AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0728830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0728830 MtrunA17_Chr5g0443231 95.470 287 12 1 1 287 1 286 0.0 555
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0728830 AT1G06510.1 44.828 290 141 5 8 296 1 272 1.27e-73 228

Find 82 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACACGCGATTGGAATTTA+TGG 0.179941 5_1:+35115051 None:intergenic
TTTATTAGAGTTTATAAATA+TGG 0.232154 5_1:-35115109 Msa0728830:three_prime_UTR
TGCCGAATTTCATCGTATTA+AGG 0.289250 5_1:+35115871 None:intergenic
TGTTGCCACCTGGAATTCTT+TGG 0.293734 5_1:+35115603 None:intergenic
TTATACTGCATACGAAGATT+TGG 0.322526 5_1:-35115011 Msa0728830:three_prime_UTR
CTGCTGACTCCGATAATCTT+AGG 0.339518 5_1:+35116483 None:intergenic
GACCTTAATACGATGAAATT+CGG 0.351240 5_1:-35115873 Msa0728830:CDS
TAACCCACAATTACTTTATG+TGG 0.353300 5_1:-35115239 Msa0728830:three_prime_UTR
CTTTACCTCACTTAACTTTG+TGG 0.355447 5_1:+35116322 None:intergenic
CTTCTTATTGTCACGAATGA+AGG 0.374651 5_1:+35117789 None:intergenic
TAACCCTCTCTCACGGTAGA+AGG 0.398623 5_1:-35117864 Msa0728830:five_prime_UTR
ATCCTCATACGAGGATTTCA+TGG 0.401246 5_1:-35115715 Msa0728830:CDS
GGTAGCCGTACCCTTGGTTC+TGG 0.403703 5_1:+35117662 None:intergenic
AATAAAGCCACACTATTTGA+AGG 0.404655 5_1:+35115126 None:intergenic
TCAAGATATGCAAATTTCTT+CGG 0.409039 5_1:-35115844 Msa0728830:CDS
AAGAGAGACCAAAGAATTCC+AGG 0.414130 5_1:-35115611 Msa0728830:CDS
CATTTCCAGTGGCGGTGCTA+AGG 0.416658 5_1:+35115769 None:intergenic
CAATTACTTTATGTGGGAAC+GGG 0.419643 5_1:-35115232 Msa0728830:three_prime_UTR
ATTGAGGCTCCTAAGATTAT+CGG 0.420622 5_1:-35116492 Msa0728830:CDS
CTAGTTCAGTTTCAATCTCA+TGG 0.423872 5_1:+35115673 None:intergenic
AGCCACACTATTTGAAGGAC+TGG 0.452225 5_1:+35115131 None:intergenic
AGAGAATCCGCCGGATGATA+CGG 0.452905 5_1:-35115814 Msa0728830:CDS
TTGAAAGAAAGTCAGCTAGT+TGG 0.453383 5_1:-35116002 Msa0728830:CDS
TTCCATCGTTTGTTGCCACC+TGG 0.465887 5_1:+35115593 None:intergenic
TTCCATGAAATCCTCGTATG+AGG 0.468616 5_1:+35115713 None:intergenic
GGATATTTCTGACAAGCTGC+TGG 0.470813 5_1:+35115734 None:intergenic
TCTAACACAGTTCGGTATCA+TGG 0.474378 5_1:+35117839 None:intergenic
TTTGGAGCAACGATTCGAAC+GGG 0.477054 5_1:+35115933 None:intergenic
TGTCAATTCAAACACGCGAT+TGG 0.483097 5_1:+35115042 None:intergenic
ATTTCCAGTGGCGGTGCTAA+GGG 0.497416 5_1:+35115770 None:intergenic
TTCCCACATAAAGTAATTGT+GGG 0.501086 5_1:+35115236 None:intergenic
AGATCCCTTAGCACCGCCAC+TGG 0.504381 5_1:-35115774 Msa0728830:CDS
TTCTCTGTCTCCGTATCATC+CGG 0.504637 5_1:+35115804 None:intergenic
GTTCCCACATAAAGTAATTG+TGG 0.510809 5_1:+35115235 None:intergenic
TCAACAAAGCTTCTGCTGCC+AGG 0.512283 5_1:-35115307 Msa0728830:CDS
