AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0386390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0386390 MtrunA17_Chr3g0144291 98.340 241 4 0 28 268 1 241 0.0 496
Msa0386390 MtrunA17_Chr6g0463171 95.775 71 3 0 175 245 9 79 1.70e-45 148
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0386390 AT1G76450.1 56.048 248 101 4 28 268 1 247 9.70e-94 276

Find 86 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAATTAGATTCCTCTTT+TGG 0.168788 3_1:-90153034 None:intergenic
GAAGTTAACCTTCTGAATTT+TGG 0.181807 3_1:-90153907 None:intergenic
GAGAGAGAAGCTGATCTTAA+AGG 0.213636 3_1:+90152204 Msa0386390:CDS
GGTTTGTTGCTTACGGAAAA+TGG 0.261563 3_1:+90154357 Msa0386390:three_prime_UTR
GCTATGCATTTATACTGTTT+TGG 0.274479 3_1:-90154265 None:intergenic
AAACATCTATATTCAGCTAT+TGG 0.276276 3_1:+90153652 Msa0386390:CDS
TTTATGATGTTCCACGGTTA+TGG 0.286936 3_1:-90152392 None:intergenic
TAAGAAAATATTCATTCTTC+AGG 0.297077 3_1:+90154679 Msa0386390:three_prime_UTR
TTTGGATCAGAGTGGCAAAT+TGG 0.331290 3_1:+90152968 Msa0386390:intron
AAGGAATGGCATCCATTTCA+TGG 0.346543 3_1:+90152223 Msa0386390:CDS
ATAGGAAAGAATGATGAAAA+AGG 0.359605 3_1:+90154380 Msa0386390:three_prime_UTR
CTCTCTCTCCTCTCATCCTT+CGG 0.362366 3_1:-90152186 None:intergenic
AACATCTATATTCAGCTATT+GGG 0.365323 3_1:+90153653 Msa0386390:CDS
TAATGAGTTGATTCATCTTA+AGG 0.369174 3_1:-90154573 None:intergenic
GATTCCATCTTAGTGAAATC+TGG 0.369687 3_1:-90153167 None:intergenic
CCCTTGTGGTTTGTTGCTTA+CGG 0.388072 3_1:+90154350 Msa0386390:three_prime_UTR
TGTAATTAAACAGATAATAA+AGG 0.393288 3_1:+90152161 Msa0386390:CDS
TTATGATGTTCCACGGTTAT+GGG 0.420864 3_1:-90152391 None:intergenic
AGGACCTTTGTCGCCGGCAG+TGG 0.426577 3_1:-90152274 None:intergenic
GGGATTACTCCATCAGTGTC+AGG 0.443914 3_1:+90154477 Msa0386390:three_prime_UTR
AACTGCTTTCTACCCAAAAG+AGG 0.462382 3_1:+90153021 Msa0386390:CDS
TCAGAGTGGCAAATTGGAAC+AGG 0.480833 3_1:+90152974 Msa0386390:intron
GGGTCCAGATTTCACTAAGA+TGG 0.482457 3_1:+90153163 Msa0386390:CDS
TTTGACAAACATTTCTAGCA+TGG 0.489768 3_1:-90154193 None:intergenic
TTAGTGGGTTGGACAGAAGC+TGG 0.491375 3_1:+90153316 Msa0386390:CDS
ATCCGACCAACTGCCACTGC+CGG 0.492198 3_1:+90152261 Msa0386390:CDS
GTTGATTCATCTTAAGGCTG+TGG 0.493499 3_1:-90154567 None:intergenic
GAAGTGAATACAAGTACCTT+CGG 0.494219 3_1:+90154317 Msa0386390:intron
CTACATGCAGTATGGGGAAG+AGG 0.496030 3_1:+90153866 Msa0386390:intron
GCTATTGGGATGTTAACAAA+TGG 0.498373 3_1:+90153667 Msa0386390:CDS
GCGATGTAGGATCTTCTTGA+TGG 0.498530 3_1:-90154530 None:intergenic
TTCACTAAGATGGAATCATT+CGG 0.500644 3_1:+90153173 Msa0386390:CDS
TTCAACTTACGTTGCGATGT+AGG 0.502534 3_1:-90154543 None:intergenic
