATATGATTTTA+TGG + chr5_3:6594784-6594803 Msa0794670:intron 25.0%
! TCGTAACCATAAAATCATAT+TGG - chr5_3:6594793-6594812 None:intergenic 25.0%
! ACAAAAGCTAGTTATTCAAA+AGG - chr5_3:6595094-6595113 None:intergenic 25.0%
!!! TTTGAATAACTAGCTTTTGT+TGG + chr5_3:6595094-6595113 Msa0794670:intron 25.0%
!!! TCTGAATTTGATAGTGAAAA+TGG + chr5_3:6595274-6595293 Msa0794670:CDS 25.0%
! TTATATGTATGAGCATTTGA+TGG - chr5_3:6595404-6595423 None:intergenic 25.0%
! TGGAAAAAACATCATGTTAT+TGG - chr5_3:6595472-6595491 None:intergenic 25.0%
!!! GATGTTTTTTCCAGTAAATT+TGG + chr5_3:6595479-6595498 Msa0794670:intron 25.0%
! TTAATAGGATTAAGATTCCT+AGG - chr5_3:6595668-6595687 None:intergenic 25.0%
! TTATTCCCATGTTAAAGTAT+GGG - chr5_3:6595830-6595849 None:intergenic 25.0%
! TTTATTCCCATGTTAAAGTA+TGG - chr5_3:6595831-6595850 None:intergenic 25.0%
! TTTAACATGGGAATAAAAAG+TGG + chr5_3:6595834-6595853 Msa0794670:intron 25.0%
!! AGTTTTCATAAATTATGCCT+AGG - chr5_3:6595874-6595893 None:intergenic 25.0%
! ATGAAAACTTGAAACAAACA+TGG + chr5_3:6595885-6595904 Msa0794670:intron 25.0%
! TGAAAACTTGAAACAAACAT+GGG + chr5_3:6595886-6595905 Msa0794670:intron 25.0%
! AACAAGCTCAAAAAAAAACT+GGG + chr5_3:6596348-6596367 Msa0794670:CDS 25.0%
!! TAACTTTTTAATAATCCACG+TGG + chr5_3:6596473-6596492 Msa0794670:intron 25.0%
!!! AAACAGTTTTTCAGATACTT+TGG + chr5_3:6596502-6596521 Msa0794670:intron 25.0%
!!! AACAGTTTTTCAGATACTTT+GGG + chr5_3:6596503-6596522 Msa0794670:intron 25.0%
! TTTCTATTCCTAAATCAAAC+AGG - chr5_3:6596529-6596548 None:intergenic 25.0%
!!! TTTTGAGAACTAAATCAAAC+AGG - chr5_3:6596583-6596602 None:intergenic 25.0%
! AAATATATTCTCCCACAAAT+TGG - chr5_3:6596757-6596776 None:intergenic 25.0%
! ACGTTTCTGATAATAATTTC+AGG + chr5_3:6596919-6596938 Msa0794670:intron 25.0%
!! AAAAACAAGTTGAAAGATCA+TGG + chr5_3:6596957-6596976 Msa0794670:CDS 25.0%
!!! TAAGAGTTTATGGTGTTTTT+TGG + chr5_3:6597198-6597217 Msa0794670:intron 25.0%
!! AAAATATTTGACTCGTGTAT+TGG + chr5_3:6597632-6597651 Msa0794670:CDS 25.0%
! TATCTATATTTATCGTTTGC+AGG + chr5_3:6597745-6597764 Msa0794670:intron 25.0%
! ATGCCATATTCTTTGTTAAA+TGG + chr5_3:6598025-6598044 Msa0794670:intron 25.0%
! TGCCATATTCTTTGTTAAAT+GGG + chr5_3:6598026-6598045 Msa0794670:intron 25.0%
! ATCCCATTTAACAAAGAATA+TGG - chr5_3:6598031-6598050 None:intergenic 25.0%
!! AATATAAGCCATGAATTTTG+TGG - chr5_3:6598126-6598145 None:intergenic 25.0%
!!! ATTTAAAATTTTTGCCGCTT+CGG + chr5_3:6598179-6598198 Msa0794670:exon 25.0%
!!! TTAGCGTTTTGGTTATTTGA+AGG - chr5_3:6593482-6593501 None:intergenic 30.0%
!!! AAAAATGAGTCTGTCGTTTT+GGG - chr5_3:6593512-6593531 None:intergenic 30.0%
!! TAAAAATGAGTCTGTCGTTT+TGG - chr5_3:6593513-6593532 None:intergenic 30.0%
!! AAAACGACAGACTCATTTTT+AGG + chr5_3:6593512-6593531 Msa0794670:five_prime_UTR 30.0%
!! AAACGACAGACTCATTTTTA+GGG + chr5_3:6593513-6593532 Msa0794670:five_prime_UTR 30.0%
AATGAAATTCAACTTCGTCA+GGG - chr5_3:6593561-6593580 None:intergenic 30.0%
AAATGAAATTCAACTTCGTC+AGG - chr5_3:6593562-6593581 None:intergenic 30.0%
!!! AGCTTTGTTTTCATTGAATC+TGG + chr5_3:6593868-6593887 Msa0794670:intron 30.0%
AACCATTCGTTGTATAATCT+AGG + chr5_3:6593931-6593950 Msa0794670:intron 30.0%
AACCTAGATTATACAACGAA+TGG - chr5_3:6593936-6593955 None:intergenic 30.0%
TGCATTCCTATAGAATTACA+TGG + chr5_3:6594098-6594117 Msa0794670:intron 30.0%
!!! TGGGCTTATTTTTTAGCTTA+TGG - chr5_3:6594559-6594578 None:intergenic 30.0%
