AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1295010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1295010 MtrunA17_Chr8g0372381 81.800 489 29 4 2 433 3 488 0.0 797
Msa1295010 MtrunA17_Chr2g0328781 48.837 473 185 3 8 423 20 492 7.93e-163 468
Msa1295010 MtrunA17_Chr4g0032441 47.845 464 183 4 10 415 7 469 5.88e-139 407
Msa1295010 MtrunA17_Chr3g0124811 42.151 465 209 5 12 419 22 483 4.09e-125 371
Msa1295010 MtrunA17_Chr8g0384741 41.791 469 213 5 12 423 73 538 1.44e-121 364
Msa1295010 MtrunA17_Chr1g0159811 42.752 407 173 5 12 361 20 423 8.86e-104 317
Msa1295010 MtrunA17_Chr3g0129271 78.238 193 24 2 143 318 30 221 7.56e-100 298
Msa1295010 MtrunA17_Chr4g0009161 88.785 107 11 1 143 248 115 221 5.35e-61 197
Msa1295010 MtrunA17_Chr2g0294411 23.467 473 268 11 7 404 87 540 3.80e-27 114
Msa1295010 MtrunA17_Chr2g0310091 28.617 311 180 11 101 377 221 523 4.44e-25 107
Msa1295010 MtrunA17_Chr4g0059221 28.481 316 189 9 101 384 225 535 1.63e-22 100
Msa1295010 MtrunA17_Chr8g0365221 29.524 315 187 11 101 384 222 532 1.80e-22 99.8
Msa1295010 MtrunA17_Chr4g0059521 28.846 260 152 7 155 385 232 487 9.36e-22 97.4
Msa1295010 MtrunA17_Chr3g0117861 28.254 315 191 9 101 384 223 533 3.17e-21 96.3
Msa1295010 MtrunA17_Chr3g0118081 28.013 307 185 9 109 383 213 515 1.82e-20 94.0
Msa1295010 MtrunA17_Chr6g0485301 27.885 312 188 9 105 384 187 493 7.52e-20 91.7
Msa1295010 MtrunA17_Chr3g0118121 27.687 307 186 9 109 383 183 485 7.90e-20 91.7
Msa1295010 MtrunA17_Chr8g0390651 26.857 350 204 14 85 399 170 502 1.85e-18 87.4
Msa1295010 MtrunA17_Chr8g0390631 26.984 315 193 9 102 384 176 485 3.88e-18 86.7
Msa1295010 MtrunA17_Chr6g0485311 28.662 314 187 12 102 383 182 490 1.27e-17 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1295010 AT4G36250.1 50.728 481 176 5 8 431 8 484 4.62e-175 499
Msa1295010 AT1G44170.1 42.431 469 210 4 7 418 11 476 1.32e-124 370
Msa1295010 AT1G44170.2 42.431 469 210 4 7 418 11 476 1.32e-124 370
Msa1295010 AT4G34240.4 43.460 474 206 6 5 420 57 526 3.35e-122 366
Msa1295010 AT4G34240.1 43.460 474 206 6 5 420 72 541 4.38e-122 366
Msa1295010 AT1G44170.3 46.429 364 164 4 81 418 55 413 2.27e-111 334
Msa1295010 AT4G34240.3 47.139 367 161 6 81 420 39 399 6.32e-105 317
Msa1295010 AT4G34240.2 44.781 297 130 2 5 270 72 365 4.33e-77 245
Msa1295010 AT3G66658.2 26.013 469 263 10 6 404 86 540 1.76e-31 127
Msa1295010 AT3G66658.1 26.013 469 263 10 6 404 86 540 1.83e-31 126
Msa1295010 AT1G74920.2 31.045 335 191 11 82 383 153 480 7.40e-27 112
Msa1295010 AT1G74920.1 31.045 335 191 11 82 383 158 485 8.77e-27 112
Msa1295010 AT1G79440.1 29.814 322 186 11 101 387 212 528 5.15e-25 107
Msa1295010 AT3G48170.1 28.909 339 197 12 82 385 158 487 8.31e-25 107
Msa1295010 AT1G23800.1 29.338 317 185 12 101 384 215 525 6.37e-23 101
Msa1295010 AT3G48000.1 27.937 315 192 9 101 384 219 529 5.34e-21 95.9
Msa1295010 AT3G24503.1 24.684 316 201 9 101 384 182 492 4.25e-18 87.0
Msa1295010 AT1G54100.2 24.000 325 200 11 101 389 178 491 9.86e-12 67.0
Msa1295010 AT1G54100.1 24.000 325 200 11 101 389 178 491 9.86e-12 67.0
Msa1295010 AT2G24270.2 24.299 321 209 8 91 384 212 525 2.78e-11 65.9
Msa1295010 AT2G24270.4 24.299 321 209 8 91 384 172 485 4.07e-11 65.1
Msa1295010 AT2G24270.3 24.299 321 209 8 91 384 172 485 4.67e-11 65.1
Msa1295010 AT2G24270.1 24.299 321 209 8 91 384 172 485 4.67e-11 65.1

Find 100 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCACCCTCAATGACCTTTA+TGG 0.167477 8_3:-52997749 None:intergenic
ATTGATTTGCAATACATTAT+AGG 0.167573 8_3:+53000952 Msa1295010:three_prime_UTR
GCAGATACTGCCCCAATTAT+TGG 0.191437 8_3:-52997634 None:intergenic
TTGGCATTGGATCCAATAAT+TGG 0.193325 8_3:+52997622 Msa1295010:CDS
TTTCTTGAAAGTTGCATCTT+TGG 0.200016 8_3:-53000033 None:intergenic
GGTGTTGGTCAGAGTGGTTT+TGG 0.239610 8_3:+53000683 Msa1295010:CDS
GCATAAATTGCAAGAGGTTT+TGG 0.241150 8_3:-53000005 None:intergenic
TTCTCATGAACTTCTTTAAT+AGG 0.291333 8_3:-52998953 None:intergenic
CCACCTAGCTCTAGAGTAAC+AGG 0.301770 8_3:-52998439 None:intergenic
ATATAATAACCTACCTTCTT+AGG 0.332339 8_3:-52996349 None:intergenic
AAAATCAGCACAAAACTCTT+TGG 0.349014 8_3:+52996303 Msa1295010:CDS
TATACAGGTGAATAAAATTC+AGG 0.355113 8_3:+52999956 Msa1295010:intron
AAGGCTCTTTACCAAGATCT+TGG 0.361299 8_3:+52995991 Msa1295010:CDS
ACACCAATGTTGTTCATTGT+AGG 0.390428 8_3:-52995838 None:intergenic
AAATGAAGATGCTATATCTA+AGG 0.397319 8_3:+52995972 Msa1295010:CDS
GCATACAGACTGAATTACTT+TGG 0.403077 8_3:+53000836 Msa1295010:CDS
CATGCTGGAGCTTGCTCTGA+TGG 0.406820 8_3:-52997679 None:intergenic
TGGCATTGGATCCAATAATT+GGG 0.411604 8_3:+52997623 Msa1295010:CDS
CAAGTTAGAATTCCTCAGAT+TGG 0.413705 8_3:+53000814 Msa1295010:CDS
