AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0781890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0781890 MtrunA17_Chr5g0433761 91.592 559 11 3 1 523 1 559 0.0 1035
Msa0781890 MtrunA17_Chr3g0109841 75.623 562 98 4 1 523 1 562 0.0 865
Msa0781890 MtrunA17_Chr6g0481131 65.814 547 151 3 13 523 15 561 0.0 729
Msa0781890 MtrunA17_Chr6g0481171 66.434 429 113 2 126 523 5 433 0.0 565
Msa0781890 MtrunA17_Chr1g0195241 52.481 524 214 3 34 522 16 539 0.0 550
Msa0781890 MtrunA17_Chr7g0269581 49.362 549 240 4 9 522 9 554 0.0 546
Msa0781890 MtrunA17_Chr2g0301621 48.913 552 245 4 6 522 3 552 0.0 541
Msa0781890 MtrunA17_Chr4g0070011 48.556 554 248 4 4 522 3 554 0.0 538
Msa0781890 MtrunA17_Chr4g0009181 50.746 67 32 1 7 72 10 76 2.02e-16 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0781890 AT1G73370.3 64.919 553 158 3 7 523 9 561 0.0 752
Msa0781890 AT1G73370.1 64.919 553 158 3 7 523 9 561 0.0 752
Msa0781890 AT5G37180.1 63.845 567 162 6 10 539 5 565 0.0 730
Msa0781890 AT1G73370.2 65.571 517 142 3 43 523 1 517 0.0 700
Msa0781890 AT4G02280.1 50.272 551 239 3 7 522 6 556 0.0 565
Msa0781890 AT5G49190.1 48.829 555 237 5 9 522 5 553 0.0 538
Msa0781890 AT5G49190.2 50.188 532 218 5 32 522 18 543 0.0 531
Msa0781890 AT5G37180.2 68.074 379 88 3 192 539 1 377 0.0 530
Msa0781890 AT5G49190.3 52.990 485 193 3 73 522 3 487 1.06e-178 521
Msa0781890 AT5G20830.3 48.551 552 245 5 7 522 8 556 1.97e-176 518
Msa0781890 AT5G20830.2 48.551 552 245 5 7 522 8 556 1.97e-176 518
Msa0781890 AT5G20830.1 48.551 552 245 5 7 522 8 556 1.97e-176 518
Msa0781890 AT3G43190.2 47.559 553 251 5 6 522 7 556 2.64e-173 510
Msa0781890 AT3G43190.1 47.559 553 251 5 6 522 7 556 2.64e-173 510
Msa0781890 AT5G37180.3 71.340 321 75 2 234 539 1 319 1.18e-164 480

Find 178 sgRNAs with CRISPR-Local

Find 454 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCAGTTCATGGTTATTT+TGG 0.070641 5_2:-64552712 Msa0781890:CDS
TGCAAACAAGTTGGTAAATA+TGG 0.130999 5_2:-64549880 Msa0781890:three_prime_UTR
TTCCATTAGGTCCAAAATTT+TGG 0.135688 5_2:+64551790 None:intergenic
TAATTTCTTATTCAAGAATT+TGG 0.152548 5_2:-64549781 Msa0781890:intron
GGGCTATGTAGGGTTGTTTC+AGG 0.160248 5_2:-64551248 Msa0781890:CDS
GAAGAAGACAAGGTTAATTT+AGG 0.178184 5_2:+64554143 None:intergenic
GGACGCAACAACCAAAATTT+TGG 0.199403 5_2:-64551801 Msa0781890:CDS
CTTGCCATCGAGAAGATTAT+TGG 0.212816 5_2:+64550597 None:intergenic
GACTTTGGAGCATTTGATAT+TGG 0.226670 5_2:-64554170 Msa0781890:CDS
AAATTTGGTGGCATCATTAA+TGG 0.240820 5_2:-64551729 Msa0781890:CDS
CAAACCTTCCAGCAATTTCT+TGG 0.245784 5_2:+64551424 None:intergenic
AAATTACACAGATGGAAATT+TGG 0.250139 5_2:-64551744 Msa0781890:CDS
GGTTATTACTTGGAGCTTAA+TGG 0.250589 5_2:-64548483 Msa0781890:three_prime_UTR
TTCAAGGACAACTGGGAAAT+TGG 0.253007 5_2:-64554081 Msa0781890:CDS
TGACGTGAGAAGTGATATTT+AGG 0.263286 5_2:+64551504 None:intergenic
GGGAAGCCAGATCTTGTTAT+TGG 0.282391 5_2:-64551767 Msa0781890:CDS
TGGGGAACACTTACACCTTT+TGG 0.282985 5_2:-64549860 Msa0781890:three_prime_UTR
CATGCTGCATTTACTCTTCC+AGG 0.290131 5_2:-64551269 Msa0781890:CDS
GGTTGCTTGCCAACTGGTTT+TGG 0.291946 5_2:+64549615 None:intergenic
CATATGTAGCCTTTGCAATT+AGG 0.299383 5_2:-64554780 Msa0781890:CDS
ATCACTAATTTGAATATTGT+TGG 0.299386 5_2:+64552736 None:intergenic
CATGAAACTTCAAGAATTAA+TGG 0.308031 5_2:-64555143 Msa0781890:CDS
CTTCCTTTCAGGTTATTACT+TGG 0.312619 5_2:-64548493 Msa0781890:intron
ACTTTGGAGCATTTGATATT+GGG 0.313644 5_2:-64554169 Msa0781890:CDS
TTAACCTTGTCTTCTTCAAT+TGG 0.317572 5_2:-64554137 Msa0781890:CDS
ATAACAGGTTGTTTACATAT+TGG 0.318845 5_2:-64552359 Msa0781890:intron
TTAGTGATCTTCTCAGTTCA+TGG 0.320915 5_2:-64552721 Msa0781890:CDS
TTCTTAACTTCAAGGACAAC+TGG 0.323354 5_2:-64554089 Msa0781890:CDS
TTGTCTTCTTCAATTGGAAA+TGG 0.326217 5_2:-64554131 Msa0781890:CDS
CTTTATCTTGTAGCTATACT+TGG 0.335874 5_2:-64549911 Msa0781890:intron
CCTGCTTTGTATGAAGCATT+TGG 0.338153 5_2:-64550300 Msa0781890:three_prime_UTR
TTTGGGCAAGCAGATGTTCT+TGG 0.338987 5_2:-64552694 Msa0781890:CDS
AAATGAAAGAAATTATGTTT+TGG 0.349393 5_2:-64555092 Msa0781890:CDS
TATCTCTTAATTTCTTTCAA+TGG 0.354240 5_2:-64555287 Msa0781890:exon
TTTCAAAGTTCTTAACTTCA+AGG 0.358243 5_2:-64554097 Msa0781890:CDS
GGTGAAATTGAGAGTGTCTT+TGG 0.358348 5_2:+64551144 None:intergenic
ACACCCTTTCCTTGAATTTG+AGG 0.366684 5_2:+64554680 None:intergenic
GCAAAGTAGACCCATCATAT+TGG 0.374838 5_2:-64550119 Msa0781890:three_prime_UTR
ATCAAAAGATAGAGAGGAAA+TGG 0.388957 5_2:-64550463 Msa0781890:three_prime_UTR
TCACTTCTCACGTCAATTCA+TGG 0.389404 5_2:-64551496 Msa0781890:CDS
GGAGGTTCATCACTTGGAAT+AGG 0.389616 5_2:+64549636 None:intergenic
ATAAGAAATTATAGAACATA+TGG 0.396630 5_2:+64549793 None:intergenic
GCAAACAAGTTGGTAAATAT+GGG 0.397058 5_2:-64549879 Msa0781890:three_prime_UTR
AGCAATTTCTTGGTATGTAC+TGG 0.397249 5_2:+64551434 None:intergenic
TAAAGAATTTGTGCGCTTCA+AGG 0.397654 5_2:+64555252 None:intergenic
ATTTCTAGGTTCACTGGATC+CGG 0.401056 5_2:+64552775 None:intergenic
TCATTAATGGCTAGAAAACT+TGG 0.402888 5_2:-64551716 Msa0781890:CDS
TTACTCTTCCAGGGCTATGT+AGG 0.411179 5_2:-64551259 Msa0781890:CDS
TTAGGCCTAATCCAGGAGTC+TGG 0.411626 5_2:-64554762 Msa0781890:CDS
TTCATTTATGCGCTGCAATC+CGG 0.411646 5_2:+64550080 None:intergenic
TAGCAAAGCACTTCTTCATA+TGG 0.418506 5_2:+64555191 None:intergenic
TGTTATCTACTTTGTTAAAG+AGG 0.418907 5_2:+64551105 None:intergenic
ATAATTGTTGATGGTGTCTC+AGG 0.422446 5_2:-64550207 Msa0781890:three_prime_UTR
TTTACCTGGCCACCAGTGTC+TGG 0.422921 5_2:+64552667 None:intergenic
GATCTGGCTTCCCTTCCATT+AGG 0.423211 5_2:+64551777 None:intergenic
AGACTCACCACAAGAATTTG+AGG 0.424284 5_2:+64552271 None:intergenic
TGATCCTTCTCCCTTTCTCT+AGG 0.427018 5_2:+64555164 None:intergenic
ACTTAAGTGGGTTAGTTGAA+TGG 0.428392 5_2:-64550557 Msa0781890:three_prime_UTR
TAATTTCCAATAACAAGATC+TGG 0.429386 5_2:+64551761 None:intergenic
CAATGTGGATTGTGAACGTC+TGG 0.431421 5_2:+64548779 None:intergenic
ACGTAGAATGTGAGAGTGTT+TGG 0.432164 5_2:+64552103 None:intergenic
AATGCATTTGAAGCAGACTT+TGG 0.434330 5_2:-64554185 Msa0781890:CDS
GAAATCACGTTCCAATATGA+TGG 0.435511 5_2:+64550108 None:intergenic
CTTCTTCCAAAGCCTTGACT+TGG 0.437629 5_2:+64552335 None:intergenic
ATTGGACCAAGTCAAGGCTT+TGG 0.438859 5_2:-64552341 Msa0781890:CDS
CTACTCTGCTTCAATGCATC+AGG 0.439087 5_2:+64555217 None:intergenic
AGATAATGCAGGAAGGGTGA+AGG 0.439483 5_2:-64552833 Msa0781890:intron
CGATGCATTGCTGACTCAAA+GGG 0.446727 5_2:-64550336 Msa0781890:three_prime_UTR
ATTCCTTTCTCTGTATGAAA+AGG 0.447223 5_2:+64552077 None:intergenic
CCATCAACAATTATTTCTGC+TGG 0.448191 5_2:+64550216 None:intergenic
GGTTCACTGGATCCGGAGCT+TGG 0.459186 5_2:+64552782 None:intergenic
CTTGCCAGACACTGGTGGCC+AGG 0.463571 5_2:-64552671 Msa0781890:intron
TTTGTTAACTTGCTTCCAAA+AGG 0.466022 5_2:+64549845 None:intergenic
GTGAACCTTGTCATAGTTGG+TGG 0.468895 5_2:-64550504 Msa0781890:three_prime_UTR
CACTTAGTTCCTCTAGCATC+AGG 0.468958 5_2:+64552155 None:intergenic
