Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0082550 | XP_013469215.1 | 98.990 | 99 | 1 | 0 | 1 | 99 | 1 | 99 | 3.85e-65 | 201 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0082550 | sp|O82255|GRC13_ARATH | 72.449 | 98 | 27 | 0 | 1 | 98 | 1 | 98 | 2.01e-51 | 159 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0082550 | A0A072VPA8 | 98.990 | 99 | 1 | 0 | 1 | 99 | 1 | 99 | 1.84e-65 | 201 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0082540 | Msa0082550 | 0.871389 | 7.094436e-67 | -8.615850e-47 |
Msa0082550 | Msa0138230 | 0.889444 | 2.408772e-73 | -8.615850e-47 |
Msa0082550 | Msa0138240 | 0.995542 | 2.586285e-217 | -8.615850e-47 |
Msa0082550 | Msa0175630 | 0.967924 | 5.952312e-128 | -8.615850e-47 |
Msa0082550 | Msa0175640 | 0.856719 | 2.659925e-62 | -8.615850e-47 |
Msa0082550 | Msa0213090 | 0.800541 | 1.373071e-48 | -8.615850e-47 |
Msa0082550 | Msa0253370 | 0.810072 | 1.382122e-50 | -8.615850e-47 |
Msa0082550 | Msa0264940 | -0.812814 | 3.507571e-51 | -8.615850e-47 |
Msa0082550 | Msa0302990 | -0.815257 | 1.013977e-51 | -8.615850e-47 |
Msa0082550 | Msa0330400 | 0.805649 | 1.205353e-49 | -8.615850e-47 |
Msa0082550 | Msa0365360 | 0.816469 | 5.442985e-52 | -8.615850e-47 |
Msa0082550 | Msa0416800 | 0.838523 | 2.734177e-57 | -8.615850e-47 |
Msa0082550 | Msa0463460 | 0.815318 | 9.828502e-52 | -8.615850e-47 |
Msa0082550 | Msa0509020 | 0.803300 | 3.723610e-49 | -8.615850e-47 |
Msa0082550 | Msa0626230 | 0.817579 | 3.065265e-52 | -8.615850e-47 |
Msa0082550 | Msa0649710 | 0.802309 | 5.965260e-49 | -8.615850e-47 |
Msa0082550 | Msa0685880 | 0.811151 | 8.078929e-51 | -8.615850e-47 |
Msa0082550 | Msa0723140 | 0.806742 | 7.096104e-50 | -8.615850e-47 |
Msa0082550 | Msa0775580 | 0.800116 | 1.675869e-48 | -8.615850e-47 |
Msa0082550 | Msa0782340 | 0.811720 | 6.078878e-51 | -8.615850e-47 |
Msa0082550 | Msa0790230 | 0.968660 | 5.391374e-129 | -8.615850e-47 |
Msa0082550 | Msa0790240 | 0.879395 | 1.290817e-69 | -8.615850e-47 |
Msa0082550 | Msa0792510 | 0.839969 | 1.152807e-57 | -8.615850e-47 |
Msa0082550 | Msa0951720 | 0.805184 | 1.508723e-49 | -8.615850e-47 |
Msa0082550 | Msa1036390 | 0.822540 | 2.242831e-53 | -8.615850e-47 |
Msa0082550 | Msa1076680 | 0.817891 | 2.606549e-52 | -8.615850e-47 |
Msa0082550 | Msa1249940 | 0.809442 | 1.888660e-50 | -8.615850e-47 |
