AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1361090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1361090 MtrunA17_Chr3g0144291 98.340 241 4 0 1 241 1 241 0.0 496
Msa1361090 MtrunA17_Chr6g0463171 95.775 71 3 0 148 218 9 79 1.02e-45 147
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1361090 AT1G76450.1 56.048 248 101 4 1 241 1 247 4.00e-94 276

Find 85 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAATTAGATTCCTCTTT+TGG 0.168788 tig0017334:-31432 None:intergenic
GAAGTTAACCTTCTGAATTT+TGG 0.181807 tig0017334:-32310 None:intergenic
GAGAGAGAAGCTGATCTTAA+AGG 0.213636 tig0017334:+30605 Msa1361090:five_prime_UTR
GGTTTGTTGCTTACGGAAAA+TGG 0.261563 tig0017334:+32738 Msa1361090:three_prime_UTR
GCTATGCATTTATACTGTTT+TGG 0.274479 tig0017334:-32668 None:intergenic
AAACATCTATATTCAGCTAT+TGG 0.276276 tig0017334:+32055 Msa1361090:CDS
TTTATGATGTTCCACGGTTA+TGG 0.286936 tig0017334:-30793 None:intergenic
TTTGGATCAGAGTGGCAAAT+TGG 0.331290 tig0017334:+31366 Msa1361090:intron
AAGGAATGGCATCCATTTCA+TGG 0.346543 tig0017334:+30624 Msa1361090:exon
ATAGGAAAGAATGATGAAAA+AGG 0.359605 tig0017334:+32761 Msa1361090:three_prime_UTR
CTCTCTCTCCTCTCATCCTT+CGG 0.362366 tig0017334:-30587 None:intergenic
AACATCTATATTCAGCTATT+GGG 0.365323 tig0017334:+32056 Msa1361090:CDS
GATTCCATCTTAGTGAAATC+TGG 0.369687 tig0017334:-31565 None:intergenic
CCCTTGTGGTTTGTTGCTTA+CGG 0.388072 tig0017334:+32731 Msa1361090:three_prime_UTR
TGTAATTAAACAGATAATAA+AGG 0.393288 tig0017334:+30562 Msa1361090:five_prime_UTR
TTATGATGTTCCACGGTTAT+GGG 0.420864 tig0017334:-30792 None:intergenic
AGGACCTTTGTCGCCGGCAG+TGG 0.426577 tig0017334:-30675 None:intergenic
AACTGCTTTCTACCCAAAAG+AGG 0.462382 tig0017334:+31419 Msa1361090:CDS
AAGGGATTACTCCATCCGTC+AGG 0.475210 tig0017334:+32859 Msa1361090:three_prime_UTR
TCAGAGTGGCAAATTGGAAC+AGG 0.480833 tig0017334:+31372 Msa1361090:intron
GGGTCCAGATTTCACTAAGA+TGG 0.482457 tig0017334:+31561 Msa1361090:CDS
TTTGACAAACATTTCTAGCA+TGG 0.489768 tig0017334:-32596 None:intergenic
TTAGTGGGTTGGACAGAAGC+TGG 0.491375 tig0017334:+31719 Msa1361090:CDS
ATCCGACCAACTGCCACTGC+CGG 0.492198 tig0017334:+30662 Msa1361090:CDS
GCTATTGGGATGTTAACAAA+TGG 0.498373 tig0017334:+32070 Msa1361090:CDS
GCGATGTAGGATCTTCTTGA+TGG 0.498530 tig0017334:-32912 None:intergenic
TTCACTAAGATGGAATCATT+CGG 0.500644 tig0017334:+31571 Msa1361090:CDS
CGACATGCAGTATGGGGAAG+AGG 0.500781 tig0017334:+32269 Msa1361090:intron
TTCAACTTACGTTGCGATGT+AGG 0.502534 tig0017334:-32925 None:intergenic
TATGAATATGACAGGTTAGT+GGG 0.511045 tig0017334:+31704 Msa1361090:intron
GTTGCTTACGGAAAATGGAT+AGG 0.512749 tig0017334:+32743 Msa1361090:three_prime_UTR
