Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790230 | XP_013469215.1 | 98.990 | 99 | 1 | 0 | 1 | 99 | 1 | 99 | 3.85e-65 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790230 | sp|O82255|GRC13_ARATH | 72.449 | 98 | 27 | 0 | 1 | 98 | 1 | 98 | 2.01e-51 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790230 | A0A072VPA8 | 98.990 | 99 | 1 | 0 | 1 | 99 | 1 | 99 | 1.84e-65 | 201 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0082540 | Msa0790230 | 0.872590 | 2.830107e-67 | -8.615850e-47 |
| Msa0082550 | Msa0790230 | 0.968660 | 5.391374e-129 | -8.615850e-47 |
| Msa0626230 | Msa0790230 | 0.835211 | 1.915343e-56 | -8.615850e-47 |
| Msa0672810 | Msa0790230 | 0.810816 | 9.549784e-51 | -8.615850e-47 |
| Msa0715310 | Msa0790230 | 0.820713 | 5.931319e-53 | -8.615850e-47 |
| Msa0722930 | Msa0790230 | 0.808319 | 3.284021e-50 | -8.615850e-47 |
| Msa0723140 | Msa0790230 | 0.823097 | 1.664105e-53 | -8.615850e-47 |
| Msa0757180 | Msa0790230 | 0.812574 | 3.959290e-51 | -8.615850e-47 |
| Msa0782340 | Msa0790230 | 0.804100 | 2.539618e-49 | -8.615850e-47 |
| Msa0790230 | Msa0790240 | 0.887823 | 1.017150e-72 | -8.615850e-47 |
| Msa0790230 | Msa0792510 | 0.847981 | 8.197017e-60 | -8.615850e-47 |
| Msa0790230 | Msa0819740 | 0.800530 | 1.380332e-48 | -8.615850e-47 |
| Msa0790230 | Msa0843280 | 0.812556 | 3.995888e-51 | -8.615850e-47 |
| Msa0790230 | Msa0870630 | 0.804666 | 1.935892e-49 | -8.615850e-47 |
| Msa0790230 | Msa0891010 | 0.804159 | 2.468991e-49 | -8.615850e-47 |
| Msa0790230 | Msa0951720 | 0.818444 | 1.953528e-52 | -8.615850e-47 |
| Msa0790230 | Msa1036390 | 0.831345 | 1.759884e-55 | -8.615850e-47 |
| Msa0790230 | Msa1046610 | 0.801650 | 8.147982e-49 | -8.615850e-47 |
| Msa0790230 | Msa1055430 | 0.802266 | 6.085516e-49 | -8.615850e-47 |
| Msa0790230 | Msa1076680 | 0.823960 | 1.045189e-53 | -8.615850e-47 |
| Msa0790230 | Msa1201990 | 0.803636 | 3.171042e-49 | -8.615850e-47 |
| Msa0790230 | Msa1221200 | -0.804948 | 1.690379e-49 | -8.615850e-47 |
| Msa0790230 | Msa1249940 | 0.806800 | 6.897135e-50 | -8.615850e-47 |
| Msa0790230 | Msa1317710 | 0.802655 | 5.060391e-49 | -8.615850e-47 |
| Msa0790230 | Msa1329990 | 0.811765 | 5.945173e-51 | -8.615850e-47 |
| Msa0790230 | Msa1343340 | 0.817979 | 2.489231e-52 | -8.615850e-47 |
| Msa0790230 | Msa1373950 | 0.846342 | 2.307032e-59 | -8.615850e-47 |
| Msa0790230 | Msa1400460 | 0.893885 | 4.140661e-75 | -8.615850e-47 |
| Msa0790230 | Msa1400470 | 0.971128 | 1.117695e-132 | -8.615850e-47 |
| Msa0790230 | Msa1447440 | 0.800665 | 1.295741e-48 | -8.615850e-47 |