AAAAAATAAGCCCATCCAAA+TGG + chr5_3:6594565-6594584 Msa0794670:intron 30.0%
AAAAATAAGCCCATCCAAAT+GGG + chr5_3:6594566-6594585 Msa0794670:intron 30.0%
TAGTATTTGCTTTGCTTTGT+TGG + chr5_3:6594661-6594680 Msa0794670:intron 30.0%
ATGCATTTATTTGCTTGCAT+TGG + chr5_3:6594716-6594735 Msa0794670:intron 30.0%
CACCAAACTTAAGATTCAAA+GGG - chr5_3:6594967-6594986 None:intergenic 30.0%
TCACCAAACTTAAGATTCAA+AGG - chr5_3:6594968-6594987 None:intergenic 30.0%
! TTTGAATCTTAAGTTTGGTG+AGG + chr5_3:6594967-6594986 Msa0794670:CDS 30.0%
ACAATGCAAAAGTGATTCAT+TGG + chr5_3:6595219-6595238 Msa0794670:intron 30.0%
CAATGCAAAAGTGATTCATT+GGG + chr5_3:6595220-6595239 Msa0794670:intron 30.0%
AAGGATTAAATTTACAGTCC+TGG + chr5_3:6595617-6595636 Msa0794670:intron 30.0%
AGGATTAAATTTACAGTCCT+GGG + chr5_3:6595618-6595637 Msa0794670:intron 30.0%
AAGAGTTAAAATAGTGTGAG+TGG + chr5_3:6595759-6595778 Msa0794670:intron 30.0%
AGAGTTAAAATAGTGTGAGT+GGG + chr5_3:6595760-6595779 Msa0794670:intron 30.0%
AAGATTCCCATACTTTAACA+TGG + chr5_3:6595821-6595840 Msa0794670:intron 30.0%
AGATTCCCATACTTTAACAT+GGG + chr5_3:6595822-6595841 Msa0794670:intron 30.0%
GAACAAGCTCAAAAAAAAAC+TGG + chr5_3:6596347-6596366 Msa0794670:CDS 30.0%
CCAACACAAATATAGACAAA+GGG - chr5_3:6596879-6596898 None:intergenic 30.0%
TCCAACACAAATATAGACAA+AGG - chr5_3:6596880-6596899 None:intergenic 30.0%
AAACTATCCAATGATGAGTA+AGG + chr5_3:6597101-6597120 Msa0794670:intron 30.0%
AACTATCCAATGATGAGTAA+GGG + chr5_3:6597102-6597121 Msa0794670:intron 30.0%
GAAGAATACAAAACAGAGAA+GGG - chr5_3:6597152-6597171 None:intergenic 30.0%
AGAAGAATACAAAACAGAGA+AGG - chr5_3:6597153-6597172 None:intergenic 30.0%
TGCTAACTGTTAAGAGTTTA+TGG + chr5_3:6597188-6597207 Msa0794670:intron 30.0%
AAAGAAGAAAAAGACCAAAG+AGG + chr5_3:6597254-6597273 Msa0794670:CDS 30.0%
TATAACCAATCCATTTGGAT+AGG - chr5_3:6597397-6597416 None:intergenic 30.0%
GTTATAGAGGACATATCTAT+GGG + chr5_3:6597411-6597430 Msa0794670:CDS 30.0%
GGTCAAACAAAATTACACAT+TGG - chr5_3:6597523-6597542 None:intergenic 30.0%
ATAATCCAGTTTCTTCTGAT+AGG + chr5_3:6597549-6597568 Msa0794670:intron 30.0%
! GAAATCCTTGTTTGATATTC+AGG + chr5_3:6597571-6597590 Msa0794670:intron 30.0%
ATACCAAGTCGAAACTTAAA+GGG - chr5_3:6597665-6597684 None:intergenic 30.0%
!!! TTTTATTTTCTTCAGGGATG+AGG + chr5_3:6597889-6597908 Msa0794670:intron 30.0%
!! TTTATTTTCTTCAGGGATGA+GGG + chr5_3:6597890-6597909 Msa0794670:intron 30.0%
AAAGAATATGGCATCTAACA+CGG - chr5_3:6598019-6598038 None:intergenic 30.0%
TTAAATGGGATGACTTTGAT+TGG + chr5_3:6598040-6598059 Msa0794670:intron 30.0%
GCTTATATTTGATGTTGAGT+TGG + chr5_3:6598137-6598156 Msa0794670:CDS 30.0%
!! ATATTTGATGTTGAGTTGGT+TGG + chr5_3:6598141-6598160 Msa0794670:CDS 30.0%
! CGGCAAAAATTTTAAATCAG+CGG - chr5_3:6598176-6598195 None:intergenic 30.0%
TTTCTTTGTCCGTATAATGT+TGG + chr5_3:6598351-6598370 Msa0794670:three_prime_UTR 30.0%
CTAAAACATAAAGGAATGGA+GGG - chr5_3:6598415-6598434 None:intergenic 30.0%
TCACCTAAAACATAAAGGAA+TGG - chr5_3:6598419-6598438 None:intergenic 30.0%
TGCAATCACCTAAAACATAA+AGG - chr5_3:6598424-6598443 None:intergenic 30.0%
AGGTGATTGCAGAAATATTA+AGG + chr5_3:6598433-6598452 Msa0794670:three_prime_UTR 30.0%
! TGGGATTACAATTAGCGTTT+TGG - chr5_3:6593493-6593512 None:intergenic 35.0%
!! TTTTTCAACACTGACGACAA+TGG + chr5_3:6593579-6593598 Msa0794670:exon 35.0%
! TTTTCAACACTGACGACAAT+GGG + chr5_3:6593580-6593599 Msa0794670:exon 35.0%