GAAGTGAATACAAGTACCTT+CGG 0.514178 tig0017334:+32698 Msa1361090:three_prime_UTR
CGCCGGCAGTGGCAGTTGGT+CGG 0.516601 tig0017334:-30664 None:intergenic
TTCTTATATTCGAGACTGGA+GGG 0.518993 tig0017334:-33044 None:intergenic
ATCAGCTCATCCTCACAAGA+AGG 0.525102 tig0017334:+30985 Msa1361090:intron
AACAGACTGTATACAGTGAC+AGG 0.526154 tig0017334:+32100 Msa1361090:CDS
ATAGATTGTAAATCATCTAA+AGG 0.527370 tig0017334:+31772 Msa1361090:CDS
TAGACAGCTGAACCATGAAA+TGG 0.530629 tig0017334:-30636 None:intergenic
TTATGAATATGACAGGTTAG+TGG 0.533288 tig0017334:+31703 Msa1361090:intron
ATTGGAACAGGAGAATCTGC+AGG 0.533573 tig0017334:+31384 Msa1361090:CDS
TTGTCGCCGGCAGTGGCAGT+TGG 0.534455 tig0017334:-30668 None:intergenic
GAGTATACACTGCAAAGTCC+TGG 0.539737 tig0017334:+32022 Msa1361090:CDS
ACTGCCACTGCCGGCGACAA+AGG 0.540659 tig0017334:+30671 Msa1361090:CDS
CTATTGAATGTTGACTCGGT+TGG 0.547055 tig0017334:-32978 None:intergenic
ATCTACTGACTCAAATGCAT+TGG 0.548024 tig0017334:+31068 Msa1361090:CDS
TTGGGATGTTAACAAATGGC+TGG 0.548862 tig0017334:+32074 Msa1361090:CDS
CTCTGTAAACGCATCCCTGA+CGG 0.553705 tig0017334:-32874 None:intergenic
AGATGTTTGCGACCCTCACC+AGG 0.558500 tig0017334:-32040 None:intergenic
TCAAATGCATTGGCACTCAA+TGG 0.559351 tig0017334:+31078 Msa1361090:CDS
AGAAGCTGATCTTAAAGGAA+TGG 0.566145 tig0017334:+30610 Msa1361090:exon
TGAAGAATTTGCTGACACTC+TGG 0.569769 tig0017334:+31600 Msa1361090:CDS
GTTGATTCATCTTAAGACTG+TGG 0.571726 tig0017334:-32949 None:intergenic
TGGTGAAGGACCTTTGTCGC+CGG 0.574688 tig0017334:-30681 None:intergenic
TTTCTTATATTCGAGACTGG+AGG 0.577897 tig0017334:-33045 None:intergenic
AATATGACAGGTTAGTGGGT+TGG 0.579569 tig0017334:+31708 Msa1361090:intron
AAAGAGGAATCTAATTCCAA+TGG 0.583004 tig0017334:+31435 Msa1361090:CDS
GCAGTGAGCGTTGTGATCAC+AGG 0.585258 tig0017334:+31535 Msa1361090:intron
ATGAGTTTAGCAGCCACACC+AGG 0.586123 tig0017334:-31751 None:intergenic
TAAAGGAACCGAAGGATGAG+AGG 0.588015 tig0017334:+30579 Msa1361090:five_prime_UTR
TAAGCTATTGAATGTTGACT+CGG 0.592204 tig0017334:-32982 None:intergenic
TGAAGCTGCAATTGCTGCGG+TGG 0.592489 tig0017334:-31046 None:intergenic
TACACTGCAAAGTCCTGGTG+AGG 0.595200 tig0017334:+32027 Msa1361090:CDS
GTATGCTTCCAAAATTCAGA+AGG 0.596845 tig0017334:+32302 Msa1361090:CDS
AGCGTTGTGATCACAGGAGT+GGG 0.598156 tig0017334:+31541 Msa1361090:CDS
ACAGATAATAAAGGAACCGA+AGG 0.598767 tig0017334:+30571 Msa1361090:five_prime_UTR
AACCGCAAGTCCTTCTTGTG+AGG 0.610452 tig0017334:-30995 None:intergenic
ACTGTATACAGTGACAGGAC+AGG 0.614449 tig0017334:+32105 Msa1361090:CDS
AATGTAATGAAAACATCATG+AGG 0.616777 tig0017334:-32569 None:intergenic
