Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0786540 | G7KD67 | 95.122 | 287 | 13 | 1 | 1 | 287 | 1 | 286 | 0.0 | 553 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018870 | Msa0786540 | 0.820912 | 5.339035e-53 | -8.615850e-47 |
| Msa0728830 | Msa0786540 | 0.872732 | 2.535732e-67 | -8.615850e-47 |
| Msa0786540 | Msa1028720 | 0.810304 | 1.231807e-50 | -8.615850e-47 |
| Msa0786540 | Msa1028780 | 0.802148 | 6.437815e-49 | -8.615850e-47 |
| Msa0786540 | Msa1298740 | 0.807266 | 5.496450e-50 | -8.615850e-47 |
| Msa0786540 | Msa1361090 | 0.808329 | 3.267347e-50 | -8.615850e-47 |
| Msa0147990 | Msa0786540 | 0.807148 | 5.822232e-50 | -8.615850e-47 |
| Msa0386390 | Msa0786540 | 0.800424 | 1.450986e-48 | -8.615850e-47 |
| Msa0479790 | Msa0786540 | 0.801077 | 1.067249e-48 | -8.615850e-47 |
| Msa0498320 | Msa0786540 | 0.810916 | 9.086202e-51 | -8.615850e-47 |
| Msa0574170 | Msa0786540 | 0.805326 | 1.409344e-49 | -8.615850e-47 |
| Msa0595780 | Msa0786540 | 0.818801 | 1.621516e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0786540 | MtrunA17_Chr5g0443231 | 95.122 | 287 | 13 | 1 | 1 | 287 | 1 | 286 | 0.0 | 553 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0786540 | AT1G06510.1 | 44.483 | 290 | 142 | 5 | 8 | 296 | 1 | 272 | 9.05e-73 | 226 |
Find 76 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACACGCGATTGGAATTTA+TGG | 0.179941 | 5_2:-72122472 | None:intergenic |
| TTTATTAGAGTTTATAAATA+TGG | 0.232154 | 5_2:+72122414 | Msa0786540:three_prime_UTR |
| TGTTGCCACCTGGAATTCTT+TGG | 0.287582 | 5_2:-72121920 | None:intergenic |
| TGCCGAATTTCATCGTATTA+AGG | 0.289250 | 5_2:-72121652 | None:intergenic |
| TTATACTGCATACGAAGATT+TGG | 0.322526 | 5_2:+72122512 | Msa0786540:three_prime_UTR |
| CTGCTGACTCCGATAATCTT+AGG | 0.339518 | 5_2:-72121040 | None:intergenic |
| GACCTTAATACGATGAAATT+CGG | 0.351240 | 5_2:+72121650 | Msa0786540:CDS |
| TAACCCACAATTACTTTATG+TGG | 0.353300 | 5_2:+72122284 | Msa0786540:three_prime_UTR |
| CTTTACCTCACTTAACTTTG+TGG | 0.355447 | 5_2:-72121201 | None:intergenic |
| CTTCTTATTGTCACGAATGA+AGG | 0.374651 | 5_2:-72119751 | None:intergenic |
| GGTACCCGTACCGTTGGTTC+TGG | 0.381969 | 5_2:-72119878 | None:intergenic |
| ATCCTCATACGAGGATTTCA+TGG | 0.401246 | 5_2:+72121808 | Msa0786540:CDS |
| AATAAAGCCACACTATTTGA+AGG | 0.404655 | 5_2:-72122397 | None:intergenic |
| TCAAGATATGCAAATTTCTT+CGG | 0.409039 | 5_2:+72121679 | Msa0786540:CDS |
| AAGAGAGACCAAAGAATTCC+AGG | 0.414130 | 5_2:+72121912 | Msa0786540:CDS |
| CATTTCCAGTGGCGGTGCTA+AGG | 0.416658 | 5_2:-72121754 | None:intergenic |
| ATTGAGGCTCCTAAGATTAT+CGG | 0.420622 | 5_2:+72121031 | Msa0786540:CDS |
| TTCCATTGTTTGTTGCCACC+TGG | 0.423410 | 5_2:-72121930 | None:intergenic |
| CTAGTTCAGTTTCAATCTCA+TGG | 0.423872 | 5_2:-72121850 | None:intergenic |
| ACAATTACTTTATGTGGGAA+TGG | 0.437899 | 5_2:+72122290 | Msa0786540:three_prime_UTR |
| AGCCACACTATTTGAAGGAC+TGG | 0.452225 | 5_2:-72122392 | None:intergenic |
