AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0595780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0595780 MtrunA17_Chr4g0014921 95.714 280 12 0 1 280 1 280 0.0 547
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0595780 AT1G72030.1 47.244 254 111 6 30 276 19 256 4.47e-62 197

Find 62 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTATATGTTCAAATTTA+AGG 0.112410 4_2:-25183674 Msa0595780:CDS
AATTAATATTCTACTTAATT+AGG 0.161235 4_2:+25181933 None:intergenic
CAAGAGTACCTTTACATTTC+AGG 0.191164 4_2:-25182459 Msa0595780:CDS
TAGCTGTCTCCAATGCTTTC+AGG 0.230533 4_2:-25182434 Msa0595780:intron
ATCCACCATGGACAAGTAAT+TGG 0.234201 4_2:-25182004 Msa0595780:CDS
TAACATGCTTATGAGAAATA+TGG 0.235332 4_2:+25183691 None:intergenic
TTTGTTCTTTCAATTCTTTA+AGG 0.237732 4_2:-25183340 Msa0595780:intron
AAGAGCTTATGAAGAAGATT+TGG 0.266902 4_2:-25182075 Msa0595780:CDS
AATCTTCTTCATAAGCTCTT+AGG 0.289976 4_2:+25182078 None:intergenic
AAATAGGCTGAAGTGCTTTC+AGG 0.312360 4_2:-25182812 Msa0595780:intron
TTTGATTGATCTACTGTATA+AGG 0.312581 4_2:-25181684 Msa0595780:three_prime_UTR
AAACTCATTACCCCACAAAT+TGG 0.313360 4_2:+25182106 None:intergenic
ATTGTTTAGGTATGCTTGTT+TGG 0.344763 4_2:-25182583 Msa0595780:intron
TTCAGACAAAATATTAGAAA+TGG 0.378115 4_2:-25181905 Msa0595780:three_prime_UTR
TGAAAATATGAAGCAAAAGT+TGG 0.383459 4_2:-25183484 Msa0595780:CDS
GTTAACTCAGTTTCTACAAT+TGG 0.383586 4_2:+25183798 None:intergenic
AACATGCTTATGAGAAATAT+GGG 0.394470 4_2:+25183692 None:intergenic
TAACAACAAATGTACCTATC+AGG 0.398497 4_2:+25182761 None:intergenic
AGAGCTTATGAAGAAGATTT+GGG 0.419407 4_2:-25182074 Msa0595780:CDS
GTGAATATGGATGGAGGATA+AGG 0.442867 4_2:-25183449 Msa0595780:CDS
AGGTACTCTTGTGCATCAGC+AGG 0.454568 4_2:+25182471 None:intergenic
TTAAATACTCACCTCCTGAT+AGG 0.463612 4_2:-25182775 Msa0595780:intron
AGTTAACATTAACAAACTAT+AGG 0.469382 4_2:-25183782 Msa0595780:five_prime_UTR
GTGACATAATATCCAATTTG+TGG 0.473968 4_2:-25182118 Msa0595780:CDS
TCCACCATGGACAAGTAATT+GGG 0.475166 4_2:-25182003 Msa0595780:CDS
GCGATGTACGAGAGAGGGAC+AGG 0.482429 4_2:-25181562 Msa0595780:three_prime_UTR
GATTCATCAAAGGAACTTGT+AGG 0.482799 4_2:-25182543 Msa0595780:CDS
TGACATAATATCCAATTTGT+GGG 0.486196 4_2:-25182117 Msa0595780:CDS
TGATGACACTGAAATAGTAT+TGG 0.500661 4_2:+25181802 None:intergenic
TGCTGATCAGAAAGTGATGT+TGG 0.505427 4_2:-25183523 Msa0595780:CDS
AAATCATTGAAAAGAGCTAC+AGG 0.509660 4_2:+25183360 None:intergenic
CGAACATTGTACACAAATGC+TGG 0.511040 4_2:-25182047 Msa0595780:CDS
