AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0479790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479790 MtrunA17_Chr3g0144291 98.340 241 4 0 1 241 1 241 0.0 496
Msa0479790 MtrunA17_Chr6g0463171 95.775 71 3 0 148 218 9 79 1.02e-45 147
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479790 AT1G76450.1 56.048 248 101 4 1 241 1 247 4.00e-94 276

Find 86 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAATTAGATTCCTCTTT+TGG 0.168788 3_3:-84964664 None:intergenic
GAAGTTAACCTTCTGAATTT+TGG 0.181807 3_3:-84965542 None:intergenic
GAGAGAGAAGCTGATCTTAA+AGG 0.213636 3_3:+84963837 Msa0479790:five_prime_UTR
GGTTTGTTGCTTACGGAAAA+TGG 0.261563 3_3:+84965992 Msa0479790:three_prime_UTR
GCTATGCATTTATACTGTTT+TGG 0.274479 3_3:-84965900 None:intergenic
AAACATCTATATTCAGCTAT+TGG 0.276276 3_3:+84965287 Msa0479790:CDS
TTTATGATGTTCCACGGTTA+TGG 0.286936 3_3:-84964025 None:intergenic
TAAGAAAATATTCATTCTTC+AGG 0.297077 3_3:+84966314 Msa0479790:three_prime_UTR
TTTGGATCAGAGTGGCAAAT+TGG 0.331290 3_3:+84964598 Msa0479790:intron
AAGGAATGGCATCCATTTCA+TGG 0.346543 3_3:+84963856 Msa0479790:exon
ATAGGAAAGAATGATGAAAA+AGG 0.359605 3_3:+84966015 Msa0479790:three_prime_UTR
CTCTCTCTCCTCTCATCCTT+CGG 0.362366 3_3:-84963819 None:intergenic
AACATCTATATTCAGCTATT+GGG 0.365323 3_3:+84965288 Msa0479790:CDS
GATTCCATCTTAGTGAAATC+TGG 0.369687 3_3:-84964797 None:intergenic
CCCTTGTGGTTTGTTGCTTA+CGG 0.388072 3_3:+84965985 Msa0479790:three_prime_UTR
TGTAATTAAACAGATAATAA+AGG 0.393288 3_3:+84963794 Msa0479790:five_prime_UTR
TTATGATGTTCCACGGTTAT+GGG 0.420864 3_3:-84964024 None:intergenic
AGGACCTTTGTCGCCGGCAG+TGG 0.426577 3_3:-84963907 None:intergenic
AACTGCTTTCTACCCAAAAG+AGG 0.462382 3_3:+84964651 Msa0479790:CDS
AAGGGATTACTCCATCCGTC+AGG 0.475210 3_3:+84966112 Msa0479790:three_prime_UTR
TCAGAGTGGCAAATTGGAAC+AGG 0.480833 3_3:+84964604 Msa0479790:intron
GGGTCCAGATTTCACTAAGA+TGG 0.482457 3_3:+84964793 Msa0479790:CDS
TTTGACAAACATTTCTAGCA+TGG 0.489768 3_3:-84965828 None:intergenic
TTAGTGGGTTGGACAGAAGC+TGG 0.491375 3_3:+84964951 Msa0479790:CDS
ATCCGACCAACTGCCACTGC+CGG 0.492198 3_3:+84963894 Msa0479790:CDS
GAAGTGAATACAAGTACCTT+CGG 0.494219 3_3:+84965952 Msa0479790:intron
CTACATGCAGTATGGGGAAG+AGG 0.496030 3_3:+84965501 Msa0479790:intron
GCTATTGGGATGTTAACAAA+TGG 0.498373 3_3:+84965302 Msa0479790:CDS
GCGATGTAGGATCTTCTTGA+TGG 0.498530 3_3:-84966165 None:intergenic
TTCACTAAGATGGAATCATT+CGG 0.500644 3_3:+84964803 Msa0479790:CDS
TTCAACTTACGTTGCGATGT+AGG 0.502534 3_3:-84966178 None:intergenic
TATGAATATGACAGGTTAGT+GGG 0.511045 3_3:+84964936 Msa0479790:intron
GTTGCTTACGGAAAATGGAT+AGG 0.512749 3_3:+84965997 Msa0479790:three_prime_UTR