| TTGAAAGAAAGTCAGCTAGT+TGG | 0.453383 | 5_2:+72121521 | Msa0786540:CDS |
| CAATTACTTTATGTGGGAAT+GGG | 0.453935 | 5_2:+72122291 | Msa0786540:three_prime_UTR |
| AGATCCCTTAGCACCGCCAC+TGG | 0.463050 | 5_2:+72121749 | Msa0786540:CDS |
| TTCCATGAAATCCTCGTATG+AGG | 0.468616 | 5_2:-72121810 | None:intergenic |
| GGATATTTCTGACAAGCTGC+TGG | 0.470813 | 5_2:-72121789 | None:intergenic |
| TTTGGAGCAACGATTCGAAC+GGG | 0.477054 | 5_2:-72121590 | None:intergenic |
| TGTCAATTCAAACACGCGAT+TGG | 0.483097 | 5_2:-72122481 | None:intergenic |
| ATTCCCACATAAAGTAATTG+TGG | 0.484526 | 5_2:-72122288 | None:intergenic |
| ATTTCCAGTGGCGGTGCTAA+GGG | 0.497416 | 5_2:-72121753 | None:intergenic |
| TTCCCACATAAAGTAATTGT+GGG | 0.500386 | 5_2:-72122287 | None:intergenic |
| TTCTCTGTCTCCGTATCATC+CGG | 0.503229 | 5_2:-72121719 | None:intergenic |
| TCAACAAAGCTTCTGCTGCC+AGG | 0.512283 | 5_2:+72122216 | Msa0786540:CDS |
| AGCGCAGCATAAGAAGCATA+TGG | 0.512440 | 5_2:-72119782 | None:intergenic |
| ATTAAGGTCAGAATCATCCT+TGG | 0.515417 | 5_2:-72121636 | None:intergenic |
| AGAGAATCCACCGGATGATA+CGG | 0.519020 | 5_2:+72121709 | Msa0786540:CDS |
| CGTTCGAATCGTTGCTCCAA+AGG | 0.522561 | 5_2:+72121592 | Msa0786540:CDS |
| GTTGTTACTCTAACACAGTT+CGG | 0.540442 | 5_2:-72119709 | None:intergenic |
| AACCCACAATTACTTTATGT+GGG | 0.546354 | 5_2:+72122285 | Msa0786540:three_prime_UTR |
| GCAAGAGAAGTTGTGAAGTG+AGG | 0.549036 | 5_2:+72119679 | None:intergenic |
| TTAAGGTCAGAATCATCCTT+GGG | 0.555811 | 5_2:-72121635 | None:intergenic |
| AGCAGCTATAAGCATGCAGA+AGG | 0.557276 | 5_2:+72121079 | Msa0786540:CDS |
| ATTTGAAGGACTGGGCCACT+AGG | 0.561495 | 5_2:-72122383 | None:intergenic |
| CAGCTATAAGCATGCAGAAG+GGG | 0.563154 | 5_2:+72121081 | Msa0786540:CDS |
| ATGTATTGATTTACTCCTAG+TGG | 0.569190 | 5_2:+72122368 | Msa0786540:three_prime_UTR |
| AGCTATAAGCATGCAGAAGG+GGG | 0.572769 | 5_2:+72121082 | Msa0786540:CDS |
| TTCCAGGTGGCAACAAACAA+TGG | 0.578575 | 5_2:+72121928 | Msa0786540:CDS |
| TCGAATCGTTGCTCCAAAGG+AGG | 0.581641 | 5_2:+72121595 | Msa0786540:CDS |
| TAATGCCATGGATGATCTCA+AGG | 0.581702 | 5_2:-72121955 | None:intergenic |
| GCAGCTATAAGCATGCAGAA+GGG | 0.583610 | 5_2:+72121080 | Msa0786540:CDS |
| ACCCGTACCGTTGGTTCTGG+TGG | 0.583899 | 5_2:-72119875 | None:intergenic |
| CAGCAAATAATGCTAGATTG+AGG | 0.584425 | 5_2:+72121015 | Msa0786540:intron |
| CAAGAGAAGTTGTGAAGTGA+GGG | 0.584455 | 5_2:+72119680 | None:intergenic |
| TGTACCTCTGTCTAATGCCA+TGG | 0.585756 | 5_2:-72121967 | None:intergenic |
| GATATTTCTGACAAGCTGCT+GGG | 0.593061 | 5_2:-72121788 | None:intergenic |
| GAACTCCTTGAGATCATCCA+TGG | 0.594424 | 5_2:+72121950 | Msa0786540:CDS |
| TGTGGGTTACAAGAAAATTG+TGG | 0.597901 | 5_2:-72122270 | None:intergenic |
| TGGAAATGTCACTATGAACA+TGG | 0.602651 | 5_2:+72121541 | Msa0786540:CDS |
| TGAAGGAACAGCCATGGTTG+TGG | 0.606756 | 5_2:-72119734 | None:intergenic |
| CACGAATGAAGGAACAGCCA+TGG | 0.611848 | 5_2:-72119740 | None:intergenic |
