Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060340 | GAU11198.1 | 79.699 | 266 | 54 | 0 | 9 | 274 | 18 | 283 | 7.32e-157 | 449 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060340 | sp|Q9FPT1|UBP12_ARATH | 32.026 | 153 | 95 | 4 | 18 | 169 | 42 | 186 | 5.24e-16 | 81.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060340 | A0A2K3N5Y4 | 81.712 | 257 | 46 | 1 | 9 | 264 | 2 | 258 | 2.07e-153 | 440 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0069350 | Msa1060340 | 0.814068 | 1.859292e-51 | -8.615850e-47 |
| Msa0104570 | Msa1060340 | 0.815948 | 7.116857e-52 | -8.615850e-47 |
| Msa0741970 | Msa1060340 | 0.849075 | 4.079955e-60 | -8.615850e-47 |
| Msa0781890 | Msa1060340 | 0.824925 | 6.196675e-54 | -8.615850e-47 |
| Msa0786230 | Msa1060340 | 0.811329 | 7.392628e-51 | -8.615850e-47 |
| Msa0823170 | Msa1060340 | 0.822935 | 1.814857e-53 | -8.615850e-47 |
| Msa0150590 | Msa1060340 | 0.833412 | 5.412850e-56 | -8.615850e-47 |
| Msa0427820 | Msa1060340 | 0.873364 | 1.556820e-67 | -8.615850e-47 |
| Msa0474060 | Msa1060340 | 0.872161 | 3.932797e-67 | -8.615850e-47 |
| Msa1060340 | Msa1149000 | 0.803888 | 2.811053e-49 | -8.615850e-47 |
| Msa1060340 | Msa1191550 | 0.809253 | 2.072858e-50 | -8.615850e-47 |
| Msa1060340 | Msa1227760 | 0.818031 | 2.423812e-52 | -8.615850e-47 |
| Msa1060340 | Msa1360930 | 0.816366 | 5.739271e-52 | -8.615850e-47 |
| Msa1060340 | Msa1369410 | 0.807520 | 4.856825e-50 | -8.615850e-47 |
| Msa1060340 | Msa1465040 | 0.824892 | 6.308459e-54 | -8.615850e-47 |
| Msa0325720 | Msa1060340 | 0.805343 | 1.397226e-49 | -8.615850e-47 |
| Msa0518680 | Msa1060340 | 0.867911 | 9.654367e-66 | -8.615850e-47 |
| Msa0862170 | Msa1060340 | 0.838163 | 3.384928e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060340 | MtrunA17_Chr4g0069161 | 40.541 | 259 | 148 | 3 | 26 | 278 | 14 | 272 | 1.62e-56 | 184 |
| Msa1060340 | MtrunA17_Chr8g0334821 | 35.667 | 300 | 164 | 8 | 9 | 279 | 5 | 304 | 1.05e-51 | 176 |
| Msa1060340 | MtrunA17_Chr1g0166871 | 29.078 | 141 | 94 | 3 | 30 | 170 | 12 | 146 | 2.17e-20 | 89.4 |
| Msa1060340 | MtrunA17_Chr5g0439971 | 29.586 | 169 | 103 | 4 | 1 | 169 | 39 | 191 | 2.28e-19 | 88.6 |
| Msa1060340 | MtrunA17_Chr5g0443161 | 32.836 | 134 | 83 | 3 | 29 | 162 | 31 | 157 | 1.02e-18 | 83.6 |
| Msa1060340 | MtrunA17_Chr1g0170261 | 30.061 | 163 | 99 | 4 | 4 | 166 | 38 | 185 | 6.58e-18 | 84.0 |
| Msa1060340 | MtrunA17_Chr3g0119031 | 29.586 | 169 | 105 | 5 | 1 | 169 | 32 | 186 | 1.56e-17 | 82.8 |
| Msa1060340 | MtrunA17_Chr5g0443194 | 35.878 | 131 | 76 | 4 | 32 | 162 | 20 | 142 | 1.73e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060340 | AT3G17380.1 | 45.525 | 257 | 135 | 4 | 27 | 279 | 17 | 272 | 4.73e-71 | 222 |
| Msa1060340 | AT3G20370.1 | 37.066 | 259 | 154 | 7 | 18 | 270 | 73 | 328 | 9.17e-45 | 156 |
| Msa1060340 | AT3G20370.2 | 37.066 | 259 | 154 | 7 | 18 | 270 | 51 | 306 | 9.18e-45 | 155 |
| Msa1060340 | AT1G58270.1 | 34.127 | 252 | 151 | 5 | 25 | 268 | 90 | 334 | 3.64e-38 | 139 |
| Msa1060340 | AT3G22080.1 | 32.000 | 275 | 179 | 6 | 13 | 279 | 2 | 276 | 6.45e-38 | 136 |
| Msa1060340 | AT3G28220.1 | 35.341 | 249 | 153 | 7 | 25 | 268 | 76 | 321 | 1.51e-37 | 137 |
| Msa1060340 | AT2G15710.1 | 35.443 | 237 | 146 | 5 | 25 | 257 | 94 | 327 | 1.13e-35 | 132 |
| Msa1060340 | AT5G26280.1 | 32.806 | 253 | 167 | 3 | 25 | 275 | 55 | 306 | 1.00e-34 | 129 |
| Msa1060340 | AT5G26280.3 | 32.806 | 253 | 167 | 3 | 25 | 275 | 74 | 325 | 1.53e-34 | 129 |
| Msa1060340 | AT5G26260.1 | 31.538 | 260 | 175 | 3 | 17 | 274 | 48 | 306 | 2.77e-34 | 127 |
| Msa1060340 | AT5G26320.1 | 32.099 | 243 | 160 | 4 | 25 | 263 | 55 | 296 | 1.00e-33 | 126 |
| Msa1060340 | AT3G20360.1 | 30.662 | 287 | 184 | 8 | 3 | 279 | 43 | 324 | 1.09e-33 | 126 |
| Msa1060340 | AT5G26290.1 | 33.202 | 253 | 160 | 4 | 25 | 275 | 48 | 293 | 1.52e-33 | 125 |
| Msa1060340 | AT2G04170.5 | 34.413 | 247 | 155 | 5 | 25 | 267 | 125 | 368 | 8.04e-32 | 121 |
| Msa1060340 | AT2G04170.4 | 34.156 | 243 | 153 | 5 | 25 | 263 | 3 | 242 | 5.05e-31 | 118 |
| Msa1060340 | AT2G04170.3 | 34.156 | 243 | 153 | 5 | 25 | 263 | 3 | 242 | 5.05e-31 | 118 |
| Msa1060340 | AT2G04170.6 | 33.600 | 250 | 159 | 5 | 25 | 270 | 85 | 331 | 2.35e-30 | 118 |
| Msa1060340 | AT5G26300.1 | 31.225 | 253 | 170 | 4 | 25 | 275 | 55 | 305 | 3.96e-30 | 116 |
| Msa1060340 | AT4G09770.3 | 30.612 | 245 | 159 | 7 | 25 | 265 | 5 | 242 | 4.34e-30 | 114 |
| Msa1060340 | AT2G04170.2 | 33.600 | 250 | 159 | 5 | 25 | 270 | 125 | 371 | 4.63e-30 | 117 |
| Msa1060340 | AT2G04170.1 | 33.600 | 250 | 159 | 5 | 25 | 270 | 125 | 371 | 4.63e-30 | 117 |