CGCCGGCAGTGGCAGTTGGT+CGG 0.516601 3_3:-84963896 None:intergenic
TTCTTATATTCGAGACTGGA+GGG 0.518993 3_3:-84966297 None:intergenic
ATCAGCTCATCCTCACAAGA+AGG 0.525102 3_3:+84964217 Msa0479790:intron
AACAGACTGTATACAGTGAC+AGG 0.526154 3_3:+84965332 Msa0479790:CDS
ATAGATTGTAAATCATCTAA+AGG 0.527370 3_3:+84965004 Msa0479790:CDS
TAGACAGCTGAACCATGAAA+TGG 0.530629 3_3:-84963868 None:intergenic
TTATGAATATGACAGGTTAG+TGG 0.533288 3_3:+84964935 Msa0479790:intron
ATTGGAACAGGAGAATCTGC+AGG 0.533573 3_3:+84964616 Msa0479790:CDS
TTGTCGCCGGCAGTGGCAGT+TGG 0.534455 3_3:-84963900 None:intergenic
GAGTATACACTGCAAAGTCC+TGG 0.539737 3_3:+84965254 Msa0479790:CDS
ACTGCCACTGCCGGCGACAA+AGG 0.540659 3_3:+84963903 Msa0479790:CDS
CTATTGAATGTTGACTCGGT+TGG 0.547055 3_3:-84966231 None:intergenic
ATCTACTGACTCAAATGCAT+TGG 0.548024 3_3:+84964300 Msa0479790:CDS
TTGGGATGTTAACAAATGGC+TGG 0.548862 3_3:+84965306 Msa0479790:CDS
CTCTGTAAACGCATCCCTGA+CGG 0.553705 3_3:-84966127 None:intergenic
AGATGTTTGCGACCCTCACC+AGG 0.558500 3_3:-84965272 None:intergenic
TCAAATGCATTGGCACTCAA+TGG 0.559351 3_3:+84964310 Msa0479790:CDS
AGAAGCTGATCTTAAAGGAA+TGG 0.566145 3_3:+84963842 Msa0479790:exon
TGAAGAATTTGCTGACACTC+TGG 0.569769 3_3:+84964832 Msa0479790:CDS
GTTGATTCATCTTAAGACTG+TGG 0.571726 3_3:-84966202 None:intergenic
TGGTGAAGGACCTTTGTCGC+CGG 0.574688 3_3:-84963913 None:intergenic
TTTCTTATATTCGAGACTGG+AGG 0.577897 3_3:-84966298 None:intergenic
AATATGACAGGTTAGTGGGT+TGG 0.579569 3_3:+84964940 Msa0479790:intron
AAAGAGGAATCTAATTCCAA+TGG 0.583004 3_3:+84964667 Msa0479790:CDS
GCAGTGAGCGTTGTGATCAC+AGG 0.585258 3_3:+84964767 Msa0479790:intron
ATGAGTTTAGCAGCCACACC+AGG 0.586123 3_3:-84964983 None:intergenic
TAAAGGAACCGAAGGATGAG+AGG 0.588015 3_3:+84963811 Msa0479790:five_prime_UTR
TAAGCTATTGAATGTTGACT+CGG 0.592204 3_3:-84966235 None:intergenic
TGAAGCTGCAATTGCTGCGG+TGG 0.592489 3_3:-84964278 None:intergenic
TACACTGCAAAGTCCTGGTG+AGG 0.595200 3_3:+84965259 Msa0479790:CDS
GTATGCTTCCAAAATTCAGA+AGG 0.596845 3_3:+84965534 Msa0479790:CDS
AGCGTTGTGATCACAGGAGT+GGG 0.598156 3_3:+84964773 Msa0479790:CDS
ACAGATAATAAAGGAACCGA+AGG 0.598767 3_3:+84963803 Msa0479790:five_prime_UTR
AACCGCAAGTCCTTCTTGTG+AGG 0.610452 3_3:-84964227 None:intergenic
ACTGTATACAGTGACAGGAC+AGG 0.614449 3_3:+84965337 Msa0479790:CDS
AATGTAATGAAAACATCATG+AGG 0.616777 3_3:-84965801 None:intergenic
GAGCGTTGTGATCACAGGAG+TGG 0.623369 3_3:+84964772 Msa0479790:CDS
GTAAACGCATCCCTGACGGA+TGG 0.625811 3_3:-84966123 None:intergenic
ATGTAATGAAAACATCATGA+GGG 0.634868 3_3:-84965800 None:intergenic
TCCGTAAGCAACAAACCACA+AGG 0.635610 3_3:-84965986 None:intergenic
AGGGATTACTCCATCCGTCA+GGG 0.639880 3_3:+84966113 Msa0479790:three_prime_UTR