| CTTTGGAGCAACGATTCGAA+CGG | 0.612772 | 5_2:-72121591 | None:intergenic |
| TAACTGCTCTGTATTGATGA+TGG | 0.615686 | 5_2:-72119815 | None:intergenic |
| GCCACACTATTTGAAGGACT+GGG | 0.616233 | 5_2:-72122391 | None:intergenic |
| GCCCAGTCCTTCAAATAGTG+TGG | 0.621774 | 5_2:+72122390 | Msa0786540:three_prime_UTR |
| TCGCAGAATCAGAAGTGCCA+AGG | 0.622972 | 5_2:+72122158 | Msa0786540:intron |
| GCAGATACCACCAGAACCAA+CGG | 0.628810 | 5_2:+72119868 | Msa0786540:CDS |
| TCTGTCTCCGTATCATCCGG+TGG | 0.634245 | 5_2:-72121716 | None:intergenic |
| GGAAAGTCAAGAGAATCCAC+CGG | 0.644466 | 5_2:+72121700 | Msa0786540:CDS |
| AGTTCTAAAAGATTCTCCCA+AGG | 0.655268 | 5_2:+72121619 | Msa0786540:CDS |
| GTGCCAAGGAAGCAAAAGTG+AGG | 0.657708 | 5_2:+72122172 | Msa0786540:CDS |
| GCTTTCCACAAAGTTAAGTG+AGG | 0.676411 | 5_2:+72121196 | Msa0786540:CDS |
| AGTAACAACAGCCACAACCA+TGG | 0.679105 | 5_2:+72119723 | Msa0786540:CDS |
| GTCAGAAATATCCTCATACG+AGG | 0.693843 | 5_2:+72121799 | Msa0786540:CDS |
| TCATCCATGGCATTAGACAG+AGG | 0.707537 | 5_2:+72121963 | Msa0786540:CDS |
| GCTCATCAAGCAATTCAATG+CGG | 0.738396 | 5_2:-72121175 | None:intergenic |
| AGAGACCAAAGAATTCCAGG+TGG | 0.785770 | 5_2:+72121915 | Msa0786540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATAAATTCAAATTAACA+TGG | - | chr5_2:72120321-72120340 | None:intergenic | 10.0% |
| !!! | ATGTTAATTTGAATTTATAA+AGG | + | chr5_2:72120320-72120339 | Msa0786540:intron | 10.0% |
| !! | AATGAAAATTAAATATTGAA+TGG | + | chr5_2:72120371-72120390 | Msa0786540:intron | 10.0% |
| !! | AAGATATTAAAACTTATTTA+CGG | + | chr5_2:72120982-72121001 | Msa0786540:intron | 10.0% |
| !!! | TATGAAAATTAATTTTGATT+AGG | + | chr5_2:72122043-72122062 | Msa0786540:intron | 10.0% |
| !! | TTTATTAGAGTTTATAAATA+TGG | + | chr5_2:72122414-72122433 | Msa0786540:three_prime_UTR | 10.0% |
| !! | CCAAGTAAAAAAAAAAAAAA+AGG | - | chr5_2:72120001-72120020 | None:intergenic | 15.0% |
| !!! | CCTTTTTTTTTTTTTTTACT+TGG | + | chr5_2:72119998-72120017 | Msa0786540:intron | 15.0% |
| !!! | TAAACATTTTATCTTAAGTT+TGG | - | chr5_2:72120957-72120976 | None:intergenic | 15.0% |
| !!! | TAACAAAAATTAATTTGTTG+AGG | + | chr5_2:72121305-72121324 | Msa0786540:intron | 15.0% |
| !!! | TATCTAAAATTAAAACAACT+AGG | - | chr5_2:72122074-72122093 | None:intergenic | 15.0% |
| !! | AATAAGCAAGAATGAATAAT+GGG | - | chr5_2:72119902-72119921 | None:intergenic | 20.0% |
| !! | AAATAAGCAAGAATGAATAA+TGG | - | chr5_2:72119903-72119922 | None:intergenic | 20.0% |
| !!! | TTTTTACACAATTCAATGAT+GGG | - | chr5_2:72119973-72119992 | None:intergenic | 20.0% |
| !!! | TTTTTTACACAATTCAATGA+TGG | - | chr5_2:72119974-72119993 | None:intergenic | 20.0% |
| !! | TGAATTTATAAAGGTTCATA+AGG | + | chr5_2:72120329-72120348 | Msa0786540:intron | 20.0% |
| !!! | AGTTCTAATTATTTAGTATC+AGG | + | chr5_2:72120441-72120460 | Msa0786540:intron | 20.0% |
| !! | TTAATTTATTTCACCTTTGA+TGG | + | chr5_2:72120760-72120779 | Msa0786540:intron | 20.0% |