TACCTTAAAATCTGAAGGAT+TGG 0.417721 8_3:-52998491 None:intergenic
TTATGTGATACACTACCATT+TGG 0.419289 8_3:+53000659 Msa1295010:CDS
CATATGGTGCTACATATGTT+AGG 0.420594 8_3:+53000869 Msa1295010:CDS
GATACCTTGGCTCAATTTCA+AGG 0.428430 8_3:-53000775 None:intergenic
GGTGGATCTAACAATATTGT+AGG 0.428757 8_3:-52999794 None:intergenic
AAGAATAGTAGGAGCAAAGT+GGG 0.429810 8_3:+52998760 Msa1295010:CDS
CTTAGACACTAATGCCATAA+AGG 0.430741 8_3:+52997735 Msa1295010:CDS
TTGAGACAATACTTCAAAAC+AGG 0.434011 8_3:+52995886 Msa1295010:CDS
GTGAAAGGCGTCTGAAAATA+CGG 0.443663 8_3:-53001020 None:intergenic
TAAGTAGTGAGGAAGGATAT+TGG 0.446928 8_3:-52997716 None:intergenic
GGAGAAGTACTCATCTGAAT+TGG 0.449394 8_3:+52998832 Msa1295010:CDS
ACACTATGCAGTGTTGGCAT+TGG 0.456843 8_3:+52997609 Msa1295010:intron
ATGGCAGTGAAAAGAATAGT+AGG 0.459596 8_3:+52998749 Msa1295010:CDS
CAGGATGCTTCCCAAGATCT+TGG 0.467321 8_3:-52996002 None:intergenic
TGTAGTGGACAAGCATGTAT+AGG 0.471434 8_3:+52998788 Msa1295010:CDS
ATCATGACGGAAGAAATCTT+TGG 0.471719 8_3:+52999830 Msa1295010:CDS
GAAAGATAATCAAATATAGC+AGG 0.472788 8_3:-52998469 None:intergenic
AGGCTCTTTACCAAGATCTT+GGG 0.476117 8_3:+52995992 Msa1295010:CDS
CTTTGGACTAGTGCTACATA+TGG 0.480977 8_3:+53000853 Msa1295010:CDS
ACACTACCATTTGGAGGTGT+TGG 0.484552 8_3:+53000668 Msa1295010:CDS
TCATCACGGTAAGCTTCAAC+AGG 0.489627 8_3:-52996021 None:intergenic
CTGATACTCACAGTGATCAC+TGG 0.503261 8_3:-52999863 None:intergenic
AAATAAGCACCACTTTGAGC+AGG 0.505372 8_3:+52999025 Msa1295010:CDS
TGTGATACACTACCATTTGG+AGG 0.510788 8_3:+53000662 Msa1295010:CDS
TTGAGCCAAGGTATCCTCCT+TGG 0.511711 8_3:+53000783 Msa1295010:CDS
ATGTTTGAAACCACGGTGAA+AGG 0.514160 8_3:-53001035 None:intergenic
AATCGATTATTTGCTTGTTG+AGG 0.518086 8_3:+52998811 Msa1295010:CDS
ATAATTGGGGCAGTATCTGC+TGG 0.528260 8_3:+52997637 Msa1295010:CDS
AAAATGGATGGCTCCTAAGA+AGG 0.533456 8_3:+52996336 Msa1295010:CDS
AAGTCCACGTGTTGCAAGCA+TGG 0.537038 8_3:+52998387 Msa1295010:CDS
TTGGCTCAATTTCAAGGCAA+AGG 0.542814 8_3:-53000769 None:intergenic
TGAACTACCTTAAAATCTGA+AGG 0.546236 8_3:-52998496 None:intergenic
GGTTAAGTAGAGCTTTGAGC+TGG 0.549576 8_3:-52995939 None:intergenic
CTCTGACCAACACCTCCAAA+TGG 0.550552 8_3:-53000674 None:intergenic
TAATGCCATAAAGGTCATTG+AGG 0.552612 8_3:+52997744 Msa1295010:CDS
TGGGACAAAATATTCTTCAC+TGG 0.554312 8_3:+52997805 Msa1295010:CDS
GCAAGAAATGAAGAGCATGC+TGG 0.556083 8_3:-52997694 None:intergenic
TTACTCCAAGGAGGATACCT+TGG 0.560424 8_3:-53000788 None:intergenic
ACTCCTGTTACTCTAGAGCT+AGG 0.562087 8_3:+52998436 Msa1295010:CDS
AATAAGCACCACTTTGAGCA+GGG 0.562266 8_3:+52999026 Msa1295010:CDS
TCATTGTAGGATTAATGTGA+TGG 0.562694 8_3:-52995825 None:intergenic
ACGGAGAAGCATTGTAGTTG+AGG 0.563285 8_3:-53000918 None:intergenic
TTTGGAGGTGTTGGTCAGAG+TGG 0.564157 8_3:+53000677 Msa1295010:CDS
AAAGAATAGTAGGAGCAAAG+TGG 0.572509 8_3:+52998759 Msa1295010:CDS
ATTGTATCAGAAACTTCCTC+AGG 0.573193 8_3:+53000058 Msa1295010:CDS
GTGAATGCATAAATTGCAAG+AGG 0.573538 8_3:-53000011 None:intergenic
ACAGTGATCACTGGAAGTAG+TGG 0.575288 8_3:-52999854 None:intergenic
GGCATTGGATCCAATAATTG+GGG 0.578716 8_3:+52997624 Msa1295010:CDS
GCAAAGTGGGGAGTCTGTAG+TGG 0.579608 8_3:+52998773 Msa1295010:CDS
AATGCCATAAAGGTCATTGA+GGG 0.579952 8_3:+52997745 Msa1295010:CDS
AATCCTACAATGAACAACAT+TGG 0.581075 8_3:+52995835 Msa1295010:exon
TGGATGGCTCCTAAGAAGGT+AGG 0.591144 8_3:+52996340 Msa1295010:CDS
TGTTGAAGCTTACCGTGATG+AGG 0.592972 8_3:+52996023 Msa1295010:CDS
GTATTGAATTTATAAACTCA+AGG 0.594021 8_3:+52999982 Msa1295010:CDS
CGAGAACATGTTTGAAACCA+CGG 0.597995 8_3:-53001042 None:intergenic
ATAAAGGTCATTGAGGGTGG+AGG 0.600689 8_3:+52997751 Msa1295010:CDS
AGCACCACTTTGAGCAGGGG+CGG 0.601563 8_3:+52999030 Msa1295010:CDS
GCCATAAAGGTCATTGAGGG+TGG 0.603042 8_3:+52997748 Msa1295010:CDS
TACAATGAACAACATTGGTG+TGG 0.607534 8_3:+52995840 Msa1295010:exon
TAGTGTCTAAGTAGTGAGGA+AGG 0.608264 8_3:-52997723 None:intergenic
GTCATGATTTCAGCATCTAG+TGG 0.618737 8_3:-52999815 None:intergenic
ATGACCATGCTTGCAACACG+TGG 0.620308 8_3:-52998391 None:intergenic
TGACAACATGATGGAGTCAA+AGG 0.620985 8_3:+52998986 Msa1295010:CDS
AAAGATAATCAAATATAGCA+GGG 0.622170 8_3:-52998468 None:intergenic
AGAATAGTAGGAGCAAAGTG+GGG 0.628018 8_3:+52998761 Msa1295010:CDS
AGATCCGCCCCTGCTCAAAG+TGG 0.629845 8_3:-52999034 None:intergenic
TTTGCCTTGAAATTGAGCCA+AGG 0.634603 8_3:+53000771 Msa1295010:CDS
TCAGTCTGTATGCCAATCTG+AGG 0.638610 8_3:-53000826 None:intergenic
AAATCAATAGATATTTGAGA+CGG 0.645734 8_3:-53000937 None:intergenic
TCTAACTTGAACTTACTCCA+AGG 0.647081 8_3:-53000800 None:intergenic
ATGATTTCAGCATCTAGTGG+TGG 0.655142 8_3:-52999812 None:intergenic
GCATTAGTGTCTAAGTAGTG+AGG 0.655550 8_3:-52997727 None:intergenic
ATTAAATATGACACTTCCTG+AGG 0.657142 8_3:-53000074 None:intergenic