TCGGTTAAACATTACCCTTG+TGG 0.650079 3_3:+84965971 Msa0479790:three_prime_UTR
CAAGGGTAATGTTTAACCGA+AGG 0.654529 3_3:-84965968 None:intergenic
CGTCAGGGATGCGTTTACAG+AGG 0.673387 3_3:+84966128 Msa0479790:three_prime_UTR
TTGGAACAGGAGAATCTGCA+GGG 0.677070 3_3:+84964617 Msa0479790:CDS
ATCCTCACAAGAAGGACTTG+CGG 0.678162 3_3:+84964225 Msa0479790:CDS
AGTTTAGCAGCCACACCAGG+TGG 0.683789 3_3:-84964980 None:intergenic
TTTATCATCTCCCATAACCG+TGG 0.686526 3_3:+84964014 Msa0479790:CDS
ACACTGCAAAGTCCTGGTGA+GGG 0.688636 3_3:+84965260 Msa0479790:CDS
TTCAAGATAGATATTCCACA+AGG 0.719102 3_3:+84964481 Msa0479790:CDS
CCGTAAGCAACAAACCACAA+GGG 0.722121 3_3:-84965985 None:intergenic
AGATGAAGCTGCAATTGCTG+CGG 0.735552 3_3:-84964281 None:intergenic
GTGTGTCGCAGATGTGACTG+AGG 0.758838 3_3:+84964426 Msa0479790:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTAATTAAACAGATAATAA+AGG + chr3_3:84963794-84963813 Msa0479790:five_prime_UTR 15.0%
!!! ACTTTTTTGTTTTAATGATT+TGG + chr3_3:84964580-84964599 Msa0479790:intron 15.0%
!! TAATATATTATGAATATGAC+AGG + chr3_3:84964928-84964947 Msa0479790:intron 15.0%
!!! ATAGTAAATATCATACTTTT+AGG - chr3_3:84965856-84965875 None:intergenic 15.0%
!! AAAAAAAAAAAAGAGAAAGT+AGG + chr3_3:84966044-84966063 Msa0479790:three_prime_UTR 15.0%
!!! TATATAGTTTTGAATTTTGA+AGG + chr3_3:84966076-84966095 Msa0479790:three_prime_UTR 15.0%
!!! ATACTGTTCAATATTTCTAA+TGG + chr3_3:84963967-84963986 Msa0479790:intron 20.0%
!!! TTTTCTTACAGTAAATTTTG+TGG - chr3_3:84964057-84964076 None:intergenic 20.0%
!! ATAGATTGTAAATCATCTAA+AGG + chr3_3:84965004-84965023 Msa0479790:CDS 20.0%
!!! TACTAAGCAACATTATTTTT+TGG - chr3_3:84965458-84965477 None:intergenic 20.0%
!! TAAAATATTTGACAGAACAA+AGG + chr3_3:84965583-84965602 Msa0479790:intron 20.0%
!!! TTTGAATTTTGAAGGAAAAA+AGG + chr3_3:84966084-84966103 Msa0479790:three_prime_UTR 20.0%
!!! TTGAATTTTGAAGGAAAAAA+GGG + chr3_3:84966085-84966104 Msa0479790:three_prime_UTR 20.0%
! ATTTAGTATACAAATGAGGA+AGG - chr3_3:84963943-84963962 None:intergenic 25.0%
! GCAAATTTAGTATACAAATG+AGG - chr3_3:84963947-84963966 None:intergenic 25.0%
! TTGTATTGTTACTACTACAT+CGG + chr3_3:84964366-84964385 Msa0479790:intron 25.0%
! TTTCAATTAAATTCACCTTG+TGG - chr3_3:84964499-84964518 None:intergenic 25.0%
! GGTGAATTTAATTGAAAGTT+TGG + chr3_3:84964502-84964521 Msa0479790:intron 25.0%
!! TTTGAGTTTGATTATACCAT+TGG - chr3_3:84964686-84964705 None:intergenic 25.0%
! GATTCATAACTATTATTTGC+TGG + chr3_3:84964871-84964890 Msa0479790:intron 25.0%
! AAGCAAAATAGTTATGAATC+TGG - chr3_3:84964909-84964928 None:intergenic 25.0%
! AGGGAAAGAAAATATGTTAT+AGG + chr3_3:84965103-84965122 Msa0479790:intron 25.0%