Msa0082550 | Msa1317710 | 0.804010 | 2.652250e-49 | -8.615850e-47 |
Msa0082550 | Msa1343340 | 0.818494 | 1.903862e-52 | -8.615850e-47 |
Msa0082550 | Msa1373950 | 0.841324 | 5.090312e-58 | -8.615850e-47 |
Msa0082550 | Msa1400460 | 0.884987 | 1.198369e-71 | -8.615850e-47 |
Msa0082550 | Msa1400470 | 0.997381 | 1.565084e-241 | -8.615850e-47 |
Msa0082550 | Msa1460310 | -0.814889 | 1.223890e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0082550 | MtrunA17_Chr1g0195991 | 98.990 | 99 | 1 | 0 | 1 | 99 | 1 | 99 | 3.54e-69 | 201 |
Msa0082550 | MtrunA17_Chr1g0195981 | 95.960 | 99 | 4 | 0 | 1 | 99 | 1 | 99 | 3.18e-68 | 199 |
Msa0082550 | MtrunA17_Chr7g0268711 | 76.531 | 98 | 23 | 0 | 1 | 98 | 1 | 98 | 2.74e-57 | 171 |
Msa0082550 | MtrunA17_Chr2g0286251 | 56.842 | 95 | 41 | 0 | 1 | 95 | 1 | 95 | 4.02e-39 | 125 |
Msa0082550 | MtrunA17_Chr1g0195971 | 52.041 | 98 | 47 | 0 | 1 | 98 | 1 | 98 | 4.82e-36 | 118 |
Msa0082550 | MtrunA17_Chr2g0286271 | 54.737 | 95 | 43 | 0 | 1 | 95 | 1 | 95 | 1.08e-35 | 117 |
Msa0082550 | MtrunA17_Chr7g0222541 | 51.042 | 96 | 46 | 1 | 1 | 95 | 30 | 125 | 5.05e-34 | 114 |
Msa0082550 | MtrunA17_Chr7g0222551 | 50.000 | 96 | 47 | 1 | 1 | 95 | 30 | 125 | 1.49e-33 | 112 |
Msa0082550 | MtrunA17_Chr7g0224091 | 51.042 | 96 | 46 | 1 | 1 | 95 | 22 | 117 | 3.31e-33 | 111 |
Msa0082550 | MtrunA17_Chr7g0222491 | 50.000 | 96 | 47 | 1 | 1 | 95 | 30 | 125 | 1.21e-32 | 110 |
Msa0082550 | MtrunA17_Chr4g0066791 | 50.000 | 96 | 47 | 1 | 1 | 95 | 1 | 96 | 5.84e-32 | 107 |
Msa0082550 | MtrunA17_Chr4g0066801 | 50.000 | 96 | 47 | 1 | 1 | 95 | 1 | 96 | 5.84e-32 | 107 |
Msa0082550 | MtrunA17_Chr4g0066811 | 50.000 | 96 | 47 | 1 | 1 | 95 | 1 | 96 | 5.84e-32 | 107 |
Msa0082550 | MtrunA17_Chr7g0268731 | 49.474 | 95 | 47 | 1 | 1 | 94 | 1 | 95 | 1.31e-30 | 104 |
Msa0082550 | MtrunA17_Chr7g0268721 | 48.421 | 95 | 48 | 1 | 1 | 94 | 1 | 95 | 8.76e-30 | 102 |
Msa0082550 | MtrunA17_Chr7g0268751 | 41.053 | 95 | 56 | 0 | 1 | 95 | 1 | 95 | 7.44e-26 | 92.4 |
Msa0082550 | MtrunA17_Chr1g0195951 | 38.298 | 94 | 58 | 0 | 1 | 94 | 1 | 94 | 4.42e-25 | 90.5 |
Msa0082550 | MtrunA17_Chr1g0195931 | 42.857 | 98 | 56 | 0 | 1 | 98 | 1 | 98 | 1.45e-21 | 81.6 |
Msa0082550 | MtrunA17_Chr2g0303741 | 39.796 | 98 | 55 | 1 | 2 | 95 | 40 | 137 | 3.25e-21 | 81.6 |