GAGCGTTGTGATCACAGGAG+TGG 0.623369 tig0017334:+31540 Msa1361090:CDS
GTAAACGCATCCCTGACGGA+TGG 0.625811 tig0017334:-32870 None:intergenic
ATGTAATGAAAACATCATGA+GGG 0.634868 tig0017334:-32568 None:intergenic
TCCGTAAGCAACAAACCACA+AGG 0.635610 tig0017334:-32732 None:intergenic
AGGGATTACTCCATCCGTCA+GGG 0.639880 tig0017334:+32860 Msa1361090:three_prime_UTR
TCGGTTAAACATTACCCTTG+TGG 0.650079 tig0017334:+32717 Msa1361090:three_prime_UTR
CAAGGGTAATGTTTAACCGA+AGG 0.654529 tig0017334:-32714 None:intergenic
CGTCAGGGATGCGTTTACAG+AGG 0.673387 tig0017334:+32875 Msa1361090:three_prime_UTR
TTGGAACAGGAGAATCTGCA+GGG 0.677070 tig0017334:+31385 Msa1361090:CDS
ATCCTCACAAGAAGGACTTG+CGG 0.678162 tig0017334:+30993 Msa1361090:CDS
AGTTTAGCAGCCACACCAGG+TGG 0.683789 tig0017334:-31748 None:intergenic
TTTATCATCTCCCATAACCG+TGG 0.686526 tig0017334:+30782 Msa1361090:CDS
ACACTGCAAAGTCCTGGTGA+GGG 0.688636 tig0017334:+32028 Msa1361090:CDS
TTCAAGATAGATATTCCACA+AGG 0.719102 tig0017334:+31249 Msa1361090:CDS
CCGTAAGCAACAAACCACAA+GGG 0.722121 tig0017334:-32731 None:intergenic
AGATGAAGCTGCAATTGCTG+CGG 0.735552 tig0017334:-31049 None:intergenic
GTGTGTCGCAGATGTGACTG+AGG 0.758838 tig0017334:+31194 Msa1361090:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATGCTTAATAATATTA+TGG + tig0017334:30948-30967 Msa1361090:intron 10.0%
!! TGTAATTAAACAGATAATAA+AGG + tig0017334:30562-30581 Msa1361090:five_prime_UTR 15.0%
!!! ACTTTTTTGTTTTAATGATT+TGG + tig0017334:31348-31367 Msa1361090:intron 15.0%
!! TAATATATTATGAATATGAC+AGG + tig0017334:31696-31715 Msa1361090:intron 15.0%
!!! ATAGTAAATATCATACTTTT+AGG - tig0017334:32624-32643 None:intergenic 15.0%
!! AAAAAAAAAAAAGAGAAAGT+AGG + tig0017334:32791-32810 Msa1361090:three_prime_UTR 15.0%
!!! ATACTGTTCAATATTTCTAA+TGG + tig0017334:30735-30754 Msa1361090:intron 20.0%
!!! TTTTCTTACAGTAAATTTTG+TGG - tig0017334:30825-30844 None:intergenic 20.0%
!! ATAGATTGTAAATCATCTAA+AGG + tig0017334:31772-31791 Msa1361090:CDS 20.0%
!!! TACTAAGCAACATTATTTTT+TGG - tig0017334:32226-32245 None:intergenic 20.0%
!! TAAAATATTTGACAGAACAA+AGG + tig0017334:32351-32370 Msa1361090:intron 20.0%
!!! TATATAGTTCTGAATTTTGA+AGG + tig0017334:32823-32842 Msa1361090:three_prime_UTR 20.0%
! ATTTAGTATACAAATGAGGA+AGG - tig0017334:30711-30730 None:intergenic 25.0%
! GCAAATTTAGTATACAAATG+AGG - tig0017334:30715-30734 None:intergenic 25.0%
! TAAACCTGAACAAAAAACTT+AGG - tig0017334:30766-30785 None:intergenic 25.0%
! TTGTATTGTTACTACTACAT+CGG + tig0017334:31134-31153 Msa1361090:intron 25.0%
! TTTCAATTAAATTCACCTTG+TGG - tig0017334:31267-31286 None:intergenic 25.0%
! GGTGAATTTAATTGAAAGTT+TGG + tig0017334:31270-31289 Msa1361090:intron 25.0%