! ACTTCTCAAAACTGAAATTA+TGG + chr3_3:84965167-84965186 Msa0479790:intron 25.0%
! CTTCTCAAAACTGAAATTAT+GGG + chr3_3:84965168-84965187 Msa0479790:intron 25.0%
! AAACATCTATATTCAGCTAT+TGG + chr3_3:84965287-84965306 Msa0479790:CDS 25.0%
! AACATCTATATTCAGCTATT+GGG + chr3_3:84965288-84965307 Msa0479790:CDS 25.0%
! ATACTCAAAGATATTCATTC+TGG + chr3_3:84965611-84965630 Msa0479790:intron 25.0%
!! TTTTTCTTTGCTTTCTTTCA+TGG + chr3_3:84965774-84965793 Msa0479790:three_prime_UTR 25.0%
!! TTTTCTTTGCTTTCTTTCAT+GGG + chr3_3:84965775-84965794 Msa0479790:three_prime_UTR 25.0%
! ATGTAATGAAAACATCATGA+GGG - chr3_3:84965803-84965822 None:intergenic 25.0%
! AATGTAATGAAAACATCATG+AGG - chr3_3:84965804-84965823 None:intergenic 25.0%
!!! TTTTGGTTTATCAGTTTTGA+AGG - chr3_3:84965886-84965905 None:intergenic 25.0%
! ATAGGAAAGAATGATGAAAA+AGG + chr3_3:84966015-84966034 Msa0479790:three_prime_UTR 25.0%
!!! TGAATTTTGAAGGAAAAAAG+GGG + chr3_3:84966086-84966105 Msa0479790:three_prime_UTR 25.0%
!! TATTTTCTTATATTCGAGAC+TGG - chr3_3:84966304-84966323 None:intergenic 25.0%
!!! TTTGCGTAAGTTTTTTGTTC+AGG + chr3_3:84963991-84964010 Msa0479790:intron 30.0%
!!! TCTTGTTTTATGATGTTCCA+CGG - chr3_3:84964034-84964053 None:intergenic 30.0%
TTCAATGTTTAAGCATGATG+AGG - chr3_3:84964118-84964137 None:intergenic 30.0%
TTCAAGATAGATATTCCACA+AGG + chr3_3:84964481-84964500 Msa0479790:CDS 30.0%
! TTTAATGATTTGGATCAGAG+TGG + chr3_3:84964590-84964609 Msa0479790:intron 30.0%
! TGGAATTAGATTCCTCTTTT+GGG - chr3_3:84964666-84964685 None:intergenic 30.0%
! TTGGAATTAGATTCCTCTTT+TGG - chr3_3:84964667-84964686 None:intergenic 30.0%
AAAGAGGAATCTAATTCCAA+TGG + chr3_3:84964667-84964686 Msa0479790:CDS 30.0%
TTCACTAAGATGGAATCATT+CGG + chr3_3:84964803-84964822 Msa0479790:CDS 30.0%
TTATGAATATGACAGGTTAG+TGG + chr3_3:84964935-84964954 Msa0479790:intron 30.0%
TATGAATATGACAGGTTAGT+GGG + chr3_3:84964936-84964955 Msa0479790:intron 30.0%
ACATTGCAGTACATGTTATA+AGG + chr3_3:84965069-84965088 Msa0479790:intron 30.0%
TTATAAGGTTGCAACTGTAA+GGG + chr3_3:84965084-84965103 Msa0479790:intron 30.0%
! CTAAATGTTCGTTAGTCTAA+TGG + chr3_3:84965410-84965429 Msa0479790:intron 30.0%
! GAAGTTAACCTTCTGAATTT+TGG - chr3_3:84965545-84965564 None:intergenic 30.0%
! AGAAGGTTAACTTCTTTTCA+TGG + chr3_3:84965551-84965570 Msa0479790:intron 30.0%
AAGATATTCATTCTGGCATT+TGG + chr3_3:84965618-84965637 Msa0479790:intron 30.0%
!! TTTGACAAACATTTCTAGCA+TGG - chr3_3:84965831-84965850 None:intergenic 30.0%
! GCTATGCATTTATACTGTTT+TGG - chr3_3:84965903-84965922 None:intergenic 30.0%
CATAGCACTAATTGATGTAA+TGG + chr3_3:84965917-84965936 Msa0479790:intron 30.0%
GAAAGAATGATGAAAAAGGA+AGG + chr3_3:84966019-84966038 Msa0479790:three_prime_UTR 30.0%