AAATAATTATAACCTCATCA+CGG 0.660770 8_3:-52996035 None:intergenic
AAGGCGTCTGAAAATACGGT+GGG 0.663404 8_3:-53001016 None:intergenic
CCTGTTACTCTAGAGCTAGG+TGG 0.670414 8_3:+52998439 Msa1295010:CDS
ATAAGCACCACTTTGAGCAG+GGG 0.674486 8_3:+52999027 Msa1295010:CDS
ACTAGATGCTGAAATCATGA+CGG 0.689032 8_3:+52999817 Msa1295010:CDS
TGTCAAACGAGTATTTCCCA+TGG 0.692335 8_3:-53000712 None:intergenic
AACTTGAACTTACTCCAAGG+AGG 0.715059 8_3:-53000797 None:intergenic
AAAGGCGTCTGAAAATACGG+TGG 0.717505 8_3:-53001017 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAATATTAAA+GGG - chr8_3:52996396-52996415 None:intergenic 0.0%
!! GAAAATATAATAAAAAGAAA+AGG - chr8_3:52996184-52996203 None:intergenic 10.0%
!!! TATTTTTTTTTCTTCTTTTT+GGG - chr8_3:52996220-52996239 None:intergenic 10.0%
!!! CTCATTTTTATTTATATTTT+GGG - chr8_3:52996758-52996777 None:intergenic 10.0%
!!! ACTCATTTTTATTTATATTT+TGG - chr8_3:52996759-52996778 None:intergenic 10.0%
!!! GTATTAGTAATTTTTTTTAA+GGG - chr8_3:52997017-52997036 None:intergenic 10.0%
!!! AGTATTAGTAATTTTTTTTA+AGG - chr8_3:52997018-52997037 None:intergenic 10.0%
!! TATTAAATAATTGATGTATT+TGG - chr8_3:52997193-52997212 None:intergenic 10.0%
!!! TTATTTTTAAATAAATCCAA+TGG - chr8_3:52998175-52998194 None:intergenic 10.0%
!! ATGAAATTTATATTAAAACT+GGG - chr8_3:52999090-52999109 None:intergenic 10.0%
!! TATGAAATTTATATTAAAAC+TGG - chr8_3:52999091-52999110 None:intergenic 10.0%
!! ATATATATTCTTCAAATATT+TGG + chr8_3:52999349-52999368 Msa1295010:intron 10.0%
!!! TTATAATTATTTTAGGAGAA+GGG + chr8_3:52996046-52996065 Msa1295010:intron 15.0%
!!! GTATTTTTTTTTCTTCTTTT+TGG - chr8_3:52996221-52996240 None:intergenic 15.0%
!! AAAACATTAGTTACAATTTA+AGG + chr8_3:52996887-52996906 Msa1295010:intron 15.0%
!!! TTTTTTCATATAACAAAAAC+AGG - chr8_3:52997120-52997139 None:intergenic 15.0%
!!! TTACTAGTATATACATTTTA+AGG + chr8_3:52997885-52997904 Msa1295010:intron 15.0%
!!! TACTAGTATATACATTTTAA+GGG + chr8_3:52997886-52997905 Msa1295010:intron 15.0%
!!! TAAAAACTTTGACATTTTTA+TGG - chr8_3:52997969-52997988 None:intergenic 15.0%
!! TATTAGAAAATTAAAACTTC+AGG - chr8_3:52998892-52998911 None:intergenic 15.0%
!! TGAAATTTATATTAAAACTG+GGG - chr8_3:52999089-52999108 None:intergenic 15.0%
!!! TCTTGTTTAATTCAAAAAAA+TGG + chr8_3:52999230-52999249 Msa1295010:intron 15.0%
!! TGTATATTAGTAGAAAAATA+TGG - chr8_3:53000177-53000196 None:intergenic 15.0%
!!! AGTTGAAAATAATATTTTTG+AGG + chr8_3:53000409-53000428 Msa1295010:intron 15.0%
!!! AAAAACAGTGATTTTTATTA+TGG - chr8_3:53000588-53000607 None:intergenic 15.0%
!! AAATAATTATAACCTCATCA+CGG - chr8_3:52996038-52996057 None:intergenic 20.0%
!!! GATGAGGTTATAATTATTTT+AGG + chr8_3:52996039-52996058 Msa1295010:intron 20.0%
!!! GTTATAATTATTTTAGGAGA+AGG + chr8_3:52996045-52996064 Msa1295010:intron 20.0%
!! TAATAAAAAGAAAAGGGATA+TGG - chr8_3:52996177-52996196 None:intergenic 20.0%
!! TTATAATCAAATCAAAGTGA+AGG + chr8_3:52996417-52996436 Msa1295010:intron 20.0%
!! TATAATCAAATCAAAGTGAA+GGG + chr8_3:52996418-52996437 Msa1295010:intron 20.0%
!!! AACTATTTTCACTGTTATTA+TGG + chr8_3:52996574-52996593 Msa1295010:intron 20.0%
!! GAGTAAAAAAAAAAAAAGTG+GGG - chr8_3:52996729-52996748 None:intergenic 20.0%
!! GGAGTAAAAAAAAAAAAAGT+GGG - chr8_3:52996730-52996749 None:intergenic 20.0%
!! AGGAGTAAAAAAAAAAAAAG+TGG - chr8_3:52996731-52996750 None:intergenic 20.0%
!!! TTTTGTATGTTGTGAAAATT+AGG + chr8_3:52996919-52996938 Msa1295010:intron 20.0%
!!! ACAAAATTAGTATTTGTTAG+AGG + chr8_3:52997309-52997328 Msa1295010:intron 20.0%
!!! CAAAATTAGTATTTGTTAGA+GGG + chr8_3:52997310-52997329 Msa1295010:intron 20.0%
!!! TTCCCAAATTTTAATTTGAT+TGG + chr8_3:52998067-52998086 Msa1295010:intron 20.0%
!! AGCCAATCAAATTAAAATTT+GGG - chr8_3:52998072-52998091 None:intergenic 20.0%
!! AAAGATAATCAAATATAGCA+GGG - chr8_3:52998471-52998490 None:intergenic 20.0%
!!! AAGTTCATGAGAAAATTTTA+TGG + chr8_3:52998963-52998982 Msa1295010:CDS 20.0%
!! AAATTTATATTAAAACTGGG+GGG - chr8_3:52999087-52999106 None:intergenic 20.0%
!! GAAATTTATATTAAAACTGG+GGG - chr8_3:52999088-52999107 None:intergenic 20.0%
!! GCTTAGAATTATAAAAAGAA+GGG - chr8_3:52999203-52999222 None:intergenic 20.0%
!! TTAATTCAAAAAAATGGTTC+TGG + chr8_3:52999236-52999255 Msa1295010:intron 20.0%
!! TTTCAAAAATTGTACATTAC+CGG - chr8_3:52999322-52999341 None:intergenic 20.0%
!! AATTAATGTGTAGTGATTAT+AGG - chr8_3:52999510-52999529 None:intergenic 20.0%
!! AAACATAGAGTGAAAATAAA+AGG - chr8_3:52999585-52999604 None:intergenic 20.0%
!! GTATTGAATTTATAAACTCA+AGG + chr8_3:52999982-53000001 Msa1295010:CDS 20.0%
!! AAATCAATAGATATTTGAGA+CGG - chr8_3:53000940-53000959 None:intergenic 20.0%
!!! ATTGATTTGCAATACATTAT+AGG + chr8_3:53000952-53000971 Msa1295010:three_prime_UTR 20.0%