!! TTTGAGTTTGATTATACCAT+TGG - tig0017334:31454-31473 None:intergenic 25.0%
! GATTCATAACTATTATTTGC+TGG + tig0017334:31639-31658 Msa1361090:intron 25.0%
! AAGCAAAATAGTTATGAATC+TGG - tig0017334:31677-31696 None:intergenic 25.0%
! AGGGAAAGAAAATATGTTAT+AGG + tig0017334:31871-31890 Msa1361090:intron 25.0%
! ACTTCTCAAAACTGAAATTA+TGG + tig0017334:31935-31954 Msa1361090:intron 25.0%
! CTTCTCAAAACTGAAATTAT+GGG + tig0017334:31936-31955 Msa1361090:intron 25.0%
! AAACATCTATATTCAGCTAT+TGG + tig0017334:32055-32074 Msa1361090:CDS 25.0%
! AACATCTATATTCAGCTATT+GGG + tig0017334:32056-32075 Msa1361090:CDS 25.0%
! ATACTCAAAGATATTCATTC+TGG + tig0017334:32379-32398 Msa1361090:intron 25.0%
!! TTTTTCTTTGCTTTCTTTCA+TGG + tig0017334:32542-32561 Msa1361090:three_prime_UTR 25.0%
!! TTTTCTTTGCTTTCTTTCAT+GGG + tig0017334:32543-32562 Msa1361090:three_prime_UTR 25.0%
! ATGTAATGAAAACATCATGA+GGG - tig0017334:32571-32590 None:intergenic 25.0%
! AATGTAATGAAAACATCATG+AGG - tig0017334:32572-32591 None:intergenic 25.0%
!!! TTTTGGTTTATCAGTTTTGA+AGG - tig0017334:32654-32673 None:intergenic 25.0%
! ATAGGAAAGAATGATGAAAA+AGG + tig0017334:32761-32780 Msa1361090:three_prime_UTR 25.0%
!!! TCTGAATTTTGAAGGAAAAA+AGG + tig0017334:32831-32850 Msa1361090:three_prime_UTR 25.0%
!!! CTGAATTTTGAAGGAAAAAA+GGG + tig0017334:32832-32851 Msa1361090:three_prime_UTR 25.0%
!!! TGAATTTTGAAGGAAAAAAG+GGG + tig0017334:32833-32852 Msa1361090:three_prime_UTR 25.0%
!! TATTTTCTTATATTCGAGAC+TGG - tig0017334:33051-33070 None:intergenic 25.0%
!!! TTTGCCTAAGTTTTTTGTTC+AGG + tig0017334:30759-30778 Msa1361090:intron 30.0%
!!! TCTTGTTTTATGATGTTCCA+CGG - tig0017334:30802-30821 None:intergenic 30.0%
TTCAATGTTTAAGCATGATG+AGG - tig0017334:30886-30905 None:intergenic 30.0%
TTCAAGATAGATATTCCACA+AGG + tig0017334:31249-31268 Msa1361090:CDS 30.0%
! TTTAATGATTTGGATCAGAG+TGG + tig0017334:31358-31377 Msa1361090:intron 30.0%
! TGGAATTAGATTCCTCTTTT+GGG - tig0017334:31434-31453 None:intergenic 30.0%
! TTGGAATTAGATTCCTCTTT+TGG - tig0017334:31435-31454 None:intergenic 30.0%
AAAGAGGAATCTAATTCCAA+TGG + tig0017334:31435-31454 Msa1361090:CDS 30.0%
TTCACTAAGATGGAATCATT+CGG + tig0017334:31571-31590 Msa1361090:CDS 30.0%
TTATGAATATGACAGGTTAG+TGG + tig0017334:31703-31722 Msa1361090:intron 30.0%
TATGAATATGACAGGTTAGT+GGG + tig0017334:31704-31723 Msa1361090:intron 30.0%
ACATTGCAGTACATGTTATA+AGG + tig0017334:31837-31856 Msa1361090:intron 30.0%
TTATAAGGTTGCAACTGTAA+GGG + tig0017334:31852-31871 Msa1361090:intron 30.0%
! CTAAATGTTCGTTAGTCTAA+TGG + tig0017334:32178-32197 Msa1361090:intron 30.0%
! GAAGTTAACCTTCTGAATTT+TGG - tig0017334:32313-32332 None:intergenic 30.0%