ACAATCAAAGAGAGAGCTCA+AGG 0.518793 4_2:-25181622 Msa0595780:three_prime_UTR
CAGCTATTCCTGAAATGTAA+AGG 0.520945 4_2:+25182451 None:intergenic
ACAATACCAAAATAAAATCA+AGG 0.524160 4_2:-25183835 Msa0595780:five_prime_UTR
GGAGATGTTCAAGCACATCT+TGG 0.525750 4_2:+25182493 None:intergenic
GTTTAGGTATGCTTGTTTGG+TGG 0.529125 4_2:-25182580 Msa0595780:intron
ATCAAAGCAGATGTTGAACT+AGG 0.529797 4_2:+25181701 None:intergenic
CCAACCCAATTACTTGTCCA+TGG 0.539516 4_2:+25181999 None:intergenic
GACGAACACACCGTGTTCAA+CGG 0.545339 4_2:+25181586 None:intergenic
GAGAGGGACAGGAGTGTGGT+AGG 0.565456 4_2:-25181551 Msa0595780:three_prime_UTR
ATCTATGAGAGGATTTAAAG+TGG 0.568996 4_2:+25183867 None:intergenic
GAATGATGAAGATTCATCAA+AGG 0.579526 4_2:-25182553 Msa0595780:CDS
CCATGGACAAGTAATTGGGT+TGG 0.581303 4_2:-25181999 Msa0595780:CDS
GTTATCTTAAAATCTATGAG+AGG 0.595864 4_2:+25183856 None:intergenic
GTGGATCTTTAGACACAAGT+TGG 0.596499 4_2:+25182021 None:intergenic
TGGTGTGTGAATATGGATGG+AGG 0.600815 4_2:-25183455 Msa0595780:CDS
GGTACTCTTGTGCATCAGCA+GGG 0.603876 4_2:+25182472 None:intergenic
TATTTCAGTGTCATCAATCG+TGG 0.604840 4_2:-25181795 Msa0595780:three_prime_UTR
ACATGCTTATGAGAAATATG+GGG 0.619066 4_2:+25183693 None:intergenic
CAATCAAAGAGAGAGCTCAA+GGG 0.619765 4_2:-25181621 Msa0595780:three_prime_UTR
TCTATGAGAGGATTTAAAGT+GGG 0.627506 4_2:+25183868 None:intergenic
ACGAGAGAGGGACAGGAGTG+TGG 0.633519 4_2:-25181555 Msa0595780:three_prime_UTR
AGAAGGAAAAGACGATTGCA+AGG 0.649224 4_2:+25181730 None:intergenic
TGAGAGAGAACCGTTGAACA+CGG 0.659539 4_2:-25181596 Msa0595780:three_prime_UTR
CGTCAGCGATGTACGAGAGA+GGG 0.660720 4_2:-25181567 Msa0595780:three_prime_UTR
ACCCAATTACTTGTCCATGG+TGG 0.661718 4_2:+25182002 None:intergenic
TCGTCAGCGATGTACGAGAG+AGG 0.663828 4_2:-25181568 Msa0595780:three_prime_UTR
CAACAAATGTACCTATCAGG+AGG 0.675327 4_2:+25182764 None:intergenic
CATGCTTATGAGAAATATGG+GGG 0.677909 4_2:+25183694 None:intergenic
GACATAATATCCAATTTGTG+GGG 0.680586 4_2:-25182116 Msa0595780:CDS
TTGTGTCTAAAGATCCACCA+TGG 0.708310 4_2:-25182016 Msa0595780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTCAAAATTTATTATTTTAA+AGG + chr4_2:25182504-25182523 None:intergenic 10.0%
!! AATTAATATTCTACTTAATT+AGG + chr4_2:25183473-25183492 None:intergenic 10.0%
!!! GTCAAAATTTATTATTTTAA+AGG + chr4_2:25182504-25182523 None:intergenic 10.0%
!! AATTAATATTCTACTTAATT+AGG + chr4_2:25183473-25183492 None:intergenic 10.0%