TATGAATATGACAGGTTAGT+GGG 0.511045 3_1:+90153301 Msa0386390:intron
GTTGCTTACGGAAAATGGAT+AGG 0.512749 3_1:+90154362 Msa0386390:three_prime_UTR
CGCCGGCAGTGGCAGTTGGT+CGG 0.516601 3_1:-90152263 None:intergenic
TTCTTATATTCGAGACTGGA+GGG 0.518993 3_1:-90154662 None:intergenic
ATCAGCTCATCCTCACAAGA+AGG 0.525102 3_1:+90152584 Msa0386390:intron
AACAGACTGTATACAGTGAC+AGG 0.526154 3_1:+90153697 Msa0386390:CDS
ATAGATTGTAAATCATCTAA+AGG 0.527370 3_1:+90153369 Msa0386390:CDS
TAGACAGCTGAACCATGAAA+TGG 0.530629 3_1:-90152235 None:intergenic
ATTGGAACAGGAGAATCTGC+AGG 0.533573 3_1:+90152986 Msa0386390:CDS
TTGTCGCCGGCAGTGGCAGT+TGG 0.534455 3_1:-90152267 None:intergenic
GAGTATACACTGCAAAGTCC+TGG 0.539737 3_1:+90153619 Msa0386390:CDS
ACTGCCACTGCCGGCGACAA+AGG 0.540659 3_1:+90152270 Msa0386390:CDS
ATATGAATATGACAGGTTAG+TGG 0.543159 3_1:+90153300 Msa0386390:intron
CTATTGAATGTTGACTCGGT+TGG 0.547055 3_1:-90154596 None:intergenic
ATCTACTGACTCAAATGCAT+TGG 0.548024 3_1:+90152667 Msa0386390:CDS
TTGGGATGTTAACAAATGGC+TGG 0.548862 3_1:+90153671 Msa0386390:CDS
AGATGTTTGCGACCCTCACC+AGG 0.558500 3_1:-90153637 None:intergenic
TCAAATGCATTGGCACTCAA+TGG 0.559351 3_1:+90152677 Msa0386390:CDS
AAACGCATCCCTGACACTGA+TGG 0.561171 3_1:-90154486 None:intergenic
AGAAGCTGATCTTAAAGGAA+TGG 0.566145 3_1:+90152209 Msa0386390:CDS
TGAAGAATTTGCTGACACTC+TGG 0.569769 3_1:+90153202 Msa0386390:CDS
TGGTGAAGGACCTTTGTCGC+CGG 0.574688 3_1:-90152280 None:intergenic
TTTCTTATATTCGAGACTGG+AGG 0.577897 3_1:-90154663 None:intergenic
AATATGACAGGTTAGTGGGT+TGG 0.579569 3_1:+90153305 Msa0386390:intron
AAAGAGGAATCTAATTCCAA+TGG 0.583004 3_1:+90153037 Msa0386390:CDS
GCAGTGAGCGTTGTGATCAC+AGG 0.585258 3_1:+90153137 Msa0386390:intron
ATGAGTTTAGCAGCCACACC+AGG 0.586123 3_1:-90153348 None:intergenic
TAAAGGAACCGAAGGATGAG+AGG 0.588015 3_1:+90152178 Msa0386390:CDS
TAAGCTATTGAATGTTGACT+CGG 0.592204 3_1:-90154600 None:intergenic
TGAAGCTGCAATTGCTGCGG+TGG 0.592489 3_1:-90152645 None:intergenic
TACACTGCAAAGTCCTGGTG+AGG 0.595200 3_1:+90153624 Msa0386390:CDS
GTATGCTTCCAAAATTCAGA+AGG 0.596845 3_1:+90153899 Msa0386390:CDS
AGCGTTGTGATCACAGGAGT+GGG 0.598156 3_1:+90153143 Msa0386390:CDS
ACAGATAATAAAGGAACCGA+AGG 0.598767 3_1:+90152170 Msa0386390:CDS
AACCGCAAGTCCTTCTTGTG+AGG 0.610452 3_1:-90152594 None:intergenic
ACTGTATACAGTGACAGGAC+AGG 0.614449 3_1:+90153702 Msa0386390:CDS
AATGTAATGAAAACATCATG+AGG 0.616777 3_1:-90154166 None:intergenic
GAGCGTTGTGATCACAGGAG+TGG 0.623369 3_1:+90153142 Msa0386390:CDS
GGATTACTCCATCAGTGTCA+GGG 0.630284 3_1:+90154478 Msa0386390:three_prime_UTR
ATGTAATGAAAACATCATGA+GGG 0.634868 3_1:-90154165 None:intergenic
TCCGTAAGCAACAAACCACA+AGG 0.635610 3_1:-90154351 None:intergenic