| Msa0790230 | Msa1460310 | -0.820038 | 8.469638e-53 | -8.615850e-47 |
| Msa0790230 | Msa1465900 | 0.804401 | 2.198600e-49 | -8.615850e-47 |
| Msa0124110 | Msa0790230 | 0.812044 | 5.168017e-51 | -8.615850e-47 |
| Msa0138230 | Msa0790230 | 0.897602 | 1.199702e-76 | -8.615850e-47 |
| Msa0138240 | Msa0790230 | 0.973292 | 3.508100e-136 | -8.615850e-47 |
| Msa0153430 | Msa0790230 | 0.800027 | 1.747442e-48 | -8.615850e-47 |
| Msa0175630 | Msa0790230 | 0.994564 | 2.679587e-208 | -8.615850e-47 |
| Msa0175640 | Msa0790230 | 0.870844 | 1.073585e-66 | -8.615850e-47 |
| Msa0233190 | Msa0790230 | 0.803362 | 3.614393e-49 | -8.615850e-47 |
| Msa0365360 | Msa0790230 | 0.804397 | 2.202563e-49 | -8.615850e-47 |
| Msa0371540 | Msa0790230 | 0.808003 | 3.834377e-50 | -8.615850e-47 |
| Msa0389060 | Msa0790230 | 0.803567 | 3.278450e-49 | -8.615850e-47 |
| Msa0416800 | Msa0790230 | 0.836289 | 1.021189e-56 | -8.615850e-47 |
| Msa0419970 | Msa0790230 | 0.805824 | 1.107735e-49 | -8.615850e-47 |
| Msa0440110 | Msa0790230 | 0.804615 | 1.983908e-49 | -8.615850e-47 |
| Msa0463460 | Msa0790230 | 0.817548 | 3.115328e-52 | -8.615850e-47 |
| Msa0466060 | Msa0790230 | 0.804199 | 2.423082e-49 | -8.615850e-47 |
| Msa0253370 | Msa0790230 | 0.811808 | 5.815677e-51 | -8.615850e-47 |
| Msa0264940 | Msa0790230 | -0.818595 | 1.806360e-52 | -8.615850e-47 |
| Msa0302990 | Msa0790230 | -0.819884 | 9.185441e-53 | -8.615850e-47 |
| Msa0304990 | Msa0790230 | 0.802328 | 5.909649e-49 | -8.615850e-47 |
| Msa0330400 | Msa0790230 | 0.802238 | 6.168057e-49 | -8.615850e-47 |
| Msa0509020 | Msa0790230 | 0.801757 | 7.745575e-49 | -8.615850e-47 |
| Msa0517340 | Msa0790230 | 0.803323 | 3.681883e-49 | -8.615850e-47 |
| Msa0591780 | Msa0790230 | 0.806257 | 8.978980e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790230 | MtrunA17_Chr1g0195991 | 98.990 | 99 | 1 | 0 | 1 | 99 | 1 | 99 | 3.54e-69 | 201 |
| Msa0790230 | MtrunA17_Chr1g0195981 | 95.960 | 99 | 4 | 0 | 1 | 99 | 1 | 99 | 3.18e-68 | 199 |
| Msa0790230 | MtrunA17_Chr7g0268711 | 76.531 | 98 | 23 | 0 | 1 | 98 | 1 | 98 | 2.74e-57 | 171 |
| Msa0790230 | MtrunA17_Chr2g0286251 | 56.842 | 95 | 41 | 0 | 1 | 95 | 1 | 95 | 4.02e-39 | 125 |
| Msa0790230 | MtrunA17_Chr1g0195971 | 52.041 | 98 | 47 | 0 | 1 | 98 | 1 | 98 | 4.82e-36 | 118 |
| Msa0790230 | MtrunA17_Chr2g0286271 | 54.737 | 95 | 43 | 0 | 1 | 95 | 1 | 95 | 1.08e-35 | 117 |
| Msa0790230 | MtrunA17_Chr7g0222541 | 51.042 | 96 | 46 | 1 | 1 | 95 | 30 | 125 | 5.05e-34 | 114 |
| Msa0790230 | MtrunA17_Chr7g0222551 | 50.000 | 96 | 47 | 1 | 1 | 95 | 30 | 125 | 1.49e-33 | 112 |