| Msa1060340 | AT3G20380.1 | 30.522 | 249 | 165 | 3 | 26 | 270 | 83 | 327 | 5.10e-30 | 117 |
| Msa1060340 | AT4G09770.5 | 30.612 | 245 | 159 | 7 | 25 | 265 | 31 | 268 | 8.10e-30 | 114 |
| Msa1060340 | AT4G09770.2 | 30.400 | 250 | 163 | 7 | 25 | 270 | 5 | 247 | 8.30e-30 | 114 |
| Msa1060340 | AT4G09770.1 | 30.400 | 250 | 163 | 7 | 25 | 270 | 5 | 247 | 8.30e-30 | 114 |
| Msa1060340 | AT4G09770.4 | 30.400 | 250 | 163 | 7 | 25 | 270 | 31 | 273 | 1.45e-29 | 114 |
| Msa1060340 | AT3G22085.1 | 29.520 | 271 | 160 | 9 | 16 | 279 | 5 | 251 | 2.76e-29 | 113 |
| Msa1060340 | AT2G04190.1 | 31.076 | 251 | 165 | 5 | 25 | 270 | 115 | 362 | 3.94e-27 | 109 |
| Msa1060340 | AT1G65150.2 | 30.417 | 240 | 152 | 5 | 25 | 262 | 15 | 241 | 1.00e-26 | 106 |
| Msa1060340 | AT1G65150.1 | 30.417 | 240 | 152 | 5 | 25 | 262 | 15 | 241 | 1.00e-26 | 106 |
| Msa1060340 | AT4G09780.2 | 31.193 | 218 | 145 | 4 | 4 | 219 | 37 | 251 | 7.18e-26 | 106 |
| Msa1060340 | AT4G09780.1 | 31.193 | 218 | 145 | 4 | 4 | 219 | 37 | 251 | 7.39e-26 | 106 |
| Msa1060340 | AT2G04170.7 | 35.385 | 195 | 120 | 4 | 25 | 216 | 125 | 316 | 2.56e-25 | 103 |
| Msa1060340 | AT4G01390.1 | 31.250 | 240 | 147 | 7 | 32 | 264 | 22 | 250 | 2.82e-25 | 102 |
| Msa1060340 | AT4G00780.1 | 30.769 | 247 | 150 | 9 | 32 | 270 | 22 | 255 | 5.13e-25 | 102 |
| Msa1060340 | AT5G26280.2 | 29.644 | 253 | 152 | 4 | 25 | 275 | 55 | 283 | 5.21e-24 | 99.8 |
| Msa1060340 | AT1G69660.1 | 30.769 | 195 | 132 | 3 | 97 | 288 | 8 | 202 | 8.96e-24 | 97.1 |
| Msa1060340 | AT1G65050.2 | 34.375 | 128 | 76 | 2 | 25 | 152 | 15 | 134 | 6.99e-20 | 84.7 |
| Msa1060340 | AT1G65050.1 | 34.375 | 128 | 76 | 2 | 25 | 152 | 15 | 134 | 6.99e-20 | 84.7 |
| Msa1060340 | AT1G69650.1 | 27.660 | 282 | 156 | 11 | 14 | 279 | 7 | 256 | 1.68e-19 | 87.0 |
| Msa1060340 | AT3G46190.1 | 28.788 | 264 | 145 | 9 | 25 | 281 | 28 | 255 | 2.00e-17 | 80.9 |
| Msa1060340 | AT3G46190.2 | 28.788 | 264 | 145 | 9 | 25 | 281 | 48 | 275 | 3.62e-17 | 80.5 |
| Msa1060340 | AT5G06600.3 | 32.026 | 153 | 95 | 4 | 18 | 169 | 42 | 186 | 4.67e-17 | 82.0 |
| Msa1060340 | AT1G65370.1 | 28.723 | 188 | 113 | 5 | 82 | 261 | 1 | 175 | 4.76e-17 | 79.0 |
| Msa1060340 | AT5G06600.2 | 32.026 | 153 | 95 | 4 | 18 | 169 | 41 | 185 | 5.13e-17 | 81.6 |
| Msa1060340 | AT5G06600.1 | 32.026 | 153 | 95 | 4 | 18 | 169 | 42 | 186 | 5.33e-17 | 81.6 |
| Msa1060340 | AT3G11910.3 | 30.769 | 143 | 90 | 4 | 28 | 169 | 51 | 185 | 1.66e-15 | 77.4 |
| Msa1060340 | AT3G11910.1 | 30.769 | 143 | 90 | 4 | 28 | 169 | 51 | 185 | 1.66e-15 | 77.4 |
| Msa1060340 | AT3G11910.4 | 30.769 | 143 | 90 | 4 | 28 | 169 | 50 | 184 | 1.72e-15 | 77.4 |
| Msa1060340 | AT3G11910.2 | 30.769 | 143 | 90 | 4 | 28 | 169 | 50 | 184 | 1.72e-15 | 77.4 |
| Msa1060340 | AT2G32870.1 | 26.820 | 261 | 161 | 9 | 22 | 267 | 117 | 362 | 9.69e-14 | 71.2 |
| Msa1060340 | AT2G32870.2 | 27.239 | 268 | 164 | 10 | 22 | 274 | 117 | 368 | 1.28e-12 | 67.8 |
| Msa1060340 | AT2G32880.1 | 24.621 | 264 | 171 | 9 | 22 | 270 | 17 | 267 | 2.41e-11 | 63.9 |
Find 71 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCAATAGGTAATGAAAT+TGG | 0.139287 | 7_2:+48240527 | None:intergenic |
| TGGCCACGTTTCTATTTATT+TGG | 0.172284 | 7_2:-48240561 | Msa1060340:CDS |
| GTCCTTCTCTTTGCTTTCTA+AGG | 0.213307 | 7_2:-48240845 | Msa1060340:CDS |
| GTGTCAATGTTGATGAAATT+TGG | 0.232113 | 7_2:+48240049 | None:intergenic |
| TTTCCCACAGATTTGGTCTT+TGG | 0.245011 | 7_2:+48239599 | None:intergenic |
| GGATAAGCAATCGCCTTTAT+TGG | 0.263509 | 7_2:+48239949 | None:intergenic |
| AATAGTGACAGGATTTATTA+TGG | 0.278861 | 7_2:+48239928 | None:intergenic |
| CGACTCCATTGGGGTATAAA+AGG | 0.287642 | 7_2:+48239718 | None:intergenic |
| TTTATATGAATCACCTTTCA+TGG | 0.305529 | 7_2:+48241171 | None:intergenic |
| CAACATGTTTCCCACAGATT+TGG | 0.321462 | 7_2:+48239592 | None:intergenic |
| TTCTATTTATTTGGCAATCA+TGG | 0.321583 | 7_2:-48240552 | Msa1060340:CDS |
| CGCAGAAGATAACCTATATA+TGG | 0.324436 | 7_2:+48239554 | None:intergenic |
| CAATTTCATTACCTATTGAT+TGG | 0.338977 | 7_2:-48240526 | Msa1060340:CDS |
| ATATGCTGAAAAGTTTATAA+TGG | 0.340449 | 7_2:+48240493 | None:intergenic |
| ATACCCCAATGGAGTCGTTC+AGG | 0.348702 | 7_2:-48239712 | Msa1060340:CDS |
| TTGTAGCTGGAGACTATAAA+TGG | 0.384295 | 7_2:-48239841 | Msa1060340:intron |
| AGCTTGTCTATATACCCATC+TGG | 0.388009 | 7_2:-48240605 | Msa1060340:CDS |
| TTTCCCTGAACGACTCCATT+GGG | 0.389538 | 7_2:+48239708 | None:intergenic |
| ACGCGAGGAGTGTTCGTGAT+AGG | 0.407207 | 7_2:-48239375 | Msa1060340:three_prime_UTR |
| TCCTCGCGTTATGTGTGTTT+CGG | 0.408181 | 7_2:+48239389 | None:intergenic |