TCGGTTAAACATTACCCTTG+TGG 0.650079 3_1:+90154336 Msa0386390:three_prime_UTR
CAAGGGTAATGTTTAACCGA+AGG 0.654529 3_1:-90154333 None:intergenic
TTGGAACAGGAGAATCTGCA+GGG 0.677070 3_1:+90152987 Msa0386390:CDS
ATCCTCACAAGAAGGACTTG+CGG 0.678162 3_1:+90152592 Msa0386390:CDS
AGTTTAGCAGCCACACCAGG+TGG 0.683789 3_1:-90153345 None:intergenic
TTTATCATCTCCCATAACCG+TGG 0.686526 3_1:+90152381 Msa0386390:CDS
ACACTGCAAAGTCCTGGTGA+GGG 0.688636 3_1:+90153625 Msa0386390:CDS
TGTCAGGGATGCGTTTACAG+AGG 0.695650 3_1:+90154493 Msa0386390:three_prime_UTR
TTCAAGATAGATATTCCACA+AGG 0.719102 3_1:+90152851 Msa0386390:CDS
CCGTAAGCAACAAACCACAA+GGG 0.722121 3_1:-90154350 None:intergenic
AGATGAAGCTGCAATTGCTG+CGG 0.735552 3_1:-90152648 None:intergenic
GTGTGTCGCAGATGTGACTG+AGG 0.758838 3_1:+90152796 Msa0386390:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTAATTAAACAGATAATAA+AGG + chr3_1:90152161-90152180 Msa0386390:CDS 15.0%
!!! ACTTTTTTGTTTTAATGATT+TGG + chr3_1:90152950-90152969 Msa0386390:intron 15.0%
!!! ATAGTAAATATCATACTTTT+AGG - chr3_1:90154221-90154240 None:intergenic 15.0%
!! AAAAAAAAAAAAGAGAAAGT+AGG + chr3_1:90154407-90154426 Msa0386390:three_prime_UTR 15.0%
!!! TATATAGTTTTGAATTTTGA+AGG + chr3_1:90154439-90154458 Msa0386390:three_prime_UTR 15.0%
!!! ATACTGTTCAATATTTCTAA+TGG + chr3_1:90152334-90152353 Msa0386390:intron 20.0%
!!! TTTTCTTACAGTAAATTTTG+TGG - chr3_1:90152424-90152443 None:intergenic 20.0%
!! ATAGATTGTAAATCATCTAA+AGG + chr3_1:90153369-90153388 Msa0386390:CDS 20.0%
!!! TACTAAGCAACATTATTTTT+TGG - chr3_1:90153823-90153842 None:intergenic 20.0%
!! TAAAATATTTGACAGAACAA+AGG + chr3_1:90153948-90153967 Msa0386390:intron 20.0%
!!! TTTGAATTTTGAAGGAAAAA+AGG + chr3_1:90154447-90154466 Msa0386390:three_prime_UTR 20.0%
!!! TTGAATTTTGAAGGAAAAAA+GGG + chr3_1:90154448-90154467 Msa0386390:three_prime_UTR 20.0%
! ATTTAGTATACAAATGAGGA+AGG - chr3_1:90152310-90152329 None:intergenic 25.0%
! GCAAATTTAGTATACAAATG+AGG - chr3_1:90152314-90152333 None:intergenic 25.0%
! TTGTATTGTTACTACTACAT+CGG + chr3_1:90152736-90152755 Msa0386390:intron 25.0%
! TTTCAATTAAATTCACCTTG+TGG - chr3_1:90152869-90152888 None:intergenic 25.0%
! GGTGAATTTAATTGAAAGTT+TGG + chr3_1:90152872-90152891 Msa0386390:intron 25.0%
!! TTTGAGTTTGATTATACCAT+TGG - chr3_1:90153056-90153075 None:intergenic 25.0%
! GATTCATAACTATTATTTGC+TGG + chr3_1:90153241-90153260 Msa0386390:intron 25.0%
! AAGCAAAATAGTTATGAATC+TGG - chr3_1:90153279-90153298 None:intergenic 25.0%
! TTGCTTAATATGAATATGAC+AGG + chr3_1:90153293-90153312 Msa0386390:intron 25.0%
! AGGGAAAGAAAATATGTTAT+AGG + chr3_1:90153468-90153487 Msa0386390:intron 25.0%