| Msa0790230 | MtrunA17_Chr7g0224091 | 51.042 | 96 | 46 | 1 | 1 | 95 | 22 | 117 | 3.31e-33 | 111 |
| Msa0790230 | MtrunA17_Chr7g0222491 | 50.000 | 96 | 47 | 1 | 1 | 95 | 30 | 125 | 1.21e-32 | 110 |
| Msa0790230 | MtrunA17_Chr4g0066791 | 50.000 | 96 | 47 | 1 | 1 | 95 | 1 | 96 | 5.84e-32 | 107 |
| Msa0790230 | MtrunA17_Chr4g0066801 | 50.000 | 96 | 47 | 1 | 1 | 95 | 1 | 96 | 5.84e-32 | 107 |
| Msa0790230 | MtrunA17_Chr4g0066811 | 50.000 | 96 | 47 | 1 | 1 | 95 | 1 | 96 | 5.84e-32 | 107 |
| Msa0790230 | MtrunA17_Chr7g0268731 | 49.474 | 95 | 47 | 1 | 1 | 94 | 1 | 95 | 1.31e-30 | 104 |
| Msa0790230 | MtrunA17_Chr7g0268721 | 48.421 | 95 | 48 | 1 | 1 | 94 | 1 | 95 | 8.76e-30 | 102 |
| Msa0790230 | MtrunA17_Chr7g0268751 | 41.053 | 95 | 56 | 0 | 1 | 95 | 1 | 95 | 7.44e-26 | 92.4 |
| Msa0790230 | MtrunA17_Chr1g0195951 | 38.298 | 94 | 58 | 0 | 1 | 94 | 1 | 94 | 4.42e-25 | 90.5 |
| Msa0790230 | MtrunA17_Chr1g0195931 | 42.857 | 98 | 56 | 0 | 1 | 98 | 1 | 98 | 1.45e-21 | 81.6 |
| Msa0790230 | MtrunA17_Chr2g0303741 | 39.796 | 98 | 55 | 1 | 2 | 95 | 40 | 137 | 3.25e-21 | 81.6 |
| Msa0790230 | MtrunA17_Chr7g0268761 | 40.426 | 94 | 56 | 0 | 1 | 94 | 1 | 94 | 2.60e-20 | 78.2 |
| Msa0790230 | MtrunA17_Chr2g0325001 | 38.542 | 96 | 52 | 2 | 4 | 95 | 41 | 133 | 1.18e-19 | 77.8 |
| Msa0790230 | MtrunA17_Chr2g0282951 | 36.170 | 94 | 60 | 0 | 2 | 95 | 27 | 120 | 6.54e-19 | 75.5 |
| Msa0790230 | MtrunA17_Chr3g0117411 | 35.789 | 95 | 61 | 0 | 1 | 95 | 18 | 112 | 1.03e-16 | 69.7 |
| Msa0790230 | MtrunA17_Chr4g0040601 | 38.710 | 93 | 52 | 3 | 6 | 95 | 58 | 148 | 4.19e-16 | 68.9 |
| Msa0790230 | MtrunA17_Chr3g0117391 | 34.043 | 94 | 62 | 0 | 1 | 94 | 21 | 114 | 4.94e-16 | 68.2 |
| Msa0790230 | MtrunA17_Chr7g0228311 | 37.234 | 94 | 59 | 0 | 1 | 94 | 3 | 96 | 7.85e-16 | 67.0 |
| Msa0790230 | MtrunA17_Chr1g0151231 | 36.170 | 94 | 58 | 1 | 3 | 94 | 48 | 141 | 5.78e-14 | 63.2 |
| Msa0790230 | MtrunA17_Chr1g0182971 | 32.979 | 94 | 62 | 1 | 2 | 94 | 84 | 177 | 6.48e-14 | 63.9 |
| Msa0790230 | MtrunA17_Chr3g0135811 | 35.484 | 93 | 54 | 3 | 3 | 94 | 23 | 110 | 3.11e-13 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790230 | AT2G47880.1 | 72.449 | 98 | 27 | 0 | 1 | 98 | 1 | 98 | 2.04e-52 | 159 |
| Msa0790230 | AT1G06830.1 | 73.196 | 97 | 26 | 0 | 1 | 97 | 1 | 97 | 8.45e-52 | 158 |
| Msa0790230 | AT2G30540.1 | 66.327 | 98 | 33 | 0 | 1 | 98 | 1 | 98 | 2.72e-51 | 157 |
| Msa0790230 | AT3G62960.1 | 70.408 | 98 | 29 | 0 | 1 | 98 | 1 | 98 | 8.50e-51 | 155 |
| Msa0790230 | AT3G62950.1 | 51.042 | 96 | 46 | 1 | 1 | 95 | 1 | 96 | 2.05e-36 | 119 |
| Msa0790230 | AT2G47870.1 | 54.167 | 96 | 43 | 1 | 1 | 95 | 1 | 96 | 6.63e-36 | 118 |