| !! | ATATTAAAACTTATTTACGG+TGG | + | chr5_2:72120985-72121004 | Msa0786540:intron | 20.0% |
| !! | ATATTACCTGAAAACAAAAT+AGG | - | chr5_2:72121499-72121518 | None:intergenic | 20.0% |
| !! | ATCTAAATCTACAAATGAAA+CGG | - | chr5_2:72122024-72122043 | None:intergenic | 20.0% |
| !!! | TTTAAGAGTATTCATATAAG+AGG | + | chr5_2:72122098-72122117 | Msa0786540:intron | 20.0% |
| !! | TTTTACACAATTCAATGATG+GGG | - | chr5_2:72119972-72119991 | None:intergenic | 25.0% |
| ! | ATTAAGCTGTTTATCCAAAT+AGG | + | chr5_2:72120247-72120266 | Msa0786540:intron | 25.0% |
| ! | TTAAGCTGTTTATCCAAATA+GGG | + | chr5_2:72120248-72120267 | Msa0786540:intron | 25.0% |
| !! | AAGTGCAATTTTATGCATAT+AGG | - | chr5_2:72120274-72120293 | None:intergenic | 25.0% |
| !!! | GTTGTTTTCATAAGTTAAAC+AGG | - | chr5_2:72120551-72120570 | None:intergenic | 25.0% |
| ! | TTTATGTTGTATGTCCAAAT+TGG | + | chr5_2:72120637-72120656 | Msa0786540:intron | 25.0% |
| ! | TTATGTTGTATGTCCAAATT+GGG | + | chr5_2:72120638-72120657 | Msa0786540:intron | 25.0% |
| ! | ATAGCATTTATTCACTAAGT+AGG | - | chr5_2:72120898-72120917 | None:intergenic | 25.0% |
| ! | TATGCTTGTACAAAGAAAAA+AGG | + | chr5_2:72121124-72121143 | Msa0786540:CDS | 25.0% |
| ! | TGATATCATTGTCATAATGA+TGG | - | chr5_2:72121282-72121301 | None:intergenic | 25.0% |
| ! | TAAAACGTCATACAGTATAT+GGG | + | chr5_2:72121434-72121453 | Msa0786540:intron | 25.0% |
| !!! | AAGAAACCTATTTTGTTTTC+AGG | + | chr5_2:72121490-72121509 | Msa0786540:intron | 25.0% |
| ! | TCAAGATATGCAAATTTCTT+CGG | + | chr5_2:72121679-72121698 | Msa0786540:CDS | 25.0% |
| !!! | AAATGTCTCAGTTTTAGTAT+TGG | + | chr5_2:72121883-72121902 | Msa0786540:CDS | 25.0% |
| TTTACACAATTCAATGATGG+GGG | - | chr5_2:72119971-72119990 | None:intergenic | 30.0% | |
| ACTGAGAGAATTTATGAACA+CGG | + | chr5_2:72120120-72120139 | Msa0786540:intron | 30.0% | |
| !!! | CATGTTTTGCTTTTTATAGC+TGG | - | chr5_2:72120421-72120440 | None:intergenic | 30.0% |
| GCTTTATGAATCTACATCTA+TGG | + | chr5_2:72120733-72120752 | Msa0786540:intron | 30.0% | |
| ! | TAGTGTCAGTTTGTTCAAAT+TGG | + | chr5_2:72121342-72121361 | Msa0786540:intron | 30.0% |
| CTAAAACGTCATACAGTATA+TGG | + | chr5_2:72121433-72121452 | Msa0786540:intron | 30.0% | |
| AAAACGTCATACAGTATATG+GGG | + | chr5_2:72121435-72121454 | Msa0786540:intron | 30.0% | |
| GACCTTAATACGATGAAATT+CGG | + | chr5_2:72121650-72121669 | Msa0786540:CDS | 30.0% | |
| !!! | TATGTTGTTTTCATTTCCAG+TGG | - | chr5_2:72121768-72121787 | None:intergenic | 30.0% |
| !! | AAGAGTATTCATATAAGAGG+CGG | + | chr5_2:72122101-72122120 | Msa0786540:intron | 30.0% |
| TAACCCACAATTACTTTATG+TGG | + | chr5_2:72122284-72122303 | Msa0786540:three_prime_UTR | 30.0% | |
| AACCCACAATTACTTTATGT+GGG | + | chr5_2:72122285-72122304 | Msa0786540:three_prime_UTR | 30.0% | |
| TTCCCACATAAAGTAATTGT+GGG | - | chr5_2:72122290-72122309 | None:intergenic | 30.0% | |
| ATTCCCACATAAAGTAATTG+TGG | - | chr5_2:72122291-72122310 | None:intergenic | 30.0% | |