TGTACTGGTTATGATAAAAT+CGG 0.469449 5_2:+64551449 None:intergenic
AGAGTTGGTTGCTTGCCAAC+TGG 0.472054 5_2:+64549609 None:intergenic
TACTCTTCCAGGGCTATGTA+GGG 0.473850 5_2:-64551258 Msa0781890:CDS
TACTCCCAGACTCCTGGATT+AGG 0.474616 5_2:+64554757 None:intergenic
CATTGATTGGTTCAAACTCC+TGG 0.474899 5_2:+64552129 None:intergenic
CACAGATTACCTCAAATTCA+AGG 0.476544 5_2:-64554689 Msa0781890:CDS
GAGTGTTTGGTATCATTGAT+TGG 0.478819 5_2:+64552116 None:intergenic
CGTACATACTCCCAGACTCC+TGG 0.479613 5_2:+64554751 None:intergenic
CTTGAATTTGAGGTAATCTG+TGG 0.479667 5_2:+64554690 None:intergenic
GAAAGGAATCTTGCGCCAAT+GGG 0.483913 5_2:-64552063 Msa0781890:intron
AAGAGGAGATCTTCAATAGC+AGG 0.484163 5_2:+64551122 None:intergenic
AGAAAGGAATCTTGCGCCAA+TGG 0.485834 5_2:-64552064 Msa0781890:CDS
AGTACATACCAAGAAATTGC+TGG 0.486522 5_2:-64551432 Msa0781890:CDS
CCAGCAGAAATAATTGTTGA+TGG 0.490757 5_2:-64550216 Msa0781890:three_prime_UTR
ATGAAGACTCAGATGTTAAG+TGG 0.491444 5_2:-64551539 Msa0781890:CDS
GTTCACAATCCACATTGAAA+AGG 0.494536 5_2:-64548773 Msa0781890:intron
CTAATTGCAAAGGCTACATA+TGG 0.497187 5_2:+64554781 None:intergenic
AGGTGCAGCTATATTGAACT+TGG 0.502677 5_2:+64551208 None:intergenic
GAGCCTTGTTGTTTGAGAGT+TGG 0.508078 5_2:+64549594 None:intergenic
GTTATTGGAAATTACACAGA+TGG 0.508428 5_2:-64551752 Msa0781890:CDS
AGTGGGTTAGTTGAATGGTA+TGG 0.508647 5_2:-64550552 Msa0781890:three_prime_UTR
GCATGGCTTTCATACTGTCC+AGG 0.512596 5_2:+64551287 None:intergenic
TTGAATTTGAGGTAATCTGT+GGG 0.512878 5_2:+64554691 None:intergenic
CTTGATTCATCTCCATTGAG+AGG 0.513096 5_2:+64550171 None:intergenic
GGCTATGTAGGGTTGTTTCA+GGG 0.514946 5_2:-64551247 Msa0781890:CDS
TTACCTCAAATTCAAGGAAA+GGG 0.515471 5_2:-64554683 Msa0781890:CDS
GTTCTTGGCTTGCCAGACAC+TGG 0.515609 5_2:-64552679 Msa0781890:CDS
ATCAGAAGTACTCCAAGCTC+CGG 0.522664 5_2:-64552794 Msa0781890:CDS
TTCCACATTGATCCTCTCAA+TGG 0.523550 5_2:-64550183 Msa0781890:three_prime_UTR
TCAAGAATTAATGGAAGAAG+TGG 0.528474 5_2:-64555134 Msa0781890:CDS
GGCAAAAGCACAGACTATAG+TGG 0.530206 5_2:-64554060 Msa0781890:CDS
CTTAACTTTGACAGGTAACA+AGG 0.533143 5_2:-64552184 Msa0781890:intron
TTGTTAAAACTAAATCATCA+TGG 0.535968 5_2:-64554032 Msa0781890:CDS
TTTGCTAAGTACCTAGAGAA+AGG 0.536077 5_2:-64555175 Msa0781890:CDS
CCTTGATTAGTAGCAAAAGT+TGG 0.536164 5_2:+64550243 None:intergenic
ATTACCTCAAATTCAAGGAA+AGG 0.536681 5_2:-64554684 Msa0781890:CDS
TTGGTGAACCTTGTCATAGT+TGG 0.540805 5_2:-64550507 Msa0781890:three_prime_UTR
CTCGGCTGCAAAGCTTCAGA+TGG 0.543389 5_2:-64553874 Msa0781890:CDS
GAAGATCTATGCAAACAAGT+TGG 0.543446 5_2:-64549889 Msa0781890:three_prime_UTR
TCGATGCATTGCTGACTCAA+AGG 0.544831 5_2:-64550337 Msa0781890:three_prime_UTR
CTCTCAAACAACAAGGCTCT+AGG 0.545501 5_2:-64549590 Msa0781890:intron
TTATAAACCAATATAAAAGA+AGG 0.546347 5_2:+64548386 None:intergenic
GTGCGCTTCAAGGTATGTGT+TGG 0.550745 5_2:+64555262 None:intergenic
TTACACAGATGGAAATTTGG+TGG 0.550864 5_2:-64551741 Msa0781890:CDS
GAAACAACCCTACATAGCCC+TGG 0.551996 5_2:+64551251 None:intergenic
GATGTTGTGAAGAACTTAAG+TGG 0.553221 5_2:-64550570 Msa0781890:three_prime_UTR
TTCAAAATCAAAAGATAGAG+AGG 0.553369 5_2:-64550469 Msa0781890:three_prime_UTR
CTTGGCTTGCCAGACACTGG+TGG 0.554446 5_2:-64552676 Msa0781890:CDS
TAGGCCTAATCCAGGAGTCT+GGG 0.556349 5_2:-64554761 Msa0781890:CDS
TTCTAAGAATTAAGCAACAA+GGG 0.558053 5_2:-64552306 Msa0781890:CDS
TATAAACTCAGAAATAATGA+TGG 0.559092 5_2:+64555337 None:intergenic
AACTAAAGGGACAATTCAGA+TGG 0.563580 5_2:-64550401 Msa0781890:three_prime_UTR
TTATAAACCTCAAATTCTTG+TGG 0.564326 5_2:-64552278 Msa0781890:intron
TTTGCAATTAGGCCTAATCC+AGG 0.566483 5_2:-64554769 Msa0781890:CDS
CAATAATCTTCTCGATGGCA+AGG 0.566855 5_2:-64550596 Msa0781890:CDS
GATAAATGACACGTTGAGCT+CGG 0.568356 5_2:-64553892 Msa0781890:CDS
TTGCTAAGTACCTAGAGAAA+GGG 0.568510 5_2:-64555174 Msa0781890:CDS
ATTGCAAAGGCTACATATGG+TGG 0.571806 5_2:+64554784 None:intergenic
CCAAATGCTTCATACAAAGC+AGG 0.573499 5_2:+64550300 None:intergenic
GATTGCAGCGCATAAATGAA+TGG 0.573820 5_2:-64550077 Msa0781890:intron
GAATAAGAGACTAAGAAACT+TGG 0.575984 5_2:-64550526 Msa0781890:three_prime_UTR
CTTTATATTGAGCTCTACAC+AGG 0.580216 5_2:-64555056 Msa0781890:intron
TAGATACTTTGATCGGCACC+AGG 0.582476 5_2:+64551188 None:intergenic
TCATGCTGAATATTGATCCT+CGG 0.582916 5_2:-64548420 Msa0781890:three_prime_UTR
GTGGATATCTAGCAGAGAAG+AGG 0.585549 5_2:-64550623 Msa0781890:CDS
ATGCTGCATTTACTCTTCCA+GGG 0.587067 5_2:-64551268 Msa0781890:CDS
TCTTAACTTCAAGGACAACT+GGG 0.587344 5_2:-64554088 Msa0781890:CDS
CATTAATGGCTAGAAAACTT+GGG 0.588048 5_2:-64551715 Msa0781890:CDS
TGGAACGTGATTTCTGCGGC+CGG 0.591424 5_2:-64550099 Msa0781890:three_prime_UTR
AAATCACGTTCCAATATGAT+GGG 0.592482 5_2:+64550109 None:intergenic
GAAACCAATAATCTTCTCGA+TGG 0.592864 5_2:-64550601 Msa0781890:CDS
ATTCTAAGAATTAAGCAACA+AGG 0.594252 5_2:-64552307 Msa0781890:CDS
TTACATATTGGACCAAGTCA+AGG 0.606244 5_2:-64552347 Msa0781890:CDS
TAGAAAACTTGGGATAACTC+AGG 0.607985 5_2:-64551705 Msa0781890:intron
TAGAGGAACTAAGTGCCACC+AGG 0.609338 5_2:-64552147 Msa0781890:CDS
CAAACAAGTTGGTAAATATG+GGG 0.611526 5_2:-64549878 Msa0781890:three_prime_UTR
TGGATTAGGCCTAATTGCAA+AGG 0.614592 5_2:+64554771 None:intergenic
ATTTCCAATTGAAGAAGACA+AGG 0.616302 5_2:+64554133 None:intergenic
CTCAGAGGACCTCTCTGTTG+AGG 0.621036 5_2:-64554722 Msa0781890:CDS
AGTACCTAGAGAAAGGGAGA+AGG 0.621869 5_2:-64555168 Msa0781890:CDS
AGTTAACAAAGAGCAAAATG+AGG 0.623039 5_2:-64549832 Msa0781890:three_prime_UTR
ATGTTGTGAAGAACTTAAGT+GGG 0.624389 5_2:-64550569 Msa0781890:three_prime_UTR
GATGAACCTCCAAAACCAGT+TGG 0.627880 5_2:-64549624 Msa0781890:three_prime_UTR
CAACCAACTCTCAAACAACA+AGG 0.628977 5_2:-64549597 Msa0781890:three_prime_UTR
AGAGGAGATCTTCAATAGCA+GGG 0.629949 5_2:+64551123 None:intergenic
AAGTTCAATATAGCTGCACC+TGG 0.631221 5_2:-64551206 Msa0781890:CDS
AGGGAAATAGATACTTTGAT+CGG 0.639658 5_2:+64551181 None:intergenic
GGTGCAGCTATATTGAACTT+GGG 0.641192 5_2:+64551209 None:intergenic
GAATTTGAGGTAATCTGTGG+GGG 0.644323 5_2:+64554693 None:intergenic
CTGGAAGAGTAAATGCAGCA+TGG 0.646190 5_2:+64551270 None:intergenic
TGATTGGTTCAAACTCCTGG+TGG 0.652035 5_2:+64552132 None:intergenic
CATACCAAGAAATTGCTGGA+AGG 0.653894 5_2:-64551428 Msa0781890:intron
TGAATTTGAGGTAATCTGTG+GGG 0.661174 5_2:+64554692 None:intergenic
TGAATAAAATGATGTGTGTG+AGG 0.667077 5_2:-64548302 Msa0781890:three_prime_UTR
AGAAGGTGTATATACATCCG+AGG 0.668922 5_2:+64548403 None:intergenic
CTCCATTGAGAGGATCAATG+TGG 0.693616 5_2:+64550181 None:intergenic
GTCATTGAAGCAATGAACTG+TGG 0.697770 5_2:-64550270 Msa0781890:three_prime_UTR
CAGACTGATCGATATCGCAA+CGG 0.702884 5_2:-64550369 Msa0781890:three_prime_UTR
GTATGTACGTGTCAACTCAG+AGG 0.705934 5_2:-64554737 Msa0781890:CDS
ATATTGGAACGTGATTTCTG+CGG 0.707520 5_2:-64550103 Msa0781890:three_prime_UTR
AGAAGCCACCAACTATGACA+AGG 0.713700 5_2:+64550499 None:intergenic
GGGTGATAGCCTCAACAGAG+AGG 0.723003 5_2:+64554713 None:intergenic