!! GAATTTTGAAGGAAAAAAGG+GGG + chr3_3:84966087-84966106 Msa0479790:three_prime_UTR 30.0%
! TAAGCTATTGAATGTTGACT+CGG - chr3_3:84966238-84966257 None:intergenic 30.0%
ACAGATAATAAAGGAACCGA+AGG + chr3_3:84963803-84963822 Msa0479790:five_prime_UTR 35.0%
AGAAGCTGATCTTAAAGGAA+TGG + chr3_3:84963842-84963861 Msa0479790:exon 35.0%
TTATGATGTTCCACGGTTAT+GGG - chr3_3:84964027-84964046 None:intergenic 35.0%
TTTATGATGTTCCACGGTTA+TGG - chr3_3:84964028-84964047 None:intergenic 35.0%
TGATGAGGCACAAGAAATAA+TGG - chr3_3:84964103-84964122 None:intergenic 35.0%
!! ATCTACTGACTCAAATGCAT+TGG + chr3_3:84964300-84964319 Msa0479790:CDS 35.0%
TGTTACTACTACATCGGAAA+TGG + chr3_3:84964372-84964391 Msa0479790:intron 35.0%
GATTCCATCTTAGTGAAATC+TGG - chr3_3:84964800-84964819 None:intergenic 35.0%
GTTATAAGGTTGCAACTGTA+AGG + chr3_3:84965083-84965102 Msa0479790:intron 35.0%
! GCTAGTTTGCCTTGAAAAAA+CGG + chr3_3:84965212-84965231 Msa0479790:intron 35.0%
!!! AATCCTGAACCGTTTTTTCA+AGG - chr3_3:84965224-84965243 None:intergenic 35.0%
GCTATTGGGATGTTAACAAA+TGG + chr3_3:84965302-84965321 Msa0479790:CDS 35.0%
GTATGCTTCCAAAATTCAGA+AGG + chr3_3:84965534-84965553 Msa0479790:CDS 35.0%
ACAGCATAGTTCATTGAAGT+AGG + chr3_3:84965651-84965670 Msa0479790:intron 35.0%
GAAGTGAATACAAGTACCTT+CGG + chr3_3:84965952-84965971 Msa0479790:intron 35.0%
! GTTGATTCATCTTAAGACTG+TGG - chr3_3:84966205-84966224 None:intergenic 35.0%
TTCTTATATTCGAGACTGGA+GGG - chr3_3:84966300-84966319 None:intergenic 35.0%
TTTCTTATATTCGAGACTGG+AGG - chr3_3:84966301-84966320 None:intergenic 35.0%
GAGAGAGAAGCTGATCTTAA+AGG + chr3_3:84963837-84963856 Msa0479790:five_prime_UTR 40.0%
AAGGAATGGCATCCATTTCA+TGG + chr3_3:84963856-84963875 Msa0479790:exon 40.0%
TAGACAGCTGAACCATGAAA+TGG - chr3_3:84963871-84963890 None:intergenic 40.0%
ATACAAATGAGGAAGGTGAG+TGG - chr3_3:84963936-84963955 None:intergenic 40.0%
TTTATCATCTCCCATAACCG+TGG + chr3_3:84964014-84964033 Msa0479790:CDS 40.0%
! TCAAATGCATTGGCACTCAA+TGG + chr3_3:84964310-84964329 Msa0479790:CDS 40.0%
TTTGGATCAGAGTGGCAAAT+TGG + chr3_3:84964598-84964617 Msa0479790:intron 40.0%
AACTGCTTTCTACCCAAAAG+AGG + chr3_3:84964651-84964670 Msa0479790:CDS 40.0%
!! TGAAGAATTTGCTGACACTC+TGG + chr3_3:84964832-84964851 Msa0479790:CDS 40.0%
! AATATGACAGGTTAGTGGGT+TGG + chr3_3:84964940-84964959 Msa0479790:intron 40.0%
TTGCCTTGAAAAAACGGTTC+AGG + chr3_3:84965218-84965237 Msa0479790:intron 40.0%
TTGGGATGTTAACAAATGGC+TGG + chr3_3:84965306-84965325 Msa0479790:CDS 40.0%
AACAGACTGTATACAGTGAC+AGG + chr3_3:84965332-84965351 Msa0479790:CDS 40.0%
AGCTTCCACTTGAAATTTGC+AGG + chr3_3:84965701-84965720 Msa0479790:intron 40.0%