ACTTCAAATTCAAACGCAGA+TGG - chr5_3:6593835-6593854 None:intergenic 35.0%
TATACTTGAAATGACACTCG+AGG + chr5_3:6594122-6594141 Msa0794670:intron 35.0%
ATACTTGAAATGACACTCGA+GGG + chr5_3:6594123-6594142 Msa0794670:intron 35.0%
!! TTGTCGTTGAATTGGTTTGA+TGG + chr5_3:6594280-6594299 Msa0794670:intron 35.0%
!! GAATTGGTTTGATGGTTACT+TGG + chr5_3:6594288-6594307 Msa0794670:intron 35.0%
AAAAATGATTCGTGCACGTT+TGG + chr5_3:6594373-6594392 Msa0794670:intron 35.0%
! TGTCTGGAGTTTGGTTAATT+GGG + chr5_3:6594748-6594767 Msa0794670:intron 35.0%
!! TAGCCTGAAATTTTAGAGGA+CGG - chr5_3:6594838-6594857 None:intergenic 35.0%
! AGAGTAGCCTGAAATTTTAG+AGG - chr5_3:6594842-6594861 None:intergenic 35.0%
CTAAAATTTCAGGCTACTCT+AGG + chr5_3:6594842-6594861 Msa0794670:intron 35.0%
AGCAAGGAACACAAAAAAAC+TGG - chr5_3:6594923-6594942 None:intergenic 35.0%
TGCCCTTTGAATCTTAAGTT+TGG + chr5_3:6594962-6594981 Msa0794670:CDS 35.0%
GCACAAAATAACCAGAAAGA+TGG - chr5_3:6595033-6595052 None:intergenic 35.0%
!!! CTTTTTTGACGATAGCGATA+TGG + chr5_3:6595309-6595328 Msa0794670:CDS 35.0%
TCATTCTGGACCAAATTTAC+TGG - chr5_3:6595492-6595511 None:intergenic 35.0%
AAATTTGGTCCAGAATGATC+TGG + chr5_3:6595494-6595513 Msa0794670:intron 35.0%
AATTTGGTCCAGAATGATCT+GGG + chr5_3:6595495-6595514 Msa0794670:intron 35.0%
TTCCTAGGAATAATGTTCCA+GGG - chr5_3:6595653-6595672 None:intergenic 35.0%
ATTCCTAGGAATAATGTTCC+AGG - chr5_3:6595654-6595673 None:intergenic 35.0%
TTTATTCCCATGGGAATAAG+AGG - chr5_3:6595802-6595821 None:intergenic 35.0%
! TGGGAATCTTTTATTCCCAT+GGG - chr5_3:6595811-6595830 None:intergenic 35.0%
! ATGGGAATCTTTTATTCCCA+TGG - chr5_3:6595812-6595831 None:intergenic 35.0%
GGATTGCAGAATGTAACATT+GGG - chr5_3:6595923-6595942 None:intergenic 35.0%
TGGATTGCAGAATGTAACAT+TGG - chr5_3:6595924-6595943 None:intergenic 35.0%
!! AAACACCCCCTAAGTTTTAT+CGG + chr5_3:6595950-6595969 Msa0794670:intron 35.0%
GTATACCGATAAAACTTAGG+GGG - chr5_3:6595958-6595977 None:intergenic 35.0%
GGTATACCGATAAAACTTAG+GGG - chr5_3:6595959-6595978 None:intergenic 35.0%
GGGTATACCGATAAAACTTA+GGG - chr5_3:6595960-6595979 None:intergenic 35.0%
TGGGTATACCGATAAAACTT+AGG - chr5_3:6595961-6595980 None:intergenic 35.0%
ATGAGTGGGAGTAAACAATA+AGG - chr5_3:6595984-6596003 None:intergenic 35.0%
CATTCCTGATGCATGAAAAT+AGG + chr5_3:6596001-6596020 Msa0794670:intron 35.0%
! CTTTCCTATTTTCATGCATC+AGG - chr5_3:6596008-6596027 None:intergenic 35.0%
TCACGACTTCAAAAAAGGTA+AGG - chr5_3:6596139-6596158 None:intergenic 35.0%
AGGTGACAATAAGTTTGTCT+TGG + chr5_3:6596238-6596257 Msa0794670:CDS 35.0%
TTGGAAAGTGAAGATGAAGA+TGG + chr5_3:6596257-6596276 Msa0794670:CDS 35.0%
!! AGATTTAGCTTTGTCTGAAG+TGG - chr5_3:6596294-6596313 None:intergenic 35.0%
AAGGCTGAAACAGAAACAAA+AGG + chr5_3:6596323-6596342 Msa0794670:CDS 35.0%
! AACATCTTTTGCCTTCTTCT+TGG - chr5_3:6596378-6596397 None:intergenic 35.0%
! ACTCCTCTATTCATCAGTTT+TGG + chr5_3:6596678-6596697 Msa0794670:intron 35.0%
! CTCCTCTATTCATCAGTTTT+GGG + chr5_3:6596679-6596698 Msa0794670:intron 35.0%
TTCCCAAAACTGATGAATAG+AGG - chr5_3:6596684-6596703 None:intergenic 35.0%
TAAAGCTGTTGTAGAGATGT+TGG + chr5_3:6596724-6596743 Msa0794670:intron 35.0%
CCCTTTGTCTATATTTGTGT+TGG + chr5_3:6596876-6596895 Msa0794670:intron 35.0%
! CAAGTTGAAAGATCATGGTA+AGG + chr5_3:6596962-6596981 Msa0794670:CDS 35.0%
TGAAAACCCTTACTCATCAT+TGG - chr5_3:6597111-6597130 None:intergenic 35.0%
!!! TCTTGTTTTTCTTCTCAACG+AGG - chr5_3:6597230-6597249 None:intergenic 35.0%