AGGTTGATACCTGATGCTAG+AGG 0.743701 5_2:-64552164 Msa0781890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATATTTTGTCTAAT+AGG - chr5_2:64548615-64548634 Msa0781890:intron 10.0%
!!! TCAAGAATAATATTTTTTTT+GGG + chr5_2:64550110-64550129 None:intergenic 10.0%
!!! TTCAAGAATAATATTTTTTT+TGG + chr5_2:64550111-64550130 None:intergenic 10.0%
!!! ATAATTTTTATTGTTGAAAA+AGG + chr5_2:64550308-64550327 None:intergenic 10.0%
!!! AAAATTGAACAATTTTTATA+AGG - chr5_2:64550594-64550613 Msa0781890:CDS 10.0%
!! AAACAAACATATTAAATTTA+AGG + chr5_2:64550667-64550686 None:intergenic 10.0%
!!! AATTTTAATTATAAGTAGTA+AGG - chr5_2:64551023-64551042 Msa0781890:intron 10.0%
!! AACAAATATTAATAAATGAA+AGG + chr5_2:64552257-64552276 None:intergenic 10.0%
!! AACAGTAAAAAAAAATTAAA+GGG + chr5_2:64553644-64553663 None:intergenic 10.0%
!! AAACAGTAAAAAAAAATTAA+AGG + chr5_2:64553645-64553664 None:intergenic 10.0%
!! CAAATAAAAAAATATTGTTT+CGG - chr5_2:64554135-64554154 Msa0781890:CDS 10.0%
!! AAGATTATATAAATAAATCT+AGG + chr5_2:64555082-64555101 None:intergenic 10.0%
!! TAGATTTATTTATATAATCT+TGG - chr5_2:64555081-64555100 Msa0781890:CDS 10.0%
!!! AAATGAAAGAAATTATGTTT+TGG - chr5_2:64548554-64548573 Msa0781890:intron 15.0%
!!! TTAACATTTTCTATATTGTA+GGG - chr5_2:64549427-64549446 Msa0781890:intron 15.0%
!!! CAAGAATAATATTTTTTTTG+GGG + chr5_2:64550109-64550128 None:intergenic 15.0%
!! ATTGATAGATTTATTTGTAT+TGG - chr5_2:64550245-64550264 Msa0781890:three_prime_UTR 15.0%
!! AAACAATTATTGATGAAATT+GGG - chr5_2:64550421-64550440 Msa0781890:three_prime_UTR 15.0%
!! TAATCTCTAACAAAAAATTA+AGG + chr5_2:64550523-64550542 None:intergenic 15.0%
!! ACCTAAAAAAATGAAATTTA+TGG - chr5_2:64550622-64550641 Msa0781890:CDS 15.0%
!! CCTAAAAAAATGAAATTTAT+GGG - chr5_2:64550623-64550642 Msa0781890:CDS 15.0%
!! AAAAAATTCTTCTTTATAGT+TGG - chr5_2:64550692-64550711 Msa0781890:intron 15.0%
!! ATTAAAATTAATGTTCCTTA+TGG + chr5_2:64551012-64551031 None:intergenic 15.0%
!!! AAAACTAAAGTATTAAAAGT+TGG - chr5_2:64551225-64551244 Msa0781890:CDS 15.0%
!! ATTAATATCAACCAAAATAT+TGG + chr5_2:64551824-64551843 None:intergenic 15.0%
!!! ATATTTTGGTTGATATTAAT+AGG - chr5_2:64551824-64551843 Msa0781890:intron 15.0%
!! ATAAGAAATTATAGAACATA+TGG + chr5_2:64553856-64553875 None:intergenic 15.0%
!! TAATTTCTTATTCAAGAATT+TGG - chr5_2:64553865-64553884 Msa0781890:CDS 15.0%
!!! ATTTTGTTTTAGAATTTTAG+AGG - chr5_2:64554093-64554112 Msa0781890:CDS 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG + chr5_2:64554498-64554517 None:intergenic 15.0%
!! AAAAAAAGTTATTATTGCAT+TGG + chr5_2:64554538-64554557 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + chr5_2:64554600-64554619 None:intergenic 15.0%
!! AAACTAACAAATAGTTAATA+AGG - chr5_2:64554614-64554633 Msa0781890:intron 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr5_2:64554623-64554642 Msa0781890:intron 15.0%
!! ACAAAAATAGAAAGAATTTA+CGG + chr5_2:64554751-64554770 None:intergenic 15.0%
!! TTATAAACCAATATAAAAGA+AGG + chr5_2:64555263-64555282 None:intergenic 15.0%
!! TATAAACTCAGAAATAATGA+TGG + chr5_2:64548312-64548331 None:intergenic 20.0%
!! TATCTCTTAATTTCTTTCAA+TGG - chr5_2:64548359-64548378 Msa0781890:three_prime_UTR 20.0%
!!! CTTAACATTTTCTATATTGT+AGG - chr5_2:64549426-64549445 Msa0781890:intron 20.0%
!! TTGTTAAAACTAAATCATCA+TGG - chr5_2:64549614-64549633 Msa0781890:three_prime_UTR 20.0%
!! TATAATTCTTCGTAATATCA+AGG + chr5_2:64549934-64549953 None:intergenic 20.0%
!! ATAGTTATATACTTCTGATA+TGG - chr5_2:64549951-64549970 Msa0781890:intron 20.0%
!! CAAGTAGAGTTTAAAAAAAA+AGG + chr5_2:64550034-64550053 None:intergenic 20.0%
!! AATATTATTCTTGAAGTAGT+CGG - chr5_2:64550116-64550135 Msa0781890:three_prime_UTR 20.0%
!! TAGCTCAATGTTTATTATTT+GGG + chr5_2:64550163-64550182 None:intergenic 20.0%
!! AGACAATAGTCATAATTAAA+TGG - chr5_2:64550330-64550349 Msa0781890:three_prime_UTR 20.0%
!! CAAACAATTATTGATGAAAT+TGG - chr5_2:64550420-64550439 Msa0781890:three_prime_UTR 20.0%
!! GACTAAAATTAACAAATCTT+AGG + chr5_2:64550501-64550520 None:intergenic 20.0%
!!! CCCATAAATTTCATTTTTTT+AGG + chr5_2:64550626-64550645 None:intergenic 20.0%
!! TGAAAATAAAATTGGCATTA+GGG + chr5_2:64550759-64550778 None:intergenic 20.0%
!! CTTTAACCTGAAAATAAAAT+TGG + chr5_2:64550767-64550786 None:intergenic 20.0%
!!! CAATTTTATTTTCAGGTTAA+AGG - chr5_2:64550765-64550784 Msa0781890:intron 20.0%
!! ATCACTAATTTGAATATTGT+TGG + chr5_2:64550913-64550932 None:intergenic 20.0%
!!! TTTACTTCTTACCAATATTT+TGG - chr5_2:64551810-64551829 Msa0781890:intron 20.0%
!! TTGAAAGGAAAACTAAATAA+AGG + chr5_2:64551985-64552004 None:intergenic 20.0%
!!! TTTTCCTTTCAATATTTTTG+TGG - chr5_2:64551993-64552012 Msa0781890:intron 20.0%
!!! ATTCGCTTTTGAAATTATTA+TGG - chr5_2:64552950-64552969 Msa0781890:intron 20.0%
!!! ATTCGCTTTTGAAATTATTA+TGG - chr5_2:64552950-64552969 Msa0781890:intron 20.0%
!! AATTGAAAAACATCAACTAA+AGG - chr5_2:64553231-64553250 Msa0781890:intron 20.0%
!! ATTGAAAAACATCAACTAAA+GGG - chr5_2:64553232-64553251 Msa0781890:intron 20.0%
!!! AAAATTAATTTTCTTGCTGA+TGG + chr5_2:64553701-64553720 None:intergenic 20.0%
!! AGATATGATTTACCATATAA+AGG + chr5_2:64554215-64554234 None:intergenic 20.0%
!!! CATTTTTCTCTCATTATTAT+CGG + chr5_2:64554368-64554387 None:intergenic 20.0%
!! ATTGAAAAGGTTAGATTTAT+GGG - chr5_2:64554886-64554905 Msa0781890:intron 20.0%
!!! ATATACACCTTCTTTTATAT+TGG - chr5_2:64555253-64555272 Msa0781890:CDS 20.0%
! CATGAAACTTCAAGAATTAA+TGG - chr5_2:64548503-64548522 Msa0781890:intron 25.0%
!!! TGAAAGAAATTATGTTTTGG+AGG - chr5_2:64548557-64548576 Msa0781890:intron 25.0%
!!! GAAAGAAATTATGTTTTGGA+GGG - chr5_2:64548558-64548577 Msa0781890:intron 25.0%
!!! TTTTTGATTACTCAATGTGT+TGG + chr5_2:64548748-64548767 None:intergenic 25.0%
!!! TTAGCCTTTGAATTTTAATG+TGG - chr5_2:64548807-64548826 Msa0781890:intron 25.0%
! CTGTTTGAATATCTTATGTA+AGG - chr5_2:64549059-64549078 Msa0781890:intron 25.0%
!! GTTAAGTGAATCTATCTTTT+TGG + chr5_2:64549393-64549412 None:intergenic 25.0%
! TTTCAAAGTTCTTAACTTCA+AGG - chr5_2:64549549-64549568 Msa0781890:intron 25.0%
! AAAGTATATGTAAACGTTGT+TGG + chr5_2:64549687-64549706 None:intergenic 25.0%
!!! TTTTGATATGAAGTGTCTTT+TGG + chr5_2:64549833-64549852 None:intergenic 25.0%
! CATATCAAAAATTTGAGCTA+AGG - chr5_2:64549843-64549862 Msa0781890:three_prime_UTR 25.0%
! ACCAACTATGTTTATAATCT+TGG - chr5_2:64549896-64549915 Msa0781890:three_prime_UTR 25.0%
! ACCAAGATTATAAACATAGT+TGG + chr5_2:64549900-64549919 None:intergenic 25.0%
! AGCTCAATGTTTATTATTTG+GGG + chr5_2:64550162-64550181 None:intergenic 25.0%
! GTAGCTCAATGTTTATTATT+TGG + chr5_2:64550164-64550183 None:intergenic 25.0%
!! TTTGCAATTAAACTTGTTTG+GGG + chr5_2:64550186-64550205 None:intergenic 25.0%
!! GTTTGCAATTAAACTTGTTT+GGG + chr5_2:64550187-64550206 None:intergenic 25.0%
!! TGTTTGCAATTAAACTTGTT+TGG + chr5_2:64550188-64550207 None:intergenic 25.0%
!!! TTGTATTGGTTTGATACTTT+CGG - chr5_2:64550259-64550278 Msa0781890:three_prime_UTR 25.0%