AGCGCAGCATAAGAAGCATA+TGG 0.512440 5_1:+35117758 None:intergenic
ATTAAGGTCAGAATCATCCT+TGG 0.515417 5_1:+35115887 None:intergenic
CGTTCGAATCGTTGCTCCAA+AGG 0.522561 5_1:-35115931 Msa0728830:CDS
ACAATTACTTTATGTGGGAA+CGG 0.536443 5_1:-35115233 Msa0728830:three_prime_UTR
GTTGTTACTCTAACACAGTT+CGG 0.540442 5_1:+35117831 None:intergenic
AACCCACAATTACTTTATGT+GGG 0.546354 5_1:-35115238 Msa0728830:three_prime_UTR
TTAAGGTCAGAATCATCCTT+GGG 0.555811 5_1:+35115888 None:intergenic
AGCAGCTATAAGCATGCAGA+AGG 0.557276 5_1:-35116444 Msa0728830:CDS
GGCGCCTTCTACCGTGAGAG+AGG 0.559750 5_1:+35117860 Msa0728840:CDS
ATTTGAAGGACTGGGCCACT+AGG 0.561495 5_1:+35115140 None:intergenic
CAGCTATAAGCATGCAGAAG+GGG 0.563154 5_1:-35116442 Msa0728830:CDS
ATGTATTGATTTACTCCTAG+TGG 0.569190 5_1:-35115155 Msa0728830:three_prime_UTR
AGCTATAAGCATGCAGAAGG+GGG 0.572769 5_1:-35116441 Msa0728830:CDS
TCGAATCGTTGCTCCAAAGG+AGG 0.581641 5_1:-35115928 Msa0728830:CDS
TAATGCCATGGATGATCTCA+AGG 0.581702 5_1:+35115568 None:intergenic
GCAGCTATAAGCATGCAGAA+GGG 0.583610 5_1:-35116443 Msa0728830:CDS
CAGCAAATAATGCTAGATTG+AGG 0.584425 5_1:-35116508 Msa0728830:CDS
TGTACCTCTGTCTAATGCCA+TGG 0.585756 5_1:+35115556 None:intergenic
GATATTTCTGACAAGCTGCT+GGG 0.593061 5_1:+35115735 None:intergenic
AGCCGTACCCTTGGTTCTGG+TGG 0.593224 5_1:+35117665 None:intergenic
GAACTCCTTGAGATCATCCA+TGG 0.594424 5_1:-35115573 Msa0728830:CDS
TGTGGGTTACAAGAAAATTG+TGG 0.597901 5_1:+35115253 None:intergenic
TGGAAATGTCACTATGAACA+TGG 0.602651 5_1:-35115982 Msa0728830:CDS
AGAGGGTTACAAATCCCCTA+TGG 0.604842 5_1:+35117878 Msa0728840:CDS
TGAAGGAACAGCCATGGTTG+TGG 0.606756 5_1:+35117806 None:intergenic
CACGAATGAAGGAACAGCCA+TGG 0.611848 5_1:+35117800 None:intergenic
CTTTGGAGCAACGATTCGAA+CGG 0.612772 5_1:+35115932 None:intergenic
TAACTGCTCTGTATTGATGA+TGG 0.615686 5_1:+35117725 None:intergenic
GCCACACTATTTGAAGGACT+GGG 0.616233 5_1:+35115132 None:intergenic
GCAGATACCACCAGAACCAA+GGG 0.616798 5_1:-35117672 Msa0728830:intron
AGCAGATACCACCAGAACCA+AGG 0.617947 5_1:-35117673 Msa0728830:CDS
GCGCCTTCTACCGTGAGAGA+GGG 0.618968 5_1:+35117861 Msa0728840:CDS
GCCCAGTCCTTCAAATAGTG+TGG 0.621774 5_1:-35115133 Msa0728830:three_prime_UTR
TCGCAGAATCAGAAGTGCCA+AGG 0.622972 5_1:-35115365 Msa0728830:intron
TTCCAGGTGGCAACAAACGA+TGG 0.631547 5_1:-35115595 Msa0728830:CDS
AATCTACTTGCTCACCATAG+GGG 0.651568 5_1:-35117892 None:intergenic
AGTTCTAAAAGATTCTCCCA+AGG 0.655268 5_1:-35115904 Msa0728830:CDS
GTGCCAAGGAAGCAAAAGTG+AGG 0.657708 5_1:-35115351 Msa0728830:CDS
GGAAAGTCAAGAGAATCCGC+CGG 0.657796 5_1:-35115823 Msa0728830:CDS
GGATTTGTAACCCTCTCTCA+CGG 0.661323 5_1:-35117871 Msa0728830:five_prime_UTR
GCTTTCCACAAAGTTAAGTG+AGG 0.667430 5_1:-35116327 Msa0728830:intron