AACTGCCTGCAAATTTCAAG+TGG - chr3_3:84965709-84965728 None:intergenic 40.0%
CAAGGGTAATGTTTAACCGA+AGG - chr3_3:84965971-84965990 None:intergenic 40.0%
TCGGTTAAACATTACCCTTG+TGG + chr3_3:84965971-84965990 Msa0479790:three_prime_UTR 40.0%
!! GGTTTGTTGCTTACGGAAAA+TGG + chr3_3:84965992-84966011 Msa0479790:three_prime_UTR 40.0%
GTTGCTTACGGAAAATGGAT+AGG + chr3_3:84965997-84966016 Msa0479790:three_prime_UTR 40.0%
TGAAGGAAAAAAGGGGGAAA+AGG + chr3_3:84966093-84966112 Msa0479790:three_prime_UTR 40.0%
GAAGGAAAAAAGGGGGAAAA+GGG + chr3_3:84966094-84966113 Msa0479790:three_prime_UTR 40.0%
TTCAACTTACGTTGCGATGT+AGG - chr3_3:84966181-84966200 None:intergenic 40.0%
!! CTATTGAATGTTGACTCGGT+TGG - chr3_3:84966234-84966253 None:intergenic 40.0%
TAAAGGAACCGAAGGATGAG+AGG + chr3_3:84963811-84963830 Msa0479790:five_prime_UTR 45.0%
ATCAGCTCATCCTCACAAGA+AGG + chr3_3:84964217-84964236 Msa0479790:intron 45.0%
ATCCTCACAAGAAGGACTTG+CGG + chr3_3:84964225-84964244 Msa0479790:CDS 45.0%
AGATGAAGCTGCAATTGCTG+CGG - chr3_3:84964284-84964303 None:intergenic 45.0%
TCAGAGTGGCAAATTGGAAC+AGG + chr3_3:84964604-84964623 Msa0479790:intron 45.0%
ATTGGAACAGGAGAATCTGC+AGG + chr3_3:84964616-84964635 Msa0479790:CDS 45.0%
TTGGAACAGGAGAATCTGCA+GGG + chr3_3:84964617-84964636 Msa0479790:CDS 45.0%
GGGTCCAGATTTCACTAAGA+TGG + chr3_3:84964793-84964812 Msa0479790:CDS 45.0%
AGAAGCTGGAAAAAACCACC+TGG + chr3_3:84964965-84964984 Msa0479790:CDS 45.0%
GAGTATACACTGCAAAGTCC+TGG + chr3_3:84965254-84965273 Msa0479790:CDS 45.0%
ACTGTATACAGTGACAGGAC+AGG + chr3_3:84965337-84965356 Msa0479790:CDS 45.0%
TTTCCTGCCTACATGCAGTA+TGG + chr3_3:84965493-84965512 Msa0479790:intron 45.0%
TTCCTGCCTACATGCAGTAT+GGG + chr3_3:84965494-84965513 Msa0479790:intron 45.0%
CCGTAAGCAACAAACCACAA+GGG - chr3_3:84965988-84966007 None:intergenic 45.0%
!! CCCTTGTGGTTTGTTGCTTA+CGG + chr3_3:84965985-84966004 Msa0479790:three_prime_UTR 45.0%
TCCGTAAGCAACAAACCACA+AGG - chr3_3:84965989-84966008 None:intergenic 45.0%
GCGATGTAGGATCTTCTTGA+TGG - chr3_3:84966168-84966187 None:intergenic 45.0%
CTCTCTCTCCTCTCATCCTT+CGG - chr3_3:84963822-84963841 None:intergenic 50.0%
ATGAGGAAGGTGAGTGGTGA+AGG - chr3_3:84963930-84963949 None:intergenic 50.0%
AACCGCAAGTCCTTCTTGTG+AGG - chr3_3:84964230-84964249 None:intergenic 50.0%
AGCGTTGTGATCACAGGAGT+GGG + chr3_3:84964773-84964792 Msa0479790:CDS 50.0%
!! TTAGTGGGTTGGACAGAAGC+TGG + chr3_3:84964951-84964970 Msa0479790:CDS 50.0%
CTGGAAAAAACCACCTGGTG+TGG + chr3_3:84964970-84964989 Msa0479790:CDS 50.0%
ATGAGTTTAGCAGCCACACC+AGG - chr3_3:84964986-84965005 None:intergenic 50.0%
TACACTGCAAAGTCCTGGTG+AGG + chr3_3:84965259-84965278 Msa0479790:CDS 50.0%
ACACTGCAAAGTCCTGGTGA+GGG + chr3_3:84965260-84965279 Msa0479790:CDS 50.0%