!! TTTTGCCCAACATTTTTAAA+TGG - chr5_2:64550457-64550476 Msa0781890:three_prime_UTR 25.0%
! AATCGCCATTTAAAAATGTT+GGG + chr5_2:64550465-64550484 None:intergenic 25.0%
! AAATCGCCATTTAAAAATGT+TGG + chr5_2:64550466-64550485 None:intergenic 25.0%
! CTGAAAATAAAATTGGCATT+AGG + chr5_2:64550760-64550779 None:intergenic 25.0%
!!! CTAATGCCAATTTTATTTTC+AGG - chr5_2:64550758-64550777 Msa0781890:intron 25.0%
!!! AAAAATATTTCTAGGTTCAC+TGG + chr5_2:64550880-64550899 None:intergenic 25.0%
! TTCTGCTGAAAAATATTTCT+AGG + chr5_2:64550888-64550907 None:intergenic 25.0%
!!! AGTAGTAAGGTTTTAAATCA+CGG - chr5_2:64551036-64551055 Msa0781890:intron 25.0%
!!! TGTAAACAACCTGTTATTTT+TGG + chr5_2:64551284-64551303 None:intergenic 25.0%
! ATAACAGGTTGTTTACATAT+TGG - chr5_2:64551287-64551306 Msa0781890:CDS 25.0%
!! ATTCTAAGAATTAAGCAACA+AGG - chr5_2:64551339-64551358 Msa0781890:intron 25.0%
!! TTCTAAGAATTAAGCAACAA+GGG - chr5_2:64551340-64551359 Msa0781890:intron 25.0%
! TTATAAACCTCAAATTCTTG+TGG - chr5_2:64551368-64551387 Msa0781890:intron 25.0%
! AATATACTCTTAACTTTGAC+AGG - chr5_2:64551454-64551473 Msa0781890:CDS 25.0%
! TAATTTCCAATAACAAGATC+TGG + chr5_2:64551888-64551907 None:intergenic 25.0%
! AAATTACACAGATGGAAATT+TGG - chr5_2:64551902-64551921 Msa0781890:intron 25.0%
! TTTCAATCACAATAAGGAAT+TGG + chr5_2:64552048-64552067 None:intergenic 25.0%
!! CCTAATTTTCAATCACAATA+AGG + chr5_2:64552054-64552073 None:intergenic 25.0%
! CCTTATTGTGATTGAAAATT+AGG - chr5_2:64552051-64552070 Msa0781890:intron 25.0%
!!! TGTACTGGTTATGATAAAAT+CGG + chr5_2:64552200-64552219 None:intergenic 25.0%
! TGTTATCTACTTTGTTAAAG+AGG + chr5_2:64552544-64552563 None:intergenic 25.0%
! TACTATCTTAGAATTTGAGT+TGG + chr5_2:64552716-64552735 None:intergenic 25.0%
!! AGCTGAAAGTTTTCAAATTT+CGG + chr5_2:64552893-64552912 None:intergenic 25.0%
! AAAAGCGAATATCAATCAAT+TGG + chr5_2:64552940-64552959 None:intergenic 25.0%
! TGAAATTATTATGGAAACAG+TGG - chr5_2:64552959-64552978 Msa0781890:intron 25.0%
! TGAAATTATTATGGAAACAG+TGG - chr5_2:64552959-64552978 Msa0781890:intron 25.0%
!!! CTCTATCTTTTGATTTTGAA+GGG + chr5_2:64553177-64553196 None:intergenic 25.0%
!!! TCTCTATCTTTTGATTTTGA+AGG + chr5_2:64553178-64553197 None:intergenic 25.0%
! TTCAAAATCAAAAGATAGAG+AGG - chr5_2:64553177-64553196 Msa0781890:intron 25.0%
!! ATTAAAGGGTCTTGTAAAAA+TGG + chr5_2:64553630-64553649 None:intergenic 25.0%
! AAAACTCACTATGCAATAAT+TGG + chr5_2:64553930-64553949 None:intergenic 25.0%
! GAATAATCTCAACCTTTATA+TGG - chr5_2:64554200-64554219 Msa0781890:CDS 25.0%
! CGAATGTATATAGTCTAATT+TGG + chr5_2:64554263-64554282 None:intergenic 25.0%
! AGAGACACATAAATCTTATA+AGG + chr5_2:64554299-64554318 None:intergenic 25.0%
! TTATAAGATTTATGTGTCTC+TGG - chr5_2:64554298-64554317 Msa0781890:intron 25.0%
! TGTTAGCATGAAAAATCAAA+TGG + chr5_2:64554810-64554829 None:intergenic 25.0%
!!! TTCTTTTTTCCTTTTCTTCT+TGG - chr5_2:64554835-64554854 Msa0781890:intron 25.0%
!! TAAATCTAACCTTTTCAATG+TGG + chr5_2:64554885-64554904 None:intergenic 25.0%
! CATTGAAAAGGTTAGATTTA+TGG - chr5_2:64554885-64554904 Msa0781890:intron 25.0%
!! AAGACATAATTTCCTTTTGT+GGG + chr5_2:64554950-64554969 None:intergenic 25.0%
!!! AAGCAAGTGTTTTTTTAGTA+AGG + chr5_2:64555136-64555155 None:intergenic 25.0%
TCAAGAATTAATGGAAGAAG+TGG - chr5_2:64548512-64548531 Msa0781890:intron 30.0%
TGCACCACATTAAAATTCAA+AGG + chr5_2:64548814-64548833 None:intergenic 30.0%
! TTGAATTTGAGGTAATCTGT+GGG + chr5_2:64548958-64548977 None:intergenic 30.0%
ATTACCTCAAATTCAAGGAA+AGG - chr5_2:64548962-64548981 Msa0781890:intron 30.0%
TTACCTCAAATTCAAGGAAA+GGG - chr5_2:64548963-64548982 Msa0781890:intron 30.0%
! GAGAAATGACATACCATTTT+TGG + chr5_2:64548996-64549015 None:intergenic 30.0%
! AAGCGGTCTTTTATAAACAT+CGG + chr5_2:64549200-64549219 None:intergenic 30.0%
!! AGTGAATCTATCTTTTTGGT+AGG + chr5_2:64549389-64549408 None:intergenic 30.0%
AATGTTAAGCATCAAAAGCA+AGG + chr5_2:64549415-64549434 None:intergenic 30.0%
!! ACTTTGGAGCATTTGATATT+GGG - chr5_2:64549477-64549496 Msa0781890:intron 30.0%
GAAGAAGACAAGGTTAATTT+AGG + chr5_2:64549506-64549525 None:intergenic 30.0%
TTAACCTTGTCTTCTTCAAT+TGG - chr5_2:64549509-64549528 Msa0781890:intron 30.0%
ATTTCCAATTGAAGAAGACA+AGG + chr5_2:64549516-64549535 None:intergenic 30.0%
TTGTCTTCTTCAATTGGAAA+TGG - chr5_2:64549515-64549534 Msa0781890:intron 30.0%
!!! CAAGGTTTTTTTTTAAGTCG+CGG + chr5_2:64549983-64550002 None:intergenic 30.0%
! TGTTTATTATTTGGGGTAGT+CGG + chr5_2:64550155-64550174 None:intergenic 30.0%
! TTAAATGGACAACGAGTTTT+TGG - chr5_2:64550345-64550364 Msa0781890:three_prime_UTR 30.0%
AGCTTGCAAAAAATTTATGC+AGG + chr5_2:64550720-64550739 None:intergenic 30.0%
!!! TTATTTTCAGGTTAAAGGAG+TGG - chr5_2:64550770-64550789 Msa0781890:intron 30.0%
!!! TATTTTCAGGTTAAAGGAGT+GGG - chr5_2:64550771-64550790 Msa0781890:intron 30.0%
! TTCTCAGTTCATGGTTATTT+TGG - chr5_2:64550934-64550953 Msa0781890:intron 30.0%
!! TCTCAGTTCATGGTTATTTT+GGG - chr5_2:64550935-64550954 Msa0781890:intron 30.0%
! CTTATGGTAGAAATTTTACC+TGG + chr5_2:64550996-64551015 None:intergenic 30.0%
CAGGTAAAATTTCTACCATA+AGG - chr5_2:64550994-64551013 Msa0781890:intron 30.0%
AAGAATTGCATCTACGATTT+GGG + chr5_2:64551171-64551190 None:intergenic 30.0%
AAAGAATTGCATCTACGATT+TGG + chr5_2:64551172-64551191 None:intergenic 30.0%
ATTCCTTTCTCTGTATGAAA+AGG + chr5_2:64551572-64551591 None:intergenic 30.0%
GAGTAAACTTCTCAAGATAA+GGG + chr5_2:64551628-64551647 None:intergenic 30.0%
TGAGTAAACTTCTCAAGATA+AGG + chr5_2:64551629-64551648 None:intergenic 30.0%
TTATCTTGAGAAGTTTACTC+AGG - chr5_2:64551628-64551647 Msa0781890:intron 30.0%
!! CAAAGCATAGTTCTAAACTA+TGG + chr5_2:64551768-64551787 None:intergenic 30.0%
AAAGTTCATAAGAGAGGAAA+AGG + chr5_2:64551793-64551812 None:intergenic 30.0%
AGAAGTAAAGTTCATAAGAG+AGG + chr5_2:64551799-64551818 None:intergenic 30.0%
! AACCAAAATTTTGGACCTAA+TGG - chr5_2:64551854-64551873 Msa0781890:intron 30.0%
! TTCCATTAGGTCCAAAATTT+TGG + chr5_2:64551859-64551878 None:intergenic 30.0%
! AAAATTTTGGACCTAATGGA+AGG - chr5_2:64551858-64551877 Msa0781890:intron 30.0%
! AAATTTTGGACCTAATGGAA+GGG - chr5_2:64551859-64551878 Msa0781890:intron 30.0%
GTTATTGGAAATTACACAGA+TGG - chr5_2:64551894-64551913 Msa0781890:intron 30.0%
! AAATTTGGTGGCATCATTAA+TGG - chr5_2:64551917-64551936 Msa0781890:intron 30.0%
TCATTAATGGCTAGAAAACT+TGG - chr5_2:64551930-64551949 Msa0781890:intron 30.0%
CATTAATGGCTAGAAAACTT+GGG - chr5_2:64551931-64551950 Msa0781890:intron 30.0%
AGGGAAATAGATACTTTGAT+CGG + chr5_2:64552468-64552487 None:intergenic 30.0%
!! TTTGGTCTTTTTCTGTGTAA+GGG + chr5_2:64552487-64552506 None:intergenic 30.0%
CAGAAAAGTTTAATGTGCAA+GGG + chr5_2:64552596-64552615 None:intergenic 30.0%
ACAGAAAAGTTTAATGTGCA+AGG + chr5_2:64552597-64552616 None:intergenic 30.0%
TCTGTTAAAAGACTCATTTG+AGG - chr5_2:64552612-64552631 Msa0781890:intron 30.0%
! AAAGTTTTCAAATTTCGGCT+TGG + chr5_2:64552888-64552907 None:intergenic 30.0%