!! TCCAAATGGATTGGTTATAG+AGG + chr5_3:6597398-6597417 Msa0794670:CDS 35.0%
TCCTCTATAACCAATCCATT+TGG - chr5_3:6597402-6597421 None:intergenic 35.0%
GGTTATAGAGGACATATCTA+TGG + chr5_3:6597410-6597429 Msa0794670:CDS 35.0%
GATTTCCTATCAGAAGAAAC+TGG - chr5_3:6597557-6597576 None:intergenic 35.0%
ACTGACCTGAATATCAAACA+AGG - chr5_3:6597579-6597598 None:intergenic 35.0%
CATACCAAGTCGAAACTTAA+AGG - chr5_3:6597666-6597685 None:intergenic 35.0%
TATTTATCGTTTGCAGGTGT+AGG + chr5_3:6597751-6597770 Msa0794670:intron 35.0%
ACTTACAATTCCACCATCTA+TGG + chr5_3:6597929-6597948 Msa0794670:CDS 35.0%
CTTACAATTCCACCATCTAT+GGG + chr5_3:6597930-6597949 Msa0794670:CDS 35.0%
TTACAATTCCACCATCTATG+GGG + chr5_3:6597931-6597950 Msa0794670:CDS 35.0%
ACAATTTCATACCCCATAGA+TGG - chr5_3:6597945-6597964 None:intergenic 35.0%
AAGAATATGGCATCTAACAC+GGG - chr5_3:6598018-6598037 None:intergenic 35.0%
TGTTCGTTGTTATGCAGATA+TGG + chr5_3:6598078-6598097 Msa0794670:intron 35.0%
GGAGTATACCACAAAATTCA+TGG + chr5_3:6598115-6598134 Msa0794670:CDS 35.0%
GTGAATTTCCTACCAAACTT+CGG - chr5_3:6598283-6598302 None:intergenic 35.0%
TCCAGACAACCAACATTATA+CGG - chr5_3:6598363-6598382 None:intergenic 35.0%
CCTAAAACATAAAGGAATGG+AGG - chr5_3:6598416-6598435 None:intergenic 35.0%
! CCTCCATTCCTTTATGTTTT+AGG + chr5_3:6598413-6598432 Msa0794670:three_prime_UTR 35.0%
TCCACATCGTCAGTACTATA+CGG - chr5_3:6593754-6593773 None:intergenic 40.0%
!! TATAGTACTGACGATGTGGA+AGG + chr5_3:6593754-6593773 Msa0794670:CDS 40.0%
TTGTACATTCCTTCTGCACA+AGG + chr5_3:6593972-6593991 Msa0794670:intron 40.0%
TACTTGAAATGACACTCGAG+GGG + chr5_3:6594124-6594143 Msa0794670:intron 40.0%
! TTGATGGTTACTTGGCACTT+CGG + chr5_3:6594296-6594315 Msa0794670:intron 40.0%
ACTAAAAACCAAGGCCCATT+TGG - chr5_3:6594583-6594602 None:intergenic 40.0%
! GTGTCTGGAGTTTGGTTAAT+TGG + chr5_3:6594747-6594766 Msa0794670:intron 40.0%
!! TTCCCGTCCTCTAAAATTTC+AGG + chr5_3:6594832-6594851 Msa0794670:intron 40.0%
!! AGCCTGAAATTTTAGAGGAC+GGG - chr5_3:6594837-6594856 None:intergenic 40.0%
! TAAGTTTGGTGAGGATGACT+TGG + chr5_3:6594976-6594995 Msa0794670:CDS 40.0%
AACCAGAAAGATGGATGCTT+CGG - chr5_3:6595024-6595043 None:intergenic 40.0%
CAAAAGTGATTCATTGGGAG+AGG + chr5_3:6595225-6595244 Msa0794670:intron 40.0%
ACAAAATACCTCCACTACTC+CGG - chr5_3:6595357-6595376 None:intergenic 40.0%
! ATAGGGGTGTGTTTGTTTCA+AGG + chr5_3:6595598-6595617 Msa0794670:intron 40.0%
TTCCCTGGAACATTATTCCT+AGG + chr5_3:6595648-6595667 Msa0794670:intron 40.0%
TAGTGTGAGTGGGAAGTTAT+AGG + chr5_3:6595770-6595789 Msa0794670:intron 40.0%
TGGTTACCTCTTATTCCCAT+GGG + chr5_3:6595793-6595812 Msa0794670:intron 40.0%
TGGAAAAGTCATGTGTACCT+AGG + chr5_3:6595854-6595873 Msa0794670:intron 40.0%
TGAAACAAACATGGGAACGT+AGG + chr5_3:6595894-6595913 Msa0794670:intron 40.0%
!!! CTTAGGGGGTGTTTGTTTTA+TGG - chr5_3:6595944-6595963 None:intergenic 40.0%
GTGGGAGTAAACAATAAGGT+GGG - chr5_3:6595980-6595999 None:intergenic 40.0%
AGTGGGAGTAAACAATAAGG+TGG - chr5_3:6595981-6596000 None:intergenic 40.0%
TTCATGCATCAGGAATGAGT+GGG - chr5_3:6595998-6596017 None:intergenic 40.0%
TTTCATGCATCAGGAATGAG+TGG - chr5_3:6595999-6596018 None:intergenic 40.0%
CTCGATCACGACTTCAAAAA+AGG - chr5_3:6596144-6596163 None:intergenic 40.0%
!!! CTTTTTTGAAGTCGTGATCG+AGG + chr5_3:6596142-6596161 Msa0794670:intron 40.0%
TTGTCACCTCTAATGACAAC+TGG - chr5_3:6596227-6596246 None:intergenic 40.0%