! ACTTCTCAAAACTGAAATTA+TGG + chr3_1:90153532-90153551 Msa0386390:intron 25.0%
! CTTCTCAAAACTGAAATTAT+GGG + chr3_1:90153533-90153552 Msa0386390:intron 25.0%
! AAACATCTATATTCAGCTAT+TGG + chr3_1:90153652-90153671 Msa0386390:CDS 25.0%
! AACATCTATATTCAGCTATT+GGG + chr3_1:90153653-90153672 Msa0386390:CDS 25.0%
! ATACTCAAAGATATTCATTC+TGG + chr3_1:90153976-90153995 Msa0386390:intron 25.0%
!! TTTTTCTTTGCTTTCTTTCA+TGG + chr3_1:90154139-90154158 Msa0386390:three_prime_UTR 25.0%
!! TTTTCTTTGCTTTCTTTCAT+GGG + chr3_1:90154140-90154159 Msa0386390:three_prime_UTR 25.0%
! ATGTAATGAAAACATCATGA+GGG - chr3_1:90154168-90154187 None:intergenic 25.0%
! AATGTAATGAAAACATCATG+AGG - chr3_1:90154169-90154188 None:intergenic 25.0%
!!! TTTTGGTTTATCAGTTTTGA+AGG - chr3_1:90154251-90154270 None:intergenic 25.0%
! ATAGGAAAGAATGATGAAAA+AGG + chr3_1:90154380-90154399 Msa0386390:three_prime_UTR 25.0%
!!! TGAATTTTGAAGGAAAAAAG+GGG + chr3_1:90154449-90154468 Msa0386390:three_prime_UTR 25.0%
!!! TAATGAGTTGATTCATCTTA+AGG - chr3_1:90154576-90154595 None:intergenic 25.0%
!! TATTTTCTTATATTCGAGAC+TGG - chr3_1:90154669-90154688 None:intergenic 25.0%
!!! TTTGCGTAAGTTTTTTGTTC+AGG + chr3_1:90152358-90152377 Msa0386390:intron 30.0%
!!! TCTTGTTTTATGATGTTCCA+CGG - chr3_1:90152401-90152420 None:intergenic 30.0%
TTCAATGTTTAAGCATGATG+AGG - chr3_1:90152485-90152504 None:intergenic 30.0%
TTCAAGATAGATATTCCACA+AGG + chr3_1:90152851-90152870 Msa0386390:CDS 30.0%
! TTTAATGATTTGGATCAGAG+TGG + chr3_1:90152960-90152979 Msa0386390:intron 30.0%
! TGGAATTAGATTCCTCTTTT+GGG - chr3_1:90153036-90153055 None:intergenic 30.0%
! TTGGAATTAGATTCCTCTTT+TGG - chr3_1:90153037-90153056 None:intergenic 30.0%
AAAGAGGAATCTAATTCCAA+TGG + chr3_1:90153037-90153056 Msa0386390:CDS 30.0%
TTCACTAAGATGGAATCATT+CGG + chr3_1:90153173-90153192 Msa0386390:CDS 30.0%
ATATGAATATGACAGGTTAG+TGG + chr3_1:90153300-90153319 Msa0386390:intron 30.0%
TATGAATATGACAGGTTAGT+GGG + chr3_1:90153301-90153320 Msa0386390:intron 30.0%
ACATTGCAGTACATGTTATA+AGG + chr3_1:90153434-90153453 Msa0386390:intron 30.0%
TTATAAGGTTGCAACTGTAA+GGG + chr3_1:90153449-90153468 Msa0386390:intron 30.0%
! CTAAATGTTCGTTAGTCTAA+TGG + chr3_1:90153775-90153794 Msa0386390:intron 30.0%
! GAAGTTAACCTTCTGAATTT+TGG - chr3_1:90153910-90153929 None:intergenic 30.0%
! AGAAGGTTAACTTCTTTTCA+TGG + chr3_1:90153916-90153935 Msa0386390:intron 30.0%
AAGATATTCATTCTGGCATT+TGG + chr3_1:90153983-90154002 Msa0386390:intron 30.0%
!! TTTGACAAACATTTCTAGCA+TGG - chr3_1:90154196-90154215 None:intergenic 30.0%
! GCTATGCATTTATACTGTTT+TGG - chr3_1:90154268-90154287 None:intergenic 30.0%
CATAGCACTAATTGATGTAA+TGG + chr3_1:90154282-90154301 Msa0386390:intron 30.0%