Msa0082550 | MtrunA17_Chr7g0268761 | 40.426 | 94 | 56 | 0 | 1 | 94 | 1 | 94 | 2.60e-20 | 78.2 |
Msa0082550 | MtrunA17_Chr2g0325001 | 38.542 | 96 | 52 | 2 | 4 | 95 | 41 | 133 | 1.18e-19 | 77.8 |
Msa0082550 | MtrunA17_Chr2g0282951 | 36.170 | 94 | 60 | 0 | 2 | 95 | 27 | 120 | 6.54e-19 | 75.5 |
Msa0082550 | MtrunA17_Chr3g0117411 | 35.789 | 95 | 61 | 0 | 1 | 95 | 18 | 112 | 1.03e-16 | 69.7 |
Msa0082550 | MtrunA17_Chr4g0040601 | 38.710 | 93 | 52 | 3 | 6 | 95 | 58 | 148 | 4.19e-16 | 68.9 |
Msa0082550 | MtrunA17_Chr3g0117391 | 34.043 | 94 | 62 | 0 | 1 | 94 | 21 | 114 | 4.94e-16 | 68.2 |
Msa0082550 | MtrunA17_Chr7g0228311 | 37.234 | 94 | 59 | 0 | 1 | 94 | 3 | 96 | 7.85e-16 | 67.0 |
Msa0082550 | MtrunA17_Chr1g0151231 | 36.170 | 94 | 58 | 1 | 3 | 94 | 48 | 141 | 5.78e-14 | 63.2 |
Msa0082550 | MtrunA17_Chr1g0182971 | 32.979 | 94 | 62 | 1 | 2 | 94 | 84 | 177 | 6.48e-14 | 63.9 |
Msa0082550 | MtrunA17_Chr3g0135811 | 35.484 | 93 | 54 | 3 | 3 | 94 | 23 | 110 | 3.11e-13 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0082550 | AT2G47880.1 | 72.449 | 98 | 27 | 0 | 1 | 98 | 1 | 98 | 2.04e-52 | 159 |
Msa0082550 | AT1G06830.1 | 73.196 | 97 | 26 | 0 | 1 | 97 | 1 | 97 | 8.45e-52 | 158 |
Msa0082550 | AT2G30540.1 | 66.327 | 98 | 33 | 0 | 1 | 98 | 1 | 98 | 2.72e-51 | 157 |
Msa0082550 | AT3G62960.1 | 70.408 | 98 | 29 | 0 | 1 | 98 | 1 | 98 | 8.50e-51 | 155 |
Msa0082550 | AT3G62950.1 | 51.042 | 96 | 46 | 1 | 1 | 95 | 1 | 96 | 2.05e-36 | 119 |
Msa0082550 | AT2G47870.1 | 54.167 | 96 | 43 | 1 | 1 | 95 | 1 | 96 | 6.63e-36 | 118 |
Msa0082550 | AT4G15670.1 | 50.526 | 95 | 47 | 0 | 1 | 95 | 1 | 95 | 3.04e-34 | 114 |
Msa0082550 | AT4G15680.1 | 51.579 | 95 | 46 | 0 | 1 | 95 | 1 | 95 | 1.06e-33 | 112 |
Msa0082550 | AT4G15660.1 | 49.485 | 97 | 49 | 0 | 1 | 97 | 1 | 97 | 1.11e-33 | 112 |
Msa0082550 | AT4G15700.1 | 51.579 | 95 | 46 | 0 | 1 | 95 | 1 | 95 | 1.21e-33 | 112 |
Msa0082550 | AT3G21460.1 | 53.684 | 95 | 44 | 0 | 1 | 95 | 1 | 95 | 1.32e-33 | 112 |
Msa0082550 | AT4G15690.1 | 50.526 | 95 | 47 | 0 | 1 | 95 | 1 | 95 | 5.36e-33 | 110 |
Msa0082550 | AT5G18600.1 | 46.316 | 95 | 51 | 0 | 1 | 95 | 1 | 95 | 8.06e-31 | 105 |
Msa0082550 | AT5G14070.1 | 42.718 | 103 | 51 | 2 | 1 | 95 | 31 | 133 | 8.83e-26 | 93.6 |
Msa0082550 | AT3G62930.1 | 41.053 | 95 | 56 | 0 | 1 | 95 | 1 | 95 | 1.57e-25 | 92.0 |
Msa0082550 | AT1G03020.1 | 43.158 | 95 | 54 | 0 | 1 | 95 | 1 | 95 | 8.46e-25 | 90.1 |