! CTTTGTCTGAAGTGGAAATC+GGG - chr5_3:6596286-6596305 None:intergenic 40.0%
! GCTTTGTCTGAAGTGGAAAT+CGG - chr5_3:6596287-6596306 None:intergenic 40.0%
AGCTAAATCTGAGTCTCAGA+AGG + chr5_3:6596304-6596323 Msa0794670:CDS 40.0%
AACTGGGAAATCCAAGAAGA+AGG + chr5_3:6596364-6596383 Msa0794670:CDS 40.0%
AAAAGTTCAAGCTGTCGATG+AGG + chr5_3:6596421-6596440 Msa0794670:CDS 40.0%
!!! AAACTGTTTTTGAGTCCACG+TGG - chr5_3:6596491-6596510 None:intergenic 40.0%
! ACTTTGGGCCTGTTTGATTT+AGG + chr5_3:6596518-6596537 Msa0794670:intron 40.0%
TTGGTGCACTTCCAATTTGT+GGG + chr5_3:6596743-6596762 Msa0794670:intron 40.0%
GAACAATGTCTCACATGCAA+AGG - chr5_3:6596800-6596819 None:intergenic 40.0%
TTGCATGTGAGACATTGTTC+TGG + chr5_3:6596800-6596819 Msa0794670:intron 40.0%
GTTGAAAGATCATGGTAAGG+AGG + chr5_3:6596965-6596984 Msa0794670:CDS 40.0%
ATGAGAGACATTGTTCTGGT+TGG - chr5_3:6597060-6597079 None:intergenic 40.0%
TTGCATGAGAGACATTGTTC+TGG - chr5_3:6597064-6597083 None:intergenic 40.0%
GAACAATGTCTCTCATGCAA+AGG + chr5_3:6597064-6597083 Msa0794670:CDS 40.0%
AATGTCTCTCATGCAAAGGA+TGG + chr5_3:6597068-6597087 Msa0794670:CDS 40.0%
ATGCAAAGGATGGAGATGAT+GGG + chr5_3:6597078-6597097 Msa0794670:CDS 40.0%
AAAAAGACCAAAGAGGCTGA+AGG + chr5_3:6597261-6597280 Msa0794670:CDS 40.0%
AACGTGAGAACCTATCCAAA+TGG + chr5_3:6597384-6597403 Msa0794670:CDS 40.0%
GAGAACCTATCCAAATGGAT+TGG + chr5_3:6597389-6597408 Msa0794670:CDS 40.0%
ATATCTATGGGCAAACCAGA+TGG + chr5_3:6597423-6597442 Msa0794670:CDS 40.0%
AAGAGCTGATCTTGGAAAGA+AGG + chr5_3:6597449-6597468 Msa0794670:CDS 40.0%
CAGGTCAGTGTTAGATATAC+CGG + chr5_3:6597590-6597609 Msa0794670:intron 40.0%
ATTTCATACCCCATAGATGG+TGG - chr5_3:6597942-6597961 None:intergenic 40.0%
AGATATGGTGACAAACGTGT+TGG + chr5_3:6598093-6598112 Msa0794670:intron 40.0%
GATATGGTGACAAACGTGTT+GGG + chr5_3:6598094-6598113 Msa0794670:intron 40.0%
TGCAAACCTCGCATATTCAT+TGG + chr5_3:6598232-6598251 Msa0794670:three_prime_UTR 40.0%
! TCCGTATAATGTTGGTTGTC+TGG + chr5_3:6598359-6598378 Msa0794670:three_prime_UTR 40.0%
! GGTTGTCTGGAGTAATTTGA+TGG + chr5_3:6598372-6598391 Msa0794670:three_prime_UTR 40.0%
ACTGACGACAATGGGATTCT+GGG + chr5_3:6593588-6593607 Msa0794670:exon 45.0%
TCAGGGATTGAAGTGAAACC+TGG + chr5_3:6593718-6593737 Msa0794670:intron 45.0%
TGAAGTGAAACCTGGCAATC+CGG + chr5_3:6593726-6593745 Msa0794670:CDS 45.0%
TCGTCAGTACTATACGGAAC+CGG - chr5_3:6593748-6593767 None:intergenic 45.0%
!! TCCGTATAGTACTGACGATG+TGG + chr5_3:6593750-6593769 Msa0794670:CDS 45.0%
CTTCACGTCACTCAGGTTAT+TGG + chr5_3:6593781-6593800 Msa0794670:intron 45.0%
GACACTTCTGATTGAAGGTG+CGG - chr5_3:6594003-6594022 None:intergenic 45.0%
! GCACCTTCAATCAGAAGTGT+CGG + chr5_3:6594002-6594021 Msa0794670:intron 45.0%
TGATTCGTGCACGTTTGGAT+TGG + chr5_3:6594378-6594397 Msa0794670:intron 45.0%
AAACCAAGGCCCATTTGGAT+GGG - chr5_3:6594578-6594597 None:intergenic 45.0%
AAAACCAAGGCCCATTTGGA+TGG - chr5_3:6594579-6594598 None:intergenic 45.0%
AGCGGATGTATGCTAGATGA+AGG - chr5_3:6594618-6594637 None:intergenic 45.0%
! TTTGCTTGCATTGGCACTTG+AGG + chr5_3:6594725-6594744 Msa0794670:intron 45.0%
! AGAATGCTTTTCTCCGTCGA+TGG - chr5_3:6594875-6594894 None:intergenic 45.0%
ACCAGAAAGATGGATGCTTC+GGG - chr5_3:6595023-6595042 None:intergenic 45.0%
GTAACACACCCAGATCATTC+TGG - chr5_3:6595506-6595525 None:intergenic 45.0%
TTCCAGGGAATGTTATACCC+AGG - chr5_3:6595638-6595657 None:intergenic 45.0%
TGTGAGTGGGAAGTTATAGG+TGG + chr5_3:6595773-6595792 Msa0794670:intron 45.0%