| Msa0790230 | AT4G15670.1 | 50.526 | 95 | 47 | 0 | 1 | 95 | 1 | 95 | 3.04e-34 | 114 |
| Msa0790230 | AT4G15680.1 | 51.579 | 95 | 46 | 0 | 1 | 95 | 1 | 95 | 1.06e-33 | 112 |
| Msa0790230 | AT4G15660.1 | 49.485 | 97 | 49 | 0 | 1 | 97 | 1 | 97 | 1.11e-33 | 112 |
| Msa0790230 | AT4G15700.1 | 51.579 | 95 | 46 | 0 | 1 | 95 | 1 | 95 | 1.21e-33 | 112 |
| Msa0790230 | AT3G21460.1 | 53.684 | 95 | 44 | 0 | 1 | 95 | 1 | 95 | 1.32e-33 | 112 |
| Msa0790230 | AT4G15690.1 | 50.526 | 95 | 47 | 0 | 1 | 95 | 1 | 95 | 5.36e-33 | 110 |
| Msa0790230 | AT5G18600.1 | 46.316 | 95 | 51 | 0 | 1 | 95 | 1 | 95 | 8.06e-31 | 105 |
| Msa0790230 | AT5G14070.1 | 42.718 | 103 | 51 | 2 | 1 | 95 | 31 | 133 | 8.83e-26 | 93.6 |
| Msa0790230 | AT3G62930.1 | 41.053 | 95 | 56 | 0 | 1 | 95 | 1 | 95 | 1.57e-25 | 92.0 |
| Msa0790230 | AT1G03020.1 | 43.158 | 95 | 54 | 0 | 1 | 95 | 1 | 95 | 8.46e-25 | 90.1 |
| Msa0790230 | AT3G02000.1 | 42.424 | 99 | 51 | 1 | 3 | 95 | 31 | 129 | 2.42e-24 | 89.7 |
| Msa0790230 | AT1G28480.1 | 36.735 | 98 | 58 | 2 | 2 | 95 | 33 | 130 | 2.38e-17 | 72.0 |
| Msa0790230 | AT4G33040.1 | 39.175 | 97 | 53 | 2 | 3 | 94 | 41 | 136 | 3.13e-16 | 69.3 |
| Msa0790230 | AT5G40370.1 | 35.106 | 94 | 61 | 0 | 1 | 94 | 3 | 96 | 1.06e-15 | 67.0 |
| Msa0790230 | AT5G11930.1 | 41.935 | 93 | 44 | 4 | 3 | 94 | 57 | 140 | 5.30e-15 | 66.2 |
| Msa0790230 | AT4G28730.1 | 31.915 | 94 | 63 | 1 | 2 | 94 | 71 | 164 | 1.23e-13 | 63.2 |
| Msa0790230 | AT5G63030.1 | 37.805 | 82 | 51 | 0 | 13 | 94 | 31 | 112 | 3.67e-13 | 60.8 |
| Msa0790230 | AT5G20500.1 | 29.670 | 91 | 64 | 0 | 4 | 94 | 35 | 125 | 2.84e-11 | 56.2 |
| Msa0790230 | AT2G20270.1 | 31.915 | 94 | 63 | 1 | 2 | 94 | 76 | 169 | 2.86e-11 | 57.0 |
| Msa0790230 | AT1G03850.2 | 34.884 | 86 | 52 | 2 | 10 | 95 | 62 | 143 | 4.69e-11 | 56.2 |
Find 35 sgRNAs with CRISPR-Local
Find 33 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGGTACACTCCAATTTCT+TGG | 0.312373 | 5_3:+939690 | None:intergenic |
| TTCTCCATTTCTTTCCCATC+AGG | 0.358196 | 5_3:+939644 | None:intergenic |
| GGAGAAAGCTATAACAAAGT+TGG | 0.418322 | 5_3:-939627 | Msa0790230:CDS |
| AGATCCTGATGGGAAAGAAA+TGG | 0.430695 | 5_3:-939648 | Msa0790230:CDS |
| CCTGTCCCTGCAGTATTCAT+TGG | 0.431206 | 5_3:-939593 | Msa0790230:CDS |
| GTGTAGGGACATTACTTCAT+TGG | 0.438643 | 5_3:+939550 | None:intergenic |
| TGATCAAAGTAAGCTAAATT+CGG | 0.447173 | 5_3:+939492 | None:intergenic |
| GAGAAAGCTATAACAAAGTT+GGG | 0.448427 | 5_3:-939626 | Msa0790230:CDS |
| TTGTCAATTTCATGAATCAC+AGG | 0.463222 | 5_3:+939671 | None:intergenic |