!! ATGTTATATGTTCAAATTTA+AGG - chr4_2:25181729-25181748 Msa0595780:three_prime_UTR 15.0%
!! ATCATTTATCAATATGAAAT+TGG - chr4_2:25182689-25182708 Msa0595780:intron 15.0%
!! TAATGTATATACTATTGTTT+AGG - chr4_2:25182807-25182826 Msa0595780:CDS 15.0%
!!! ATATTCAAGGATTTTTAAAT+AGG - chr4_2:25183027-25183046 Msa0595780:intron 15.0%
!! ATGTTATATGTTCAAATTTA+AGG - chr4_2:25181729-25181748 Msa0595780:three_prime_UTR 15.0%
!! ATCATTTATCAATATGAAAT+TGG - chr4_2:25182689-25182708 Msa0595780:intron 15.0%
!! TAATGTATATACTATTGTTT+AGG - chr4_2:25182807-25182826 Msa0595780:CDS 15.0%
!!! ATATTCAAGGATTTTTAAAT+AGG - chr4_2:25183027-25183046 Msa0595780:intron 15.0%
!! ACAATACCAAAATAAAATCA+AGG - chr4_2:25181568-25181587 Msa0595780:three_prime_UTR 20.0%
!!! TACAATTGGTATTTGATTTT+AGG + chr4_2:25181594-25181613 None:intergenic 20.0%
!! AGTTAACATTAACAAACTAT+AGG - chr4_2:25181621-25181640 Msa0595780:three_prime_UTR 20.0%
!! ACTAAAAAAATGGTAACTTT+AGG + chr4_2:25181660-25181679 None:intergenic 20.0%
!! CCATTCATAAACTAAAAAAA+TGG + chr4_2:25181670-25181689 None:intergenic 20.0%
!!! CCATTTTTTTAGTTTATGAA+TGG - chr4_2:25181667-25181686 Msa0595780:three_prime_UTR 20.0%
!!! ATTCTATAACATGCATTTTT+TGG + chr4_2:25181776-25181795 None:intergenic 20.0%
!! TAAGAAGAAAAAGAAAAACT+TGG - chr4_2:25181795-25181814 Msa0595780:three_prime_UTR 20.0%
!! TTTGTTCTTTCAATTCTTTA+AGG - chr4_2:25182063-25182082 Msa0595780:CDS 20.0%
!! ATTTAAAGGCAAATAAAATG+TGG + chr4_2:25182540-25182559 None:intergenic 20.0%
!!! ACATTTTATTTGCCTTTAAA+TGG - chr4_2:25182539-25182558 Msa0595780:CDS 20.0%
!! AACATTAAACAACCATTTAA+AGG + chr4_2:25182554-25182573 None:intergenic 20.0%
!! TTCAGACAAAATATTAGAAA+TGG - chr4_2:25183498-25183517 Msa0595780:CDS 20.0%
!! ACAATACCAAAATAAAATCA+AGG - chr4_2:25181568-25181587 Msa0595780:three_prime_UTR 20.0%
!!! TACAATTGGTATTTGATTTT+AGG + chr4_2:25181594-25181613 None:intergenic 20.0%
!! AGTTAACATTAACAAACTAT+AGG - chr4_2:25181621-25181640 Msa0595780:three_prime_UTR 20.0%
!! ACTAAAAAAATGGTAACTTT+AGG + chr4_2:25181660-25181679 None:intergenic 20.0%
!! CCATTCATAAACTAAAAAAA+TGG + chr4_2:25181670-25181689 None:intergenic 20.0%
!!! CCATTTTTTTAGTTTATGAA+TGG - chr4_2:25181667-25181686 Msa0595780:three_prime_UTR 20.0%
!!! ATTCTATAACATGCATTTTT+TGG + chr4_2:25181776-25181795 None:intergenic 20.0%
!! TAAGAAGAAAAAGAAAAACT+TGG - chr4_2:25181795-25181814 Msa0595780:three_prime_UTR 20.0%
!! TTTGTTCTTTCAATTCTTTA+AGG - chr4_2:25182063-25182082 Msa0595780:CDS 20.0%