| AATTTCATTACCTATTGATT+GGG | 0.420880 | 7_2:-48240525 | Msa1060340:CDS |
| TTCCTCTCTGTGTTCCCAGA+TGG | 0.430780 | 7_2:+48240590 | None:intergenic |
| AATCAATAGGTAATGAAATT+GGG | 0.431396 | 7_2:+48240528 | None:intergenic |
| CCCTACAAAAGGATATTTGT+TGG | 0.450408 | 7_2:-48240017 | Msa1060340:CDS |
| TCCTCTCTGTGTTCCCAGAT+GGG | 0.451582 | 7_2:+48240591 | None:intergenic |
| GAAAGTGTAAGTCCATATAT+AGG | 0.452528 | 7_2:-48239566 | Msa1060340:CDS |
| CTTTCCCTGAACGACTCCAT+TGG | 0.452741 | 7_2:+48239707 | None:intergenic |
| GCATTGATCTCCCAATCAAT+AGG | 0.467061 | 7_2:+48240515 | None:intergenic |
| ATTTGCAAAATTTCCAGCTG+TGG | 0.483997 | 7_2:+48239903 | None:intergenic |
| TACCCCAATGGAGTCGTTCA+GGG | 0.484655 | 7_2:-48239711 | Msa1060340:CDS |
| TTTGCAAAATTTCCAGCTGT+GGG | 0.488078 | 7_2:+48239904 | None:intergenic |
| CTGTCACTATTTCCCACAGC+TGG | 0.497615 | 7_2:-48239916 | Msa1060340:CDS |
| GTTGTGAAGACTGCCAATAA+AGG | 0.497899 | 7_2:-48239962 | Msa1060340:CDS |
| CAATGGAGTCGTTCAGGGAA+AGG | 0.504185 | 7_2:-48239706 | Msa1060340:CDS |
| GAGTCGGAATCCTTTGTAGC+TGG | 0.507263 | 7_2:-48239854 | Msa1060340:CDS |
| TTGAAGCTGGAGGTTACAAA+TGG | 0.507558 | 7_2:-48240792 | Msa1060340:intron |
| AATGGAGTCGTTCAGGGAAA+GGG | 0.516828 | 7_2:-48239705 | Msa1060340:CDS |
| CAGCTGTGGGAAATAGTGAC+AGG | 0.517244 | 7_2:+48239917 | None:intergenic |
| GTCTCGGAAGAGTTTGAAGC+TGG | 0.523075 | 7_2:-48240805 | Msa1060340:CDS |
| TGTTTACTGTATGTTCTACC+AGG | 0.524328 | 7_2:-48241231 | Msa1060340:CDS |
| AACATGCAGATGCATCTGTT+AGG | 0.533883 | 7_2:-48240105 | Msa1060340:intron |
| TGAATCACCTTTCATGGGTG+TGG | 0.537773 | 7_2:+48241177 | None:intergenic |
| TTATATGAATCACCTTTCAT+GGG | 0.539533 | 7_2:+48241172 | None:intergenic |
| ACATTCAAAGACCCTACAAA+AGG | 0.543496 | 7_2:-48240028 | Msa1060340:CDS |
| TTTATAGTCTCCAGCTACAA+AGG | 0.550212 | 7_2:+48239844 | None:intergenic |
| TCTCAAATTATTAGTGGTGG+CGG | 0.552526 | 7_2:+48239484 | None:intergenic |
| TATACGTGTCTTTGTCGTGT+CGG | 0.559809 | 7_2:-48239439 | Msa1060340:three_prime_UTR |
| TCATGTCCTGAAAACAGAGT+GGG | 0.562047 | 7_2:-48240077 | Msa1060340:CDS |
| TTGAATGTGTAATGACTTGG+CGG | 0.569734 | 7_2:+48240874 | None:intergenic |
| AGGTTATCTTCTGCGAAGCA+TGG | 0.572878 | 7_2:-48239546 | Msa1060340:CDS |
| CGCGCCAAAGACCAAATCTG+TGG | 0.574159 | 7_2:-48239603 | Msa1060340:CDS |
| GGCCTTAGAAAGCAAAGAGA+AGG | 0.575991 | 7_2:+48240843 | None:intergenic |
| ATCTGACACTAAAATTCTCG+TGG | 0.589622 | 7_2:-48239637 | Msa1060340:CDS |
| ACAAACAGTATTCATATCCC+TGG | 0.593819 | 7_2:+48241213 | None:intergenic |
| GATGAATACGTTACAACTCA+AGG | 0.603967 | 7_2:-48240458 | Msa1060340:intron |
| GCTTGTCTATATACCCATCT+GGG | 0.606052 | 7_2:-48240604 | Msa1060340:CDS |
| TTCCCTGAACGACTCCATTG+GGG | 0.610483 | 7_2:+48239709 | None:intergenic |
| TTGTCTACCACACCCATGAA+AGG | 0.611440 | 7_2:-48241184 | Msa1060340:intron |
| TCTGGGAACACAGAGAGGAA+TGG | 0.613084 | 7_2:-48240587 | Msa1060340:CDS |
| TCGGAAGAGTTTGAAGCTGG+AGG | 0.615592 | 7_2:-48240802 | Msa1060340:CDS |
| ATGGATACGAACACAGACAT+CGG | 0.630783 | 7_2:-48239527 | Msa1060340:CDS |
| TTCATGTCCTGAAAACAGAG+TGG | 0.637299 | 7_2:-48240078 | Msa1060340:CDS |
| GTTTACTGTATGTTCTACCA+GGG | 0.640792 | 7_2:-48241230 | Msa1060340:CDS |
| AAATTTAGACAAGTACGAGT+CGG | 0.642137 | 7_2:-48239870 | Msa1060340:CDS |
| GCGCCAAAGACCAAATCTGT+GGG | 0.642900 | 7_2:-48239602 | Msa1060340:CDS |
| ACCCATCTGGGAACACAGAG+AGG | 0.643127 | 7_2:-48240592 | Msa1060340:CDS |
| CATGTCCTGAAAACAGAGTG+GGG | 0.661266 | 7_2:-48240076 | Msa1060340:CDS |
| ATGGGTGTGGTAGACAACAA+TGG | 0.666956 | 7_2:+48241190 | None:intergenic |
| ACCGAAACACACATAACGCG+AGG | 0.674205 | 7_2:-48239390 | Msa1060340:three_prime_UTR |
| AACACAGAGAGGAATGGACA+TGG | 0.678970 | 7_2:-48240581 | Msa1060340:CDS |
| TTGCCAAATAAATAGAAACG+TGG | 0.730686 | 7_2:+48240558 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAACTAATTAATGAA+GGG | + | chr7_2:48239308-48239327 | None:intergenic | 10.0% |
| !! | AAAAAATAACTAATTAATGA+AGG | + | chr7_2:48239309-48239328 | None:intergenic | 10.0% |
| !!! | TAATTAGTTATTTTTTCTTA+AGG | - | chr7_2:48239313-48239332 | Msa1060340:three_prime_UTR | 10.0% |
| !!! | AATTAGTTATTTTTTCTTAA+GGG | - | chr7_2:48239314-48239333 | Msa1060340:three_prime_UTR | 10.0% |
| !!! | TATGTATGATATAAATTTTA+AGG | - | chr7_2:48240210-48240229 | Msa1060340:intron | 10.0% |
| !!! | TAATTTTTTAATATCTTTTC+AGG | - | chr7_2:48240408-48240427 | Msa1060340:intron | 10.0% |
| !! | AATTAATTTATAAGTAGTAT+AGG | + | chr7_2:48240464-48240483 | None:intergenic | 10.0% |
| !! | AAAAATAACTAATTAATGAA+GGG | + | chr7_2:48239308-48239327 | None:intergenic | 10.0% |