| CTTCCTCCAATGAATACTGC+AGG | 0.488474 | 5_3:+939587 | None:intergenic |
| GATGAGGCTAGCTACAGAAA+AGG | 0.500022 | 5_3:-939771 | Msa0790230:CDS |
| GCATAGACAACAAGAGCTCT+TGG | 0.505172 | 5_3:+939733 | None:intergenic |
| TCATTGGAGGAAGGCTGGTG+GGG | 0.511910 | 5_3:-939577 | Msa0790230:CDS |
| TTCATTGGAGGAAGGCTGGT+GGG | 0.512409 | 5_3:-939578 | Msa0790230:CDS |
| CCAATGAATACTGCAGGGAC+AGG | 0.522380 | 5_3:+939593 | None:intergenic |
| GTTCACTTGTTCCACTACTC+AGG | 0.536048 | 5_3:-939520 | Msa0790230:CDS |
| AGTATTCATTGGAGGAAGGC+TGG | 0.536333 | 5_3:-939582 | Msa0790230:CDS |
| ATGAGGCTAGCTACAGAAAA+GGG | 0.537218 | 5_3:-939770 | Msa0790230:CDS |
| GTCCCTGCAGTATTCATTGG+AGG | 0.543693 | 5_3:-939590 | Msa0790230:CDS |
| GAAATTGACAAAGATCCTGA+TGG | 0.544778 | 5_3:-939659 | Msa0790230:CDS |
| AAAGTAAGCTAAATTCGGTA+TGG | 0.551896 | 5_3:+939497 | None:intergenic |
| TAGGGACATTACTTCATTGG+TGG | 0.552920 | 5_3:+939553 | None:intergenic |
| ATTCGGTATGGCCTGAGTAG+TGG | 0.556723 | 5_3:+939509 | None:intergenic |
| CAAGTGAACCACTTAGGTGT+AGG | 0.571843 | 5_3:+939534 | None:intergenic |
| ATTCATTGGAGGAAGGCTGG+TGG | 0.573512 | 5_3:-939579 | Msa0790230:CDS |
| AAGTGAACCACTTAGGTGTA+GGG | 0.580489 | 5_3:+939535 | None:intergenic |
| GTGGAACAAGTGAACCACTT+AGG | 0.593219 | 5_3:+939528 | None:intergenic |
| AGCTACAGAAAAGGGTGTGG+TGG | 0.593409 | 5_3:-939762 | Msa0790230:CDS |
| CTGCAGTATTCATTGGAGGA+AGG | 0.598971 | 5_3:-939586 | Msa0790230:CDS |
| GTAATGTCCCTACACCTAAG+TGG | 0.609456 | 5_3:-939542 | Msa0790230:CDS |
| AAATTGACAAAGATCCTGAT+GGG | 0.612548 | 5_3:-939658 | Msa0790230:CDS |
| TTCCTCCAATGAATACTGCA+GGG | 0.637919 | 5_3:+939588 | None:intergenic |
| GCTAGCTACAGAAAAGGGTG+TGG | 0.645043 | 5_3:-939765 | Msa0790230:CDS |
| TGTCAATTTCATGAATCACA+GGG | 0.646979 | 5_3:+939672 | None:intergenic |
| TTAAGATGGAGAAGGTGATG+AGG | 0.659848 | 5_3:-939787 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATTTTGTTCCAAGAAAT+TGG | - | chr5_3:939586-939605 | Msa0790230:CDS | 25.0% |
| TGTCAATTTCATGAATCACA+GGG | + | chr5_3:939618-939637 | None:intergenic | 30.0% | |
| TTGTCAATTTCATGAATCAC+AGG | + | chr5_3:939619-939638 | None:intergenic | 30.0% | |
| AAATTGACAAAGATCCTGAT+GGG | - | chr5_3:939629-939648 | Msa0790230:CDS | 30.0% | |
| GAGAAAGCTATAACAAAGTT+GGG | - | chr5_3:939661-939680 | Msa0790230:CDS | 30.0% | |
| GAAATTGACAAAGATCCTGA+TGG | - | chr5_3:939628-939647 | Msa0790230:CDS | 35.0% | |
| GGAGAAAGCTATAACAAAGT+TGG | - | chr5_3:939660-939679 | Msa0790230:CDS | 35.0% | |
| ! | ATGAGGCTAGCTACAGAAAA+GGG | - | chr5_3:939517-939536 | Msa0790230:CDS | 40.0% |