| ACAATTACTTTATGTGGGAA+TGG | + | chr5_2:72122290-72122309 | Msa0786540:three_prime_UTR | 30.0% | |
| CAATTACTTTATGTGGGAAT+GGG | + | chr5_2:72122291-72122310 | Msa0786540:three_prime_UTR | 30.0% | |
| !! | ATGTATTGATTTACTCCTAG+TGG | + | chr5_2:72122368-72122387 | Msa0786540:three_prime_UTR | 30.0% |
| AATAAAGCCACACTATTTGA+AGG | - | chr5_2:72122400-72122419 | None:intergenic | 30.0% | |
| TTATACTGCATACGAAGATT+TGG | + | chr5_2:72122512-72122531 | Msa0786540:three_prime_UTR | 30.0% | |
| GTTGTTACTCTAACACAGTT+CGG | - | chr5_2:72119712-72119731 | None:intergenic | 35.0% | |
| CTTCTTATTGTCACGAATGA+AGG | - | chr5_2:72119754-72119773 | None:intergenic | 35.0% | |
| ! | TAACTGCTCTGTATTGATGA+TGG | - | chr5_2:72119818-72119837 | None:intergenic | 35.0% |
| AATACGCCTCTCAAGATTAT+GGG | + | chr5_2:72120037-72120056 | Msa0786540:intron | 35.0% | |
| TTATGCATATAGGCCCTATT+TGG | - | chr5_2:72120264-72120283 | None:intergenic | 35.0% | |
| TCTGACTAGTGCTTATTTGT+AGG | - | chr5_2:72120482-72120501 | None:intergenic | 35.0% | |
| AGTCAGATTGTGAGAGTTTA+TGG | + | chr5_2:72120495-72120514 | Msa0786540:intron | 35.0% | |
| TACATGAAACATGAATTGCG+TGG | + | chr5_2:72120694-72120713 | Msa0786540:intron | 35.0% | |
| AGGCTTATGATAGAACACTA+TGG | + | chr5_2:72120802-72120821 | Msa0786540:intron | 35.0% | |
| CAGCAAATAATGCTAGATTG+AGG | + | chr5_2:72121015-72121034 | Msa0786540:intron | 35.0% | |
| ATTGAGGCTCCTAAGATTAT+CGG | + | chr5_2:72121031-72121050 | Msa0786540:CDS | 35.0% | |
| !! | AAAAAAGGTGTTGCAAGCTT+TGG | + | chr5_2:72121139-72121158 | Msa0786540:CDS | 35.0% |
| CTTTACCTCACTTAACTTTG+TGG | - | chr5_2:72121204-72121223 | None:intergenic | 35.0% | |
| ATTTGATTGTCAAGCATGTC+TGG | - | chr5_2:72121395-72121414 | None:intergenic | 35.0% | |
| TTGAAAGAAAGTCAGCTAGT+TGG | + | chr5_2:72121521-72121540 | Msa0786540:CDS | 35.0% | |
| TGGAAATGTCACTATGAACA+TGG | + | chr5_2:72121541-72121560 | Msa0786540:CDS | 35.0% | |
| !!! | TCTTTTAGAACTTCCTCCTT+TGG | - | chr5_2:72121611-72121630 | None:intergenic | 35.0% |
| !! | AGTTCTAAAAGATTCTCCCA+AGG | + | chr5_2:72121619-72121638 | Msa0786540:CDS | 35.0% |
| TTAAGGTCAGAATCATCCTT+GGG | - | chr5_2:72121638-72121657 | None:intergenic | 35.0% | |
| ATTAAGGTCAGAATCATCCT+TGG | - | chr5_2:72121639-72121658 | None:intergenic | 35.0% | |
| TGCCGAATTTCATCGTATTA+AGG | - | chr5_2:72121655-72121674 | None:intergenic | 35.0% | |
| CTAGTTCAGTTTCAATCTCA+TGG | - | chr5_2:72121853-72121872 | None:intergenic | 35.0% | |
| ! | TGTGGGTTACAAGAAAATTG+TGG | - | chr5_2:72122273-72122292 | None:intergenic | 35.0% |
| AAACACGCGATTGGAATTTA+TGG | - | chr5_2:72122475-72122494 | None:intergenic | 35.0% | |
| ! | ATGATGGGGGTGACAATAAT+GGG | - | chr5_2:72119958-72119977 | None:intergenic | 40.0% |
| ! | AATGATGGGGGTGACAATAA+TGG | - | chr5_2:72119959-72119978 | None:intergenic | 40.0% |
| ! | CATAATCTTGAGAGGCGTAT+TGG | - | chr5_2:72120038-72120057 | None:intergenic | 40.0% |