Msa0082550 | AT3G02000.1 | 42.424 | 99 | 51 | 1 | 3 | 95 | 31 | 129 | 2.42e-24 | 89.7 |
Msa0082550 | AT1G28480.1 | 36.735 | 98 | 58 | 2 | 2 | 95 | 33 | 130 | 2.38e-17 | 72.0 |
Msa0082550 | AT4G33040.1 | 39.175 | 97 | 53 | 2 | 3 | 94 | 41 | 136 | 3.13e-16 | 69.3 |
Msa0082550 | AT5G40370.1 | 35.106 | 94 | 61 | 0 | 1 | 94 | 3 | 96 | 1.06e-15 | 67.0 |
Msa0082550 | AT5G11930.1 | 41.935 | 93 | 44 | 4 | 3 | 94 | 57 | 140 | 5.30e-15 | 66.2 |
Msa0082550 | AT4G28730.1 | 31.915 | 94 | 63 | 1 | 2 | 94 | 71 | 164 | 1.23e-13 | 63.2 |
Msa0082550 | AT5G63030.1 | 37.805 | 82 | 51 | 0 | 13 | 94 | 31 | 112 | 3.67e-13 | 60.8 |
Msa0082550 | AT5G20500.1 | 29.670 | 91 | 64 | 0 | 4 | 94 | 35 | 125 | 2.84e-11 | 56.2 |
Msa0082550 | AT2G20270.1 | 31.915 | 94 | 63 | 1 | 2 | 94 | 76 | 169 | 2.86e-11 | 57.0 |
Msa0082550 | AT1G03850.2 | 34.884 | 86 | 52 | 2 | 10 | 95 | 62 | 143 | 4.69e-11 | 56.2 |
Find 35 sgRNAs with CRISPR-Local
Find 33 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGGGTACACTCCAATTTCT+TGG | 0.312373 | 1_2:-61386366 | None:intergenic |
TTCTCCATTTCTTTCCCATC+AGG | 0.358196 | 1_2:-61386412 | None:intergenic |
GGAGAAAGCTATAACAAAGT+TGG | 0.418322 | 1_2:+61386429 | Msa0082550:CDS |
AGATCCTGATGGGAAAGAAA+TGG | 0.430695 | 1_2:+61386408 | Msa0082550:CDS |
CCTGTCCCTGCAGTATTCAT+TGG | 0.431206 | 1_2:+61386463 | Msa0082550:CDS |
GTGTAGGGACATTACTTCAT+TGG | 0.438643 | 1_2:-61386506 | None:intergenic |
TGATCAAAGTAAGCTAAATT+CGG | 0.447173 | 1_2:-61386564 | None:intergenic |
GAGAAAGCTATAACAAAGTT+GGG | 0.448427 | 1_2:+61386430 | Msa0082550:CDS |
TTGTCAATTTCATGAATCAC+AGG | 0.463222 | 1_2:-61386385 | None:intergenic |
CTTCCTCCAATGAATACTGC+AGG | 0.488474 | 1_2:-61386469 | None:intergenic |
GATGAGGCTAGCTACAGAAA+AGG | 0.500022 | 1_2:+61386285 | Msa0082550:CDS |
GCATAGACAACAAGAGCTCT+TGG | 0.505172 | 1_2:-61386323 | None:intergenic |
TCATTGGAGGAAGGCTGGTG+GGG | 0.511910 | 1_2:+61386479 | Msa0082550:CDS |
TTCATTGGAGGAAGGCTGGT+GGG | 0.512409 | 1_2:+61386478 | Msa0082550:CDS |
CCAATGAATACTGCAGGGAC+AGG | 0.522380 | 1_2:-61386463 | None:intergenic |
GTTCACTTGTTCCACTACTC+AGG | 0.536048 | 1_2:+61386536 | Msa0082550:CDS |
AGTATTCATTGGAGGAAGGC+TGG | 0.536333 | 1_2:+61386474 | Msa0082550:CDS |
ATGAGGCTAGCTACAGAAAA+GGG | 0.537218 | 1_2:+61386286 | Msa0082550:CDS |