!! CATCTTCATTTTCATGAATT+AGG - chr8_3:52995963-52995982 None:intergenic 25.0%
! AAATGAAGATGCTATATCTA+AGG + chr8_3:52995972-52995991 Msa1295010:CDS 25.0%
! ATATAATAACCTACCTTCTT+AGG - chr8_3:52996352-52996371 None:intergenic 25.0%
! TAGACATAAGAAATTGATAC+AGG - chr8_3:52996458-52996477 None:intergenic 25.0%
! TAATTAACTGTTACATGTTC+TGG + chr8_3:52996492-52996511 Msa1295010:intron 25.0%
!!! TAGTTCTCATTTTTTCTTCT+TGG + chr8_3:52996670-52996689 Msa1295010:intron 25.0%
!! AAATTTTGTGACTTACTGAT+TGG - chr8_3:52996702-52996721 None:intergenic 25.0%
! AAAAAAAAAAAAAGTGGGGT+AGG - chr8_3:52996725-52996744 None:intergenic 25.0%
!!! TTATTTATATTTTGGGACGA+AGG - chr8_3:52996751-52996770 None:intergenic 25.0%
! TTCATATAACAAAAACAGGA+GGG - chr8_3:52997116-52997135 None:intergenic 25.0%
! TTTCATATAACAAAAACAGG+AGG - chr8_3:52997117-52997136 None:intergenic 25.0%
! AAAATAAAAAGCAATCACAG+TGG - chr8_3:52997339-52997358 None:intergenic 25.0%
! TTATTCCTGAAGTAATAGAA+AGG - chr8_3:52997441-52997460 None:intergenic 25.0%
! CTTTGATTATTGTCAAACTT+TGG + chr8_3:52997547-52997566 Msa1295010:intron 25.0%
! AAAGTTTAGTGCAAAGAATT+TGG - chr8_3:52997849-52997868 None:intergenic 25.0%
!! AATTCTTTGCACTAAACTTT+TGG + chr8_3:52997849-52997868 Msa1295010:intron 25.0%
!! CACTAGTTAAGGATTTTAAA+TGG - chr8_3:52998027-52998046 None:intergenic 25.0%
! GAGCCAATCAAATTAAAATT+TGG - chr8_3:52998073-52998092 None:intergenic 25.0%
! TAAATAAATCCAATGGTTAC+CGG - chr8_3:52998168-52998187 None:intergenic 25.0%
! GAAAGATAATCAAATATAGC+AGG - chr8_3:52998472-52998491 None:intergenic 25.0%
! GACTGTGATTTATAAAACTT+TGG + chr8_3:52998667-52998686 Msa1295010:intron 25.0%
!!! TAGTTTCATTTTTACGAAGA+TGG + chr8_3:52998730-52998749 Msa1295010:intron 25.0%
!! TAGTAACTTAGTAAGTCTTT+TGG + chr8_3:52998910-52998929 Msa1295010:intron 25.0%
! TTCTCATGAACTTCTTTAAT+AGG - chr8_3:52998956-52998975 None:intergenic 25.0%
! AATGCATTTGTGAAATATCA+TGG - chr8_3:52999118-52999137 None:intergenic 25.0%
! CGCTTAGAATTATAAAAAGA+AGG - chr8_3:52999204-52999223 None:intergenic 25.0%
!!! ATCTTGAATTTTTTTTCCAG+GGG - chr8_3:52999377-52999396 None:intergenic 25.0%
!!! GATCTTGAATTTTTTTTCCA+GGG - chr8_3:52999378-52999397 None:intergenic 25.0%
!! TATTTTCACTCTATGTTTTC+AGG + chr8_3:52999587-52999606 Msa1295010:intron 25.0%
!! TTTACTTCAGTTACTTTCAT+TGG - chr8_3:52999717-52999736 None:intergenic 25.0%
!! ATTTTATTCACCTGTATAGA+TGG - chr8_3:52999954-52999973 None:intergenic 25.0%
! TATACAGGTGAATAAAATTC+AGG + chr8_3:52999956-52999975 Msa1295010:intron 25.0%
! TCAAAGTAAGATGTATCAAA+CGG - chr8_3:53000154-53000173 None:intergenic 25.0%
! TCAACTGTATCATGTATTAT+GGG + chr8_3:53000329-53000348 Msa1295010:intron 25.0%
! TATTGTATTAAAAGTTGTCC+AGG - chr8_3:53000440-53000459 None:intergenic 25.0%
! CTTTATAGAGAAATGCTAAT+TGG - chr8_3:53000499-53000518 None:intergenic 25.0%
! TTATTATGGTAAACAACCAT+AGG - chr8_3:53000574-53000593 None:intergenic 25.0%
TCATTGTAGGATTAATGTGA+TGG - chr8_3:52995828-52995847 None:intergenic 30.0%
AATCCTACAATGAACAACAT+TGG + chr8_3:52995835-52995854 Msa1295010:exon 30.0%
TTGAGACAATACTTCAAAAC+AGG + chr8_3:52995886-52995905 Msa1295010:CDS 30.0%
!! GAAAAACAAGAAGTGTTACA+TGG + chr8_3:52995908-52995927 Msa1295010:CDS 30.0%
!! GAGTGATTACTTTTGTAGAT+TGG + chr8_3:52996271-52996290 Msa1295010:intron 30.0%
!! TGATTACTTTTGTAGATTGG+AGG + chr8_3:52996274-52996293 Msa1295010:intron 30.0%
!! GATTACTTTTGTAGATTGGA+GGG + chr8_3:52996275-52996294 Msa1295010:intron 30.0%
!! ATTACTTTTGTAGATTGGAG+GGG + chr8_3:52996276-52996295 Msa1295010:intron 30.0%
AAAATCAGCACAAAACTCTT+TGG + chr8_3:52996303-52996322 Msa1295010:CDS 30.0%
CATAAGAAATTGATACAGGT+TGG - chr8_3:52996454-52996473 None:intergenic 30.0%
!! TTTGTCCATACTTTTGTTGT+TGG + chr8_3:52996538-52996557 Msa1295010:intron 30.0%
TAAGTCCAACAACAAAAGTA+TGG - chr8_3:52996546-52996565 None:intergenic 30.0%
TGTATGTTGTGAAAATTAGG+TGG + chr8_3:52996922-52996941 Msa1295010:intron 30.0%
GTATGTTGTGAAAATTAGGT+GGG + chr8_3:52996923-52996942 Msa1295010:intron 30.0%
!! AATCACTTTAGAATATCGTG+CGG - chr8_3:52997042-52997061 None:intergenic 30.0%
GTAAACCTTTCTATTACTTC+AGG + chr8_3:52997433-52997452 Msa1295010:intron 30.0%
AACAACTACTGCTACAAAAA+TGG + chr8_3:52997785-52997804 Msa1295010:CDS 30.0%
ACAACTACTGCTACAAAAAT+GGG + chr8_3:52997786-52997805 Msa1295010:CDS 30.0%
ATCATTAAATCTCGATCCAA+CGG + chr8_3:52998214-52998233 Msa1295010:intron 30.0%
! ATTCATTTCCTTTTGCTTGA+TGG + chr8_3:52998292-52998311 Msa1295010:intron 30.0%
! TTCCAATCCTTCAGATTTTA+AGG + chr8_3:52998489-52998508 Msa1295010:CDS 30.0%
TACCTTAAAATCTGAAGGAT+TGG - chr8_3:52998494-52998513 None:intergenic 30.0%
TGAACTACCTTAAAATCTGA+AGG - chr8_3:52998499-52998518 None:intergenic 30.0%
TGTCACAAAATTGAAGATCA+AGG + chr8_3:52998700-52998719 Msa1295010:intron 30.0%