GAAAGAATGATGAAAAAGGA+AGG + chr3_1:90154384-90154403 Msa0386390:three_prime_UTR 30.0%
!! GAATTTTGAAGGAAAAAAGG+GGG + chr3_1:90154450-90154469 Msa0386390:three_prime_UTR 30.0%
! TAAGCTATTGAATGTTGACT+CGG - chr3_1:90154603-90154622 None:intergenic 30.0%
ACAGATAATAAAGGAACCGA+AGG + chr3_1:90152170-90152189 Msa0386390:CDS 35.0%
AGAAGCTGATCTTAAAGGAA+TGG + chr3_1:90152209-90152228 Msa0386390:CDS 35.0%
TTATGATGTTCCACGGTTAT+GGG - chr3_1:90152394-90152413 None:intergenic 35.0%
TTTATGATGTTCCACGGTTA+TGG - chr3_1:90152395-90152414 None:intergenic 35.0%
TGATGAGGCACAAGAAATAA+TGG - chr3_1:90152470-90152489 None:intergenic 35.0%
!! ATCTACTGACTCAAATGCAT+TGG + chr3_1:90152667-90152686 Msa0386390:CDS 35.0%
TGTTACTACTACATCGGAAA+TGG + chr3_1:90152742-90152761 Msa0386390:intron 35.0%
GATTCCATCTTAGTGAAATC+TGG - chr3_1:90153170-90153189 None:intergenic 35.0%
GTTATAAGGTTGCAACTGTA+AGG + chr3_1:90153448-90153467 Msa0386390:intron 35.0%
! GCTAGTTTGCCTTGAAAAAA+CGG + chr3_1:90153577-90153596 Msa0386390:intron 35.0%
!!! AATCCTGAACCGTTTTTTCA+AGG - chr3_1:90153589-90153608 None:intergenic 35.0%
GCTATTGGGATGTTAACAAA+TGG + chr3_1:90153667-90153686 Msa0386390:CDS 35.0%
GTATGCTTCCAAAATTCAGA+AGG + chr3_1:90153899-90153918 Msa0386390:CDS 35.0%
ACAGCATAGTTCATTGAAGT+AGG + chr3_1:90154016-90154035 Msa0386390:intron 35.0%
GAAGTGAATACAAGTACCTT+CGG + chr3_1:90154317-90154336 Msa0386390:intron 35.0%
TTCTTATATTCGAGACTGGA+GGG - chr3_1:90154665-90154684 None:intergenic 35.0%
TTTCTTATATTCGAGACTGG+AGG - chr3_1:90154666-90154685 None:intergenic 35.0%
GAGAGAGAAGCTGATCTTAA+AGG + chr3_1:90152204-90152223 Msa0386390:CDS 40.0%
AAGGAATGGCATCCATTTCA+TGG + chr3_1:90152223-90152242 Msa0386390:CDS 40.0%
TAGACAGCTGAACCATGAAA+TGG - chr3_1:90152238-90152257 None:intergenic 40.0%
ATACAAATGAGGAAGGTGAG+TGG - chr3_1:90152303-90152322 None:intergenic 40.0%
TTTATCATCTCCCATAACCG+TGG + chr3_1:90152381-90152400 Msa0386390:CDS 40.0%
! TCAAATGCATTGGCACTCAA+TGG + chr3_1:90152677-90152696 Msa0386390:CDS 40.0%
TTTGGATCAGAGTGGCAAAT+TGG + chr3_1:90152968-90152987 Msa0386390:intron 40.0%
AACTGCTTTCTACCCAAAAG+AGG + chr3_1:90153021-90153040 Msa0386390:CDS 40.0%
!! TGAAGAATTTGCTGACACTC+TGG + chr3_1:90153202-90153221 Msa0386390:CDS 40.0%
! AATATGACAGGTTAGTGGGT+TGG + chr3_1:90153305-90153324 Msa0386390:intron 40.0%
TTGCCTTGAAAAAACGGTTC+AGG + chr3_1:90153583-90153602 Msa0386390:intron 40.0%
TTGGGATGTTAACAAATGGC+TGG + chr3_1:90153671-90153690 Msa0386390:CDS 40.0%
AACAGACTGTATACAGTGAC+AGG + chr3_1:90153697-90153716 Msa0386390:CDS 40.0%
AGCTTCCACTTGAAATTTGC+AGG + chr3_1:90154066-90154085 Msa0386390:intron 40.0%
AACTGCCTGCAAATTTCAAG+TGG - chr3_1:90154074-90154093 None:intergenic 40.0%