| !! | AAAAAATAACTAATTAATGA+AGG | + | chr7_2:48239309-48239328 | None:intergenic | 10.0% |
| !!! | TAATTAGTTATTTTTTCTTA+AGG | - | chr7_2:48239313-48239332 | Msa1060340:three_prime_UTR | 10.0% |
| !!! | AATTAGTTATTTTTTCTTAA+GGG | - | chr7_2:48239314-48239333 | Msa1060340:three_prime_UTR | 10.0% |
| !!! | TATGTATGATATAAATTTTA+AGG | - | chr7_2:48240210-48240229 | Msa1060340:intron | 10.0% |
| !!! | TAATTTTTTAATATCTTTTC+AGG | - | chr7_2:48240408-48240427 | Msa1060340:intron | 10.0% |
| !! | AATTAATTTATAAGTAGTAT+AGG | + | chr7_2:48240464-48240483 | None:intergenic | 10.0% |
| !!! | TTTATATTGATATCTTTTAC+AGG | - | chr7_2:48239686-48239705 | Msa1060340:CDS | 15.0% |
| !!! | TATGATATAAATTTTAAGGT+TGG | - | chr7_2:48240214-48240233 | Msa1060340:intron | 15.0% |
| !! | AGCTAAAAATAATGAAATAT+GGG | + | chr7_2:48240916-48240935 | None:intergenic | 15.0% |
| !!! | TTTATATTGATATCTTTTAC+AGG | - | chr7_2:48239686-48239705 | Msa1060340:CDS | 15.0% |
| !!! | TATGATATAAATTTTAAGGT+TGG | - | chr7_2:48240214-48240233 | Msa1060340:intron | 15.0% |
| !! | AGCTAAAAATAATGAAATAT+GGG | + | chr7_2:48240916-48240935 | None:intergenic | 15.0% |
| !!! | CTTTTTCGATTTAGTATTTA+GGG | + | chr7_2:48239576-48239595 | None:intergenic | 20.0% |
| !!! | ACTTTTTCGATTTAGTATTT+AGG | + | chr7_2:48239577-48239596 | None:intergenic | 20.0% |
| !! | AGATTAGATACATTAAAAGA+AGG | - | chr7_2:48239623-48239642 | Msa1060340:CDS | 20.0% |
| !! | AATGGTATGTAAATGTATTT+AGG | - | chr7_2:48239819-48239838 | Msa1060340:intron | 20.0% |
| !! | AATCAATAGGTAATGAAATT+GGG | + | chr7_2:48240068-48240087 | None:intergenic | 20.0% |
| !!! | AATTTCATTACCTATTGATT+GGG | - | chr7_2:48240068-48240087 | Msa1060340:CDS | 20.0% |
| !! | ATATGCTGAAAAGTTTATAA+TGG | + | chr7_2:48240103-48240122 | None:intergenic | 20.0% |
| !! | ATGATATTTAATCACTAACT+TGG | + | chr7_2:48240324-48240343 | None:intergenic | 20.0% |
| !! | TTTATAAGTAGTATAGGATA+AGG | + | chr7_2:48240458-48240477 | None:intergenic | 20.0% |
| !! | GAGCTAAAAATAATGAAATA+TGG | + | chr7_2:48240917-48240936 | None:intergenic | 20.0% |
| !!! | TATTTCATTATTTTTAGCTC+TGG | - | chr7_2:48240917-48240936 | Msa1060340:intron | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+TGG | + | chr7_2:48241118-48241137 | None:intergenic | 20.0% |
| !! | AAAAATTAAGAGATTATCAC+AGG | + | chr7_2:48241264-48241283 | None:intergenic | 20.0% |
| !!! | CTTTTTCGATTTAGTATTTA+GGG | + | chr7_2:48239576-48239595 | None:intergenic | 20.0% |
| !!! | ACTTTTTCGATTTAGTATTT+AGG | + | chr7_2:48239577-48239596 | None:intergenic | 20.0% |
| !! | AGATTAGATACATTAAAAGA+AGG | - | chr7_2:48239623-48239642 | Msa1060340:CDS | 20.0% |
| !! | AATGGTATGTAAATGTATTT+AGG | - | chr7_2:48239819-48239838 | Msa1060340:intron | 20.0% |
| !! | AATCAATAGGTAATGAAATT+GGG | + | chr7_2:48240068-48240087 | None:intergenic | 20.0% |
| !!! | AATTTCATTACCTATTGATT+GGG | - | chr7_2:48240068-48240087 | Msa1060340:CDS | 20.0% |
| !! | ATATGCTGAAAAGTTTATAA+TGG | + | chr7_2:48240103-48240122 | None:intergenic | 20.0% |
| !! | ATGATATTTAATCACTAACT+TGG | + | chr7_2:48240324-48240343 | None:intergenic | 20.0% |
| !! | TTTATAAGTAGTATAGGATA+AGG | + | chr7_2:48240458-48240477 | None:intergenic | 20.0% |
| !! | GAGCTAAAAATAATGAAATA+TGG | + | chr7_2:48240917-48240936 | None:intergenic | 20.0% |
| !!! | TATTTCATTATTTTTAGCTC+TGG | - | chr7_2:48240917-48240936 | Msa1060340:intron | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+TGG | + | chr7_2:48241118-48241137 | None:intergenic | 20.0% |
| !! | AAAAATTAAGAGATTATCAC+AGG | + | chr7_2:48241264-48241283 | None:intergenic | 20.0% |
| ! | TTATATGAATCACCTTTCAT+GGG | + | chr7_2:48239424-48239443 | None:intergenic | 25.0% |
| ! | TTTATATGAATCACCTTTCA+TGG | + | chr7_2:48239425-48239444 | None:intergenic | 25.0% |
| ! | TGATTCATATAAACAACAGT+TGG | - | chr7_2:48239432-48239451 | Msa1060340:three_prime_UTR | 25.0% |
| ! | TTAGATACATTAAAAGAAGG+TGG | - | chr7_2:48239626-48239645 | Msa1060340:CDS | 25.0% |
| !! | TATTGATATCTTTTACAGGA+AGG | - | chr7_2:48239690-48239709 | Msa1060340:CDS | 25.0% |
| !! | ATTTTGAATGTGTAATGACT+TGG | + | chr7_2:48239725-48239744 | None:intergenic | 25.0% |
| ! | TGTATTTAGGCCTTAAATAA+TGG | - | chr7_2:48239832-48239851 | Msa1060340:intron | 25.0% |
| ! | TTCTATTTATTTGGCAATCA+TGG | - | chr7_2:48240041-48240060 | Msa1060340:CDS | 25.0% |
| ! | CAATCAATAGGTAATGAAAT+TGG | + | chr7_2:48240069-48240088 | None:intergenic | 25.0% |
| ! | CAATTTCATTACCTATTGAT+TGG | - | chr7_2:48240067-48240086 | Msa1060340:CDS | 25.0% |
| ! | GTTATATATTCTGTTAGGTT+TGG | - | chr7_2:48240236-48240255 | Msa1060340:intron | 25.0% |