! AGAAGGTTAACTTCTTTTCA+TGG + tig0017334:32319-32338 Msa1361090:intron 30.0%
AAGATATTCATTCTGGCATT+TGG + tig0017334:32386-32405 Msa1361090:intron 30.0%
!! TTTGACAAACATTTCTAGCA+TGG - tig0017334:32599-32618 None:intergenic 30.0%
! GCTATGCATTTATACTGTTT+TGG - tig0017334:32671-32690 None:intergenic 30.0%
GAAAGAATGATGAAAAAGGA+AGG + tig0017334:32765-32784 Msa1361090:three_prime_UTR 30.0%
!! GAATTTTGAAGGAAAAAAGG+GGG + tig0017334:32834-32853 Msa1361090:three_prime_UTR 30.0%
! TAAGCTATTGAATGTTGACT+CGG - tig0017334:32985-33004 None:intergenic 30.0%
ACAGATAATAAAGGAACCGA+AGG + tig0017334:30571-30590 Msa1361090:five_prime_UTR 35.0%
AGAAGCTGATCTTAAAGGAA+TGG + tig0017334:30610-30629 Msa1361090:exon 35.0%
TTATGATGTTCCACGGTTAT+GGG - tig0017334:30795-30814 None:intergenic 35.0%
TTTATGATGTTCCACGGTTA+TGG - tig0017334:30796-30815 None:intergenic 35.0%
TGATGAGGCACAAGAAATAA+TGG - tig0017334:30871-30890 None:intergenic 35.0%
!! ATCTACTGACTCAAATGCAT+TGG + tig0017334:31068-31087 Msa1361090:CDS 35.0%
TGTTACTACTACATCGGAAA+TGG + tig0017334:31140-31159 Msa1361090:intron 35.0%
GATTCCATCTTAGTGAAATC+TGG - tig0017334:31568-31587 None:intergenic 35.0%
GTTATAAGGTTGCAACTGTA+AGG + tig0017334:31851-31870 Msa1361090:intron 35.0%
! GCTAGTTTGCCTTGAAAAAA+CGG + tig0017334:31980-31999 Msa1361090:intron 35.0%
!!! AATCCTGAACCGTTTTTTCA+AGG - tig0017334:31992-32011 None:intergenic 35.0%
GCTATTGGGATGTTAACAAA+TGG + tig0017334:32070-32089 Msa1361090:CDS 35.0%
GTATGCTTCCAAAATTCAGA+AGG + tig0017334:32302-32321 Msa1361090:CDS 35.0%
ACAGCATAGTTCATTGAAGT+AGG + tig0017334:32419-32438 Msa1361090:intron 35.0%
GAAGTGAATACAAGTACCTT+CGG + tig0017334:32698-32717 Msa1361090:three_prime_UTR 35.0%
! GTTGATTCATCTTAAGACTG+TGG - tig0017334:32952-32971 None:intergenic 35.0%
TTCTTATATTCGAGACTGGA+GGG - tig0017334:33047-33066 None:intergenic 35.0%
TTTCTTATATTCGAGACTGG+AGG - tig0017334:33048-33067 None:intergenic 35.0%
GAGAGAGAAGCTGATCTTAA+AGG + tig0017334:30605-30624 Msa1361090:five_prime_UTR 40.0%
AAGGAATGGCATCCATTTCA+TGG + tig0017334:30624-30643 Msa1361090:exon 40.0%
TAGACAGCTGAACCATGAAA+TGG - tig0017334:30639-30658 None:intergenic 40.0%
ATACAAATGAGGAAGGTGAG+TGG - tig0017334:30704-30723 None:intergenic 40.0%
TTTATCATCTCCCATAACCG+TGG + tig0017334:30782-30801 Msa1361090:CDS 40.0%
! TCAAATGCATTGGCACTCAA+TGG + tig0017334:31078-31097 Msa1361090:CDS 40.0%
TTTGGATCAGAGTGGCAAAT+TGG + tig0017334:31366-31385 Msa1361090:intron 40.0%
AACTGCTTTCTACCCAAAAG+AGG + tig0017334:31419-31438 Msa1361090:CDS 40.0%
!! TGAAGAATTTGCTGACACTC+TGG + tig0017334:31600-31619 Msa1361090:CDS 40.0%
! AATATGACAGGTTAGTGGGT+TGG + tig0017334:31708-31727 Msa1361090:intron 40.0%