| AGATCCTGATGGGAAAGAAA+TGG | - | chr5_3:939639-939658 | Msa0790230:CDS | 40.0% | |
| TTCTCCATTTCTTTCCCATC+AGG | + | chr5_3:939646-939665 | None:intergenic | 40.0% | |
| TTCCTCCAATGAATACTGCA+GGG | + | chr5_3:939702-939721 | None:intergenic | 40.0% | |
| TAGGGACATTACTTCATTGG+TGG | + | chr5_3:939737-939756 | None:intergenic | 40.0% | |
| GTGTAGGGACATTACTTCAT+TGG | + | chr5_3:939740-939759 | None:intergenic | 40.0% | |
| AAGTGAACCACTTAGGTGTA+GGG | + | chr5_3:939755-939774 | None:intergenic | 40.0% | |
| ! | GATGAGGCTAGCTACAGAAA+AGG | - | chr5_3:939516-939535 | Msa0790230:CDS | 45.0% |
| GCATAGACAACAAGAGCTCT+TGG | + | chr5_3:939557-939576 | None:intergenic | 45.0% | |
| CAGGGTACACTCCAATTTCT+TGG | + | chr5_3:939600-939619 | None:intergenic | 45.0% | |
| CTTCCTCCAATGAATACTGC+AGG | + | chr5_3:939703-939722 | None:intergenic | 45.0% | |
| CTGCAGTATTCATTGGAGGA+AGG | - | chr5_3:939701-939720 | Msa0790230:CDS | 45.0% | |
| AGTATTCATTGGAGGAAGGC+TGG | - | chr5_3:939705-939724 | Msa0790230:CDS | 45.0% | |
| GTAATGTCCCTACACCTAAG+TGG | - | chr5_3:939745-939764 | Msa0790230:CDS | 45.0% | |
| CAAGTGAACCACTTAGGTGT+AGG | + | chr5_3:939756-939775 | None:intergenic | 45.0% | |
| GTGGAACAAGTGAACCACTT+AGG | + | chr5_3:939762-939781 | None:intergenic | 45.0% | |
| GTTCACTTGTTCCACTACTC+AGG | - | chr5_3:939767-939786 | Msa0790230:CDS | 45.0% | |
| GCTAGCTACAGAAAAGGGTG+TGG | - | chr5_3:939522-939541 | Msa0790230:CDS | 50.0% | |
| ! | AGCTACAGAAAAGGGTGTGG+TGG | - | chr5_3:939525-939544 | Msa0790230:CDS | 50.0% |
| CCAATGAATACTGCAGGGAC+AGG | + | chr5_3:939697-939716 | None:intergenic | 50.0% | |
| CCTGTCCCTGCAGTATTCAT+TGG | - | chr5_3:939694-939713 | Msa0790230:CDS | 50.0% | |
| GTCCCTGCAGTATTCATTGG+AGG | - | chr5_3:939697-939716 | Msa0790230:CDS | 50.0% | |
| ATTCATTGGAGGAAGGCTGG+TGG | - | chr5_3:939708-939727 | Msa0790230:CDS | 50.0% | |
| TTCATTGGAGGAAGGCTGGT+GGG | - | chr5_3:939709-939728 | Msa0790230:CDS | 50.0% | |
| ATTCGGTATGGCCTGAGTAG+TGG | + | chr5_3:939781-939800 | None:intergenic | 50.0% | |
| TCATTGGAGGAAGGCTGGTG+GGG | - | chr5_3:939710-939729 | Msa0790230:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 939505 | 939804 | 939505 | ID=Msa0790230;Name=Msa0790230 |
| chr5_3 | mRNA | 939505 | 939804 | 939505 | ID=Msa0790230-mRNA-1;Parent=Msa0790230;Name=Msa0790230-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|-1|0|1|-1|1|1|0|99 |
| chr5_3 | exon | 939505 | 939804 | 939505 | ID=Msa0790230-mRNA-1:exon:342;Parent=Msa0790230-mRNA-1 |
| chr5_3 | CDS | 939505 | 939804 | 939505 | ID=Msa0790230-mRNA-1:cds;Parent=Msa0790230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