GTGGTTACCTCTTATTCCCA+TGG + chr5_3:6595792-6595811 Msa0794670:intron 45.0%
AAGTGAGCTGTTTGTTCGTC+GGG - chr5_3:6596173-6596192 None:intergenic 45.0%
CAAGTGAGCTGTTTGTTCGT+CGG - chr5_3:6596174-6596193 None:intergenic 45.0%
GCTCACTTGAAAGAGAAACC+CGG + chr5_3:6596185-6596204 Msa0794670:CDS 45.0%
! TGGAAGCTGAGAACTTTTGC+CGG - chr5_3:6596207-6596226 None:intergenic 45.0%
CAGCTTCCAGTTGTCATTAG+AGG + chr5_3:6596218-6596237 Msa0794670:CDS 45.0%
! TCAAACAGGCCCAAAGTATC+TGG - chr5_3:6596515-6596534 None:intergenic 45.0%
GTTGGTGCACTTCCAATTTG+TGG + chr5_3:6596742-6596761 Msa0794670:intron 45.0%
!! GGAGGAAAGTGCTCATGTAA+AGG + chr5_3:6596983-6597002 Msa0794670:CDS 45.0%
TGTGCCAGATGAAAAGTCTG+AGG + chr5_3:6597019-6597038 Msa0794670:CDS 45.0%
! ACCTCCTCAGACTTTTCATC+TGG - chr5_3:6597026-6597045 None:intergenic 45.0%
CATGCAAAGGATGGAGATGA+TGG + chr5_3:6597077-6597096 Msa0794670:CDS 45.0%
! TTAGATGGCTTGGCTTCAGT+TGG - chr5_3:6597366-6597385 None:intergenic 45.0%
GGATAGGTTCTCACGTTAGA+TGG - chr5_3:6597381-6597400 None:intergenic 45.0%
! AGATCAGCTCTTTTGCCATC+TGG - chr5_3:6597441-6597460 None:intergenic 45.0%
GATGGCAAAAGAGCTGATCT+TGG + chr5_3:6597441-6597460 Msa0794670:CDS 45.0%
ACCGGCAAGCTACAAAAAGA+TGG + chr5_3:6597608-6597627 Msa0794670:CDS 45.0%
!! CCCATCTTTTTGTAGCTTGC+CGG - chr5_3:6597612-6597631 None:intergenic 45.0%
CCGGCAAGCTACAAAAAGAT+GGG + chr5_3:6597609-6597628 Msa0794670:CDS 45.0%
! GCACCCTTTAAGTTTCGACT+TGG + chr5_3:6597659-6597678 Msa0794670:CDS 45.0%
AGGTGTAGGACAAGTCATCA+AGG + chr5_3:6597765-6597784 Msa0794670:intron 45.0%
GGTGTAGGACAAGTCATCAA+GGG + chr5_3:6597766-6597785 Msa0794670:intron 45.0%
GTGTAGGACAAGTCATCAAG+GGG + chr5_3:6597767-6597786 Msa0794670:CDS 45.0%
! TTTTCTTCAGGGATGAGGGT+TGG + chr5_3:6597894-6597913 Msa0794670:intron 45.0%
TTTCTTCAGGGATGAGGGTT+GGG + chr5_3:6597895-6597914 Msa0794670:intron 45.0%
CAAAGGCCAATGAATATGCG+AGG - chr5_3:6598241-6598260 None:intergenic 45.0%
CCTGTAAAGTCTAGCGACAA+AGG - chr5_3:6598258-6598277 None:intergenic 45.0%
CCTTTGTCGCTAGACTTTAC+AGG + chr5_3:6598255-6598274 Msa0794670:three_prime_UTR 45.0%
ACTTTACAGGAGCCGAAGTT+TGG + chr5_3:6598268-6598287 Msa0794670:three_prime_UTR 45.0%
CACTGACGACAATGGGATTC+TGG + chr5_3:6593587-6593606 Msa0794670:exon 50.0%
CTGACGACAATGGGATTCTG+GGG + chr5_3:6593589-6593608 Msa0794670:exon 50.0%
AGGAAAGCTTCACGTCACTC+AGG + chr5_3:6593774-6593793 Msa0794670:CDS 50.0%
! TTCTGATTGAAGGTGCGGTG+CGG - chr5_3:6593998-6594017 None:intergenic 50.0%
! GCACCGACACTTCTGATTGA+AGG - chr5_3:6594008-6594027 None:intergenic 50.0%
! CACTTGAGGTGTCTGGAGTT+TGG + chr5_3:6594739-6594758 Msa0794670:intron 50.0%
TTTCAGGCTACTCTAGGCGT+TGG + chr5_3:6594848-6594867 Msa0794670:intron 50.0%
AGCATTCTTCAGTGCGCTTC+TGG + chr5_3:6594887-6594906 Msa0794670:CDS 50.0%
GTGTTCCTTGCTGCCAAACA+AGG + chr5_3:6594931-6594950 Msa0794670:CDS 50.0%
! CTCAACCTTGTTTGGCAGCA+AGG - chr5_3:6594939-6594958 None:intergenic 50.0%
! GTTTGGTGAGGATGACTTGG+TGG + chr5_3:6594979-6594998 Msa0794670:CDS 50.0%
!! GGATGACTTGGTGGCATTCT+CGG + chr5_3:6594988-6595007 Msa0794670:CDS 50.0%
! TCCCGAAGCATCCATCTTTC+TGG + chr5_3:6595019-6595038 Msa0794670:CDS 50.0%
TGATTCATTGGGAGAGGACG+TGG + chr5_3:6595231-6595250 Msa0794670:CDS 50.0%
GATTCATTGGGAGAGGACGT+GGG + chr5_3:6595232-6595251 Msa0794670:CDS 50.0%
TGTACACATCTTCGCCAGTC+CGG + chr5_3:6595335-6595354 Msa0794670:CDS 50.0%