CAAGGGTAATGTTTAACCGA+AGG - chr3_1:90154336-90154355 None:intergenic 40.0%
TCGGTTAAACATTACCCTTG+TGG + chr3_1:90154336-90154355 Msa0386390:three_prime_UTR 40.0%
!! GGTTTGTTGCTTACGGAAAA+TGG + chr3_1:90154357-90154376 Msa0386390:three_prime_UTR 40.0%
GTTGCTTACGGAAAATGGAT+AGG + chr3_1:90154362-90154381 Msa0386390:three_prime_UTR 40.0%
TGAAGGAAAAAAGGGGGAAA+AGG + chr3_1:90154456-90154475 Msa0386390:three_prime_UTR 40.0%
GAAGGAAAAAAGGGGGAAAA+GGG + chr3_1:90154457-90154476 Msa0386390:three_prime_UTR 40.0%
TTCAACTTACGTTGCGATGT+AGG - chr3_1:90154546-90154565 None:intergenic 40.0%
! GTTGATTCATCTTAAGGCTG+TGG - chr3_1:90154570-90154589 None:intergenic 40.0%
!! CTATTGAATGTTGACTCGGT+TGG - chr3_1:90154599-90154618 None:intergenic 40.0%
TAAAGGAACCGAAGGATGAG+AGG + chr3_1:90152178-90152197 Msa0386390:CDS 45.0%
ATCAGCTCATCCTCACAAGA+AGG + chr3_1:90152584-90152603 Msa0386390:intron 45.0%
ATCCTCACAAGAAGGACTTG+CGG + chr3_1:90152592-90152611 Msa0386390:CDS 45.0%
AGATGAAGCTGCAATTGCTG+CGG - chr3_1:90152651-90152670 None:intergenic 45.0%
TCAGAGTGGCAAATTGGAAC+AGG + chr3_1:90152974-90152993 Msa0386390:intron 45.0%
ATTGGAACAGGAGAATCTGC+AGG + chr3_1:90152986-90153005 Msa0386390:CDS 45.0%
TTGGAACAGGAGAATCTGCA+GGG + chr3_1:90152987-90153006 Msa0386390:CDS 45.0%
GGGTCCAGATTTCACTAAGA+TGG + chr3_1:90153163-90153182 Msa0386390:CDS 45.0%
AGAAGCTGGAAAAAACCACC+TGG + chr3_1:90153330-90153349 Msa0386390:CDS 45.0%
GAGTATACACTGCAAAGTCC+TGG + chr3_1:90153619-90153638 Msa0386390:CDS 45.0%
ACTGTATACAGTGACAGGAC+AGG + chr3_1:90153702-90153721 Msa0386390:CDS 45.0%
TTTCCTGCCTACATGCAGTA+TGG + chr3_1:90153858-90153877 Msa0386390:intron 45.0%
TTCCTGCCTACATGCAGTAT+GGG + chr3_1:90153859-90153878 Msa0386390:intron 45.0%
CCGTAAGCAACAAACCACAA+GGG - chr3_1:90154353-90154372 None:intergenic 45.0%
!! CCCTTGTGGTTTGTTGCTTA+CGG + chr3_1:90154350-90154369 Msa0386390:three_prime_UTR 45.0%
TCCGTAAGCAACAAACCACA+AGG - chr3_1:90154354-90154373 None:intergenic 45.0%
GGATTACTCCATCAGTGTCA+GGG + chr3_1:90154478-90154497 Msa0386390:three_prime_UTR 45.0%
GCGATGTAGGATCTTCTTGA+TGG - chr3_1:90154533-90154552 None:intergenic 45.0%
CTCTCTCTCCTCTCATCCTT+CGG - chr3_1:90152189-90152208 None:intergenic 50.0%
ATGAGGAAGGTGAGTGGTGA+AGG - chr3_1:90152297-90152316 None:intergenic 50.0%
AACCGCAAGTCCTTCTTGTG+AGG - chr3_1:90152597-90152616 None:intergenic 50.0%
AGCGTTGTGATCACAGGAGT+GGG + chr3_1:90153143-90153162 Msa0386390:CDS 50.0%
!! TTAGTGGGTTGGACAGAAGC+TGG + chr3_1:90153316-90153335 Msa0386390:CDS 50.0%
CTGGAAAAAACCACCTGGTG+TGG + chr3_1:90153335-90153354 Msa0386390:CDS 50.0%
ATGAGTTTAGCAGCCACACC+AGG - chr3_1:90153351-90153370 None:intergenic 50.0%