AGTAACAACAGCCACAACCA+TGG 0.679105 5_1:-35117817 Msa0728830:CDS
TCTGTCTCCGTATCATCCGG+CGG 0.688773 5_1:+35115807 None:intergenic
GTCAGAAATATCCTCATACG+AGG 0.693843 5_1:-35115724 Msa0728830:CDS
TCATCCATGGCATTAGACAG+AGG 0.707537 5_1:-35115560 Msa0728830:CDS
GCTCGTCAAGCAATTCAATG+CGG 0.741102 5_1:+35116348 None:intergenic
AGAGACCAAAGAATTCCAGG+TGG 0.785770 5_1:-35115608 Msa0728830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAAATTCAAATTAACA+TGG + chr5_1:35115651-35115670 None:intergenic 10.0%
!!! ATGTTAATTTGAATTTATAA+AGG - chr5_1:35115650-35115669 Msa0728830:CDS 10.0%
!! AATGAAAATTAAATATTGAA+TGG - chr5_1:35115701-35115720 Msa0728830:CDS 10.0%
!! AAGATATTAAAACTTATTTA+CGG - chr5_1:35116332-35116351 Msa0728830:CDS 10.0%
!!! TATGAAAATTAATTTTGATT+AGG - chr5_1:35117393-35117412 Msa0728830:intron 10.0%
!! TTTATTAGAGTTTATAAATA+TGG - chr5_1:35117764-35117783 Msa0728830:CDS 10.0%
!! TATCCAAGTAAAAAAAAAAA+GGG + chr5_1:35115334-35115353 None:intergenic 15.0%
!!! TAAACATTTTATCTTAAGTT+TGG + chr5_1:35116307-35116326 None:intergenic 15.0%
!!! TAACAAAAATTAATTTGTTG+AGG - chr5_1:35116655-35116674 Msa0728830:intron 15.0%
!!! TATCTAAAATTAAAACAACT+AGG + chr5_1:35117424-35117443 None:intergenic 15.0%
!! AATAAGCAAGAATGAATAAT+GGG + chr5_1:35115235-35115254 None:intergenic 20.0%
!! AAATAAGCAAGAATGAATAA+TGG + chr5_1:35115236-35115255 None:intergenic 20.0%
!!! TTTTTACACAATTCAATGAT+GGG + chr5_1:35115306-35115325 None:intergenic 20.0%
!!! TTTTTTACACAATTCAATGA+TGG + chr5_1:35115307-35115326 None:intergenic 20.0%
!!! ATTCCCTTTTTTTTTTTACT+TGG - chr5_1:35115328-35115347 Msa0728830:CDS 20.0%
!! GTATCCAAGTAAAAAAAAAA+AGG + chr5_1:35115335-35115354 None:intergenic 20.0%
!!! AGTTCTAATTATTTAGTATC+AGG - chr5_1:35115771-35115790 Msa0728830:CDS 20.0%
!! TTAATTTATTTCACCTTTGA+TGG - chr5_1:35116090-35116109 Msa0728830:intron 20.0%
!! ATATTAAAACTTATTTACGG+TGG - chr5_1:35116335-35116354 Msa0728830:CDS 20.0%
!! ATATTACCTGAAAACAAAAT+AGG + chr5_1:35116849-35116868 None:intergenic 20.0%
!! ATCTAAATCTACAAATGAAA+CGG + chr5_1:35117374-35117393 None:intergenic 20.0%
!!! TTTAAGAGTATTCATATAAG+AGG - chr5_1:35117448-35117467 Msa0728830:intron 20.0%
!! TTTTACACAATTCAATGATG+GGG + chr5_1:35115305-35115324 None:intergenic 25.0%
! ATTAAGCTGTTTATCCAAAT+AGG - chr5_1:35115577-35115596 Msa0728830:CDS 25.0%
! TTAAGCTGTTTATCCAAATA+GGG - chr5_1:35115578-35115597 Msa0728830:CDS 25.0%
!! AAGTGCAATTTTATGCATAT+AGG + chr5_1:35115604-35115623 None:intergenic 25.0%
! TGAATTTATAAAGGTTCGTA+AGG - chr5_1:35115659-35115678 Msa0728830:CDS 25.0%
!!! GTTGTTTTCATAAGTTAAAC+AGG + chr5_1:35115881-35115900 None:intergenic 25.0%
! TTTATGTTGTATGTCCAAAT+TGG - chr5_1:35115967-35115986 Msa0728830:CDS 25.0%