GTCCCTGCAGTATTCATTGG+AGG | 0.543693 | 1_2:+61386466 | Msa0082550:CDS |
GAAATTGACAAAGATCCTGA+TGG | 0.544778 | 1_2:+61386397 | Msa0082550:CDS |
AAAGTAAGCTAAATTCGGTA+TGG | 0.551896 | 1_2:-61386559 | None:intergenic |
TAGGGACATTACTTCATTGG+TGG | 0.552920 | 1_2:-61386503 | None:intergenic |
ATTCGGTATGGCCTGAGTAG+TGG | 0.556723 | 1_2:-61386547 | None:intergenic |
CAAGTGAACCACTTAGGTGT+AGG | 0.571843 | 1_2:-61386522 | None:intergenic |
ATTCATTGGAGGAAGGCTGG+TGG | 0.573512 | 1_2:+61386477 | Msa0082550:CDS |
AAGTGAACCACTTAGGTGTA+GGG | 0.580489 | 1_2:-61386521 | None:intergenic |
GTGGAACAAGTGAACCACTT+AGG | 0.593219 | 1_2:-61386528 | None:intergenic |
AGCTACAGAAAAGGGTGTGG+TGG | 0.593409 | 1_2:+61386294 | Msa0082550:CDS |
CTGCAGTATTCATTGGAGGA+AGG | 0.598971 | 1_2:+61386470 | Msa0082550:CDS |
GTAATGTCCCTACACCTAAG+TGG | 0.609456 | 1_2:+61386514 | Msa0082550:CDS |
AAATTGACAAAGATCCTGAT+GGG | 0.612548 | 1_2:+61386398 | Msa0082550:CDS |
TTCCTCCAATGAATACTGCA+GGG | 0.637919 | 1_2:-61386468 | None:intergenic |
GCTAGCTACAGAAAAGGGTG+TGG | 0.645043 | 1_2:+61386291 | Msa0082550:CDS |
TGTCAATTTCATGAATCACA+GGG | 0.646979 | 1_2:-61386384 | None:intergenic |
TTAAGATGGAGAAGGTGATG+AGG | 0.659848 | 1_2:+61386269 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AACATTTTGTTCCAAGAAAT+TGG | + | chr1_2:61386355-61386374 | Msa0082550:CDS | 25.0% |
TGTCAATTTCATGAATCACA+GGG | - | chr1_2:61386387-61386406 | None:intergenic | 30.0% | |
TTGTCAATTTCATGAATCAC+AGG | - | chr1_2:61386388-61386407 | None:intergenic | 30.0% | |
AAATTGACAAAGATCCTGAT+GGG | + | chr1_2:61386398-61386417 | Msa0082550:CDS | 30.0% | |
GAGAAAGCTATAACAAAGTT+GGG | + | chr1_2:61386430-61386449 | Msa0082550:CDS | 30.0% | |
GAAATTGACAAAGATCCTGA+TGG | + | chr1_2:61386397-61386416 | Msa0082550:CDS | 35.0% | |
GGAGAAAGCTATAACAAAGT+TGG | + | chr1_2:61386429-61386448 | Msa0082550:CDS | 35.0% | |
! | ATGAGGCTAGCTACAGAAAA+GGG | + | chr1_2:61386286-61386305 | Msa0082550:CDS | 40.0% |
AGATCCTGATGGGAAAGAAA+TGG | + | chr1_2:61386408-61386427 | Msa0082550:CDS | 40.0% | |
TTCTCCATTTCTTTCCCATC+AGG | - | chr1_2:61386415-61386434 | None:intergenic | 40.0% | |
TTCCTCCAATGAATACTGCA+GGG | - | chr1_2:61386471-61386490 | None:intergenic | 40.0% | |
TAGGGACATTACTTCATTGG+TGG | - | chr1_2:61386506-61386525 | None:intergenic | 40.0% | |