TCCTGCCTACATGCAGTATG+GGG + chr3_3:84965495-84965514 Msa0479790:intron 50.0%
CTCTTCCCCATACTGCATGT+AGG - chr3_3:84965503-84965522 None:intergenic 50.0%
CTACATGCAGTATGGGGAAG+AGG + chr3_3:84965501-84965520 Msa0479790:intron 50.0%
AAGGGATTACTCCATCCGTC+AGG + chr3_3:84966112-84966131 Msa0479790:three_prime_UTR 50.0%
AGGGATTACTCCATCCGTCA+GGG + chr3_3:84966113-84966132 Msa0479790:three_prime_UTR 50.0%
CTCTGTAAACGCATCCCTGA+CGG - chr3_3:84966130-84966149 None:intergenic 50.0%
TGGTGAAGGACCTTTGTCGC+CGG - chr3_3:84963916-84963935 None:intergenic 55.0%
TGAAGCTGCAATTGCTGCGG+TGG - chr3_3:84964281-84964300 None:intergenic 55.0%
GTGTGTCGCAGATGTGACTG+AGG + chr3_3:84964426-84964445 Msa0479790:intron 55.0%
! GCAGTGAGCGTTGTGATCAC+AGG + chr3_3:84964767-84964786 Msa0479790:intron 55.0%
! GAGCGTTGTGATCACAGGAG+TGG + chr3_3:84964772-84964791 Msa0479790:CDS 55.0%
AGTTTAGCAGCCACACCAGG+TGG - chr3_3:84964983-84965002 None:intergenic 55.0%
AGATGTTTGCGACCCTCACC+AGG - chr3_3:84965275-84965294 None:intergenic 55.0%
CTGCAGTGTCTGTGTGTGTC+AGG + chr3_3:84965374-84965393 Msa0479790:intron 55.0%
TCCCCATACTGCATGTAGGC+AGG - chr3_3:84965499-84965518 None:intergenic 55.0%
GTAAACGCATCCCTGACGGA+TGG - chr3_3:84966126-84966145 None:intergenic 55.0%
CGTCAGGGATGCGTTTACAG+AGG + chr3_3:84966128-84966147 Msa0479790:three_prime_UTR 55.0%
ATCCGACCAACTGCCACTGC+CGG + chr3_3:84963894-84963913 Msa0479790:CDS 60.0%
TTGTCGCCGGCAGTGGCAGT+TGG - chr3_3:84963903-84963922 None:intergenic 65.0%
ACTGCCACTGCCGGCGACAA+AGG + chr3_3:84963903-84963922 Msa0479790:CDS 65.0%
AGGACCTTTGTCGCCGGCAG+TGG - chr3_3:84963910-84963929 None:intergenic 65.0%
CGCCGGCAGTGGCAGTTGGT+CGG - chr3_3:84963899-84963918 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 84963790 84966333 84963790 ID=Msa0479790;Name=Msa0479790
chr3_3 mRNA 84963790 84966333 84963790 ID=Msa0479790-mRNA-1;Parent=Msa0479790;Name=Msa0479790-mRNA-1;_AED=0.10;_eAED=0.10;_QI=71|1|1|1|0.7|0.72|11|562|241
chr3_3 exon 84963790 84963924 84963790 ID=Msa0479790-mRNA-1:exon:24189;Parent=Msa0479790-mRNA-1
chr3_3 exon 84964013 84964067 84964013 ID=Msa0479790-mRNA-1:exon:24190;Parent=Msa0479790-mRNA-1
chr3_3 exon 84964222 84964331 84964222 ID=Msa0479790-mRNA-1:exon:24191;Parent=Msa0479790-mRNA-1
chr3_3 exon 84964437 84964502 84964437 ID=Msa0479790-mRNA-1:exon:24192;Parent=Msa0479790-mRNA-1
chr3_3 exon 84964608 84964688 84964608 ID=Msa0479790-mRNA-1:exon:24193;Parent=Msa0479790-mRNA-1
chr3_3 exon 84964771 84964853 84964771 ID=Msa0479790-mRNA-1:exon:24194;Parent=Msa0479790-mRNA-1
chr3_3 exon 84964950 84965025 84964950 ID=Msa0479790-mRNA-1:exon:24195;Parent=Msa0479790-mRNA-1