| !!! | TTGACATGAGCTATTTTATA+GGG | - | chr7_2:48240363-48240382 | Msa1060340:intron | 25.0% |
| !! | TTGGATGATAATTGTGTTTT+TGG | - | chr7_2:48240595-48240614 | Msa1060340:CDS | 25.0% |
| ! | AATAGTGACAGGATTTATTA+TGG | + | chr7_2:48240668-48240687 | None:intergenic | 25.0% |
| !! | GTAACAAATTTTATGTTCTC+TGG | - | chr7_2:48240828-48240847 | Msa1060340:CDS | 25.0% |
| !!! | CTGGCTATTTTTTTTTTAAC+AGG | - | chr7_2:48240847-48240866 | Msa1060340:CDS | 25.0% |
| !! | TTTTCTCAAATTATTAGTGG+TGG | + | chr7_2:48241115-48241134 | None:intergenic | 25.0% |
| !!! | ATTAATGAAGGGTTTTATCT+GGG | + | chr7_2:48239297-48239316 | None:intergenic | 25.0% |
| !!! | AATTAATGAAGGGTTTTATC+TGG | + | chr7_2:48239298-48239317 | None:intergenic | 25.0% |
| ! | TTATATGAATCACCTTTCAT+GGG | + | chr7_2:48239424-48239443 | None:intergenic | 25.0% |
| ! | TTTATATGAATCACCTTTCA+TGG | + | chr7_2:48239425-48239444 | None:intergenic | 25.0% |
| ! | TGATTCATATAAACAACAGT+TGG | - | chr7_2:48239432-48239451 | Msa1060340:three_prime_UTR | 25.0% |
| ! | TTAGATACATTAAAAGAAGG+TGG | - | chr7_2:48239626-48239645 | Msa1060340:CDS | 25.0% |
| !! | TATTGATATCTTTTACAGGA+AGG | - | chr7_2:48239690-48239709 | Msa1060340:CDS | 25.0% |
| !! | ATTTTGAATGTGTAATGACT+TGG | + | chr7_2:48239725-48239744 | None:intergenic | 25.0% |
| ! | TGTATTTAGGCCTTAAATAA+TGG | - | chr7_2:48239832-48239851 | Msa1060340:intron | 25.0% |
| ! | TTCTATTTATTTGGCAATCA+TGG | - | chr7_2:48240041-48240060 | Msa1060340:CDS | 25.0% |
| ! | CAATCAATAGGTAATGAAAT+TGG | + | chr7_2:48240069-48240088 | None:intergenic | 25.0% |
| ! | CAATTTCATTACCTATTGAT+TGG | - | chr7_2:48240067-48240086 | Msa1060340:CDS | 25.0% |
| ! | GTTATATATTCTGTTAGGTT+TGG | - | chr7_2:48240236-48240255 | Msa1060340:intron | 25.0% |
| !!! | TTGACATGAGCTATTTTATA+GGG | - | chr7_2:48240363-48240382 | Msa1060340:intron | 25.0% |
| !! | TTGGATGATAATTGTGTTTT+TGG | - | chr7_2:48240595-48240614 | Msa1060340:CDS | 25.0% |
| ! | AATAGTGACAGGATTTATTA+TGG | + | chr7_2:48240668-48240687 | None:intergenic | 25.0% |
| !! | GTAACAAATTTTATGTTCTC+TGG | - | chr7_2:48240828-48240847 | Msa1060340:CDS | 25.0% |
| !!! | CTGGCTATTTTTTTTTTAAC+AGG | - | chr7_2:48240847-48240866 | Msa1060340:CDS | 25.0% |
| !! | TTTTCTCAAATTATTAGTGG+TGG | + | chr7_2:48241115-48241134 | None:intergenic | 25.0% |
| TTCTTGCTGACCATTATTTA+AGG | + | chr7_2:48239845-48239864 | None:intergenic | 30.0% | |
| TTGCCAAATAAATAGAAACG+TGG | + | chr7_2:48240038-48240057 | None:intergenic | 30.0% | |
| ! | GGTTGGTTATATATTCTGTT+AGG | - | chr7_2:48240231-48240250 | Msa1060340:intron | 30.0% |
| !! | CTTGACATGAGCTATTTTAT+AGG | - | chr7_2:48240362-48240381 | Msa1060340:intron | 30.0% |
| ! | GTGTCAATGTTGATGAAATT+TGG | + | chr7_2:48240547-48240566 | None:intergenic | 30.0% |
| ! | CCAACAAATATCCTTTTGTA+GGG | + | chr7_2:48240579-48240598 | None:intergenic | 30.0% |
| ! | TCCAACAAATATCCTTTTGT+AGG | + | chr7_2:48240580-48240599 | None:intergenic | 30.0% |
| AAATTTAGACAAGTACGAGT+CGG | - | chr7_2:48240723-48240742 | Msa1060340:intron | 30.0% | |
| !! | TCTTATTACTAGCTTGTTGT+AGG | - | chr7_2:48240804-48240823 | Msa1060340:CDS | 30.0% |
| ! | GAAAGTGTAAGTCCATATAT+AGG | - | chr7_2:48241027-48241046 | Msa1060340:intron | 30.0% |
| TTCTTGCTGACCATTATTTA+AGG | + | chr7_2:48239845-48239864 | None:intergenic | 30.0% | |
| TTGCCAAATAAATAGAAACG+TGG | + | chr7_2:48240038-48240057 | None:intergenic | 30.0% | |
| ! | GGTTGGTTATATATTCTGTT+AGG | - | chr7_2:48240231-48240250 | Msa1060340:intron | 30.0% |
| !! | CTTGACATGAGCTATTTTAT+AGG | - | chr7_2:48240362-48240381 | Msa1060340:intron | 30.0% |
| ! | GTGTCAATGTTGATGAAATT+TGG | + | chr7_2:48240547-48240566 | None:intergenic | 30.0% |
| ! | CCAACAAATATCCTTTTGTA+GGG | + | chr7_2:48240579-48240598 | None:intergenic | 30.0% |
| ! | TCCAACAAATATCCTTTTGT+AGG | + | chr7_2:48240580-48240599 | None:intergenic | 30.0% |
| AAATTTAGACAAGTACGAGT+CGG | - | chr7_2:48240723-48240742 | Msa1060340:intron | 30.0% | |
| !! | TCTTATTACTAGCTTGTTGT+AGG | - | chr7_2:48240804-48240823 | Msa1060340:CDS | 30.0% |
| ! | GAAAGTGTAAGTCCATATAT+AGG | - | chr7_2:48241027-48241046 | Msa1060340:intron | 30.0% |
| TGTTTACTGTATGTTCTACC+AGG | - | chr7_2:48239362-48239381 | Msa1060340:three_prime_UTR | 35.0% | |
| GTTTACTGTATGTTCTACCA+GGG | - | chr7_2:48239363-48239382 | Msa1060340:three_prime_UTR | 35.0% | |
| ACAAACAGTATTCATATCCC+TGG | + | chr7_2:48239383-48239402 | None:intergenic | 35.0% | |
| ! | TTGAATGTGTAATGACTTGG+CGG | + | chr7_2:48239722-48239741 | None:intergenic | 35.0% |
| CTCCATTGAAAAATGTGTCT+CGG | - | chr7_2:48239772-48239791 | Msa1060340:intron | 35.0% | |