! TTATGTTGTATGTCCAAATT+GGG - chr5_1:35115968-35115987 Msa0728830:CDS 25.0%
! ATAGCATTTATTCACTAAGT+AGG + chr5_1:35116248-35116267 None:intergenic 25.0%
! TATGCTTGTACAAAGAAAAA+AGG - chr5_1:35116474-35116493 Msa0728830:CDS 25.0%
! TGATATCATTGTCATAATGA+TGG + chr5_1:35116632-35116651 None:intergenic 25.0%
! TAAAACGTCATACAGTATAT+GGG - chr5_1:35116784-35116803 Msa0728830:intron 25.0%
!!! AAGAAACCTATTTTGTTTTC+AGG - chr5_1:35116840-35116859 Msa0728830:intron 25.0%
! TCAAGATATGCAAATTTCTT+CGG - chr5_1:35117029-35117048 Msa0728830:intron 25.0%
!!! AAATGTCTCAGTTTTAGTAT+TGG - chr5_1:35117233-35117252 Msa0728830:intron 25.0%
TTTACACAATTCAATGATGG+GGG + chr5_1:35115304-35115323 None:intergenic 30.0%
ACTGAGAGAATTTATGAACA+CGG - chr5_1:35115450-35115469 Msa0728830:intron 30.0%
!!! CATGTTTTGCTTTTTATAGC+TGG + chr5_1:35115751-35115770 None:intergenic 30.0%
GCTTTATGAATCTACATCTA+TGG - chr5_1:35116063-35116082 Msa0728830:intron 30.0%
TGGTTTATGATAGAACACTA+TGG - chr5_1:35116152-35116171 Msa0728830:intron 30.0%
! TAGTGTCAGTTTGTTCAAAT+TGG - chr5_1:35116692-35116711 Msa0728830:intron 30.0%
CTAAAACGTCATACAGTATA+TGG - chr5_1:35116783-35116802 Msa0728830:intron 30.0%
AAAACGTCATACAGTATATG+GGG - chr5_1:35116785-35116804 Msa0728830:intron 30.0%
GACCTTAATACGATGAAATT+CGG - chr5_1:35117000-35117019 Msa0728830:intron 30.0%
!!! TATGTTGTTTTCATTTCCAG+TGG + chr5_1:35117118-35117137 None:intergenic 30.0%
!! AAGAGTATTCATATAAGAGG+CGG - chr5_1:35117451-35117470 Msa0728830:intron 30.0%
TAACCCACAATTACTTTATG+TGG - chr5_1:35117634-35117653 Msa0728830:intron 30.0%
AACCCACAATTACTTTATGT+GGG - chr5_1:35117635-35117654 Msa0728830:intron 30.0%
TTCCCACATAAAGTAATTGT+GGG + chr5_1:35117640-35117659 None:intergenic 30.0%
ACAATTACTTTATGTGGGAA+CGG - chr5_1:35117640-35117659 Msa0728830:intron 30.0%
!! ATGTATTGATTTACTCCTAG+TGG - chr5_1:35117718-35117737 Msa0728830:CDS 30.0%
AATAAAGCCACACTATTTGA+AGG + chr5_1:35117750-35117769 None:intergenic 30.0%
TTATACTGCATACGAAGATT+TGG - chr5_1:35117862-35117881 Msa0728830:five_prime_UTR 30.0%
GTTGTTACTCTAACACAGTT+CGG + chr5_1:35115045-35115064 None:intergenic 35.0%
CTTCTTATTGTCACGAATGA+AGG + chr5_1:35115087-35115106 None:intergenic 35.0%
! TAACTGCTCTGTATTGATGA+TGG + chr5_1:35115151-35115170 None:intergenic 35.0%
AATACGCCTCTCAAGATTAT+GGG - chr5_1:35115367-35115386 Msa0728830:intron 35.0%
TTATGCATATAGGCCCTATT+TGG + chr5_1:35115594-35115613 None:intergenic 35.0%
TCTGACTAGTGCTTATTTGT+AGG + chr5_1:35115812-35115831 None:intergenic 35.0%
AGTCAGATTGTGAGAGTTTA+TGG - chr5_1:35115825-35115844 Msa0728830:CDS 35.0%
TACATGATACATGAATTGCG+TGG - chr5_1:35116024-35116043 Msa0728830:intron 35.0%
AGGCTTATGATAGAACACTA+TGG - chr5_1:35116132-35116151 Msa0728830:intron 35.0%