TTGCCTTGAAAAAACGGTTC+AGG + tig0017334:31986-32005 Msa1361090:intron 40.0%
TTGGGATGTTAACAAATGGC+TGG + tig0017334:32074-32093 Msa1361090:CDS 40.0%
AACAGACTGTATACAGTGAC+AGG + tig0017334:32100-32119 Msa1361090:CDS 40.0%
AGCTTCCACTTGAAATTTGC+AGG + tig0017334:32469-32488 Msa1361090:intron 40.0%
AACTGCCTGCAAATTTCAAG+TGG - tig0017334:32477-32496 None:intergenic 40.0%
CAAGGGTAATGTTTAACCGA+AGG - tig0017334:32717-32736 None:intergenic 40.0%
TCGGTTAAACATTACCCTTG+TGG + tig0017334:32717-32736 Msa1361090:three_prime_UTR 40.0%
!! GGTTTGTTGCTTACGGAAAA+TGG + tig0017334:32738-32757 Msa1361090:three_prime_UTR 40.0%
GTTGCTTACGGAAAATGGAT+AGG + tig0017334:32743-32762 Msa1361090:three_prime_UTR 40.0%
TGAAGGAAAAAAGGGGGAAA+AGG + tig0017334:32840-32859 Msa1361090:three_prime_UTR 40.0%
GAAGGAAAAAAGGGGGAAAA+GGG + tig0017334:32841-32860 Msa1361090:three_prime_UTR 40.0%
TTCAACTTACGTTGCGATGT+AGG - tig0017334:32928-32947 None:intergenic 40.0%
!! CTATTGAATGTTGACTCGGT+TGG - tig0017334:32981-33000 None:intergenic 40.0%
TAAAGGAACCGAAGGATGAG+AGG + tig0017334:30579-30598 Msa1361090:five_prime_UTR 45.0%
ATCAGCTCATCCTCACAAGA+AGG + tig0017334:30985-31004 Msa1361090:intron 45.0%
ATCCTCACAAGAAGGACTTG+CGG + tig0017334:30993-31012 Msa1361090:CDS 45.0%
AGATGAAGCTGCAATTGCTG+CGG - tig0017334:31052-31071 None:intergenic 45.0%
TCAGAGTGGCAAATTGGAAC+AGG + tig0017334:31372-31391 Msa1361090:intron 45.0%
ATTGGAACAGGAGAATCTGC+AGG + tig0017334:31384-31403 Msa1361090:CDS 45.0%
TTGGAACAGGAGAATCTGCA+GGG + tig0017334:31385-31404 Msa1361090:CDS 45.0%
GGGTCCAGATTTCACTAAGA+TGG + tig0017334:31561-31580 Msa1361090:CDS 45.0%
AGAAGCTGGAAAAAACCACC+TGG + tig0017334:31733-31752 Msa1361090:CDS 45.0%
GAGTATACACTGCAAAGTCC+TGG + tig0017334:32022-32041 Msa1361090:CDS 45.0%
ACTGTATACAGTGACAGGAC+AGG + tig0017334:32105-32124 Msa1361090:CDS 45.0%
CCGTAAGCAACAAACCACAA+GGG - tig0017334:32734-32753 None:intergenic 45.0%
!! CCCTTGTGGTTTGTTGCTTA+CGG + tig0017334:32731-32750 Msa1361090:three_prime_UTR 45.0%
TCCGTAAGCAACAAACCACA+AGG - tig0017334:32735-32754 None:intergenic 45.0%
GCGATGTAGGATCTTCTTGA+TGG - tig0017334:32915-32934 None:intergenic 45.0%
CTCTCTCTCCTCTCATCCTT+CGG - tig0017334:30590-30609 None:intergenic 50.0%
ATGAGGAAGGTGAGTGGTGA+AGG - tig0017334:30698-30717 None:intergenic 50.0%
AACCGCAAGTCCTTCTTGTG+AGG - tig0017334:30998-31017 None:intergenic 50.0%
AGCGTTGTGATCACAGGAGT+GGG + tig0017334:31541-31560 Msa1361090:CDS 50.0%
!! TTAGTGGGTTGGACAGAAGC+TGG + tig0017334:31719-31738 Msa1361090:CDS 50.0%
CTGGAAAAAACCACCTGGTG+TGG + tig0017334:31738-31757 Msa1361090:CDS 50.0%