ATGTTGTGAAGAACTTAAGT+GGG - chr5_2:64553077-64553096 Msa0781890:intron 30.0%
GAATAAGAGACTAAGAAACT+TGG - chr5_2:64553120-64553139 Msa0781890:intron 30.0%
ATCAAAAGATAGAGAGGAAA+TGG - chr5_2:64553183-64553202 Msa0781890:intron 30.0%
AAATCACGTTCCAATATGAT+GGG + chr5_2:64553540-64553559 None:intergenic 30.0%
CTTTATCTTGTAGCTATACT+TGG - chr5_2:64553735-64553754 Msa0781890:intron 30.0%
!! TGCAAACAAGTTGGTAAATA+TGG - chr5_2:64553766-64553785 Msa0781890:intron 30.0%
!! GCAAACAAGTTGGTAAATAT+GGG - chr5_2:64553767-64553786 Msa0781890:intron 30.0%
!! CAAACAAGTTGGTAAATATG+GGG - chr5_2:64553768-64553787 Msa0781890:intron 30.0%
!! TTTGTTAACTTGCTTCCAAA+AGG + chr5_2:64553804-64553823 None:intergenic 30.0%
AGTTAACAAAGAGCAAAATG+AGG - chr5_2:64553814-64553833 Msa0781890:CDS 30.0%
! GAATTTGGTTAGTCAATGTT+TGG - chr5_2:64553880-64553899 Msa0781890:CDS 30.0%
TGACTTGACATTCATACATA+TGG + chr5_2:64554406-64554425 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr5_2:64554706-64554725 Msa0781890:CDS 30.0%
! CAATTTTCTTAACTGCACAA+AGG + chr5_2:64554783-64554802 None:intergenic 30.0%
! CAAGACATAATTTCCTTTTG+TGG + chr5_2:64554951-64554970 None:intergenic 30.0%
! AAAAGTAGCAACTTTTGCAT+TGG + chr5_2:64555018-64555037 None:intergenic 30.0%
TGAATAAAATGATGTGTGTG+AGG - chr5_2:64555344-64555363 Msa0781890:five_prime_UTR 30.0%
TAAAGAATTTGTGCGCTTCA+AGG + chr5_2:64548397-64548416 None:intergenic 35.0%
! TAGCAAAGCACTTCTTCATA+TGG + chr5_2:64548458-64548477 None:intergenic 35.0%
TTTGCTAAGTACCTAGAGAA+AGG - chr5_2:64548471-64548490 Msa0781890:three_prime_UTR 35.0%
TTGCTAAGTACCTAGAGAAA+GGG - chr5_2:64548472-64548491 Msa0781890:three_prime_UTR 35.0%
!!! TATGTTTTGGAGGGAAATCT+TGG - chr5_2:64548567-64548586 Msa0781890:intron 35.0%
CTTTATATTGAGCTCTACAC+AGG - chr5_2:64548590-64548609 Msa0781890:intron 35.0%
CTAATTGCAAAGGCTACATA+TGG + chr5_2:64548868-64548887 None:intergenic 35.0%
CATATGTAGCCTTTGCAATT+AGG - chr5_2:64548866-64548885 Msa0781890:intron 35.0%
! TGAATTTGAGGTAATCTGTG+GGG + chr5_2:64548957-64548976 None:intergenic 35.0%
! CTTGAATTTGAGGTAATCTG+TGG + chr5_2:64548959-64548978 None:intergenic 35.0%
CACAGATTACCTCAAATTCA+AGG - chr5_2:64548957-64548976 Msa0781890:intron 35.0%
! AAAGGGTGTATGACCAAAAA+TGG - chr5_2:64548980-64548999 Msa0781890:intron 35.0%
CTAATTGTGACACAAAGAGT+TGG + chr5_2:64549131-64549150 None:intergenic 35.0%
TGTCACAATTAGCAGATAAC+TGG - chr5_2:64549139-64549158 Msa0781890:intron 35.0%
TTTATAAAAGACCGCTTGCT+AGG - chr5_2:64549203-64549222 Msa0781890:intron 35.0%
AGCTACTAACTAATCTTTCG+AGG + chr5_2:64549259-64549278 None:intergenic 35.0%
! AATGCATTTGAAGCAGACTT+TGG - chr5_2:64549461-64549480 Msa0781890:intron 35.0%
!! GACTTTGGAGCATTTGATAT+TGG - chr5_2:64549476-64549495 Msa0781890:intron 35.0%
TTCTTAACTTCAAGGACAAC+TGG - chr5_2:64549557-64549576 Msa0781890:intron 35.0%
TCTTAACTTCAAGGACAACT+GGG - chr5_2:64549558-64549577 Msa0781890:intron 35.0%
AATCATCATGGAGAAGTAAG+TGG - chr5_2:64549626-64549645 Msa0781890:three_prime_UTR 35.0%
!!! TTTTTTTTAAGTCGCGGTTG+AGG + chr5_2:64549977-64549996 None:intergenic 35.0%
!!! ATTTTCAGGTTAAAGGAGTG+GGG - chr5_2:64550772-64550791 Msa0781890:intron 35.0%
TTAGTGATCTTCTCAGTTCA+TGG - chr5_2:64550925-64550944 Msa0781890:intron 35.0%
TCACAGTTCAATAGAGATCA+TGG + chr5_2:64551070-64551089 None:intergenic 35.0%
TGAACTGTGATCCTTAACAT+TGG - chr5_2:64551080-64551099 Msa0781890:intron 35.0%
CTTCATTCTCTCCAATGTTA+AGG + chr5_2:64551094-64551113 None:intergenic 35.0%
! CACTTGTTGCCAAAAATAAC+AGG - chr5_2:64551272-64551291 Msa0781890:CDS 35.0%
TTACATATTGGACCAAGTCA+AGG - chr5_2:64551299-64551318 Msa0781890:CDS 35.0%
TCATAGTTGCATGTAGAAAG+AGG + chr5_2:64551416-64551435 None:intergenic 35.0%
CTTAACTTTGACAGGTAACA+AGG - chr5_2:64551462-64551481 Msa0781890:CDS 35.0%
GAGTGTTTGGTATCATTGAT+TGG + chr5_2:64551533-64551552 None:intergenic 35.0%
TTACACAGATGGAAATTTGG+TGG - chr5_2:64551905-64551924 Msa0781890:intron 35.0%
TAGAAAACTTGGGATAACTC+AGG - chr5_2:64551941-64551960 Msa0781890:intron 35.0%
GCAGCCACAAAAATATTGAA+AGG + chr5_2:64552000-64552019 None:intergenic 35.0%
ATGAAGACTCAGATGTTAAG+TGG - chr5_2:64552107-64552126 Msa0781890:CDS 35.0%
TGACGTGAGAAGTGATATTT+AGG + chr5_2:64552145-64552164 None:intergenic 35.0%
AGCAATTTCTTGGTATGTAC+TGG + chr5_2:64552215-64552234 None:intergenic 35.0%
AGTACATACCAAGAAATTGC+TGG - chr5_2:64552214-64552233 Msa0781890:intron 35.0%
!! CTTTGGTCTTTTTCTGTGTA+AGG + chr5_2:64552488-64552507 None:intergenic 35.0%
AAAAGTTTAATGTGCAAGGG+TGG + chr5_2:64552593-64552612 None:intergenic 35.0%
AAGACTCATTTGAGGAGATA+AGG - chr5_2:64552620-64552639 Msa0781890:intron 35.0%
CTAACTCAACTCTACAAAAC+CGG + chr5_2:64552864-64552883 None:intergenic 35.0%
GAAACCAATAATCTTCTCGA+TGG - chr5_2:64553045-64553064 Msa0781890:intron 35.0%
GATGTTGTGAAGAACTTAAG+TGG - chr5_2:64553076-64553095 Msa0781890:intron 35.0%
!! ACTTAAGTGGGTTAGTTGAA+TGG - chr5_2:64553089-64553108 Msa0781890:intron 35.0%
AACTAAAGGGACAATTCAGA+TGG - chr5_2:64553245-64553264 Msa0781890:intron 35.0%
CCTTGATTAGTAGCAAAAGT+TGG + chr5_2:64553406-64553425 None:intergenic 35.0%
! CCAACTTTTGCTACTAATCA+AGG - chr5_2:64553403-64553422 Msa0781890:intron 35.0%
! ACTTTTGCTACTAATCAAGG+AGG - chr5_2:64553406-64553425 Msa0781890:intron 35.0%
!! CCATCAACAATTATTTCTGC+TGG + chr5_2:64553433-64553452 None:intergenic 35.0%
CCAGCAGAAATAATTGTTGA+TGG - chr5_2:64553430-64553449 Msa0781890:intron 35.0%
!! ATAATTGTTGATGGTGTCTC+AGG - chr5_2:64553439-64553458 Msa0781890:intron 35.0%
GAAATCACGTTCCAATATGA+TGG + chr5_2:64553541-64553560 None:intergenic 35.0%
ATATTGGAACGTGATTTCTG+CGG - chr5_2:64553543-64553562 Msa0781890:intron 35.0%
GAAGATCTATGCAAACAAGT+TGG - chr5_2:64553757-64553776 Msa0781890:intron 35.0%
TTGTGATACGTTAATGTCAC+AGG - chr5_2:64553976-64553995 Msa0781890:intron 35.0%
! GTTTCGGTATAAAGTGTCAT+AGG - chr5_2:64554151-64554170 Msa0781890:CDS 35.0%
!!! GACACTCATTTTGAAATGGA+GGG + chr5_2:64554468-64554487 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+TGG + chr5_2:64554472-64554491 None:intergenic 35.0%
! TGTGCAGAGTATTAATTGGA+GGG + chr5_2:64554571-64554590 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG + chr5_2:64554575-64554594 None:intergenic 35.0%
GTTCACAATCCACATTGAAA+AGG - chr5_2:64554873-64554892 Msa0781890:intron 35.0%
TTCCTTAAACAATGCCCTTA+GGG + chr5_2:64554927-64554946 None:intergenic 35.0%
TTGTTTAAGGAACCCACAAA+AGG - chr5_2:64554935-64554954 Msa0781890:intron 35.0%
ATGCTTAAACAATGCCCTTA+GGG - chr5_2:64555040-64555059 Msa0781890:intron 35.0%
AAAAACACTTGCTTCCTTTC+AGG - chr5_2:64555142-64555161 Msa0781890:CDS 35.0%
!! CTTCCTTTCAGGTTATTACT+TGG - chr5_2:64555153-64555172 Msa0781890:CDS 35.0%
GGTTATTACTTGGAGCTTAA+TGG - chr5_2:64555163-64555182 Msa0781890:CDS 35.0%
TCATGCTGAATATTGATCCT+CGG - chr5_2:64555226-64555245 Msa0781890:CDS 35.0%
! TACTCAATGTGTTGGACTAG+TGG + chr5_2:64548740-64548759 None:intergenic 40.0%