| !! | TTCCGAGACACATTTTTCAA+TGG | + | chr7_2:48239777-48239796 | None:intergenic | 35.0% |
| TTAAACTTTCGTTCATGCGT+AGG | - | chr7_2:48239965-48239984 | Msa1060340:CDS | 35.0% | |
| TGGCCACGTTTCTATTTATT+TGG | - | chr7_2:48240032-48240051 | Msa1060340:CDS | 35.0% | |
| GATGAATACGTTACAACTCA+AGG | - | chr7_2:48240135-48240154 | Msa1060340:intron | 35.0% | |
| ACATTCAAAGACCCTACAAA+AGG | - | chr7_2:48240565-48240584 | Msa1060340:CDS | 35.0% | |
| CCCTACAAAAGGATATTTGT+TGG | - | chr7_2:48240576-48240595 | Msa1060340:CDS | 35.0% | |
| !!! | TAATTGTGTTTTTGGAGCTG+AGG | - | chr7_2:48240603-48240622 | Msa1060340:CDS | 35.0% |
| TTTGCAAAATTTCCAGCTGT+GGG | + | chr7_2:48240692-48240711 | None:intergenic | 35.0% | |
| ATTTGCAAAATTTCCAGCTG+TGG | + | chr7_2:48240693-48240712 | None:intergenic | 35.0% | |
| TTTATAGTCTCCAGCTACAA+AGG | + | chr7_2:48240752-48240771 | None:intergenic | 35.0% | |
| TTGTAGCTGGAGACTATAAA+TGG | - | chr7_2:48240752-48240771 | Msa1060340:intron | 35.0% | |
| !! | CGAGAATTTTAGTGTCAGAT+GGG | + | chr7_2:48240956-48240975 | None:intergenic | 35.0% |
| !! | ACGAGAATTTTAGTGTCAGA+TGG | + | chr7_2:48240957-48240976 | None:intergenic | 35.0% |
| ATCTGACACTAAAATTCTCG+TGG | - | chr7_2:48240956-48240975 | Msa1060340:intron | 35.0% | |
| CGCAGAAGATAACCTATATA+TGG | + | chr7_2:48241042-48241061 | None:intergenic | 35.0% | |
| TCTCAAATTATTAGTGGTGG+CGG | + | chr7_2:48241112-48241131 | None:intergenic | 35.0% | |
| TGTTTACTGTATGTTCTACC+AGG | - | chr7_2:48239362-48239381 | Msa1060340:three_prime_UTR | 35.0% | |
| GTTTACTGTATGTTCTACCA+GGG | - | chr7_2:48239363-48239382 | Msa1060340:three_prime_UTR | 35.0% | |
| ACAAACAGTATTCATATCCC+TGG | + | chr7_2:48239383-48239402 | None:intergenic | 35.0% | |
| ! | TTGAATGTGTAATGACTTGG+CGG | + | chr7_2:48239722-48239741 | None:intergenic | 35.0% |
| CTCCATTGAAAAATGTGTCT+CGG | - | chr7_2:48239772-48239791 | Msa1060340:intron | 35.0% | |
| !! | TTCCGAGACACATTTTTCAA+TGG | + | chr7_2:48239777-48239796 | None:intergenic | 35.0% |
| TTAAACTTTCGTTCATGCGT+AGG | - | chr7_2:48239965-48239984 | Msa1060340:CDS | 35.0% | |
| TGGCCACGTTTCTATTTATT+TGG | - | chr7_2:48240032-48240051 | Msa1060340:CDS | 35.0% | |
| GATGAATACGTTACAACTCA+AGG | - | chr7_2:48240135-48240154 | Msa1060340:intron | 35.0% | |
| ACATTCAAAGACCCTACAAA+AGG | - | chr7_2:48240565-48240584 | Msa1060340:CDS | 35.0% | |
| CCCTACAAAAGGATATTTGT+TGG | - | chr7_2:48240576-48240595 | Msa1060340:CDS | 35.0% | |
| !!! | TAATTGTGTTTTTGGAGCTG+AGG | - | chr7_2:48240603-48240622 | Msa1060340:CDS | 35.0% |
| TTTGCAAAATTTCCAGCTGT+GGG | + | chr7_2:48240692-48240711 | None:intergenic | 35.0% | |
| ATTTGCAAAATTTCCAGCTG+TGG | + | chr7_2:48240693-48240712 | None:intergenic | 35.0% | |
| TTTATAGTCTCCAGCTACAA+AGG | + | chr7_2:48240752-48240771 | None:intergenic | 35.0% | |
| TTGTAGCTGGAGACTATAAA+TGG | - | chr7_2:48240752-48240771 | Msa1060340:intron | 35.0% | |
| !! | CGAGAATTTTAGTGTCAGAT+GGG | + | chr7_2:48240956-48240975 | None:intergenic | 35.0% |
| !! | ACGAGAATTTTAGTGTCAGA+TGG | + | chr7_2:48240957-48240976 | None:intergenic | 35.0% |
| ATCTGACACTAAAATTCTCG+TGG | - | chr7_2:48240956-48240975 | Msa1060340:intron | 35.0% | |
| CGCAGAAGATAACCTATATA+TGG | + | chr7_2:48241042-48241061 | None:intergenic | 35.0% | |
| TCTCAAATTATTAGTGGTGG+CGG | + | chr7_2:48241112-48241131 | None:intergenic | 35.0% | |
| GTCCTTCTCTTTGCTTTCTA+AGG | - | chr7_2:48239748-48239767 | Msa1060340:intron | 40.0% | |
| !! | CGAGACACATTTTTCAATGG+AGG | + | chr7_2:48239774-48239793 | None:intergenic | 40.0% |
| TTGAAGCTGGAGGTTACAAA+TGG | - | chr7_2:48239801-48239820 | Msa1060340:intron | 40.0% | |
| AGCTTGTCTATATACCCATC+TGG | - | chr7_2:48239988-48240007 | Msa1060340:CDS | 40.0% | |
| GCTTGTCTATATACCCATCT+GGG | - | chr7_2:48239989-48240008 | Msa1060340:CDS | 40.0% | |
| ! | GCATTGATCTCCCAATCAAT+AGG | + | chr7_2:48240081-48240100 | None:intergenic | 40.0% |
| AACATGCAGATGCATCTGTT+AGG | - | chr7_2:48240488-48240507 | Msa1060340:CDS | 40.0% | |
| TTCATGTCCTGAAAACAGAG+TGG | - | chr7_2:48240515-48240534 | Msa1060340:CDS | 40.0% | |
| TCATGTCCTGAAAACAGAGT+GGG | - | chr7_2:48240516-48240535 | Msa1060340:CDS | 40.0% | |
| GTTGTGAAGACTGCCAATAA+AGG | - | chr7_2:48240631-48240650 | Msa1060340:intron | 40.0% | |
| GGATAAGCAATCGCCTTTAT+TGG | + | chr7_2:48240647-48240666 | None:intergenic | 40.0% | |
| ! | AAGCTCCTTTTATACCCCAA+TGG | - | chr7_2:48240870-48240889 | Msa1060340:CDS | 40.0% |
| ! | TTTCCCACAGATTTGGTCTT+TGG | + | chr7_2:48240997-48241016 | None:intergenic | 40.0% |
| CAACATGTTTCCCACAGATT+TGG | + | chr7_2:48241004-48241023 | None:intergenic | 40.0% | |