CAGCAAATAATGCTAGATTG+AGG - chr5_1:35116365-35116384 Msa0728830:CDS 35.0%
ATTGAGGCTCCTAAGATTAT+CGG - chr5_1:35116381-35116400 Msa0728830:CDS 35.0%
!! AAAAAAGGTGTTGCAAGCTT+TGG - chr5_1:35116489-35116508 Msa0728830:CDS 35.0%
CTTTACCTCACTTAACTTTG+TGG + chr5_1:35116554-35116573 None:intergenic 35.0%
ATTTGATTGTCAAGCATGTC+TGG + chr5_1:35116745-35116764 None:intergenic 35.0%
TTGAAAGAAAGTCAGCTAGT+TGG - chr5_1:35116871-35116890 Msa0728830:intron 35.0%
TGGAAATGTCACTATGAACA+TGG - chr5_1:35116891-35116910 Msa0728830:intron 35.0%
!!! TCTTTTAGAACTTCCTCCTT+TGG + chr5_1:35116961-35116980 None:intergenic 35.0%
!! AGTTCTAAAAGATTCTCCCA+AGG - chr5_1:35116969-35116988 Msa0728830:intron 35.0%
TTAAGGTCAGAATCATCCTT+GGG + chr5_1:35116988-35117007 None:intergenic 35.0%
ATTAAGGTCAGAATCATCCT+TGG + chr5_1:35116989-35117008 None:intergenic 35.0%
TGCCGAATTTCATCGTATTA+AGG + chr5_1:35117005-35117024 None:intergenic 35.0%
CTAGTTCAGTTTCAATCTCA+TGG + chr5_1:35117203-35117222 None:intergenic 35.0%
! TGTGGGTTACAAGAAAATTG+TGG + chr5_1:35117623-35117642 None:intergenic 35.0%
GTTCCCACATAAAGTAATTG+TGG + chr5_1:35117641-35117660 None:intergenic 35.0%
CAATTACTTTATGTGGGAAC+GGG - chr5_1:35117641-35117660 Msa0728830:intron 35.0%
AAACACGCGATTGGAATTTA+TGG + chr5_1:35117825-35117844 None:intergenic 35.0%
TCTAACACAGTTCGGTATCA+TGG + chr5_1:35115037-35115056 None:intergenic 40.0%
! ATGATGGGGGTGACAATAAT+GGG + chr5_1:35115291-35115310 None:intergenic 40.0%
! AATGATGGGGGTGACAATAA+TGG + chr5_1:35115292-35115311 None:intergenic 40.0%
! CATAATCTTGAGAGGCGTAT+TGG + chr5_1:35115368-35115387 None:intergenic 40.0%
CAATACGCCTCTCAAGATTA+TGG - chr5_1:35115366-35115385 Msa0728830:intron 40.0%
AACATGCCCATAATCTTGAG+AGG + chr5_1:35115376-35115395 None:intergenic 40.0%
CTCAAGATTATGGGCATGTT+TGG - chr5_1:35115376-35115395 Msa0728830:intron 40.0%
AAGTTAAACAGGAGAGCTTG+TGG + chr5_1:35115870-35115889 None:intergenic 40.0%
TGAAGAGACTAGACCCAATT+TGG + chr5_1:35115984-35116003 None:intergenic 40.0%
TTGGGTCTAGTCTCTTCAAT+AGG - chr5_1:35115986-35116005 Msa0728830:CDS 40.0%
ACTAAGTAGGTCTCCATCAA+AGG + chr5_1:35116106-35116125 None:intergenic 40.0%
TTTGATGGAGACCTACTTAG+TGG - chr5_1:35116105-35116124 Msa0728830:intron 40.0%
TTGATGGAGACCTACTTAGT+GGG - chr5_1:35116106-35116125 Msa0728830:intron 40.0%
! TAAGCCTTATCCCACTAAGT+AGG + chr5_1:35116119-35116138 None:intergenic 40.0%
! AAGCTTTATCCCACTAAGTG+GGG + chr5_1:35116201-35116220 None:intergenic 40.0%
! CAAGCTTTATCCCACTAAGT+GGG + chr5_1:35116202-35116221 None:intergenic 40.0%
!! TTGTTTCTGACCTTTGCTAG+AGG - chr5_1:35116272-35116291 Msa0728830:intron 40.0%
! TGTTTCTGACCTTTGCTAGA+GGG - chr5_1:35116273-35116292 Msa0728830:intron 40.0%