ATTGCAAAGGCTACATATGG+TGG + chr5_2:64548865-64548884 None:intergenic 40.0%
! TGGATTAGGCCTAATTGCAA+AGG + chr5_2:64548878-64548897 None:intergenic 40.0%
TTTGCAATTAGGCCTAATCC+AGG - chr5_2:64548877-64548896 Msa0781890:intron 40.0%
! GAATTTGAGGTAATCTGTGG+GGG + chr5_2:64548956-64548975 None:intergenic 40.0%
ACACCCTTTCCTTGAATTTG+AGG + chr5_2:64548969-64548988 None:intergenic 40.0%
! TAACTGGTCTCTTAAGCATG+TGG - chr5_2:64549155-64549174 Msa0781890:intron 40.0%
CAAAGATCTATGCAAGGAGA+TGG + chr5_2:64549234-64549253 None:intergenic 40.0%
GAGGTACAAAGATCTATGCA+AGG + chr5_2:64549240-64549259 None:intergenic 40.0%
TGTTTGTACCATACCACATG+AGG - chr5_2:64549330-64549349 Msa0781890:intron 40.0%
TTCAAGGACAACTGGGAAAT+TGG - chr5_2:64549565-64549584 Msa0781890:intron 40.0%
GATAAATGACACGTTGAGCT+CGG - chr5_2:64549754-64549773 Msa0781890:intron 40.0%
!!! TGTCTTTTGGAATTGCTGAG+AGG + chr5_2:64549820-64549839 None:intergenic 40.0%
! TCTACTTGTTAGTTGTGACC+AGG - chr5_2:64550046-64550065 Msa0781890:intron 40.0%
! CTACTTGTTAGTTGTGACCA+GGG - chr5_2:64550047-64550066 Msa0781890:intron 40.0%
! TACTTGTTAGTTGTGACCAG+GGG - chr5_2:64550048-64550067 Msa0781890:intron 40.0%
!!! TTTTCAGGTTAAAGGAGTGG+GGG - chr5_2:64550773-64550792 Msa0781890:intron 40.0%
! ATTTCTAGGTTCACTGGATC+CGG + chr5_2:64550874-64550893 None:intergenic 40.0%
GGAGAGAATGAAGTGTAATG+CGG - chr5_2:64551101-64551120 Msa0781890:intron 40.0%
AGACTCACCACAAGAATTTG+AGG + chr5_2:64551378-64551397 None:intergenic 40.0%
AAATTCTTGTGGTGAGTCTC+AGG - chr5_2:64551379-64551398 Msa0781890:intron 40.0%
! CATTGATTGGTTCAAACTCC+TGG + chr5_2:64551520-64551539 None:intergenic 40.0%
!! ACGTAGAATGTGAGAGTGTT+TGG + chr5_2:64551546-64551565 None:intergenic 40.0%
! GTGCCTTTTCATACAGAGAA+AGG - chr5_2:64551566-64551585 Msa0781890:CDS 40.0%
AGGCATGTATACATGCTTCA+CGG - chr5_2:64551648-64551667 Msa0781890:intron 40.0%
! GGACGCAACAACCAAAATTT+TGG - chr5_2:64551845-64551864 Msa0781890:intron 40.0%
TCACTTCTCACGTCAATTCA+TGG - chr5_2:64552150-64552169 Msa0781890:CDS 40.0%
CATACCAAGAAATTGCTGGA+AGG - chr5_2:64552218-64552237 Msa0781890:intron 40.0%
CAAACCTTCCAGCAATTTCT+TGG + chr5_2:64552225-64552244 None:intergenic 40.0%
! TTTTGCAGCAAAGATAGACC+TGG - chr5_2:64552341-64552360 Msa0781890:CDS 40.0%
ATGCTGCATTTACTCTTCCA+GGG - chr5_2:64552378-64552397 Msa0781890:intron 40.0%
GGTGCAGCTATATTGAACTT+GGG + chr5_2:64552440-64552459 None:intergenic 40.0%
AGGTGCAGCTATATTGAACT+TGG + chr5_2:64552441-64552460 None:intergenic 40.0%
AAGTTCAATATAGCTGCACC+TGG - chr5_2:64552440-64552459 Msa0781890:intron 40.0%
!! GGTGAAATTGAGAGTGTCTT+TGG + chr5_2:64552505-64552524 None:intergenic 40.0%
AGAGGAGATCTTCAATAGCA+GGG + chr5_2:64552526-64552545 None:intergenic 40.0%
AAGAGGAGATCTTCAATAGC+AGG + chr5_2:64552527-64552546 None:intergenic 40.0%
TCATTTGAGGAGATAAGGTC+AGG - chr5_2:64552625-64552644 Msa0781890:intron 40.0%
TTACGACAAAAACTGGTACG+GGG + chr5_2:64552679-64552698 None:intergenic 40.0%
CTTACGACAAAAACTGGTAC+GGG + chr5_2:64552680-64552699 None:intergenic 40.0%
CCTTACGACAAAAACTGGTA+CGG + chr5_2:64552681-64552700 None:intergenic 40.0%
! CGTACCAGTTTTTGTCGTAA+GGG - chr5_2:64552679-64552698 Msa0781890:CDS 40.0%
TCAACCCTTACGACAAAAAC+TGG + chr5_2:64552686-64552705 None:intergenic 40.0%
TTTGTCGTAAGGGTTGAGTT+AGG - chr5_2:64552689-64552708 Msa0781890:CDS 40.0%
GAGTCTACTTAAGATCCACT+CGG - chr5_2:64552739-64552758 Msa0781890:CDS 40.0%
AGTCTACTTAAGATCCACTC+GGG - chr5_2:64552740-64552759 Msa0781890:CDS 40.0%
AGATGTCTAGTCTATGTGTG+AGG - chr5_2:64552781-64552800 Msa0781890:CDS 40.0%
GATGTCTAGTCTATGTGTGA+GGG - chr5_2:64552782-64552801 Msa0781890:CDS 40.0%
! CCACTTACAAACGCATTTTC+AGG + chr5_2:64552837-64552856 None:intergenic 40.0%
CCTGAAAATGCGTTTGTAAG+TGG - chr5_2:64552834-64552853 Msa0781890:intron 40.0%
GAAAATGCGTTTGTAAGTGG+CGG - chr5_2:64552837-64552856 Msa0781890:intron 40.0%
!! CGGTTTTGTAGAGTTGAGTT+AGG - chr5_2:64552862-64552881 Msa0781890:intron 40.0%
CTTGCCATCGAGAAGATTAT+TGG + chr5_2:64553052-64553071 None:intergenic 40.0%
CAATAATCTTCTCGATGGCA+AGG - chr5_2:64553050-64553069 Msa0781890:intron 40.0%
!! AGTGGGTTAGTTGAATGGTA+TGG - chr5_2:64553094-64553113 Msa0781890:intron 40.0%
TTGGTGAACCTTGTCATAGT+TGG - chr5_2:64553139-64553158 Msa0781890:intron 40.0%
CCAAATGCTTCATACAAAGC+AGG + chr5_2:64553349-64553368 None:intergenic 40.0%
! CCTGCTTTGTATGAAGCATT+TGG - chr5_2:64553346-64553365 Msa0781890:intron 40.0%
GTCATTGAAGCAATGAACTG+TGG - chr5_2:64553376-64553395 Msa0781890:intron 40.0%
TTCCACATTGATCCTCTCAA+TGG - chr5_2:64553463-64553482 Msa0781890:intron 40.0%
CTTGATTCATCTCCATTGAG+AGG + chr5_2:64553478-64553497 None:intergenic 40.0%
GCAAAGTAGACCCATCATAT+TGG - chr5_2:64553527-64553546 Msa0781890:intron 40.0%
TTCATTTATGCGCTGCAATC+CGG + chr5_2:64553569-64553588 None:intergenic 40.0%
GATTGCAGCGCATAAATGAA+TGG - chr5_2:64553569-64553588 Msa0781890:intron 40.0%
ACAAGGAAACATCTCAAGAG+GGG + chr5_2:64553607-64553626 None:intergenic 40.0%
GACAAGGAAACATCTCAAGA+GGG + chr5_2:64553608-64553627 None:intergenic 40.0%
! GGGTCTTGTAAAAATGGACA+AGG + chr5_2:64553624-64553643 None:intergenic 40.0%
! TGCTGATGGTGCACATAAAA+GGG + chr5_2:64553687-64553706 None:intergenic 40.0%
! TTGCTGATGGTGCACATAAA+AGG + chr5_2:64553688-64553707 None:intergenic 40.0%
CAACCAACTCTCAAACAACA+AGG - chr5_2:64554049-64554068 Msa0781890:CDS 40.0%
TCCATACACAGACTTGACAA+TGG - chr5_2:64554335-64554354 Msa0781890:intron 40.0%
!!! CGACACTCATTTTGAAATGG+AGG + chr5_2:64554469-64554488 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG + chr5_2:64554572-64554591 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr5_2:64554710-64554729 Msa0781890:CDS 40.0%
!! AACGGAGGGAGTATTTAAGT+TGG - chr5_2:64554724-64554743 Msa0781890:CDS 40.0%
TGCTGCAAACCAAGAAGAAA+AGG + chr5_2:64554847-64554866 None:intergenic 40.0%
GTTCCTTAAACAATGCCCTT+AGG + chr5_2:64554928-64554947 None:intergenic 40.0%
GATGCTTAAACAATGCCCTT+AGG - chr5_2:64555039-64555058 Msa0781890:intron 40.0%
AATGCTAACAAGTGCCCTAA+GGG + chr5_2:64555057-64555076 None:intergenic 40.0%
AAATGCTAACAAGTGCCCTA+AGG + chr5_2:64555058-64555077 None:intergenic 40.0%
GCTCCAAGTAATAACCTGAA+AGG + chr5_2:64555159-64555178 None:intergenic 40.0%
! AGAAGGTGTATATACATCCG+AGG + chr5_2:64555246-64555265 None:intergenic 40.0%
CTACTCTGCTTCAATGCATC+AGG + chr5_2:64548432-64548451 None:intergenic 45.0%
AGTACCTAGAGAAAGGGAGA+AGG - chr5_2:64548478-64548497 Msa0781890:three_prime_UTR 45.0%
TGATCCTTCTCCCTTTCTCT+AGG + chr5_2:64548485-64548504 None:intergenic 45.0%
!! AATGTGTTGGACTAGTGGTG+GGG + chr5_2:64548735-64548754 None:intergenic 45.0%
!! CAATGTGTTGGACTAGTGGT+GGG + chr5_2:64548736-64548755 None:intergenic 45.0%
!! TCAATGTGTTGGACTAGTGG+TGG + chr5_2:64548737-64548756 None:intergenic 45.0%
TGTGGTGCATATGAACTTGC+AGG - chr5_2:64548825-64548844 Msa0781890:intron 45.0%
GTATGTACGTGTCAACTCAG+AGG - chr5_2:64548909-64548928 Msa0781890:intron 45.0%