ATGAGTTTAGCAGCCACACC+AGG - tig0017334:31754-31773 None:intergenic 50.0%
TACACTGCAAAGTCCTGGTG+AGG + tig0017334:32027-32046 Msa1361090:CDS 50.0%
ACACTGCAAAGTCCTGGTGA+GGG + tig0017334:32028-32047 Msa1361090:CDS 50.0%
TTTCCTGCCGACATGCAGTA+TGG + tig0017334:32261-32280 Msa1361090:intron 50.0%
TTCCTGCCGACATGCAGTAT+GGG + tig0017334:32262-32281 Msa1361090:intron 50.0%
CTCTTCCCCATACTGCATGT+CGG - tig0017334:32271-32290 None:intergenic 50.0%
AAGGGATTACTCCATCCGTC+AGG + tig0017334:32859-32878 Msa1361090:three_prime_UTR 50.0%
AGGGATTACTCCATCCGTCA+GGG + tig0017334:32860-32879 Msa1361090:three_prime_UTR 50.0%
CTCTGTAAACGCATCCCTGA+CGG - tig0017334:32877-32896 None:intergenic 50.0%
TGGTGAAGGACCTTTGTCGC+CGG - tig0017334:30684-30703 None:intergenic 55.0%
TGAAGCTGCAATTGCTGCGG+TGG - tig0017334:31049-31068 None:intergenic 55.0%
GTGTGTCGCAGATGTGACTG+AGG + tig0017334:31194-31213 Msa1361090:intron 55.0%
! GCAGTGAGCGTTGTGATCAC+AGG + tig0017334:31535-31554 Msa1361090:intron 55.0%
! GAGCGTTGTGATCACAGGAG+TGG + tig0017334:31540-31559 Msa1361090:CDS 55.0%
AGTTTAGCAGCCACACCAGG+TGG - tig0017334:31751-31770 None:intergenic 55.0%
AGATGTTTGCGACCCTCACC+AGG - tig0017334:32043-32062 None:intergenic 55.0%
CTGCAGTGTCTGTGTGTGTC+AGG + tig0017334:32142-32161 Msa1361090:intron 55.0%
TCCTGCCGACATGCAGTATG+GGG + tig0017334:32263-32282 Msa1361090:intron 55.0%
CGACATGCAGTATGGGGAAG+AGG + tig0017334:32269-32288 Msa1361090:intron 55.0%
GTAAACGCATCCCTGACGGA+TGG - tig0017334:32873-32892 None:intergenic 55.0%
CGTCAGGGATGCGTTTACAG+AGG + tig0017334:32875-32894 Msa1361090:three_prime_UTR 55.0%
ATCCGACCAACTGCCACTGC+CGG + tig0017334:30662-30681 Msa1361090:CDS 60.0%
TCCCCATACTGCATGTCGGC+AGG - tig0017334:32267-32286 None:intergenic 60.0%
TTGTCGCCGGCAGTGGCAGT+TGG - tig0017334:30671-30690 None:intergenic 65.0%
ACTGCCACTGCCGGCGACAA+AGG + tig0017334:30671-30690 Msa1361090:CDS 65.0%
AGGACCTTTGTCGCCGGCAG+TGG - tig0017334:30678-30697 None:intergenic 65.0%
CGCCGGCAGTGGCAGTTGGT+CGG - tig0017334:30667-30686 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0017334 gene 30558 33079 30558 ID=Msa1361090;Name=Msa1361090
tig0017334 mRNA 30558 33079 30558 ID=Msa1361090-mRNA-1;Parent=Msa1361090;Name=Msa1361090-mRNA-1;_AED=0.10;_eAED=0.10;_QI=71|1|1|1|0.77|0.8|10|562|241
tig0017334 exon 30558 30692 30558 ID=Msa1361090-mRNA-1:exon:12245;Parent=Msa1361090-mRNA-1
tig0017334 exon 30781 30835 30781 ID=Msa1361090-mRNA-1:exon:12246;Parent=Msa1361090-mRNA-1
tig0017334 exon 30990 31099 30990 ID=Msa1361090-mRNA-1:exon:12247;Parent=Msa1361090-mRNA-1
tig0017334 exon 31205 31270 31205 ID=Msa1361090-mRNA-1:exon:12248;Parent=Msa1361090-mRNA-1