! AATCGATTATTTGCTTGTTG+AGG + chr8_3:52998811-52998830 Msa1295010:CDS 30.0%
! ATTTTATGGTGACAACATGA+TGG + chr8_3:52998977-52998996 Msa1295010:CDS 30.0%
!! ATTCAAAAAAATGGTTCTGG+TGG + chr8_3:52999239-52999258 Msa1295010:intron 30.0%
!! TTCAAAAAAATGGTTCTGGT+GGG + chr8_3:52999240-52999259 Msa1295010:intron 30.0%
!!! GGATCTTGAATTTTTTTTCC+AGG - chr8_3:52999379-52999398 None:intergenic 30.0%
TTTCTTGAAAGTTGCATCTT+TGG - chr8_3:53000036-53000055 None:intergenic 30.0%
ATTAAATATGACACTTCCTG+AGG - chr8_3:53000077-53000096 None:intergenic 30.0%
CAAAGTAAGATGTATCAAAC+GGG - chr8_3:53000153-53000172 None:intergenic 30.0%
GTCAACTGTATCATGTATTA+TGG + chr8_3:53000328-53000347 Msa1295010:intron 30.0%
ACAAAGTTGAATCTATCCTA+TGG + chr8_3:53000555-53000574 Msa1295010:intron 30.0%
TTATGTGATACACTACCATT+TGG + chr8_3:53000659-53000678 Msa1295010:CDS 30.0%
!!! TATGCAATACAGCTTTTTCA+TGG - chr8_3:53000745-53000764 None:intergenic 30.0%
ACACCAATGTTGTTCATTGT+AGG - chr8_3:52995841-52995860 None:intergenic 35.0%
TACAATGAACAACATTGGTG+TGG + chr8_3:52995840-52995859 Msa1295010:exon 35.0%
CTTTGGACTGTGTTGAAAAA+TGG + chr8_3:52996320-52996339 Msa1295010:CDS 35.0%
TCAAATCAAAGTGAAGGGAT+TGG + chr8_3:52996423-52996442 Msa1295010:intron 35.0%
CAAATCAAAGTGAAGGGATT+GGG + chr8_3:52996424-52996443 Msa1295010:intron 35.0%
AAAATGAGAACTACACCAAG+TGG - chr8_3:52996663-52996682 None:intergenic 35.0%
!! ATCACTTTAGAATATCGTGC+GGG - chr8_3:52997041-52997060 None:intergenic 35.0%
CAATTCTGCAGCATATATAG+TGG - chr8_3:52997262-52997281 None:intergenic 35.0%
TTTAATCTAACAGCAAGACG+AGG + chr8_3:52997503-52997522 Msa1295010:intron 35.0%
ACATTTACACTATGCAGTGT+TGG + chr8_3:52997603-52997622 Msa1295010:intron 35.0%
! TTGGCATTGGATCCAATAAT+TGG + chr8_3:52997622-52997641 Msa1295010:CDS 35.0%
! TGGCATTGGATCCAATAATT+GGG + chr8_3:52997623-52997642 Msa1295010:CDS 35.0%
TAAGTAGTGAGGAAGGATAT+TGG - chr8_3:52997719-52997738 None:intergenic 35.0%
CTTAGACACTAATGCCATAA+AGG + chr8_3:52997735-52997754 Msa1295010:CDS 35.0%
TAATGCCATAAAGGTCATTG+AGG + chr8_3:52997744-52997763 Msa1295010:CDS 35.0%
AATGCCATAAAGGTCATTGA+GGG + chr8_3:52997745-52997764 Msa1295010:CDS 35.0%
TGGGACAAAATATTCTTCAC+TGG + chr8_3:52997805-52997824 Msa1295010:CDS 35.0%
!! AGAATGCTTAAAGAGTGTTC+TGG - chr8_3:52997930-52997949 None:intergenic 35.0%
TAAAATCCTTAACTAGTGCC+TGG + chr8_3:52998029-52998048 Msa1295010:intron 35.0%
! GTTCTAGATTTATCTCTGCA+TGG + chr8_3:52998347-52998366 Msa1295010:intron 35.0%
!!! TTTTTTTGTCTCTACACCTG+TGG + chr8_3:52998585-52998604 Msa1295010:intron 35.0%
ATGGCAGTGAAAAGAATAGT+AGG + chr8_3:52998749-52998768 Msa1295010:CDS 35.0%
AAAGAATAGTAGGAGCAAAG+TGG + chr8_3:52998759-52998778 Msa1295010:CDS 35.0%
AAGAATAGTAGGAGCAAAGT+GGG + chr8_3:52998760-52998779 Msa1295010:CDS 35.0%
TACATTACCGGAAATAGTTG+TGG - chr8_3:52999310-52999329 None:intergenic 35.0%
TAGGAAGAGACTACTATTAC+AGG - chr8_3:52999491-52999510 None:intergenic 35.0%
CAGTTTCTTACAACTTTGTC+AGG + chr8_3:52999762-52999781 Msa1295010:intron 35.0%
GGTGGATCTAACAATATTGT+AGG - chr8_3:52999797-52999816 None:intergenic 35.0%
ACTAGATGCTGAAATCATGA+CGG + chr8_3:52999817-52999836 Msa1295010:CDS 35.0%
! ATCATGACGGAAGAAATCTT+TGG + chr8_3:52999830-52999849 Msa1295010:CDS 35.0%
!! ACTTAACTTGCCATCTATAC+AGG + chr8_3:52999941-52999960 Msa1295010:intron 35.0%
! GCATAAATTGCAAGAGGTTT+TGG - chr8_3:53000008-53000027 None:intergenic 35.0%
GTGAATGCATAAATTGCAAG+AGG - chr8_3:53000014-53000033 None:intergenic 35.0%
ATTGTATCAGAAACTTCCTC+AGG + chr8_3:53000058-53000077 Msa1295010:CDS 35.0%
! TGTATCAAACGGGTTCAAAA+TGG - chr8_3:53000143-53000162 None:intergenic 35.0%
CTGTATCATGTATTATGGGA+CGG + chr8_3:53000333-53000352 Msa1295010:intron 35.0%
!! AATATTTTTGAGGAGTTGCC+TGG + chr8_3:53000419-53000438 Msa1295010:intron 35.0%
TCTAACTTGAACTTACTCCA+AGG - chr8_3:53000803-53000822 None:intergenic 35.0%
CAAGTTAGAATTCCTCAGAT+TGG + chr8_3:53000814-53000833 Msa1295010:CDS 35.0%
GCATACAGACTGAATTACTT+TGG + chr8_3:53000836-53000855 Msa1295010:CDS 35.0%
!! CATATGGTGCTACATATGTT+AGG + chr8_3:53000869-53000888 Msa1295010:CDS 35.0%
AAGGCTCTTTACCAAGATCT+TGG + chr8_3:52995991-52996010 Msa1295010:CDS 40.0%
AGGCTCTTTACCAAGATCTT+GGG + chr8_3:52995992-52996011 Msa1295010:CDS 40.0%
GGACTGTGTTGAAAAATGGA+TGG + chr8_3:52996324-52996343 Msa1295010:CDS 40.0%
AAAATGGATGGCTCCTAAGA+AGG + chr8_3:52996336-52996355 Msa1295010:CDS 40.0%
TTTGCTGGGAAGAAAAGCAA+AGG - chr8_3:52996621-52996640 None:intergenic 40.0%
!! TTGCTTTTCTTCCCAGCAAA+AGG + chr8_3:52996621-52996640 Msa1295010:intron 40.0%
GTGGGAAGACTAATTAATGC+AGG + chr8_3:52996941-52996960 Msa1295010:intron 40.0%
TTCTGCAGCATATATAGTGG+CGG - chr8_3:52997259-52997278 None:intergenic 40.0%