GTGTAGGGACATTACTTCAT+TGG | - | chr1_2:61386509-61386528 | None:intergenic | 40.0% | |
AAGTGAACCACTTAGGTGTA+GGG | - | chr1_2:61386524-61386543 | None:intergenic | 40.0% | |
! | GATGAGGCTAGCTACAGAAA+AGG | + | chr1_2:61386285-61386304 | Msa0082550:CDS | 45.0% |
GCATAGACAACAAGAGCTCT+TGG | - | chr1_2:61386326-61386345 | None:intergenic | 45.0% | |
CAGGGTACACTCCAATTTCT+TGG | - | chr1_2:61386369-61386388 | None:intergenic | 45.0% | |
CTTCCTCCAATGAATACTGC+AGG | - | chr1_2:61386472-61386491 | None:intergenic | 45.0% | |
CTGCAGTATTCATTGGAGGA+AGG | + | chr1_2:61386470-61386489 | Msa0082550:CDS | 45.0% | |
AGTATTCATTGGAGGAAGGC+TGG | + | chr1_2:61386474-61386493 | Msa0082550:CDS | 45.0% | |
GTAATGTCCCTACACCTAAG+TGG | + | chr1_2:61386514-61386533 | Msa0082550:CDS | 45.0% | |
CAAGTGAACCACTTAGGTGT+AGG | - | chr1_2:61386525-61386544 | None:intergenic | 45.0% | |
GTGGAACAAGTGAACCACTT+AGG | - | chr1_2:61386531-61386550 | None:intergenic | 45.0% | |
GTTCACTTGTTCCACTACTC+AGG | + | chr1_2:61386536-61386555 | Msa0082550:CDS | 45.0% | |
GCTAGCTACAGAAAAGGGTG+TGG | + | chr1_2:61386291-61386310 | Msa0082550:CDS | 50.0% | |
! | AGCTACAGAAAAGGGTGTGG+TGG | + | chr1_2:61386294-61386313 | Msa0082550:CDS | 50.0% |
CCAATGAATACTGCAGGGAC+AGG | - | chr1_2:61386466-61386485 | None:intergenic | 50.0% | |
CCTGTCCCTGCAGTATTCAT+TGG | + | chr1_2:61386463-61386482 | Msa0082550:CDS | 50.0% | |
GTCCCTGCAGTATTCATTGG+AGG | + | chr1_2:61386466-61386485 | Msa0082550:CDS | 50.0% | |
ATTCATTGGAGGAAGGCTGG+TGG | + | chr1_2:61386477-61386496 | Msa0082550:CDS | 50.0% | |
TTCATTGGAGGAAGGCTGGT+GGG | + | chr1_2:61386478-61386497 | Msa0082550:CDS | 50.0% | |
ATTCGGTATGGCCTGAGTAG+TGG | - | chr1_2:61386550-61386569 | None:intergenic | 50.0% | |
TCATTGGAGGAAGGCTGGTG+GGG | + | chr1_2:61386479-61386498 | Msa0082550:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 61386274 | 61386573 | 61386274 | ID=Msa0082550;Name=Msa0082550 |
chr1_2 | mRNA | 61386274 | 61386573 | 61386274 | ID=Msa0082550-mRNA-1;Parent=Msa0082550;Name=Msa0082550-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|-1|0|1|-1|1|1|0|99 |
chr1_2 | exon | 61386274 | 61386573 | 61386274 | ID=Msa0082550-mRNA-1:exon:20293;Parent=Msa0082550-mRNA-1 |
chr1_2 | CDS | 61386274 | 61386573 | 61386274 | ID=Msa0082550-mRNA-1:cds;Parent=Msa0082550-mRNA-1 |
Gene Sequence |
Protein sequence |