| ATGGATACGAACACAGACAT+CGG | - | chr7_2:48241066-48241085 | Msa1060340:intron | 40.0% | |
| TATACGTGTCTTTGTCGTGT+CGG | - | chr7_2:48241154-48241173 | Msa1060340:intron | 40.0% | |
| GTCCTTCTCTTTGCTTTCTA+AGG | - | chr7_2:48239748-48239767 | Msa1060340:intron | 40.0% | |
| !! | CGAGACACATTTTTCAATGG+AGG | + | chr7_2:48239774-48239793 | None:intergenic | 40.0% |
| TTGAAGCTGGAGGTTACAAA+TGG | - | chr7_2:48239801-48239820 | Msa1060340:intron | 40.0% | |
| AGCTTGTCTATATACCCATC+TGG | - | chr7_2:48239988-48240007 | Msa1060340:CDS | 40.0% | |
| GCTTGTCTATATACCCATCT+GGG | - | chr7_2:48239989-48240008 | Msa1060340:CDS | 40.0% | |
| ! | GCATTGATCTCCCAATCAAT+AGG | + | chr7_2:48240081-48240100 | None:intergenic | 40.0% |
| AACATGCAGATGCATCTGTT+AGG | - | chr7_2:48240488-48240507 | Msa1060340:CDS | 40.0% | |
| TTCATGTCCTGAAAACAGAG+TGG | - | chr7_2:48240515-48240534 | Msa1060340:CDS | 40.0% | |
| TCATGTCCTGAAAACAGAGT+GGG | - | chr7_2:48240516-48240535 | Msa1060340:CDS | 40.0% | |
| GTTGTGAAGACTGCCAATAA+AGG | - | chr7_2:48240631-48240650 | Msa1060340:intron | 40.0% | |
| GGATAAGCAATCGCCTTTAT+TGG | + | chr7_2:48240647-48240666 | None:intergenic | 40.0% | |
| ! | AAGCTCCTTTTATACCCCAA+TGG | - | chr7_2:48240870-48240889 | Msa1060340:CDS | 40.0% |
| ! | TTTCCCACAGATTTGGTCTT+TGG | + | chr7_2:48240997-48241016 | None:intergenic | 40.0% |
| CAACATGTTTCCCACAGATT+TGG | + | chr7_2:48241004-48241023 | None:intergenic | 40.0% | |
| ATGGATACGAACACAGACAT+CGG | - | chr7_2:48241066-48241085 | Msa1060340:intron | 40.0% | |
| TATACGTGTCTTTGTCGTGT+CGG | - | chr7_2:48241154-48241173 | Msa1060340:intron | 40.0% | |
| ATGGGTGTGGTAGACAACAA+TGG | + | chr7_2:48239406-48239425 | None:intergenic | 45.0% | |
| TTGTCTACCACACCCATGAA+AGG | - | chr7_2:48239409-48239428 | Msa1060340:three_prime_UTR | 45.0% | |
| TGAATCACCTTTCATGGGTG+TGG | + | chr7_2:48239419-48239438 | None:intergenic | 45.0% | |
| TTCAGAAGACCACCTCTAGT+TGG | - | chr7_2:48239542-48239561 | Msa1060340:CDS | 45.0% | |
| GGCCTTAGAAAGCAAAGAGA+AGG | + | chr7_2:48239753-48239772 | None:intergenic | 45.0% | |
| AACACAGAGAGGAATGGACA+TGG | - | chr7_2:48240012-48240031 | Msa1060340:CDS | 45.0% | |
| CATGTCCTGAAAACAGAGTG+GGG | - | chr7_2:48240517-48240536 | Msa1060340:CDS | 45.0% | |
| ! | GAATACCCCACTCTGTTTTC+AGG | + | chr7_2:48240525-48240544 | None:intergenic | 45.0% |
| CGACTCCATTGGGGTATAAA+AGG | + | chr7_2:48240878-48240897 | None:intergenic | 45.0% | |
| TTTCCCTGAACGACTCCATT+GGG | + | chr7_2:48240888-48240907 | None:intergenic | 45.0% | |
| AATGGAGTCGTTCAGGGAAA+GGG | - | chr7_2:48240888-48240907 | Msa1060340:CDS | 45.0% | |
| AGGTTATCTTCTGCGAAGCA+TGG | - | chr7_2:48241047-48241066 | Msa1060340:intron | 45.0% | |
| TCCTCGCGTTATGTGTGTTT+CGG | + | chr7_2:48241207-48241226 | None:intergenic | 45.0% | |
| ATGGGTGTGGTAGACAACAA+TGG | + | chr7_2:48239406-48239425 | None:intergenic | 45.0% | |
| TTGTCTACCACACCCATGAA+AGG | - | chr7_2:48239409-48239428 | Msa1060340:three_prime_UTR | 45.0% | |
| TGAATCACCTTTCATGGGTG+TGG | + | chr7_2:48239419-48239438 | None:intergenic | 45.0% | |
| TTCAGAAGACCACCTCTAGT+TGG | - | chr7_2:48239542-48239561 | Msa1060340:CDS | 45.0% | |
| GGCCTTAGAAAGCAAAGAGA+AGG | + | chr7_2:48239753-48239772 | None:intergenic | 45.0% | |
| AACACAGAGAGGAATGGACA+TGG | - | chr7_2:48240012-48240031 | Msa1060340:CDS | 45.0% | |
| CATGTCCTGAAAACAGAGTG+GGG | - | chr7_2:48240517-48240536 | Msa1060340:CDS | 45.0% | |
| ! | GAATACCCCACTCTGTTTTC+AGG | + | chr7_2:48240525-48240544 | None:intergenic | 45.0% |
| CGACTCCATTGGGGTATAAA+AGG | + | chr7_2:48240878-48240897 | None:intergenic | 45.0% | |
| TTTCCCTGAACGACTCCATT+GGG | + | chr7_2:48240888-48240907 | None:intergenic | 45.0% | |
| AATGGAGTCGTTCAGGGAAA+GGG | - | chr7_2:48240888-48240907 | Msa1060340:CDS | 45.0% | |
| AGGTTATCTTCTGCGAAGCA+TGG | - | chr7_2:48241047-48241066 | Msa1060340:intron | 45.0% | |
| TCCTCGCGTTATGTGTGTTT+CGG | + | chr7_2:48241207-48241226 | None:intergenic | 45.0% | |
| ! | GTCTCGGAAGAGTTTGAAGC+TGG | - | chr7_2:48239788-48239807 | Msa1060340:intron | 50.0% |
| ! | TCGGAAGAGTTTGAAGCTGG+AGG | - | chr7_2:48239791-48239810 | Msa1060340:intron | 50.0% |
| TCCTCTCTGTGTTCCCAGAT+GGG | + | chr7_2:48240005-48240024 | None:intergenic | 50.0% | |
| TTCCTCTCTGTGTTCCCAGA+TGG | + | chr7_2:48240006-48240025 | None:intergenic | 50.0% | |
| TCTGGGAACACAGAGAGGAA+TGG | - | chr7_2:48240006-48240025 | Msa1060340:CDS | 50.0% | |
| CAGCTGTGGGAAATAGTGAC+AGG | + | chr7_2:48240679-48240698 | None:intergenic | 50.0% | |
| CTGTCACTATTTCCCACAGC+TGG | - | chr7_2:48240677-48240696 | Msa1060340:intron | 50.0% | |