TACACTGCAAAGTCCTGGTG+AGG + chr3_1:90153624-90153643 Msa0386390:CDS 50.0%
ACACTGCAAAGTCCTGGTGA+GGG + chr3_1:90153625-90153644 Msa0386390:CDS 50.0%
TCCTGCCTACATGCAGTATG+GGG + chr3_1:90153860-90153879 Msa0386390:intron 50.0%
CTCTTCCCCATACTGCATGT+AGG - chr3_1:90153868-90153887 None:intergenic 50.0%
CTACATGCAGTATGGGGAAG+AGG + chr3_1:90153866-90153885 Msa0386390:intron 50.0%
GGGATTACTCCATCAGTGTC+AGG + chr3_1:90154477-90154496 Msa0386390:three_prime_UTR 50.0%
AAACGCATCCCTGACACTGA+TGG - chr3_1:90154489-90154508 None:intergenic 50.0%
TGTCAGGGATGCGTTTACAG+AGG + chr3_1:90154493-90154512 Msa0386390:three_prime_UTR 50.0%
TGGTGAAGGACCTTTGTCGC+CGG - chr3_1:90152283-90152302 None:intergenic 55.0%
TGAAGCTGCAATTGCTGCGG+TGG - chr3_1:90152648-90152667 None:intergenic 55.0%
GTGTGTCGCAGATGTGACTG+AGG + chr3_1:90152796-90152815 Msa0386390:intron 55.0%
! GCAGTGAGCGTTGTGATCAC+AGG + chr3_1:90153137-90153156 Msa0386390:intron 55.0%
! GAGCGTTGTGATCACAGGAG+TGG + chr3_1:90153142-90153161 Msa0386390:CDS 55.0%
AGTTTAGCAGCCACACCAGG+TGG - chr3_1:90153348-90153367 None:intergenic 55.0%
AGATGTTTGCGACCCTCACC+AGG - chr3_1:90153640-90153659 None:intergenic 55.0%
CTGCAGTGTCTGTGTGTGTC+AGG + chr3_1:90153739-90153758 Msa0386390:intron 55.0%
TCCCCATACTGCATGTAGGC+AGG - chr3_1:90153864-90153883 None:intergenic 55.0%
ATCCGACCAACTGCCACTGC+CGG + chr3_1:90152261-90152280 Msa0386390:CDS 60.0%
TTGTCGCCGGCAGTGGCAGT+TGG - chr3_1:90152270-90152289 None:intergenic 65.0%
ACTGCCACTGCCGGCGACAA+AGG + chr3_1:90152270-90152289 Msa0386390:CDS 65.0%
AGGACCTTTGTCGCCGGCAG+TGG - chr3_1:90152277-90152296 None:intergenic 65.0%
CGCCGGCAGTGGCAGTTGGT+CGG - chr3_1:90152266-90152285 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 90152147 90154698 90152147 ID=Msa0386390;Name=Msa0386390
chr3_1 mRNA 90152147 90154698 90152147 ID=Msa0386390-mRNA-1;Parent=Msa0386390;Name=Msa0386390-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|1|0.90|1|0.7|0.72|11|562|268
chr3_1 exon 90152147 90152291 90152147 ID=Msa0386390-mRNA-1:exon:24789;Parent=Msa0386390-mRNA-1
chr3_1 exon 90152380 90152434 90152380 ID=Msa0386390-mRNA-1:exon:24790;Parent=Msa0386390-mRNA-1
chr3_1 exon 90152589 90152698 90152589 ID=Msa0386390-mRNA-1:exon:24791;Parent=Msa0386390-mRNA-1
chr3_1 exon 90152807 90152872 90152807 ID=Msa0386390-mRNA-1:exon:24792;Parent=Msa0386390-mRNA-1
chr3_1 exon 90152978 90153058 90152978 ID=Msa0386390-mRNA-1:exon:24793;Parent=Msa0386390-mRNA-1
chr3_1 exon 90153141 90153223 90153141 ID=Msa0386390-mRNA-1:exon:24794;Parent=Msa0386390-mRNA-1
chr3_1 exon 90153315 90153390 90153315 ID=Msa0386390-mRNA-1:exon:24795;Parent=Msa0386390-mRNA-1