GATCTGGGTGTGTTACATGC+CGG + chr5_3:6595510-6595529 Msa0794670:intron 50.0%
GTCCTGGGTATAACATTCCC+TGG + chr5_3:6595633-6595652 Msa0794670:intron 50.0%
! GGAAGCTGAGAACTTTTGCC+GGG - chr5_3:6596206-6596225 None:intergenic 50.0%
AGGATGAGCAGCTGCAAGAT+GGG + chr5_3:6596441-6596460 Msa0794670:CDS 50.0%
GCCAGATGAAAAGTCTGAGG+AGG + chr5_3:6597022-6597041 Msa0794670:CDS 50.0%
AGCTTCTCCTTCAGCCTCTT+TGG - chr5_3:6597271-6597290 None:intergenic 50.0%
GGTTCTCACGTTAGATGGCT+TGG - chr5_3:6597376-6597395 None:intergenic 50.0%
TAGGACAAGTCATCAAGGGG+TGG + chr5_3:6597770-6597789 Msa0794670:CDS 50.0%
AGGACAAGTCATCAAGGGGT+GGG + chr5_3:6597771-6597790 Msa0794670:CDS 50.0%
TTCTTCAGGGATGAGGGTTG+GGG + chr5_3:6597896-6597915 Msa0794670:intron 50.0%
!! GTTGAGTTGGTTGGCGTTGA+AGG + chr5_3:6598150-6598169 Msa0794670:CDS 50.0%
AGACCAAAACGAAGCCGAAG+CGG - chr5_3:6598196-6598215 None:intergenic 50.0%
TACAGGAGCCGAAGTTTGGT+AGG + chr5_3:6598272-6598291 Msa0794670:three_prime_UTR 50.0%
CTATACGGAACCGGATTGCC+AGG - chr5_3:6593739-6593758 None:intergenic 55.0%
AAGCCCATCCAAATGGGCCT+TGG + chr5_3:6594572-6594591 Msa0794670:intron 55.0%
! GCATTGGCACTTGAGGTGTC+TGG + chr5_3:6594732-6594751 Msa0794670:intron 55.0%
!! TCTAGGCGTTGGTCCATCGA+CGG + chr5_3:6594859-6594878 Msa0794670:CDS 55.0%
GGGCACGTCTCAACCTTGTT+TGG - chr5_3:6594947-6594966 None:intergenic 55.0%
! TTGGTGGCATTCTCGGTCGT+CGG + chr5_3:6594995-6595014 Msa0794670:CDS 55.0%
TCTCTCGTGTCGTCGTCATC+TGG - chr5_3:6595055-6595074 None:intergenic 55.0%
ATACCTCCACTACTCCGGAC+TGG - chr5_3:6595352-6595371 None:intergenic 55.0%
GAGGATGAGCAGCTGCAAGA+TGG + chr5_3:6596440-6596459 Msa0794670:CDS 55.0%
GTCATCAAGGGGTGGGATGT+TGG + chr5_3:6597778-6597797 Msa0794670:CDS 55.0%
!! TTGCCGCTTCGGCTTCGTTT+TGG + chr5_3:6598190-6598209 Msa0794670:three_prime_UTR 55.0%
TTGGGAGAGGACGTGGGAAC+TGG + chr5_3:6595238-6595257 Msa0794670:CDS 60.0%
TGGGAGAGGACGTGGGAACT+GGG + chr5_3:6595239-6595258 Msa0794670:CDS 60.0%
TCTTCGCCAGTCCGGAGTAG+TGG + chr5_3:6595343-6595362 Msa0794670:CDS 60.0%
GGGTGGGATGTTGGCGTCAA+TGG + chr5_3:6597787-6597806 Msa0794670:CDS 60.0%
GGACGTGGGAACTGGGTCAG+AGG + chr5_3:6595246-6595265 Msa0794670:CDS 65.0%
TCGCCAGTCCGGAGTAGTGG+AGG + chr5_3:6595346-6595365 Msa0794670:CDS 65.0%
! GCGGTGCGGCCTTGTGCAGA+AGG - chr5_3:6593984-6594003 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 6593475 6598502 6593475 ID=Msa0794670;Name=Msa0794670
chr5_3 mRNA 6593475 6598502 6593475 ID=Msa0794670-mRNA-1;Parent=Msa0794670;Name=Msa0794670-mRNA-1;_AED=0.06;_eAED=0.06;_QI=123|1|1|1|1|1|11|323|484
chr5_3 exon 6593475 6593610 6593475 ID=Msa0794670-mRNA-1:exon:2649;Parent=Msa0794670-mRNA-1
chr5_3 exon 6593722 6593795 6593722 ID=Msa0794670-mRNA-1:exon:2650;Parent=Msa0794670-mRNA-1
chr5_3 exon 6594854 6595086 6594854 ID=Msa0794670-mRNA-1:exon:2651;Parent=Msa0794670-mRNA-1
chr5_3 exon 6595231 6595367 6595231 ID=Msa0794670-mRNA-1:exon:2652;Parent=Msa0794670-mRNA-1
chr5_3 exon 6596153 6596462 6596153 ID=Msa0794670-mRNA-1:exon:2653;Parent=Msa0794670-mRNA-1
chr5_3 exon 6596941 6597117 6596941 ID=Msa0794670-mRNA-1:exon:2654;Parent=Msa0794670-mRNA-1
chr5_3 exon 6597224 6597470 6597224 ID=Msa0794670-mRNA-1:exon:2655;Parent=Msa0794670-mRNA-1
chr5_3 exon 6597593 6597680 6597593 ID=Msa0794670-mRNA-1:exon:2656;Parent=Msa0794670-mRNA-1
chr5_3 exon 6597767 6597808 6597767 ID=Msa0794670-mRNA-1:exon:2657;Parent=Msa0794670-mRNA-1