TCACTGATCCTCATGTGGTA+TGG + chr5_2:64549341-64549360 None:intergenic 45.0%
TACCACATGAGGATCAGTGA+TGG - chr5_2:64549341-64549360 Msa0781890:intron 45.0%
TACCATCACTGATCCTCATG+TGG + chr5_2:64549346-64549365 None:intergenic 45.0%
! GGCAAAAGCACAGACTATAG+TGG - chr5_2:64549586-64549605 Msa0781890:intron 45.0%
TCATGAGACTCTGCAAGTGT+AGG + chr5_2:64549736-64549755 None:intergenic 45.0%
CGATTTAGGTCGCAACATCA+AGG + chr5_2:64550001-64550020 None:intergenic 45.0%
!!! TTTTTTGCAAGCTTCACCGC+TGG - chr5_2:64550727-64550746 Msa0781890:intron 45.0%
AAAGGATGGGGAGATAATGC+AGG - chr5_2:64550802-64550821 Msa0781890:intron 45.0%
ATGGGGAGATAATGCAGGAA+GGG - chr5_2:64550807-64550826 Msa0781890:intron 45.0%
AGATAATGCAGGAAGGGTGA+AGG - chr5_2:64550813-64550832 Msa0781890:intron 45.0%
!! ATCAGAAGTACTCCAAGCTC+CGG - chr5_2:64550852-64550871 Msa0781890:intron 45.0%
TTTGGGCAAGCAGATGTTCT+TGG - chr5_2:64550952-64550971 Msa0781890:intron 45.0%
CATCAGAAAGCAAGATGTCG+CGG - chr5_2:64551145-64551164 Msa0781890:CDS 45.0%
ATTGGACCAAGTCAAGGCTT+TGG - chr5_2:64551305-64551324 Msa0781890:intron 45.0%
CTTCTTCCAAAGCCTTGACT+TGG + chr5_2:64551314-64551333 None:intergenic 45.0%
!! AGGTTGATACCTGATGCTAG+AGG - chr5_2:64551482-64551501 Msa0781890:CDS 45.0%
CACTTAGTTCCTCTAGCATC+AGG + chr5_2:64551494-64551513 None:intergenic 45.0%
! TGATTGGTTCAAACTCCTGG+TGG + chr5_2:64551517-64551536 None:intergenic 45.0%
AGAAAGGAATCTTGCGCCAA+TGG - chr5_2:64551582-64551601 Msa0781890:intron 45.0%
GAAAGGAATCTTGCGCCAAT+GGG - chr5_2:64551583-64551602 Msa0781890:intron 45.0%
! GGGAAGCCAGATCTTGTTAT+TGG - chr5_2:64551879-64551898 Msa0781890:intron 45.0%
CTGGAAGAGTAAATGCAGCA+TGG + chr5_2:64552379-64552398 None:intergenic 45.0%
CATGCTGCATTTACTCTTCC+AGG - chr5_2:64552377-64552396 Msa0781890:intron 45.0%
TTACTCTTCCAGGGCTATGT+AGG - chr5_2:64552387-64552406 Msa0781890:intron 45.0%
TACTCTTCCAGGGCTATGTA+GGG - chr5_2:64552388-64552407 Msa0781890:intron 45.0%
! GGCTATGTAGGGTTGTTTCA+GGG - chr5_2:64552399-64552418 Msa0781890:intron 45.0%
TAGATACTTTGATCGGCACC+AGG + chr5_2:64552461-64552480 None:intergenic 45.0%
! CCGTACCAGTTTTTGTCGTA+AGG - chr5_2:64552678-64552697 Msa0781890:CDS 45.0%
AGTCCCGCATTGAATCAGAT+AGG - chr5_2:64552811-64552830 Msa0781890:CDS 45.0%
AGGCCTATCTGATTCAATGC+GGG + chr5_2:64552817-64552836 None:intergenic 45.0%
CAGGCCTATCTGATTCAATG+CGG + chr5_2:64552818-64552837 None:intergenic 45.0%
GTGGATATCTAGCAGAGAAG+AGG - chr5_2:64553023-64553042 Msa0781890:intron 45.0%
GTGAACCTTGTCATAGTTGG+TGG - chr5_2:64553142-64553161 Msa0781890:intron 45.0%
AGAAGCCACCAACTATGACA+AGG + chr5_2:64553150-64553169 None:intergenic 45.0%
CAGACTGATCGATATCGCAA+CGG - chr5_2:64553277-64553296 Msa0781890:intron 45.0%
!! TCGATGCATTGCTGACTCAA+AGG - chr5_2:64553309-64553328 Msa0781890:intron 45.0%
!! CGATGCATTGCTGACTCAAA+GGG - chr5_2:64553310-64553329 Msa0781890:intron 45.0%
CTCCATTGAGAGGATCAATG+TGG + chr5_2:64553468-64553487 None:intergenic 45.0%
AACATCTCAAGAGGGGACAT+AGG + chr5_2:64553600-64553619 None:intergenic 45.0%
GGACAAGGAAACATCTCAAG+AGG + chr5_2:64553609-64553628 None:intergenic 45.0%
! TGGGGAACACTTACACCTTT+TGG - chr5_2:64553786-64553805 Msa0781890:intron 45.0%
GGAGGTTCATCACTTGGAAT+AGG + chr5_2:64554013-64554032 None:intergenic 45.0%
!!! GGTTTTGGAGGTTCATCACT+TGG + chr5_2:64554019-64554038 None:intergenic 45.0%
GATGAACCTCCAAAACCAGT+TGG - chr5_2:64554022-64554041 Msa0781890:intron 45.0%
!! GAGCCTTGTTGTTTGAGAGT+TGG + chr5_2:64554055-64554074 None:intergenic 45.0%
CTCTCAAACAACAAGGCTCT+AGG - chr5_2:64554056-64554075 Msa0781890:CDS 45.0%
GCCATTGTCAAGTCTGTGTA+TGG + chr5_2:64554339-64554358 None:intergenic 45.0%
AGTCAGTGTCAAACACTGAC+AGG - chr5_2:64554421-64554440 Msa0781890:intron 45.0%
TGTCAAACACTGACAGGTGT+TGG - chr5_2:64554427-64554446 Msa0781890:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr5_2:64554709-64554728 Msa0781890:CDS 45.0%
! CAATGTGGATTGTGAACGTC+TGG + chr5_2:64554870-64554889 None:intergenic 45.0%
TCTTGCTAACAAGTGCCCTA+AGG - chr5_2:64554909-64554928 Msa0781890:intron 45.0%
CTTGCTAACAAGTGCCCTAA+GGG - chr5_2:64554910-64554929 Msa0781890:intron 45.0%
!! TGCCCTAAGGGCATTGTTTA+AGG - chr5_2:64554922-64554941 Msa0781890:intron 45.0%
GTGCGCTTCAAGGTATGTGT+TGG + chr5_2:64548387-64548406 None:intergenic 50.0%
TTAGGCCTAATCCAGGAGTC+TGG - chr5_2:64548884-64548903 Msa0781890:intron 50.0%
TAGGCCTAATCCAGGAGTCT+GGG - chr5_2:64548885-64548904 Msa0781890:intron 50.0%
TACTCCCAGACTCCTGGATT+AGG + chr5_2:64548892-64548911 None:intergenic 50.0%
! AAAAGACCGCTTGCTAGGAG+AGG - chr5_2:64549208-64549227 Msa0781890:intron 50.0%
GACTACCCCTCCCATATGAA+GGG + chr5_2:64550079-64550098 None:intergenic 50.0%
AGACTACCCCTCCCATATGA+AGG + chr5_2:64550080-64550099 None:intergenic 50.0%
TCATATGGGAGGGGTAGTCT+TGG - chr5_2:64550080-64550099 Msa0781890:three_prime_UTR 50.0%
AAGGAGTGGGGGTTTGAGAA+AGG - chr5_2:64550784-64550803 Msa0781890:intron 50.0%
AGTGGGGGTTTGAGAAAGGA+TGG - chr5_2:64550788-64550807 Msa0781890:intron 50.0%
GTGGGGGTTTGAGAAAGGAT+GGG - chr5_2:64550789-64550808 Msa0781890:intron 50.0%
TGGGGGTTTGAGAAAGGATG+GGG - chr5_2:64550790-64550809 Msa0781890:intron 50.0%
GATGGGGAGATAATGCAGGA+AGG - chr5_2:64550806-64550825 Msa0781890:intron 50.0%
TGTCTCTGCGACTGCAACTA+AGG + chr5_2:64551127-64551146 None:intergenic 50.0%
TAGAGGAACTAAGTGCCACC+AGG - chr5_2:64551499-64551518 Msa0781890:CDS 50.0%
TGTCGAAGCGAGAAACCCAT+TGG + chr5_2:64551601-64551620 None:intergenic 50.0%
! GATCTGGCTTCCCTTCCATT+AGG + chr5_2:64551872-64551891 None:intergenic 50.0%
GCATGGCTTTCATACTGTCC+AGG + chr5_2:64552362-64552381 None:intergenic 50.0%
GAAACAACCCTACATAGCCC+TGG + chr5_2:64552398-64552417 None:intergenic 50.0%
! GGGCTATGTAGGGTTGTTTC+AGG - chr5_2:64552398-64552417 Msa0781890:intron 50.0%
!!! TGCTTGCCAACTGGTTTTGG+AGG + chr5_2:64554031-64554050 None:intergenic 50.0%
!! GGTTGCTTGCCAACTGGTTT+TGG + chr5_2:64554034-64554053 None:intergenic 50.0%
! AGAGTTGGTTGCTTGCCAAC+TGG + chr5_2:64554040-64554059 None:intergenic 50.0%
! GACTAGTGGTGGGGATCAAG+GGG + chr5_2:64548726-64548745 None:intergenic 55.0%
! GGACTAGTGGTGGGGATCAA+GGG + chr5_2:64548727-64548746 None:intergenic 55.0%
!! TGGACTAGTGGTGGGGATCA+AGG + chr5_2:64548728-64548747 None:intergenic 55.0%
CGTACATACTCCCAGACTCC+TGG + chr5_2:64548898-64548917 None:intergenic 55.0%
CTCAGAGGACCTCTCTGTTG+AGG - chr5_2:64548924-64548943 Msa0781890:intron 55.0%
GGGTGATAGCCTCAACAGAG+AGG + chr5_2:64548936-64548955 None:intergenic 55.0%
AGATGGCCTCTCCTAGCAAG+CGG + chr5_2:64549217-64549236 None:intergenic 55.0%
CTCGGCTGCAAAGCTTCAGA+TGG - chr5_2:64549772-64549791 Msa0781890:intron 55.0%
AAGGCCTGCGAGCACGATTT+AGG + chr5_2:64550015-64550034 None:intergenic 55.0%
! AGGGGCGTAGCCCTTCATAT+GGG - chr5_2:64550066-64550085 Msa0781890:intron 55.0%
GCGTAGCCCTTCATATGGGA+GGG - chr5_2:64550070-64550089 Msa0781890:intron 55.0%
CGTAGCCCTTCATATGGGAG+GGG - chr5_2:64550071-64550090 Msa0781890:intron 55.0%