! GGCATTGGATCCAATAATTG+GGG + chr8_3:52997624-52997643 Msa1295010:CDS 40.0%
TAGTGTCTAAGTAGTGAGGA+AGG - chr8_3:52997726-52997745 None:intergenic 40.0%
GCATTAGTGTCTAAGTAGTG+AGG - chr8_3:52997730-52997749 None:intergenic 40.0%
!! ATGCTTAAAGAGTGTTCTGG+AGG - chr8_3:52997927-52997946 None:intergenic 40.0%
GAAATGTTAATAGTGCCACC+AGG - chr8_3:52998050-52998069 None:intergenic 40.0%
CCACGTAGTTAACACATAAC+CGG - chr8_3:52998240-52998259 None:intergenic 40.0%
CGAAGAAACCATCAAGCAAA+AGG - chr8_3:52998303-52998322 None:intergenic 40.0%
! GCATGGTGTATGACATTTTC+AGG + chr8_3:52998364-52998383 Msa1295010:intron 40.0%
AATATAGTCCATGTGACCAC+AGG - chr8_3:52998604-52998623 None:intergenic 40.0%
AGAATAGTAGGAGCAAAGTG+GGG + chr8_3:52998761-52998780 Msa1295010:CDS 40.0%
!! TGTAGTGGACAAGCATGTAT+AGG + chr8_3:52998788-52998807 Msa1295010:CDS 40.0%
!! GGAGAAGTACTCATCTGAAT+TGG + chr8_3:52998832-52998851 Msa1295010:CDS 40.0%
! TGACAACATGATGGAGTCAA+AGG + chr8_3:52998986-52999005 Msa1295010:CDS 40.0%
AAATAAGCACCACTTTGAGC+AGG + chr8_3:52999025-52999044 Msa1295010:CDS 40.0%
AATAAGCACCACTTTGAGCA+GGG + chr8_3:52999026-52999045 Msa1295010:CDS 40.0%
!! TTATAAAAAGAAGGGCGCCA+GGG - chr8_3:52999195-52999214 None:intergenic 40.0%
!! ATTATAAAAAGAAGGGCGCC+AGG - chr8_3:52999196-52999215 None:intergenic 40.0%
ATTGCCATGATTCAGGCATA+GGG - chr8_3:52999280-52999299 None:intergenic 40.0%
TGGTAAGATTGCCATGATTC+AGG - chr8_3:52999287-52999306 None:intergenic 40.0%
CTTACCACCACAACTATTTC+CGG + chr8_3:52999300-52999319 Msa1295010:intron 40.0%
ATTACCGGAAATAGTTGTGG+TGG - chr8_3:52999307-52999326 None:intergenic 40.0%
CTATTGAAGCAGCAACTAGA+GGG - chr8_3:52999440-52999459 None:intergenic 40.0%
ACTATTGAAGCAGCAACTAG+AGG - chr8_3:52999441-52999460 None:intergenic 40.0%
! GTTGCTGCTTCAATAGTTCA+TGG + chr8_3:52999444-52999463 Msa1295010:intron 40.0%
ATGATTTCAGCATCTAGTGG+TGG - chr8_3:52999815-52999834 None:intergenic 40.0%
GTCATGATTTCAGCATCTAG+TGG - chr8_3:52999818-52999837 None:intergenic 40.0%
TATCATGTATTATGGGACGG+AGG + chr8_3:53000336-53000355 Msa1295010:intron 40.0%
ATCATGTATTATGGGACGGA+GGG + chr8_3:53000337-53000356 Msa1295010:intron 40.0%
TAAAGGATGGGAACTGGTTA+AGG + chr8_3:53000364-53000383 Msa1295010:intron 40.0%
TGTGATACACTACCATTTGG+AGG + chr8_3:53000662-53000681 Msa1295010:CDS 40.0%
TGTCAAACGAGTATTTCCCA+TGG - chr8_3:53000715-53000734 None:intergenic 40.0%
TTGGCTCAATTTCAAGGCAA+AGG - chr8_3:53000772-53000791 None:intergenic 40.0%
TTTGCCTTGAAATTGAGCCA+AGG + chr8_3:53000771-53000790 Msa1295010:CDS 40.0%
GATACCTTGGCTCAATTTCA+AGG - chr8_3:53000778-53000797 None:intergenic 40.0%
AACTTGAACTTACTCCAAGG+AGG - chr8_3:53000800-53000819 None:intergenic 40.0%
!! CTTTGGACTAGTGCTACATA+TGG + chr8_3:53000853-53000872 Msa1295010:CDS 40.0%
!! GTGAAAGGCGTCTGAAAATA+CGG - chr8_3:53001023-53001042 None:intergenic 40.0%
! ATGTTTGAAACCACGGTGAA+AGG - chr8_3:53001038-53001057 None:intergenic 40.0%
! CGAGAACATGTTTGAAACCA+CGG - chr8_3:53001045-53001064 None:intergenic 40.0%
!! GGTTAAGTAGAGCTTTGAGC+TGG - chr8_3:52995942-52995961 None:intergenic 45.0%
TCATCACGGTAAGCTTCAAC+AGG - chr8_3:52996024-52996043 None:intergenic 45.0%
TGTTGAAGCTTACCGTGATG+AGG + chr8_3:52996023-52996042 Msa1295010:CDS 45.0%
! GCAGTTACTCTCCTTTTGCT+GGG - chr8_3:52996635-52996654 None:intergenic 45.0%
AGAACTACACCAAGTGGTTC+TGG - chr8_3:52996657-52996676 None:intergenic 45.0%
!! ACACTATGCAGTGTTGGCAT+TGG + chr8_3:52997609-52997628 Msa1295010:intron 45.0%
GCAGATACTGCCCCAATTAT+TGG - chr8_3:52997637-52997656 None:intergenic 45.0%
ATAATTGGGGCAGTATCTGC+TGG + chr8_3:52997637-52997656 Msa1295010:CDS 45.0%
! GCAAGAAATGAAGAGCATGC+TGG - chr8_3:52997697-52997716 None:intergenic 45.0%
TCCACCCTCAATGACCTTTA+TGG - chr8_3:52997752-52997771 None:intergenic 45.0%
ATAAAGGTCATTGAGGGTGG+AGG + chr8_3:52997751-52997770 Msa1295010:CDS 45.0%
AATCCTTAACTAGTGCCTGG+TGG + chr8_3:52998032-52998051 Msa1295010:intron 45.0%
TTAAATCTCGATCCAACGGC+CGG + chr8_3:52998218-52998237 Msa1295010:intron 45.0%
CCGGTTATGTGTTAACTACG+TGG + chr8_3:52998237-52998256 Msa1295010:intron 45.0%
!! ACTCCTGTTACTCTAGAGCT+AGG + chr8_3:52998436-52998455 Msa1295010:CDS 45.0%
ATAAGCACCACTTTGAGCAG+GGG + chr8_3:52999027-52999046 Msa1295010:CDS 45.0%
GATTGCCATGATTCAGGCAT+AGG - chr8_3:52999281-52999300 None:intergenic 45.0%
CTTCAAATATTTGGCACCCC+TGG + chr8_3:52999358-52999377 Msa1295010:intron 45.0%
CAATCTCTCAAAGTCAGTGG+CGG - chr8_3:52999400-52999419 None:intergenic 45.0%
GCACAATCTCTCAAAGTCAG+TGG - chr8_3:52999403-52999422 None:intergenic 45.0%
GCTGCTTCAATAGTTCATGG+TGG + chr8_3:52999447-52999466 Msa1295010:intron 45.0%
ACAGTGATCACTGGAAGTAG+TGG - chr8_3:52999857-52999876 None:intergenic 45.0%
CTGATACTCACAGTGATCAC+TGG - chr8_3:52999866-52999885 None:intergenic 45.0%