| CAATACGCCTCTCAAGATTA+TGG | + | chr5_2:72120036-72120055 | Msa0786540:intron | 40.0% | |
| AACATGCCCATAATCTTGAG+AGG | - | chr5_2:72120046-72120065 | None:intergenic | 40.0% | |
| CTCAAGATTATGGGCATGTT+TGG | + | chr5_2:72120046-72120065 | Msa0786540:intron | 40.0% | |
| AAGTTAAACAGGAGAGCTTG+TGG | - | chr5_2:72120540-72120559 | None:intergenic | 40.0% | |
| TGAAGAGACTAGACCCAATT+TGG | - | chr5_2:72120654-72120673 | None:intergenic | 40.0% | |
| TTGGGTCTAGTCTCTTCAAT+AGG | + | chr5_2:72120656-72120675 | Msa0786540:intron | 40.0% | |
| ACTAAGTAGGTCTCCATCAA+AGG | - | chr5_2:72120776-72120795 | None:intergenic | 40.0% | |
| TTTGATGGAGACCTACTTAG+TGG | + | chr5_2:72120775-72120794 | Msa0786540:intron | 40.0% | |
| TTGATGGAGACCTACTTAGT+GGG | + | chr5_2:72120776-72120795 | Msa0786540:intron | 40.0% | |
| ! | TAAGCCTTATCCCACTAAGT+AGG | - | chr5_2:72120789-72120808 | None:intergenic | 40.0% |
| ! | AAGCTTTATCCCACTAAGTG+GGG | - | chr5_2:72120851-72120870 | None:intergenic | 40.0% |
| ! | CAAGCTTTATCCCACTAAGT+GGG | - | chr5_2:72120852-72120871 | None:intergenic | 40.0% |
| !! | TTGTTTCTGACCTTTGCTAG+AGG | + | chr5_2:72120922-72120941 | Msa0786540:intron | 40.0% |
| ! | TGTTTCTGACCTTTGCTAGA+GGG | + | chr5_2:72120923-72120942 | Msa0786540:intron | 40.0% |
| AGGGGGATGAAAATTATGCA+AGG | + | chr5_2:72121099-72121118 | Msa0786540:CDS | 40.0% | |
| GGGGGATGAAAATTATGCAA+GGG | + | chr5_2:72121100-72121119 | Msa0786540:CDS | 40.0% | |
| GCTCATCAAGCAATTCAATG+CGG | - | chr5_2:72121178-72121197 | None:intergenic | 40.0% | |
| GCTTTCCACAAAGTTAAGTG+AGG | + | chr5_2:72121196-72121215 | Msa0786540:CDS | 40.0% | |
| ATGATGAGGTAGTAGACACA+TGG | - | chr5_2:72121370-72121389 | None:intergenic | 40.0% | |
| CATACAGTATATGGGGACAA+AGG | + | chr5_2:72121442-72121461 | Msa0786540:intron | 40.0% | |
| !! | GTTGTTTTCATTTCCAGTGG+CGG | - | chr5_2:72121765-72121784 | None:intergenic | 40.0% |
| ! | GATATTTCTGACAAGCTGCT+GGG | - | chr5_2:72121791-72121810 | None:intergenic | 40.0% |
| GTCAGAAATATCCTCATACG+AGG | + | chr5_2:72121799-72121818 | Msa0786540:CDS | 40.0% | |
| ATCCTCATACGAGGATTTCA+TGG | + | chr5_2:72121808-72121827 | Msa0786540:CDS | 40.0% | |
| TTCCATGAAATCCTCGTATG+AGG | - | chr5_2:72121813-72121832 | None:intergenic | 40.0% | |
| AAGAGAGACCAAAGAATTCC+AGG | + | chr5_2:72121912-72121931 | Msa0786540:CDS | 40.0% | |
| TAATGCCATGGATGATCTCA+AGG | - | chr5_2:72121958-72121977 | None:intergenic | 40.0% | |
| !!! | GACTCAAGTTAGTTTTCACC+TGG | - | chr5_2:72122237-72122256 | None:intergenic | 40.0% |
| TGTCAATTCAAACACGCGAT+TGG | - | chr5_2:72122484-72122503 | None:intergenic | 40.0% | |
| AGTAACAACAGCCACAACCA+TGG | + | chr5_2:72119723-72119742 | Msa0786540:CDS | 45.0% | |
| ! | AGCGCAGCATAAGAAGCATA+TGG | - | chr5_2:72119785-72119804 | None:intergenic | 45.0% |
| GAGACCTACTTAGTGGGATA+AGG | + | chr5_2:72120782-72120801 | Msa0786540:intron | 45.0% | |
| ! | CCAAGCTTTATCCCACTAAG+TGG | - | chr5_2:72120853-72120872 | None:intergenic | 45.0% |