chr3_3 exon 84965240 84965358 84965240 ID=Msa0479790-mRNA-1:exon:24196;Parent=Msa0479790-mRNA-1
chr3_3 exon 84965511 84965555 84965511 ID=Msa0479790-mRNA-1:exon:24197;Parent=Msa0479790-mRNA-1
chr3_3 exon 84965723 84965932 84965723 ID=Msa0479790-mRNA-1:exon:24198;Parent=Msa0479790-mRNA-1
chr3_3 exon 84965955 84966333 84965955 ID=Msa0479790-mRNA-1:exon:24199;Parent=Msa0479790-mRNA-1
chr3_3 five_prime_UTR 84963790 84963860 84963790 ID=Msa0479790-mRNA-1:five_prime_utr;Parent=Msa0479790-mRNA-1
chr3_3 CDS 84963861 84963924 84963861 ID=Msa0479790-mRNA-1:cds;Parent=Msa0479790-mRNA-1
chr3_3 CDS 84964013 84964067 84964013 ID=Msa0479790-mRNA-1:cds;Parent=Msa0479790-mRNA-1
chr3_3 CDS 84964222 84964331 84964222 ID=Msa0479790-mRNA-1:cds;Parent=Msa0479790-mRNA-1
chr3_3 CDS 84964437 84964502 84964437 ID=Msa0479790-mRNA-1:cds;Parent=Msa0479790-mRNA-1
chr3_3 CDS 84964608 84964688 84964608 ID=Msa0479790-mRNA-1:cds;Parent=Msa0479790-mRNA-1
chr3_3 CDS 84964771 84964853 84964771 ID=Msa0479790-mRNA-1:cds;Parent=Msa0479790-mRNA-1
chr3_3 CDS 84964950 84965025 84964950 ID=Msa0479790-mRNA-1:cds;Parent=Msa0479790-mRNA-1
chr3_3 CDS 84965240 84965358 84965240 ID=Msa0479790-mRNA-1:cds;Parent=Msa0479790-mRNA-1
chr3_3 CDS 84965511 84965555 84965511 ID=Msa0479790-mRNA-1:cds;Parent=Msa0479790-mRNA-1
chr3_3 CDS 84965723 84965749 84965723 ID=Msa0479790-mRNA-1:cds;Parent=Msa0479790-mRNA-1
chr3_3 three_prime_UTR 84965750 84965932 84965750 ID=Msa0479790-mRNA-1:three_prime_utr;Parent=Msa0479790-mRNA-1
chr3_3 three_prime_UTR 84965955 84966333 84965955 ID=Msa0479790-mRNA-1:three_prime_utr;Parent=Msa0479790-mRNA-1
Gene Sequence

>Msa0479790

ATGGCATCCATTTCATGGTTCAGCTGTCTACACATCCGACCAACTGCCACTGCCGGCGACAAAGGTTTATCATCTCCCATAACCGTGGAACATCATAAAACAAGACCACAAAATTTACTCTCATCCTCACAAGAAGGACTTGCGGTTAATAGAAGACAACTGATTCTTTACACATCCACCGCAGCAATTGCAGCTTCATCTACTGACTCAAATGCATTGGCACTCAATGATGTGACTGAGGATTTCAGTATCTACACTGATGATGAGAACAAGTTCAAGATAGATATTCCACAAGAGTGGCAAATTGGAACAGGAGAATCTGCAGGGTTCAAATCATTAACTGCTTTCTACCCAAAAGAGGAATCTAATTCCAATGTGAGCGTTGTGATCACAGGAGTGGGTCCAGATTTCACTAAGATGGAATCATTCGGCAAAGTTGAAGAATTTGCTGACACTCTGGTTAGTGGGTTGGACAGAAGCTGGAAAAAACCACCTGGTGTGGCTGCTAAACTCATAGATTGTAAATCATCTAAAGGATTTTATTTCATTGAGTATACACTGCAAAGTCCTGGTGAGGGTCGCAAACATCTATATTCAGCTATTGGGATGTTAACAAATGGCTGGTATAACAGACTGTATACAGTGACAGGACAGTATGGGGAAGAGGAAACAGACAAGTATGCTTCCAAAATTCAGAAGGCAGTTCGATCGTTTAAGTTCATATAA

Protein sequence

>Msa0479790

MASISWFSCLHIRPTATAGDKGLSSPITVEHHKTRPQNLLSSSQEGLAVNRRQLILYTSTAAIAASSTDSNALALNDVTEDFSIYTDDENKFKIDIPQEWQIGTGESAGFKSLTAFYPKEESNSNVSVVITGVGPDFTKMESFGKVEEFADTLVSGLDRSWKKPPGVAAKLIDCKSSKGFYFIEYTLQSPGEGRKHLYSAIGMLTNGWYNRLYTVTGQYGEEETDKYASKIQKAVRSFKFI*