chr3_1 exon 90153605 90153723 90153605 ID=Msa0386390-mRNA-1:exon:24796;Parent=Msa0386390-mRNA-1
chr3_1 exon 90153876 90153920 90153876 ID=Msa0386390-mRNA-1:exon:24797;Parent=Msa0386390-mRNA-1
chr3_1 exon 90154088 90154297 90154088 ID=Msa0386390-mRNA-1:exon:24798;Parent=Msa0386390-mRNA-1
chr3_1 exon 90154320 90154698 90154320 ID=Msa0386390-mRNA-1:exon:24799;Parent=Msa0386390-mRNA-1
chr3_1 CDS 90152147 90152291 90152147 ID=Msa0386390-mRNA-1:cds;Parent=Msa0386390-mRNA-1
chr3_1 CDS 90152380 90152434 90152380 ID=Msa0386390-mRNA-1:cds;Parent=Msa0386390-mRNA-1
chr3_1 CDS 90152589 90152698 90152589 ID=Msa0386390-mRNA-1:cds;Parent=Msa0386390-mRNA-1
chr3_1 CDS 90152807 90152872 90152807 ID=Msa0386390-mRNA-1:cds;Parent=Msa0386390-mRNA-1
chr3_1 CDS 90152978 90153058 90152978 ID=Msa0386390-mRNA-1:cds;Parent=Msa0386390-mRNA-1
chr3_1 CDS 90153141 90153223 90153141 ID=Msa0386390-mRNA-1:cds;Parent=Msa0386390-mRNA-1
chr3_1 CDS 90153315 90153390 90153315 ID=Msa0386390-mRNA-1:cds;Parent=Msa0386390-mRNA-1
chr3_1 CDS 90153605 90153723 90153605 ID=Msa0386390-mRNA-1:cds;Parent=Msa0386390-mRNA-1
chr3_1 CDS 90153876 90153920 90153876 ID=Msa0386390-mRNA-1:cds;Parent=Msa0386390-mRNA-1
chr3_1 CDS 90154088 90154114 90154088 ID=Msa0386390-mRNA-1:cds;Parent=Msa0386390-mRNA-1
chr3_1 three_prime_UTR 90154115 90154297 90154115 ID=Msa0386390-mRNA-1:three_prime_utr;Parent=Msa0386390-mRNA-1
chr3_1 three_prime_UTR 90154320 90154698 90154320 ID=Msa0386390-mRNA-1:three_prime_utr;Parent=Msa0386390-mRNA-1
Gene Sequence

>Msa0386390

ATGGAGCATACAAGTGTAATTAAACAGATAATAAAGGAACCGAAGGATGAGAGGAGAGAGAGAGAAGCTGATCTTAAAGGAATGGCATCCATTTCATGGTTCAGCTGTCTACACATCCGACCAACTGCCACTGCCGGCGACAAAGGTTTATCATCTCCCATAACCGTGGAACATCATAAAACAAGACCACAAAATTTACTCTCATCCTCACAAGAAGGACTTGCGGTTAATAGAAGACAACTGATTCTTTACACATCCACCGCAGCAATTGCAGCTTCATCTACTGACTCAAATGCATTGGCACTCAATGATGTGACTGAGGATTTCAGTATCTACACTGATGATGAGAACAAGTTCAAGATAGATATTCCACAAGAGTGGCAAATTGGAACAGGAGAATCTGCAGGGTTCAAATCATTAACTGCTTTCTACCCAAAAGAGGAATCTAATTCCAATGTGAGCGTTGTGATCACAGGAGTGGGTCCAGATTTCACTAAGATGGAATCATTCGGCAAAGTTGAAGAATTTGCTGACACTCTGGTTAGTGGGTTGGACAGAAGCTGGAAAAAACCACCTGGTGTGGCTGCTAAACTCATAGATTGTAAATCATCTAAAGGATTTTATTTCATTGAGTATACACTGCAAAGTCCTGGTGAGGGTCGCAAACATCTATATTCAGCTATTGGGATGTTAACAAATGGCTGGTATAACAGACTGTATACAGTGACAGGACAGTATGGGGAAGAGGAAACAGACAAGTATGCTTCCAAAATTCAGAAGGCAGTTCGATCGTTTAAGTTCATATAA

Protein sequence

>Msa0386390

MEHTSVIKQIIKEPKDERREREADLKGMASISWFSCLHIRPTATAGDKGLSSPITVEHHKTRPQNLLSSSQEGLAVNRRQLILYTSTAAIAASSTDSNALALNDVTEDFSIYTDDENKFKIDIPQEWQIGTGESAGFKSLTAFYPKEESNSNVSVVITGVGPDFTKMESFGKVEEFADTLVSGLDRSWKKPPGVAAKLIDCKSSKGFYFIEYTLQSPGEGRKHLYSAIGMLTNGWYNRLYTVTGQYGEEETDKYASKIQKAVRSFKFI*