| CCACTTAGTGGGATAAAGCT+TGG | + | chr5_2:72120850-72120869 | Msa0786540:intron | 45.0% | |
| !! | CTGCTGACTCCGATAATCTT+AGG | - | chr5_2:72121043-72121062 | None:intergenic | 45.0% |
| AGCAGCTATAAGCATGCAGA+AGG | + | chr5_2:72121079-72121098 | Msa0786540:CDS | 45.0% | |
| GCAGCTATAAGCATGCAGAA+GGG | + | chr5_2:72121080-72121099 | Msa0786540:CDS | 45.0% | |
| CAGCTATAAGCATGCAGAAG+GGG | + | chr5_2:72121081-72121100 | Msa0786540:CDS | 45.0% | |
| AGCTATAAGCATGCAGAAGG+GGG | + | chr5_2:72121082-72121101 | Msa0786540:CDS | 45.0% | |
| AAGCATGTCTGGCAATGATG+AGG | - | chr5_2:72121384-72121403 | None:intergenic | 45.0% | |
| ! | TTTGGAGCAACGATTCGAAC+GGG | - | chr5_2:72121593-72121612 | None:intergenic | 45.0% |
| !! | CTTTGGAGCAACGATTCGAA+CGG | - | chr5_2:72121594-72121613 | None:intergenic | 45.0% |
| GGAAAGTCAAGAGAATCCAC+CGG | + | chr5_2:72121700-72121719 | Msa0786540:CDS | 45.0% | |
| AGAGAATCCACCGGATGATA+CGG | + | chr5_2:72121709-72121728 | Msa0786540:CDS | 45.0% | |
| TTCTCTGTCTCCGTATCATC+CGG | - | chr5_2:72121722-72121741 | None:intergenic | 45.0% | |
| ! | GGATATTTCTGACAAGCTGC+TGG | - | chr5_2:72121792-72121811 | None:intergenic | 45.0% |
| AGAGACCAAAGAATTCCAGG+TGG | + | chr5_2:72121915-72121934 | Msa0786540:CDS | 45.0% | |
| TGTTGCCACCTGGAATTCTT+TGG | - | chr5_2:72121923-72121942 | None:intergenic | 45.0% | |
| TTCCAGGTGGCAACAAACAA+TGG | + | chr5_2:72121928-72121947 | Msa0786540:CDS | 45.0% | |
| ! | TTCCATTGTTTGTTGCCACC+TGG | - | chr5_2:72121933-72121952 | None:intergenic | 45.0% |
| GAACTCCTTGAGATCATCCA+TGG | + | chr5_2:72121950-72121969 | Msa0786540:CDS | 45.0% | |
| TCATCCATGGCATTAGACAG+AGG | + | chr5_2:72121963-72121982 | Msa0786540:CDS | 45.0% | |
| TGTACCTCTGTCTAATGCCA+TGG | - | chr5_2:72121970-72121989 | None:intergenic | 45.0% | |
| !! | GATCCTCACTTTTGCTTCCT+TGG | - | chr5_2:72122178-72122197 | None:intergenic | 45.0% |
| GCCACACTATTTGAAGGACT+GGG | - | chr5_2:72122394-72122413 | None:intergenic | 45.0% | |
| AGCCACACTATTTGAAGGAC+TGG | - | chr5_2:72122395-72122414 | None:intergenic | 45.0% | |
| !!! | TTTATTTTTATTTAATCATT+TGG | + | chr5_2:72120165-72120184 | Msa0786540:intron | 5.0% |
| TGAAGGAACAGCCATGGTTG+TGG | - | chr5_2:72119737-72119756 | None:intergenic | 50.0% | |
| CACGAATGAAGGAACAGCCA+TGG | - | chr5_2:72119743-72119762 | None:intergenic | 50.0% | |
| GCAGATACCACCAGAACCAA+CGG | + | chr5_2:72119868-72119887 | Msa0786540:CDS | 50.0% | |
| TACCACCAGAACCAACGGTA+CGG | + | chr5_2:72119873-72119892 | Msa0786540:intron | 50.0% | |
| !! | ATAATGGGTACCCGTACCGT+TGG | - | chr5_2:72119887-72119906 | None:intergenic | 50.0% |
| ACTAAGTGGGGTCAGCTACA+TGG | - | chr5_2:72120839-72120858 | None:intergenic | 50.0% | |
| ATGTAGCTGACCCCACTTAG+TGG | + | chr5_2:72120838-72120857 | Msa0786540:intron | 50.0% | |
| TGTAGCTGACCCCACTTAGT+GGG | + | chr5_2:72120839-72120858 | Msa0786540:intron | 50.0% | |