AGGGGGATGAAAATTATGCA+AGG - chr5_1:35116449-35116468 Msa0728830:CDS 40.0%
GGGGGATGAAAATTATGCAA+GGG - chr5_1:35116450-35116469 Msa0728830:CDS 40.0%
GCTTTCCACAAAGTTAAGTG+AGG - chr5_1:35116546-35116565 Msa0728830:intron 40.0%
ATGATGAGGTAGTAGACACA+TGG + chr5_1:35116720-35116739 None:intergenic 40.0%
CATACAGTATATGGGGACAA+AGG - chr5_1:35116792-35116811 Msa0728830:intron 40.0%
!! GTTGTTTTCATTTCCAGTGG+CGG + chr5_1:35117115-35117134 None:intergenic 40.0%
! GATATTTCTGACAAGCTGCT+GGG + chr5_1:35117141-35117160 None:intergenic 40.0%
GTCAGAAATATCCTCATACG+AGG - chr5_1:35117149-35117168 Msa0728830:intron 40.0%
ATCCTCATACGAGGATTTCA+TGG - chr5_1:35117158-35117177 Msa0728830:intron 40.0%
TTCCATGAAATCCTCGTATG+AGG + chr5_1:35117163-35117182 None:intergenic 40.0%
AAGAGAGACCAAAGAATTCC+AGG - chr5_1:35117262-35117281 Msa0728830:intron 40.0%
TAATGCCATGGATGATCTCA+AGG + chr5_1:35117308-35117327 None:intergenic 40.0%
!!! GACTCAAGTTAGTTTTCACC+TGG + chr5_1:35117587-35117606 None:intergenic 40.0%
TGTCAATTCAAACACGCGAT+TGG + chr5_1:35117834-35117853 None:intergenic 40.0%
GGATTTGTAACCCTCTCTCA+CGG - chr5_1:35115002-35115021 Msa0728830:three_prime_UTR 45.0%
AGTAACAACAGCCACAACCA+TGG - chr5_1:35115056-35115075 Msa0728830:three_prime_UTR 45.0%
! AGCGCAGCATAAGAAGCATA+TGG + chr5_1:35115118-35115137 None:intergenic 45.0%
GAGACCTACTTAGTGGGATA+AGG - chr5_1:35116112-35116131 Msa0728830:intron 45.0%
! CCAAGCTTTATCCCACTAAG+TGG + chr5_1:35116203-35116222 None:intergenic 45.0%
CCACTTAGTGGGATAAAGCT+TGG - chr5_1:35116200-35116219 Msa0728830:intron 45.0%
!! CTGCTGACTCCGATAATCTT+AGG + chr5_1:35116393-35116412 None:intergenic 45.0%
AGCAGCTATAAGCATGCAGA+AGG - chr5_1:35116429-35116448 Msa0728830:CDS 45.0%
GCAGCTATAAGCATGCAGAA+GGG - chr5_1:35116430-35116449 Msa0728830:CDS 45.0%
CAGCTATAAGCATGCAGAAG+GGG - chr5_1:35116431-35116450 Msa0728830:CDS 45.0%
AGCTATAAGCATGCAGAAGG+GGG - chr5_1:35116432-35116451 Msa0728830:CDS 45.0%
GCTCGTCAAGCAATTCAATG+CGG + chr5_1:35116528-35116547 None:intergenic 45.0%
AAGCATGTCTGGCAATGATG+AGG + chr5_1:35116734-35116753 None:intergenic 45.0%
! TTTGGAGCAACGATTCGAAC+GGG + chr5_1:35116943-35116962 None:intergenic 45.0%
!! CTTTGGAGCAACGATTCGAA+CGG + chr5_1:35116944-35116963 None:intergenic 45.0%
TTCTCTGTCTCCGTATCATC+CGG + chr5_1:35117072-35117091 None:intergenic 45.0%
! GGATATTTCTGACAAGCTGC+TGG + chr5_1:35117142-35117161 None:intergenic 45.0%
AGAGACCAAAGAATTCCAGG+TGG - chr5_1:35117265-35117284 Msa0728830:intron 45.0%
TGTTGCCACCTGGAATTCTT+TGG + chr5_1:35117273-35117292 None:intergenic 45.0%
GAACTCCTTGAGATCATCCA+TGG - chr5_1:35117300-35117319 Msa0728830:intron 45.0%
TCATCCATGGCATTAGACAG+AGG - chr5_1:35117313-35117332 Msa0728830:intron 45.0%
TGTACCTCTGTCTAATGCCA+TGG + chr5_1:35117320-35117339 None:intergenic 45.0%