GGCATTAGGGTCACAACCAG+CGG + chr5_2:64550746-64550765 None:intergenic 55.0%
!! GTTCTTGGCTTGCCAGACAC+TGG - chr5_2:64550967-64550986 Msa0781890:intron 55.0%
TTTACCTGGCCACCAGTGTC+TGG + chr5_2:64550982-64551001 None:intergenic 55.0%
TAAGATCCACTCGGGCCACT+CGG - chr5_2:64552748-64552767 Msa0781890:CDS 55.0%
CATCTGTAGCATGACCCGAG+TGG + chr5_2:64552766-64552785 None:intergenic 55.0%
!! TGCGTTTGTAAGTGGCGGAC+CGG - chr5_2:64552842-64552861 Msa0781890:intron 55.0%
TGGAACGTGATTTCTGCGGC+CGG - chr5_2:64553547-64553566 Msa0781890:intron 55.0%
GCGACCTAAATCGTGCTCGC+AGG - chr5_2:64550008-64550027 Msa0781890:intron 60.0%
CATATGAAGGGCTACGCCCC+TGG + chr5_2:64550067-64550086 None:intergenic 60.0%
! CAGGGGCGTAGCCCTTCATA+TGG - chr5_2:64550065-64550084 Msa0781890:intron 60.0%
GGCGTAGCCCTTCATATGGG+AGG - chr5_2:64550069-64550088 Msa0781890:intron 60.0%
GGTTCACTGGATCCGGAGCT+TGG + chr5_2:64550867-64550886 None:intergenic 60.0%
!! CTTGGCTTGCCAGACACTGG+TGG - chr5_2:64550970-64550989 Msa0781890:intron 60.0%
AAGATCCACTCGGGCCACTC+GGG - chr5_2:64552749-64552768 Msa0781890:CDS 60.0%
CTTGCCAGACACTGGTGGCC+AGG - chr5_2:64550975-64550994 Msa0781890:intron 65.0%
CATGACCCGAGTGGCCCGAG+TGG + chr5_2:64552757-64552776 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 64548299 64555369 64548299 ID=Msa0781890;Name=Msa0781890
chr5_2 mRNA 64548299 64555369 64548299 ID=Msa0781890-mRNA-1;Parent=Msa0781890;Name=Msa0781890-mRNA-1;_AED=0.10;_eAED=0.10;_QI=79|0.71|0.73|1|0.71|0.66|15|968|540
chr5_2 exon 64548299 64548504 64548299 ID=Msa0781890-mRNA-1:exon:19354;Parent=Msa0781890-mRNA-1
chr5_2 exon 64548774 64548803 64548774 ID=Msa0781890-mRNA-1:exon:19353;Parent=Msa0781890-mRNA-1
chr5_2 exon 64549591 64549670 64549591 ID=Msa0781890-mRNA-1:exon:19352;Parent=Msa0781890-mRNA-1
chr5_2 exon 64549782 64549920 64549782 ID=Msa0781890-mRNA-1:exon:19351;Parent=Msa0781890-mRNA-1
chr5_2 exon 64550078 64550644 64550078 ID=Msa0781890-mRNA-1:exon:19350;Parent=Msa0781890-mRNA-1
chr5_2 exon 64551115 64551319 64551115 ID=Msa0781890-mRNA-1:exon:19349;Parent=Msa0781890-mRNA-1
chr5_2 exon 64551429 64551595 64551429 ID=Msa0781890-mRNA-1:exon:19348;Parent=Msa0781890-mRNA-1
chr5_2 exon 64551706 64551822 64551706 ID=Msa0781890-mRNA-1:exon:19347;Parent=Msa0781890-mRNA-1
chr5_2 exon 64552064 64552192 64552064 ID=Msa0781890-mRNA-1:exon:19346;Parent=Msa0781890-mRNA-1
chr5_2 exon 64552279 64552374 64552279 ID=Msa0781890-mRNA-1:exon:19345;Parent=Msa0781890-mRNA-1
chr5_2 exon 64552672 64552840 64552672 ID=Msa0781890-mRNA-1:exon:19344;Parent=Msa0781890-mRNA-1
chr5_2 exon 64553804 64553922 64553804 ID=Msa0781890-mRNA-1:exon:19343;Parent=Msa0781890-mRNA-1
chr5_2 exon 64554028 64554220 64554028 ID=Msa0781890-mRNA-1:exon:19342;Parent=Msa0781890-mRNA-1
chr5_2 exon 64554682 64554821 64554682 ID=Msa0781890-mRNA-1:exon:19341;Parent=Msa0781890-mRNA-1
chr5_2 exon 64555057 64555369 64555057 ID=Msa0781890-mRNA-1:exon:19340;Parent=Msa0781890-mRNA-1
chr5_2 five_prime_UTR 64555291 64555369 64555291 ID=Msa0781890-mRNA-1:five_prime_utr;Parent=Msa0781890-mRNA-1
chr5_2 CDS 64555057 64555290 64555057 ID=Msa0781890-mRNA-1:cds;Parent=Msa0781890-mRNA-1
chr5_2 CDS 64554682 64554821 64554682 ID=Msa0781890-mRNA-1:cds;Parent=Msa0781890-mRNA-1
chr5_2 CDS 64554028 64554220 64554028 ID=Msa0781890-mRNA-1:cds;Parent=Msa0781890-mRNA-1
chr5_2 CDS 64553804 64553922 64553804 ID=Msa0781890-mRNA-1:cds;Parent=Msa0781890-mRNA-1
chr5_2 CDS 64552672 64552840 64552672 ID=Msa0781890-mRNA-1:cds;Parent=Msa0781890-mRNA-1
chr5_2 CDS 64552279 64552374 64552279 ID=Msa0781890-mRNA-1:cds;Parent=Msa0781890-mRNA-1
chr5_2 CDS 64552064 64552192 64552064 ID=Msa0781890-mRNA-1:cds;Parent=Msa0781890-mRNA-1
chr5_2 CDS 64551706 64551822 64551706 ID=Msa0781890-mRNA-1:cds;Parent=Msa0781890-mRNA-1
chr5_2 CDS 64551429 64551595 64551429 ID=Msa0781890-mRNA-1:cds;Parent=Msa0781890-mRNA-1
chr5_2 CDS 64551115 64551319 64551115 ID=Msa0781890-mRNA-1:cds;Parent=Msa0781890-mRNA-1
chr5_2 CDS 64550591 64550644 64550591 ID=Msa0781890-mRNA-1:cds;Parent=Msa0781890-mRNA-1
chr5_2 three_prime_UTR 64550078 64550590 64550078 ID=Msa0781890-mRNA-1:three_prime_utr;Parent=Msa0781890-mRNA-1
chr5_2 three_prime_UTR 64549782 64549920 64549782 ID=Msa0781890-mRNA-1:three_prime_utr;Parent=Msa0781890-mRNA-1
chr5_2 three_prime_UTR 64549591 64549670 64549591 ID=Msa0781890-mRNA-1:three_prime_utr;Parent=Msa0781890-mRNA-1
chr5_2 three_prime_UTR 64548774 64548803 64548774 ID=Msa0781890-mRNA-1:three_prime_utr;Parent=Msa0781890-mRNA-1
chr5_2 three_prime_UTR 64548299 64548504 64548299 ID=Msa0781890-mRNA-1:three_prime_utr;Parent=Msa0781890-mRNA-1
Gene Sequence

>Msa0781890

ATGGCTCCAACACATACCTTGAAGCGCACAAATTCTTTAGCTGATAACATGCCTGATGCATTGAAGCAGAGTAGATACCATATGAAGAAGTGCTTTGCTAAGTACCTAGAGAAAGGGAGAAGGATCATGAAACTTCAAGAATTAATGGAAGAAGTGGAACGAACTATAGATGATAAAAATGAAAGAAATTATGTTTTGGAGGGAAATCTTGGCTTTATATTGAGCTCTACACAGGAAGCTGTTGTTGATCCACCATATGTAGCCTTTGCAATTAGGCCTAATCCAGGAGTCTGGGAGTATGTACGTGTCAACTCAGAGGACCTCTCTGTTGAGGCTATCACCCCCACAGATTACCTCAAATTCAAGGAAAGGGTGGCAAATGATGAAAATGCATTTGAAGCAGACTTTGGAGCATTTGATATTGGGATTCCTAAATTAACCTTGTCTTCTTCAATTGGAAATGGACTACACTTTGTTTCAAAGTTCTTAACTTCAAGGACAACTGGGAAATTGGCAAAAGCACAGACTATAGTGGACTACTTGTTAAAACTAAATCATCATGGAGAAAGTCTCATGATAAATGACACGTTGAGCTCGGCTGCAAAGCTTCAGATGGCATTAATAGTTGCTGATGTTTTCCTCTCAGCAATTCCAAAAGACACTTCATATCAAAAATTTGAGCTAAGGGTGAAGGAGACGATGAGAACTTTATCAGAAGTACTCCAAGCTCCGGATCCAGTGAACCTAGAAATATTTTTCAGCAGAATTCCAACAATATTCAAATTAGTGATCTTCTCAGTTCATGGTTATTTTGGGCAAGCAGATGTTCTTGGCTTGCCAGACACTGGTGGCCAGGTTGTTTACATATTGGACCAAGTCAAGGCTTTGGAAGAAGAGTTAATTCTAAGAATTAAGCAACAAGGGTTAAATTATAAACCTCAAATTCTTGTGGTAACAAGGTTGATACCTGATGCTAGAGGAACTAAGTGCCACCAGGAGTTTGAACCAATCAATGATACCAAACACTCTCACATTCTACGTGTGCCTTTTCATACAGAGAAAGGAATCTTGCGCCAATGGGACGCAACAACCAAAATTTTGGACCTAATGGAAGGGAAGCCAGATCTTGTTATTGGAAATTACACAGATGGAAATTTGGTGGCATCATTAATGGCTAGAAAACTTGGGATAACTCAGGCAACTATAGCACATGCTTTAGAGAAAACAAAGTATGAAGACTCAGATGTTAAGTGGAAAGAGTTAGATCCTAAATATCACTTCTCACGTCAATTCATGGCTGATACAGTTGCAATGAATTCATCCGATTTTATCATAACCAGTACATACCAAGAAATTGCTGGAAGCAAAGATAGACCTGGACAGTATGAAAGCCATGCTGCATTTACTCTTCCAGGGCTATGTAGGGTTGTTTCAGGGATAAATGTGTTTGATCCCAAGTTCAATATAGCTGCACCTGGTGCCGATCAAAGTATCTATTTCCCTTACACAGAAAAAGACCAAAGACACTCTCAATTTCACCCTGCTATTGAAGATCTCCTCTTTAACAAATGGATATCTAGCAGAGAAGAGGAAACCAATAATCTTCTCGATGGCAAGGCTTGA

Protein sequence

>Msa0781890

MAPTHTLKRTNSLADNMPDALKQSRYHMKKCFAKYLEKGRRIMKLQELMEEVERTIDDKNERNYVLEGNLGFILSSTQEAVVDPPYVAFAIRPNPGVWEYVRVNSEDLSVEAITPTDYLKFKERVANDENAFEADFGAFDIGIPKLTLSSSIGNGLHFVSKFLTSRTTGKLAKAQTIVDYLLKLNHHGESLMINDTLSSAAKLQMALIVADVFLSAIPKDTSYQKFELRVKETMRTLSEVLQAPDPVNLEIFFSRIPTIFKLVIFSVHGYFGQADVLGLPDTGGQVVYILDQVKALEEELILRIKQQGLNYKPQILVVTRLIPDARGTKCHQEFEPINDTKHSHILRVPFHTEKGILRQWDATTKILDLMEGKPDLVIGNYTDGNLVASLMARKLGITQATIAHALEKTKYEDSDVKWKELDPKYHFSRQFMADTVAMNSSDFIITSTYQEIAGSKDRPGQYESHAAFTLPGLCRVVSGINVFDPKFNIAAPGADQSIYFPYTEKDQRHSQFHPAIEDLLFNKWISSREEETNNLLDGKA*