| GACATGTCACCCTCTAGCAA+AGG | - | chr5_2:72120935-72120954 | None:intergenic | 50.0% | |
| CGTTCGAATCGTTGCTCCAA+AGG | + | chr5_2:72121592-72121611 | Msa0786540:CDS | 50.0% | |
| TCGAATCGTTGCTCCAAAGG+AGG | + | chr5_2:72121595-72121614 | Msa0786540:CDS | 50.0% | |
| ! | ATTTCCAGTGGCGGTGCTAA+GGG | - | chr5_2:72121756-72121775 | None:intergenic | 50.0% |
| TAAGAGGCGGAAAGTAACGC+AGG | + | chr5_2:72122114-72122133 | Msa0786540:intron | 50.0% | |
| AAGAGGCGGAAAGTAACGCA+GGG | + | chr5_2:72122115-72122134 | Msa0786540:intron | 50.0% | |
| !! | TCGCAGAATCAGAAGTGCCA+AGG | + | chr5_2:72122158-72122177 | Msa0786540:intron | 50.0% |
| GTGCCAAGGAAGCAAAAGTG+AGG | + | chr5_2:72122172-72122191 | Msa0786540:CDS | 50.0% | |
| TCAACAAAGCTTCTGCTGCC+AGG | + | chr5_2:72122216-72122235 | Msa0786540:CDS | 50.0% | |
| ATTTGAAGGACTGGGCCACT+AGG | - | chr5_2:72122386-72122405 | None:intergenic | 50.0% | |
| GCCCAGTCCTTCAAATAGTG+TGG | + | chr5_2:72122390-72122409 | Msa0786540:three_prime_UTR | 50.0% | |
| ACCACCAGAACCAACGGTAC+GGG | + | chr5_2:72119874-72119893 | Msa0786540:intron | 55.0% | |
| TCTGTCTCCGTATCATCCGG+TGG | - | chr5_2:72121719-72121738 | None:intergenic | 55.0% | |
| ! | CATTTCCAGTGGCGGTGCTA+AGG | - | chr5_2:72121757-72121776 | None:intergenic | 55.0% |
| !! | ACCCGTACCGTTGGTTCTGG+TGG | - | chr5_2:72119878-72119897 | None:intergenic | 60.0% |
| !! | GGTACCCGTACCGTTGGTTC+TGG | - | chr5_2:72119881-72119900 | None:intergenic | 60.0% |
| AGATCCCTTAGCACCGCCAC+TGG | + | chr5_2:72121749-72121768 | Msa0786540:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 72119682 | 72122549 | 72119682 | ID=Msa0786540;Name=Msa0786540 |
| chr5_2 | mRNA | 72119682 | 72122549 | 72119682 | ID=Msa0786540-mRNA-1;Parent=Msa0786540;Name=Msa0786540-mRNA-1;_AED=0.02;_eAED=0.02;_QI=21|0.66|0.75|1|1|1|4|308|316 |
| chr5_2 | exon | 72119682 | 72119889 | 72119682 | ID=Msa0786540-mRNA-1:exon:21840;Parent=Msa0786540-mRNA-1 |
| chr5_2 | exon | 72121018 | 72121217 | 72121018 | ID=Msa0786540-mRNA-1:exon:21841;Parent=Msa0786540-mRNA-1 |
| chr5_2 | exon | 72121512 | 72121997 | 72121512 | ID=Msa0786540-mRNA-1:exon:21842;Parent=Msa0786540-mRNA-1 |
| chr5_2 | exon | 72122164 | 72122549 | 72122164 | ID=Msa0786540-mRNA-1:exon:21843;Parent=Msa0786540-mRNA-1 |
| chr5_2 | five_prime_UTR | 72119682 | 72119702 | 72119682 | ID=Msa0786540-mRNA-1:five_prime_utr;Parent=Msa0786540-mRNA-1 |
| chr5_2 | CDS | 72119703 | 72119889 | 72119703 | ID=Msa0786540-mRNA-1:cds;Parent=Msa0786540-mRNA-1 |
| chr5_2 | CDS | 72121018 | 72121217 | 72121018 | ID=Msa0786540-mRNA-1:cds;Parent=Msa0786540-mRNA-1 |
| chr5_2 | CDS | 72121512 | 72121997 | 72121512 | ID=Msa0786540-mRNA-1:cds;Parent=Msa0786540-mRNA-1 |
| chr5_2 | CDS | 72122164 | 72122241 | 72122164 | ID=Msa0786540-mRNA-1:cds;Parent=Msa0786540-mRNA-1 |
| chr5_2 | three_prime_UTR | 72122242 | 72122549 | 72122242 | ID=Msa0786540-mRNA-1:three_prime_utr;Parent=Msa0786540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