!! GATCCTCACTTTTGCTTCCT+TGG + chr5_1:35117528-35117547 None:intergenic 45.0%
GCCACACTATTTGAAGGACT+GGG + chr5_1:35117744-35117763 None:intergenic 45.0%
AGCCACACTATTTGAAGGAC+TGG + chr5_1:35117745-35117764 None:intergenic 45.0%
!!! TTTATTTTTATTTAATCATT+TGG - chr5_1:35115495-35115514 Msa0728830:intron 5.0%
TAACCCTCTCTCACGGTAGA+AGG - chr5_1:35115009-35115028 Msa0728830:three_prime_UTR 50.0%
TGAAGGAACAGCCATGGTTG+TGG + chr5_1:35115070-35115089 None:intergenic 50.0%
CACGAATGAAGGAACAGCCA+TGG + chr5_1:35115076-35115095 None:intergenic 50.0%
AGCAGATACCACCAGAACCA+AGG - chr5_1:35115200-35115219 Msa0728830:three_prime_UTR 50.0%
GCAGATACCACCAGAACCAA+GGG - chr5_1:35115201-35115220 Msa0728830:three_prime_UTR 50.0%
TACCACCAGAACCAAGGGTA+CGG - chr5_1:35115206-35115225 Msa0728830:three_prime_UTR 50.0%
!! ATAATGGGTAGCCGTACCCT+TGG + chr5_1:35115220-35115239 None:intergenic 50.0%
ACTAAGTGGGGTCAGCTACA+TGG + chr5_1:35116189-35116208 None:intergenic 50.0%
ATGTAGCTGACCCCACTTAG+TGG - chr5_1:35116188-35116207 Msa0728830:intron 50.0%
TGTAGCTGACCCCACTTAGT+GGG - chr5_1:35116189-35116208 Msa0728830:intron 50.0%
GACATGTCACCCTCTAGCAA+AGG + chr5_1:35116285-35116304 None:intergenic 50.0%
CGTTCGAATCGTTGCTCCAA+AGG - chr5_1:35116942-35116961 Msa0728830:intron 50.0%
TCGAATCGTTGCTCCAAAGG+AGG - chr5_1:35116945-35116964 Msa0728830:intron 50.0%
GGAAAGTCAAGAGAATCCGC+CGG - chr5_1:35117050-35117069 Msa0728830:intron 50.0%
AGAGAATCCGCCGGATGATA+CGG - chr5_1:35117059-35117078 Msa0728830:intron 50.0%
! ATTTCCAGTGGCGGTGCTAA+GGG + chr5_1:35117106-35117125 None:intergenic 50.0%
TTCCAGGTGGCAACAAACGA+TGG - chr5_1:35117278-35117297 Msa0728830:intron 50.0%
! TTCCATCGTTTGTTGCCACC+TGG + chr5_1:35117283-35117302 None:intergenic 50.0%
TAAGAGGCGGAAAGTAACGC+AGG - chr5_1:35117464-35117483 Msa0728830:intron 50.0%
AAGAGGCGGAAAGTAACGCA+GGG - chr5_1:35117465-35117484 Msa0728830:intron 50.0%
!! TCGCAGAATCAGAAGTGCCA+AGG - chr5_1:35117508-35117527 Msa0728830:intron 50.0%
GTGCCAAGGAAGCAAAAGTG+AGG - chr5_1:35117522-35117541 Msa0728830:intron 50.0%
TCAACAAAGCTTCTGCTGCC+AGG - chr5_1:35117566-35117585 Msa0728830:intron 50.0%
ATTTGAAGGACTGGGCCACT+AGG + chr5_1:35117736-35117755 None:intergenic 50.0%
GCCCAGTCCTTCAAATAGTG+TGG - chr5_1:35117740-35117759 Msa0728830:CDS 50.0%
TCTGTCTCCGTATCATCCGG+CGG + chr5_1:35117069-35117088 None:intergenic 55.0%
! CATTTCCAGTGGCGGTGCTA+AGG + chr5_1:35117107-35117126 None:intergenic 55.0%
GCGCCTTCTACCGTGAGAGA+GGG + chr5_1:35115015-35115034 None:intergenic 60.0%
!! AGCCGTACCCTTGGTTCTGG+TGG + chr5_1:35115211-35115230 None:intergenic 60.0%
GGTAGCCGTACCCTTGGTTC+TGG + chr5_1:35115214-35115233 None:intergenic 60.0%