! ACGGAGGGAGTATAAAGGAT+GGG + chr8_3:53000352-53000371 Msa1295010:intron 45.0%
GGAGTATAAAGGATGGGAAC+TGG + chr8_3:53000358-53000377 Msa1295010:intron 45.0%
! AGAAATGCTAATTGGTGCCC+CGG - chr8_3:53000491-53000510 None:intergenic 45.0%
! ACACTACCATTTGGAGGTGT+TGG + chr8_3:53000668-53000687 Msa1295010:CDS 45.0%
!! GTGTTGGTCAGAGTGGTTTT+GGG + chr8_3:53000684-53000703 Msa1295010:CDS 45.0%
TTACTCCAAGGAGGATACCT+TGG - chr8_3:53000791-53000810 None:intergenic 45.0%
TCAGTCTGTATGCCAATCTG+AGG - chr8_3:53000829-53000848 None:intergenic 45.0%
!! ACGGAGAAGCATTGTAGTTG+AGG - chr8_3:53000921-53000940 None:intergenic 45.0%
! AAGGCGTCTGAAAATACGGT+GGG - chr8_3:53001019-53001038 None:intergenic 45.0%
!! AAAGGCGTCTGAAAATACGG+TGG - chr8_3:53001020-53001039 None:intergenic 45.0%
!! AAAATATAATAAAAAGAAAA+GGG - chr8_3:52996183-52996202 None:intergenic 5.0%
!! AAAAAAAAAAAATATTAAAG+GGG - chr8_3:52996395-52996414 None:intergenic 5.0%
!! CAAAAAAAAAAAAATATTAA+AGG - chr8_3:52996397-52996416 None:intergenic 5.0%
CAGGATGCTTCCCAAGATCT+TGG - chr8_3:52996005-52996024 None:intergenic 50.0%
TGGATGGCTCCTAAGAAGGT+AGG + chr8_3:52996340-52996359 Msa1295010:CDS 50.0%
! GGCAGTTACTCTCCTTTTGC+TGG - chr8_3:52996636-52996655 None:intergenic 50.0%
GAGTAACTGCCAGAACCACT+TGG + chr8_3:52996645-52996664 Msa1295010:intron 50.0%
GCCATAAAGGTCATTGAGGG+TGG + chr8_3:52997748-52997767 Msa1295010:CDS 50.0%
!! TGCGTGGAATTGCTGACTCA+TGG - chr8_3:52998128-52998147 None:intergenic 50.0%
GTGCTAACTGCATGAATGCG+TGG - chr8_3:52998144-52998163 None:intergenic 50.0%
CATTCATGCAGTTAGCACGC+CGG + chr8_3:52998146-52998165 Msa1295010:intron 50.0%
GTTAACACATAACCGGCCGT+TGG - chr8_3:52998233-52998252 None:intergenic 50.0%
AAGTCCACGTGTTGCAAGCA+TGG + chr8_3:52998387-52998406 Msa1295010:CDS 50.0%
ATGACCATGCTTGCAACACG+TGG - chr8_3:52998394-52998413 None:intergenic 50.0%
!! CCACCTAGCTCTAGAGTAAC+AGG - chr8_3:52998442-52998461 None:intergenic 50.0%
!! CCTGTTACTCTAGAGCTAGG+TGG + chr8_3:52998439-52998458 Msa1295010:CDS 50.0%
CGTGACCACAATTGTCGTCA+CGG + chr8_3:52998553-52998572 Msa1295010:intron 50.0%
TCTCTACACCTGTGGTCACA+TGG + chr8_3:52998593-52998612 Msa1295010:intron 50.0%
! ATTAAAACTGGGGGGTGCAG+TGG - chr8_3:52999079-52999098 None:intergenic 50.0%
CAAATGCATTGCCGTTCCAG+CGG + chr8_3:52999128-52999147 Msa1295010:intron 50.0%
GCGACCTAAAATACACTGGG+GGG - chr8_3:52999163-52999182 None:intergenic 50.0%
CGCGACCTAAAATACACTGG+GGG - chr8_3:52999164-52999183 None:intergenic 50.0%
GCGCGACCTAAAATACACTG+GGG - chr8_3:52999165-52999184 None:intergenic 50.0%
CGCGCGACCTAAAATACACT+GGG - chr8_3:52999166-52999185 None:intergenic 50.0%
ACGCGCGACCTAAAATACAC+TGG - chr8_3:52999167-52999186 None:intergenic 50.0%
TGATTCAGGCATAGGGATGC+TGG - chr8_3:52999273-52999292 None:intergenic 50.0%
GCATCCCTATGCCTGAATCA+TGG + chr8_3:52999273-52999292 Msa1295010:intron 50.0%
! ATGGGACGGAGGGAGTATAA+AGG + chr8_3:53000347-53000366 Msa1295010:intron 50.0%
! GACGGAGGGAGTATAAAGGA+TGG + chr8_3:53000351-53000370 Msa1295010:intron 50.0%
TTGCTTCCTTAACCCGTGTC+CGG + chr8_3:53000469-53000488 Msa1295010:intron 50.0%
CTCTGACCAACACCTCCAAA+TGG - chr8_3:53000677-53000696 None:intergenic 50.0%
!! TTTGGAGGTGTTGGTCAGAG+TGG + chr8_3:53000677-53000696 Msa1295010:CDS 50.0%
!!! GGTGTTGGTCAGAGTGGTTT+TGG + chr8_3:53000683-53000702 Msa1295010:CDS 50.0%
!!! TTGGTCAGAGTGGTTTTGGG+AGG + chr8_3:53000687-53000706 Msa1295010:CDS 50.0%
!!! AGTGGTTTTGGGAGGTACCA+TGG + chr8_3:53000695-53000714 Msa1295010:CDS 50.0%
!!! GTGGTTTTGGGAGGTACCAT+GGG + chr8_3:53000696-53000715 Msa1295010:CDS 50.0%
! TTGAGCCAAGGTATCCTCCT+TGG + chr8_3:53000783-53000802 Msa1295010:CDS 50.0%
! TTTTCAGACGCCTTTCACCG+TGG + chr8_3:53001025-53001044 Msa1295010:three_prime_UTR 50.0%
! CATGCTGGAGCTTGCTCTGA+TGG - chr8_3:52997682-52997701 None:intergenic 55.0%
GTGCCACCAGGCACTAGTTA+AGG - chr8_3:52998038-52998057 None:intergenic 55.0%
GTTAGCACGCCGGTAACCAT+TGG + chr8_3:52998156-52998175 Msa1295010:intron 55.0%
TGACGCCGTGACGACAATTG+TGG - chr8_3:52998561-52998580 None:intergenic 55.0%
GCAAAGTGGGGAGTCTGTAG+TGG + chr8_3:52998773-52998792 Msa1295010:CDS 55.0%
! GGATCTCTTTAGAGACCCCC+AGG + chr8_3:52999051-52999070 Msa1295010:CDS 55.0%
! CGGTCCCCCCAGTGTATTTT+AGG + chr8_3:52999156-52999175 Msa1295010:intron 55.0%
TGCTTCCTTAACCCGTGTCC+GGG + chr8_3:53000470-53000489 Msa1295010:intron 55.0%
AGCACCACTTTGAGCAGGGG+CGG + chr8_3:52999030-52999049 Msa1295010:CDS 60.0%
AGATCCGCCCCTGCTCAAAG+TGG - chr8_3:52999037-52999056 None:intergenic 60.0%
TTGCCGTTCCAGCGGTCAAG+CGG + chr8_3:52999136-52999155 Msa1295010:intron 60.0%
GCTTCCTTAACCCGTGTCCG+GGG + chr8_3:53000471-53000490 Msa1295010:intron 60.0%
! CTAATTGGTGCCCCGGACAC+GGG - chr8_3:53000484-53000503 None:intergenic 60.0%