| GAGTCGGAATCCTTTGTAGC+TGG | - | chr7_2:48240739-48240758 | Msa1060340:intron | 50.0% | |
| ATACCCCAATGGAGTCGTTC+AGG | - | chr7_2:48240881-48240900 | Msa1060340:CDS | 50.0% | |
| TACCCCAATGGAGTCGTTCA+GGG | - | chr7_2:48240882-48240901 | Msa1060340:CDS | 50.0% | |
| TTCCCTGAACGACTCCATTG+GGG | + | chr7_2:48240887-48240906 | None:intergenic | 50.0% | |
| CTTTCCCTGAACGACTCCAT+TGG | + | chr7_2:48240889-48240908 | None:intergenic | 50.0% | |
| CAATGGAGTCGTTCAGGGAA+AGG | - | chr7_2:48240887-48240906 | Msa1060340:CDS | 50.0% | |
| GCGCCAAAGACCAAATCTGT+GGG | - | chr7_2:48240991-48241010 | Msa1060340:intron | 50.0% | |
| ACCGAAACACACATAACGCG+AGG | - | chr7_2:48241203-48241222 | Msa1060340:CDS | 50.0% | |
| ! | GTCTCGGAAGAGTTTGAAGC+TGG | - | chr7_2:48239788-48239807 | Msa1060340:intron | 50.0% |
| ! | TCGGAAGAGTTTGAAGCTGG+AGG | - | chr7_2:48239791-48239810 | Msa1060340:intron | 50.0% |
| TCCTCTCTGTGTTCCCAGAT+GGG | + | chr7_2:48240005-48240024 | None:intergenic | 50.0% | |
| TTCCTCTCTGTGTTCCCAGA+TGG | + | chr7_2:48240006-48240025 | None:intergenic | 50.0% | |
| TCTGGGAACACAGAGAGGAA+TGG | - | chr7_2:48240006-48240025 | Msa1060340:CDS | 50.0% | |
| CAGCTGTGGGAAATAGTGAC+AGG | + | chr7_2:48240679-48240698 | None:intergenic | 50.0% | |
| CTGTCACTATTTCCCACAGC+TGG | - | chr7_2:48240677-48240696 | Msa1060340:intron | 50.0% | |
| GAGTCGGAATCCTTTGTAGC+TGG | - | chr7_2:48240739-48240758 | Msa1060340:intron | 50.0% | |
| ATACCCCAATGGAGTCGTTC+AGG | - | chr7_2:48240881-48240900 | Msa1060340:CDS | 50.0% | |
| TACCCCAATGGAGTCGTTCA+GGG | - | chr7_2:48240882-48240901 | Msa1060340:CDS | 50.0% | |
| TTCCCTGAACGACTCCATTG+GGG | + | chr7_2:48240887-48240906 | None:intergenic | 50.0% | |
| CTTTCCCTGAACGACTCCAT+TGG | + | chr7_2:48240889-48240908 | None:intergenic | 50.0% | |
| CAATGGAGTCGTTCAGGGAA+AGG | - | chr7_2:48240887-48240906 | Msa1060340:CDS | 50.0% | |
| GCGCCAAAGACCAAATCTGT+GGG | - | chr7_2:48240991-48241010 | Msa1060340:intron | 50.0% | |
| ACCGAAACACACATAACGCG+AGG | - | chr7_2:48241203-48241222 | Msa1060340:CDS | 50.0% | |
| GCAAGCACACCAACTAGAGG+TGG | + | chr7_2:48239554-48239573 | None:intergenic | 55.0% | |
| AGGGCAAGCACACCAACTAG+AGG | + | chr7_2:48239557-48239576 | None:intergenic | 55.0% | |
| ACCCATCTGGGAACACAGAG+AGG | - | chr7_2:48240001-48240020 | Msa1060340:CDS | 55.0% | |
| CGCGCCAAAGACCAAATCTG+TGG | - | chr7_2:48240990-48241009 | Msa1060340:intron | 55.0% | |
| !! | ACGCGAGGAGTGTTCGTGAT+AGG | - | chr7_2:48241218-48241237 | Msa1060340:CDS | 55.0% |
| GCAAGCACACCAACTAGAGG+TGG | + | chr7_2:48239554-48239573 | None:intergenic | 55.0% | |
| AGGGCAAGCACACCAACTAG+AGG | + | chr7_2:48239557-48239576 | None:intergenic | 55.0% | |
| ACCCATCTGGGAACACAGAG+AGG | - | chr7_2:48240001-48240020 | Msa1060340:CDS | 55.0% | |
| CGCGCCAAAGACCAAATCTG+TGG | - | chr7_2:48240990-48241009 | Msa1060340:intron | 55.0% | |
| !! | ACGCGAGGAGTGTTCGTGAT+AGG | - | chr7_2:48241218-48241237 | Msa1060340:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 48239297 | 48241318 | 48239297 | ID=Msa1060340;Name=Msa1060340 |
| chr7_2 | mRNA | 48239297 | 48241318 | 48239297 | ID=Msa1060340-mRNA-1;Parent=Msa1060340;Name=Msa1060340-mRNA-1;_AED=0.26;_eAED=0.26;_QI=64|1|1|1|1|1|5|197|294 |
| chr7_2 | exon | 48239297 | 48239746 | 48239297 | ID=Msa1060340-mRNA-1:exon:8729;Parent=Msa1060340-mRNA-1 |
| chr7_2 | exon | 48239842 | 48240118 | 48239842 | ID=Msa1060340-mRNA-1:exon:8728;Parent=Msa1060340-mRNA-1 |
| chr7_2 | exon | 48240459 | 48240628 | 48240459 | ID=Msa1060340-mRNA-1:exon:8727;Parent=Msa1060340-mRNA-1 |
| chr7_2 | exon | 48240793 | 48240907 | 48240793 | ID=Msa1060340-mRNA-1:exon:8726;Parent=Msa1060340-mRNA-1 |
| chr7_2 | exon | 48241185 | 48241318 | 48241185 | ID=Msa1060340-mRNA-1:exon:8725;Parent=Msa1060340-mRNA-1 |
| chr7_2 | five_prime_UTR | 48241255 | 48241318 | 48241255 | ID=Msa1060340-mRNA-1:five_prime_utr;Parent=Msa1060340-mRNA-1 |
| chr7_2 | CDS | 48241185 | 48241254 | 48241185 | ID=Msa1060340-mRNA-1:cds;Parent=Msa1060340-mRNA-1 |
| chr7_2 | CDS | 48240793 | 48240907 | 48240793 | ID=Msa1060340-mRNA-1:cds;Parent=Msa1060340-mRNA-1 |
| chr7_2 | CDS | 48240459 | 48240628 | 48240459 | ID=Msa1060340-mRNA-1:cds;Parent=Msa1060340-mRNA-1 |
| chr7_2 | CDS | 48239842 | 48240118 | 48239842 | ID=Msa1060340-mRNA-1:cds;Parent=Msa1060340-mRNA-1 |
| chr7_2 | CDS | 48239494 | 48239746 | 48239494 | ID=Msa1060340-mRNA-1:cds;Parent=Msa1060340-mRNA-1 |
| chr7_2 | three_prime_UTR | 48239297 | 48239493 | 48239297 | ID=Msa1060340-mRNA-1:three_prime_utr;Parent=Msa1060340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