AGATCCCTTAGCACCGCCAC+TGG - chr5_1:35117099-35117118 Msa0728830:intron 60.0%
GGCGCCTTCTACCGTGAGAG+AGG + chr5_1:35115016-35115035 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 35114996 35117899 35114996 ID=Msa0728830;Name=Msa0728830
chr5_1 mRNA 35114996 35117899 35114996 ID=Msa0728830-mRNA-1;Parent=Msa0728830;Name=Msa0728830-mRNA-1;_AED=0.02;_eAED=0.02;_QI=40|0.66|0.75|1|1|1|4|308|316
chr5_1 exon 35114996 35115381 35114996 ID=Msa0728830-mRNA-1:exon:10868;Parent=Msa0728830-mRNA-1
chr5_1 exon 35115548 35116033 35115548 ID=Msa0728830-mRNA-1:exon:10867;Parent=Msa0728830-mRNA-1
chr5_1 exon 35116328 35116527 35116328 ID=Msa0728830-mRNA-1:exon:10866;Parent=Msa0728830-mRNA-1
chr5_1 exon 35117673 35117899 35117673 ID=Msa0728830-mRNA-1:exon:10865;Parent=Msa0728830-mRNA-1
chr5_1 five_prime_UTR 35117860 35117899 35117860 ID=Msa0728830-mRNA-1:five_prime_utr;Parent=Msa0728830-mRNA-1
chr5_1 CDS 35117673 35117859 35117673 ID=Msa0728830-mRNA-1:cds;Parent=Msa0728830-mRNA-1
chr5_1 CDS 35116328 35116527 35116328 ID=Msa0728830-mRNA-1:cds;Parent=Msa0728830-mRNA-1
chr5_1 CDS 35115548 35116033 35115548 ID=Msa0728830-mRNA-1:cds;Parent=Msa0728830-mRNA-1
chr5_1 CDS 35115304 35115381 35115304 ID=Msa0728830-mRNA-1:cds;Parent=Msa0728830-mRNA-1
chr5_1 three_prime_UTR 35114996 35115303 35114996 ID=Msa0728830-mRNA-1:three_prime_utr;Parent=Msa0728830-mRNA-1
Gene Sequence

>Msa0728830

ATGATACCGAACTGTGTTAGAGTAACAACAGCCACAACCATGGCTGTTCCTTCATTCGTGACAATAAGAAGAAGAAGATCCATATGCTTCTTATGCTGCGCTTCTTCTTCAACCATCATCAATACAGAGCAGTTACGTTCTCAACTTGATCATCTTCATGCTGAAGCAGATACCACCAGAACCAAGGCAAATAATGCTAGATTGAGGCTCCTAAGATTATCGGAGTCAGCAGAGAAGCTTAAAAAACAAGCAGCTATAAGCATGCAGAAGGGGGATGAAAATTATGCAAGGGATATGCTTGTACAAAGAAAAAAGGTGTTGCAAGCTTTGGAGAAGTCTAAAAGCCGCATTGAATTGCTTGACGAGCTTTCCACAAAGTTAAGTGAGGTAATATCTTTGAAAGAAAGTCAGCTAGTTGGAAATGTCACTATGAACATGGAAGACACAACAGAAGATGCTTCAAGTCCCGTTCGAATCGTTGCTCCAAAGGAGGAAGTTCTAAAAGATTCTCCCAAGGATGATTCTGACCTTAATACGATGAAATTCGGCAATAATCAAGATATGCAAATTTCTTCGGAAAGTCAAGAGAATCCGCCGGATGATACGGAGACAGAGAATCTTCTGAGATCCCTTAGCACCGCCACTGGAAATGAAAACAACATACCCAGCAGCTTGTCAGAAATATCCTCATACGAGGATTTCATGGAACATATAGATCAAAAGCTCCATGAGATTGAAACTGAACTAGTTGCTTTTTTAAATGTCTCAGTTTTAGTATTGGATAGTGAAGAGAGACCAAAGAATTCCAGGTGGCAACAAACGATGGAACTCCTTGAGATCATCCATGGCATTAGACAGAGGTACAACATTTCAAATCAGAAGTGCCAAGGAAGCAAAAGTGAGGATCTGATCAATTTTGCTTTGCTCAACAAAGCTTCTGCTGCCAGGTGA

Protein sequence

>Msa0728830

MIPNCVRVTTATTMAVPSFVTIRRRRSICFLCCASSSTIINTEQLRSQLDHLHAEADTTRTKANNARLRLLRLSESAEKLKKQAAISMQKGDENYARDMLVQRKKVLQALEKSKSRIELLDELSTKLSEVISLKESQLVGNVTMNMEDTTEDASSPVRIVAPKEEVLKDSPKDDSDLNTMKFGNNQDMQISSESQENPPDDTETENLLRSLSTATGNENNIPSSLSEISSYEDFMEHIDQKLHEIETELVAFLNVSVLVLDSEERPKNSRWQQTMELLEIIHGIRQRYNISNQKCQGSKSEDLINFALLNKASAAR*