tig0017334 exon 31376 31456 31376 ID=Msa1361090-mRNA-1:exon:12249;Parent=Msa1361090-mRNA-1
tig0017334 exon 31539 31621 31539 ID=Msa1361090-mRNA-1:exon:12250;Parent=Msa1361090-mRNA-1
tig0017334 exon 31718 31793 31718 ID=Msa1361090-mRNA-1:exon:12251;Parent=Msa1361090-mRNA-1
tig0017334 exon 32008 32126 32008 ID=Msa1361090-mRNA-1:exon:12252;Parent=Msa1361090-mRNA-1
tig0017334 exon 32279 32323 32279 ID=Msa1361090-mRNA-1:exon:12253;Parent=Msa1361090-mRNA-1
tig0017334 exon 32491 33079 32491 ID=Msa1361090-mRNA-1:exon:12254;Parent=Msa1361090-mRNA-1
tig0017334 five_prime_UTR 30558 30628 30558 ID=Msa1361090-mRNA-1:five_prime_utr;Parent=Msa1361090-mRNA-1
tig0017334 CDS 30629 30692 30629 ID=Msa1361090-mRNA-1:cds;Parent=Msa1361090-mRNA-1
tig0017334 CDS 30781 30835 30781 ID=Msa1361090-mRNA-1:cds;Parent=Msa1361090-mRNA-1
tig0017334 CDS 30990 31099 30990 ID=Msa1361090-mRNA-1:cds;Parent=Msa1361090-mRNA-1
tig0017334 CDS 31205 31270 31205 ID=Msa1361090-mRNA-1:cds;Parent=Msa1361090-mRNA-1
tig0017334 CDS 31376 31456 31376 ID=Msa1361090-mRNA-1:cds;Parent=Msa1361090-mRNA-1
tig0017334 CDS 31539 31621 31539 ID=Msa1361090-mRNA-1:cds;Parent=Msa1361090-mRNA-1
tig0017334 CDS 31718 31793 31718 ID=Msa1361090-mRNA-1:cds;Parent=Msa1361090-mRNA-1
tig0017334 CDS 32008 32126 32008 ID=Msa1361090-mRNA-1:cds;Parent=Msa1361090-mRNA-1
tig0017334 CDS 32279 32323 32279 ID=Msa1361090-mRNA-1:cds;Parent=Msa1361090-mRNA-1
tig0017334 CDS 32491 32517 32491 ID=Msa1361090-mRNA-1:cds;Parent=Msa1361090-mRNA-1
tig0017334 three_prime_UTR 32518 33079 32518 ID=Msa1361090-mRNA-1:three_prime_utr;Parent=Msa1361090-mRNA-1
Gene Sequence

>Msa1361090

ATGGCATCCATTTCATGGTTCAGCTGTCTACACATCCGACCAACTGCCACTGCCGGCGACAAAGGTTTATCATCTCCCATAACCGTGGAACATCATAAAACAAGACCACAAAATTTACTCTCATCCTCACAAGAAGGACTTGCGGTTAATAGAAGACAACTGATTCTTTACACATCCACCGCAGCAATTGCAGCTTCATCTACTGACTCAAATGCATTGGCACTCAATGATGTGACTGAGGATTTCAGTATCTACACTGATGATGAGAACAAGTTCAAGATAGATATTCCACAAGAGTGGCAAATTGGAACAGGAGAATCTGCAGGGTTCAAATCATTAACTGCTTTCTACCCAAAAGAGGAATCTAATTCCAATGTGAGCGTTGTGATCACAGGAGTGGGTCCAGATTTCACTAAGATGGAATCATTCGGCAAAGTTGAAGAATTTGCTGACACTCTGGTTAGTGGGTTGGACAGAAGCTGGAAAAAACCACCTGGTGTGGCTGCTAAACTCATAGATTGTAAATCATCTAAAGGATTTTATTTCATTGAGTATACACTGCAAAGTCCTGGTGAGGGTCGCAAACATCTATATTCAGCTATTGGGATGTTAACAAATGGCTGGTATAACAGACTGTATACAGTGACAGGACAGTATGGGGAAGAGGAAACAGACAAGTATGCTTCCAAAATTCAGAAGGCAGTTCGATCGTTTAAGTTCATATAA

Protein sequence

>Msa1361090

MASISWFSCLHIRPTATAGDKGLSSPITVEHHKTRPQNLLSSSQEGLAVNRRQLILYTSTAAIAASSTDSNALALNDVTEDFSIYTDDENKFKIDIPQEWQIGTGESAGFKSLTAFYPKEESNSNVSVVITGVGPDFTKMESFGKVEEFADTLVSGLDRSWKKPPGVAAKLIDCKSSKGFYFIEYTLQSPGEGRKHLYSAIGMLTNGWYNRLYTVTGQYGEEETDKYASKIQKAVRSFKFI*