chr5_3 exon 6597904 6597952 6597904 ID=Msa0794670-mRNA-1:exon:2658;Parent=Msa0794670-mRNA-1
chr5_3 exon 6598095 6598502 6598095 ID=Msa0794670-mRNA-1:exon:2659;Parent=Msa0794670-mRNA-1
chr5_3 five_prime_UTR 6593475 6593597 6593475 ID=Msa0794670-mRNA-1:five_prime_utr;Parent=Msa0794670-mRNA-1
chr5_3 CDS 6593598 6593610 6593598 ID=Msa0794670-mRNA-1:cds;Parent=Msa0794670-mRNA-1
chr5_3 CDS 6593722 6593795 6593722 ID=Msa0794670-mRNA-1:cds;Parent=Msa0794670-mRNA-1
chr5_3 CDS 6594854 6595086 6594854 ID=Msa0794670-mRNA-1:cds;Parent=Msa0794670-mRNA-1
chr5_3 CDS 6595231 6595367 6595231 ID=Msa0794670-mRNA-1:cds;Parent=Msa0794670-mRNA-1
chr5_3 CDS 6596153 6596462 6596153 ID=Msa0794670-mRNA-1:cds;Parent=Msa0794670-mRNA-1
chr5_3 CDS 6596941 6597117 6596941 ID=Msa0794670-mRNA-1:cds;Parent=Msa0794670-mRNA-1
chr5_3 CDS 6597224 6597470 6597224 ID=Msa0794670-mRNA-1:cds;Parent=Msa0794670-mRNA-1
chr5_3 CDS 6597593 6597680 6597593 ID=Msa0794670-mRNA-1:cds;Parent=Msa0794670-mRNA-1
chr5_3 CDS 6597767 6597808 6597767 ID=Msa0794670-mRNA-1:cds;Parent=Msa0794670-mRNA-1
chr5_3 CDS 6597904 6597952 6597904 ID=Msa0794670-mRNA-1:cds;Parent=Msa0794670-mRNA-1
chr5_3 CDS 6598095 6598179 6598095 ID=Msa0794670-mRNA-1:cds;Parent=Msa0794670-mRNA-1
chr5_3 three_prime_UTR 6598180 6598502 6598180 ID=Msa0794670-mRNA-1:three_prime_utr;Parent=Msa0794670-mRNA-1
Gene Sequence

>Msa0794670

ATGGGATTCTGGGGGATTGAAGTGAAACCTGGCAATCCGGTTCCGTATAGTACTGACGATGTGGAAGGAAAGCTTCACGTCACTCAGGCTACTCTAGGCGTTGGTCCATCGACGGAGAAAAGCATTCTTCAGTGCGCTTCTGGACGCAAAAATCCAGTTTTTTTGTGTTCCTTGCTGCCAAACAAGGTTGAGACGTGCCCTTTGAATCTTAAGTTTGGTGAGGATGACTTGGTGGCATTCTCGGTCGTCGGTTCCCGAAGCATCCATCTTTCTGGTTATTTTGTGCCAGATGACGACGACACGAGAGATGACTATGAATATGATTCATTGGGAGAGGACGTGGGAACTGGGTCAGAGGAGTCATCTGAATTTGATAGTGAAAATGGATATGATGATCACTTTTTTGACGATAGCGATATGGAAATGTACACATCTTCGCCAGTCCGGAGTAGTGGAGTCGTGATCGAGGAAATACCCGACGAACAAACAGCTCACTTGAAAGAGAAACCCGGCAAAAGTTCTCAGCTTCCAGTTGTCATTAGAGGTGACAATAAGTTTGTCTTGGAAAGTGAAGATGAAGATGGTTTCCCGATTTCCACTTCAGACAAAGCTAAATCTGAGTCTCAGAAGGCTGAAACAGAAACAAAAGGAGAACAAGCTCAAAAAAAAACTGGGAAATCCAAGAAGAAGGCAAAAGATGTTGATGAGTCTGCTAGCTTAAAACGAAAAGTTCAAGCTGTCGATGAGGATGAGCAGCTGCAAGATGGGAAAAAGAAGAAGAAGAAAAACAAGTTGAAAGATCATGGTAAGGAGGAAAGTGCTCATGTAAAGGAGACTAATGTTACTGTGCCAGATGAAAAGTCTGAGGAGGTTAAAACTACAACCAACCAGAACAATGTCTCTCATGCAAAGGATGGAGATGATGGGAAACTATCCAATGATGAAGTCCTCGTTGAGAAGAAAAACAAGAAGAAAAAGAAGAAAAAGACCAAAGAGGCTGAAGGAGAAGCTGCTAAGAATGAAATTGCTACAACTGTTGAAAATCAGAAGTTGTCTACATCTGAGAAGAAAAAAGAGAAAGAACCAACTGAAGCCAAGCCATCTAACGTGAGAACCTATCCAAATGGATTGGTTATAGAGGACATATCTATGGGCAAACCAGATGGCAAAAGAGCTGATCTTGGAAAGAAGGTCAGTGTTAGATATACCGGCAAGCTACAAAAAGATGGGAAAATATTTGACTCGTGTATTGGAAAAGCACCCTTTAAGTTTCGACTTGGTGTAGGACAAGTCATCAAGGGGTGGGATGTTGGCGTCAATGGGATGAGGGTTGGGGACAAAAGAAGACTTACAATTCCACCATCTATGGGATATGGTGACAAACGTGTTGGGAGTATACCACAAAATTCATGGCTTATATTTGATGTTGAGTTGGTTGGCGTTGAAGGCCGCTGA

Protein sequence

>Msa0794670

MGFWGIEVKPGNPVPYSTDDVEGKLHVTQATLGVGPSTEKSILQCASGRKNPVFLCSLLPNKVETCPLNLKFGEDDLVAFSVVGSRSIHLSGYFVPDDDDTRDDYEYDSLGEDVGTGSEESSEFDSENGYDDHFFDDSDMEMYTSSPVRSSGVVIEEIPDEQTAHLKEKPGKSSQLPVVIRGDNKFVLESEDEDGFPISTSDKAKSESQKAETETKGEQAQKKTGKSKKKAKDVDESASLKRKVQAVDEDEQLQDGKKKKKKNKLKDHGKEESAHVKETNVTVPDEKSEEVKTTTNQNNVSHAKDGDDGKLSNDEVLVEKKNKKKKKKKTKEAEGEAAKNEIATTVENQKLSTSEKKKEKEPTEAKPSNVRTYPNGLVIEDISMGKPDGKRADLGKKVSVRYTGKLQKDGKIFDSCIGKAPFKFRLGVGQVIKGWDVGVNGMRVGDKRRLTIPPSMGYGDKRVGSIPQNSWLIFDVELVGVEGR*