! GCTAATTGGTGCCCCGGACA+CGG - chr8_3:53000485-53000504 None:intergenic 60.0%
GGACCGCTTGACCGCTGGAA+CGG - chr8_3:52999142-52999161 None:intergenic 65.0%
TAGGTCGCGCGTTCGATCCC+TGG + chr8_3:52999175-52999194 Msa1295010:intron 65.0%
! TGGGGGGTGCAGTGGCACCT+GGG - chr8_3:52999071-52999090 None:intergenic 70.0%
! GGTGCCCCGGACACGGGTTA+AGG - chr8_3:53000478-53000497 None:intergenic 70.0%
! GGGGGTGCAGTGGCACCTGG+GGG - chr8_3:52999069-52999088 None:intergenic 75.0%
! GGGGGGTGCAGTGGCACCTG+GGG - chr8_3:52999070-52999089 None:intergenic 75.0%
! CTGGGGGGTGCAGTGGCACC+TGG - chr8_3:52999072-52999091 None:intergenic 75.0%
TGGGGGGACCGCTTGACCGC+TGG - chr8_3:52999147-52999166 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 52995786 53001143 52995786 ID=Msa1295010;Name=Msa1295010
chr8_3 mRNA 52995786 53001143 52995786 ID=Msa1295010-mRNA-1;Parent=Msa1295010;Name=Msa1295010-mRNA-1;_AED=0.12;_eAED=0.12;_QI=58|0.62|0.66|1|1|1|9|233|433
chr8_3 exon 52995786 52996044 52995786 ID=Msa1295010-mRNA-1:exon:15121;Parent=Msa1295010-mRNA-1
chr8_3 exon 52996289 52996361 52996289 ID=Msa1295010-mRNA-1:exon:15122;Parent=Msa1295010-mRNA-1
chr8_3 exon 52997620 52997826 52997620 ID=Msa1295010-mRNA-1:exon:15123;Parent=Msa1295010-mRNA-1
chr8_3 exon 52998386 52998510 52998386 ID=Msa1295010-mRNA-1:exon:15124;Parent=Msa1295010-mRNA-1
chr8_3 exon 52998749 52998853 52998749 ID=Msa1295010-mRNA-1:exon:15125;Parent=Msa1295010-mRNA-1
chr8_3 exon 52998948 52999072 52998948 ID=Msa1295010-mRNA-1:exon:15126;Parent=Msa1295010-mRNA-1
chr8_3 exon 52999784 52999874 52999784 ID=Msa1295010-mRNA-1:exon:15127;Parent=Msa1295010-mRNA-1
chr8_3 exon 52999963 53000082 52999963 ID=Msa1295010-mRNA-1:exon:15128;Parent=Msa1295010-mRNA-1
chr8_3 exon 53000656 53001143 53000656 ID=Msa1295010-mRNA-1:exon:15129;Parent=Msa1295010-mRNA-1
chr8_3 five_prime_UTR 52995786 52995843 52995786 ID=Msa1295010-mRNA-1:five_prime_utr;Parent=Msa1295010-mRNA-1
chr8_3 CDS 52995844 52996044 52995844 ID=Msa1295010-mRNA-1:cds;Parent=Msa1295010-mRNA-1
chr8_3 CDS 52996289 52996361 52996289 ID=Msa1295010-mRNA-1:cds;Parent=Msa1295010-mRNA-1
chr8_3 CDS 52997620 52997826 52997620 ID=Msa1295010-mRNA-1:cds;Parent=Msa1295010-mRNA-1
chr8_3 CDS 52998386 52998510 52998386 ID=Msa1295010-mRNA-1:cds;Parent=Msa1295010-mRNA-1
chr8_3 CDS 52998749 52998853 52998749 ID=Msa1295010-mRNA-1:cds;Parent=Msa1295010-mRNA-1
chr8_3 CDS 52998948 52999072 52998948 ID=Msa1295010-mRNA-1:cds;Parent=Msa1295010-mRNA-1
chr8_3 CDS 52999784 52999874 52999784 ID=Msa1295010-mRNA-1:cds;Parent=Msa1295010-mRNA-1
chr8_3 CDS 52999963 53000082 52999963 ID=Msa1295010-mRNA-1:cds;Parent=Msa1295010-mRNA-1
chr8_3 CDS 53000656 53000910 53000656 ID=Msa1295010-mRNA-1:cds;Parent=Msa1295010-mRNA-1
chr8_3 three_prime_UTR 53000911 53001143 53000911 ID=Msa1295010-mRNA-1:three_prime_utr;Parent=Msa1295010-mRNA-1
Gene Sequence

>Msa1295010

ATGAACAACATTGGTGTGGAAGTAGAAGAATCTGTAAGAGAGTTGAGACAATACTTCAAAACAGGAAAAACAAGAAGTGTTACATGGAGAAAAAACCAGCTCAAAGCTCTACTTAACCTAATTCATGAAAATGAAGATGCTATATCTAAGGCTCTTTACCAAGATCTTGGGAAGCATCCTGTTGAAGCTTACCGTGATGAGATTGGAGGGGTAGAAAAATCAGCACAAAACTCTTTGGACTGTGTTGAAAAATGGATGGCTCCTAAGAAGGTAGTGTTGGCATTGGATCCAATAATTGGGGCAGTATCTGCTGGAAATGTTGTAGTTATAAAACCATCAGAGCAAGCTCCAGCATGCTCTTCATTTCTTGCCAATATCCTTCCTCACTACTTAGACACTAATGCCATAAAGGTCATTGAGGGTGGAGGAGATGTCTGTCAACAACTACTGCTACAAAAATGGGACAAAATATTCTTCACTGGAAGTCCACGTGTTGCAAGCATGGTCATGTCTTCTGCTGCAAGAAATTTAACTCCTGTTACTCTAGAGCTAGGTGGAAAATGCCCTGCTATATTTGATTATCTTTCCAATCCTTCAGATTTTAAGATGGCAGTGAAAAGAATAGTAGGAGCAAAGTGGGGAGTCTGTAGTGGACAAGCATGTATAGGAATCGATTATTTGCTTGTTGAGGAGAAGTACTCATCTGAATTGATAGACCTATTAAAGAAGTTCATGAGAAAATTTTATGGTGACAACATGATGGAGTCAAAGGCACTCTCAAGAATAATAAATAAGCACCACTTTGAGCAGGGGCGGATCTCTTTAGAGACCCCCAGGTTTATTGAGCCTACAATATTGTTAGATCCACCACTAGATGCTGAAATCATGACGGAAGAAATCTTTGGTCCACTACTTCCAGTGATCACTGTGAATAAAATTCAGGAAAGTATTGAATTTATAAACTCAAGGCCAAAACCTCTTGCAATTTATGCATTCACCAAAGATGCAACTTTCAAGAAAAGATTGTATCAGAAACTTCCTCAGGAATTTTTATGTGATACACTACCATTTGGAGGTGTTGGTCAGAGTGGTTTTGGGAGGTACCATGGGAAATACTCGTTTGACACATTCAGCCATGAAAAAGCTGTATTGCATAGACACCTTTGCCTTGAAATTGAGCCAAGGTATCCTCCTTGGAGTAAGTTCAAGTTAGAATTCCTCAGATTGGCATACAGACTGAATTACTTTGGACTAGTGCTACATATGGTGCTACATATGTTAGGATTGAAAAAACACAACTAG

Protein sequence

>Msa1295010

MNNIGVEVEESVRELRQYFKTGKTRSVTWRKNQLKALLNLIHENEDAISKALYQDLGKHPVEAYRDEIGGVEKSAQNSLDCVEKWMAPKKVVLALDPIIGAVSAGNVVVIKPSEQAPACSSFLANILPHYLDTNAIKVIEGGGDVCQQLLLQKWDKIFFTGSPRVASMVMSSAARNLTPVTLELGGKCPAIFDYLSNPSDFKMAVKRIVGAKWGVCSGQACIGIDYLLVEEKYSSELIDLLKKFMRKFYGDNMMESKALSRIINKHHFEQGRISLETPRFIEPTILLDPPLDAEIMTEEIFGPLLPVITVNKIQESIEFINSRPKPLAIYAFTKDATFKKRLYQKLPQEFLCDTLPFGGVGQSGFGRYHGKYSFDTFSHEKAVLHRHLCLEIEPRYPPWSKFKLEFLRLAYRLNYFGLVLHMVLHMLGLKKHN*