!! ATTTAAAGGCAAATAAAATG+TGG + chr4_2:25182540-25182559 None:intergenic 20.0%
!!! ACATTTTATTTGCCTTTAAA+TGG - chr4_2:25182539-25182558 Msa0595780:CDS 20.0%
!! AACATTAAACAACCATTTAA+AGG + chr4_2:25182554-25182573 None:intergenic 20.0%
!! TTCAGACAAAATATTAGAAA+TGG - chr4_2:25183498-25183517 Msa0595780:CDS 20.0%
! GTTATCTTAAAATCTATGAG+AGG + chr4_2:25181550-25181569 None:intergenic 25.0%
!!! TTTAGGCCTTGATTTTATTT+TGG + chr4_2:25181577-25181596 None:intergenic 25.0%
! AACATGCTTATGAGAAATAT+GGG + chr4_2:25181714-25181733 None:intergenic 25.0%
! TAACATGCTTATGAGAAATA+TGG + chr4_2:25181715-25181734 None:intergenic 25.0%
! TGAAAATATGAAGCAAAAGT+TGG - chr4_2:25181919-25181938 Msa0595780:three_prime_UTR 25.0%
!! AATAGTAACAAGATTTTGAG+TGG - chr4_2:25182176-25182195 Msa0595780:intron 25.0%
! TTCTCTACTTATTGTCTTAA+AGG + chr4_2:25182316-25182335 None:intergenic 25.0%
!!! TTACATCTCTGAAATATTCA+AGG - chr4_2:25183014-25183033 Msa0595780:intron 25.0%
! TAATGAGAGTAACTAATTGA+TGG - chr4_2:25183222-25183241 Msa0595780:intron 25.0%
! TGACATAATATCCAATTTGT+GGG - chr4_2:25183286-25183305 Msa0595780:intron 25.0%
! TTTGATTGATCTACTGTATA+AGG - chr4_2:25183719-25183738 Msa0595780:CDS 25.0%
! GTTATCTTAAAATCTATGAG+AGG + chr4_2:25181550-25181569 None:intergenic 25.0%
!!! TTTAGGCCTTGATTTTATTT+TGG + chr4_2:25181577-25181596 None:intergenic 25.0%
! AACATGCTTATGAGAAATAT+GGG + chr4_2:25181714-25181733 None:intergenic 25.0%
! TAACATGCTTATGAGAAATA+TGG + chr4_2:25181715-25181734 None:intergenic 25.0%
! TGAAAATATGAAGCAAAAGT+TGG - chr4_2:25181919-25181938 Msa0595780:three_prime_UTR 25.0%
!! AATAGTAACAAGATTTTGAG+TGG - chr4_2:25182176-25182195 Msa0595780:intron 25.0%
! TTCTCTACTTATTGTCTTAA+AGG + chr4_2:25182316-25182335 None:intergenic 25.0%
!!! TTACATCTCTGAAATATTCA+AGG - chr4_2:25183014-25183033 Msa0595780:intron 25.0%
! TAATGAGAGTAACTAATTGA+TGG - chr4_2:25183222-25183241 Msa0595780:intron 25.0%
! TGACATAATATCCAATTTGT+GGG - chr4_2:25183286-25183305 Msa0595780:intron 25.0%
! TTTGATTGATCTACTGTATA+AGG - chr4_2:25183719-25183738 Msa0595780:CDS 25.0%
! TCTATGAGAGGATTTAAAGT+GGG + chr4_2:25181538-25181557 None:intergenic 30.0%
ATCTATGAGAGGATTTAAAG+TGG + chr4_2:25181539-25181558 None:intergenic 30.0%
GTTAACTCAGTTTCTACAAT+TGG + chr4_2:25181608-25181627 None:intergenic 30.0%
ACATGCTTATGAGAAATATG+GGG + chr4_2:25181713-25181732 None:intergenic 30.0%
AGAAAAAGAAAAACTTGGAG+TGG - chr4_2:25181800-25181819 Msa0595780:three_prime_UTR 30.0%
!!! GAAGCAAAAGTTGGATTTTT+TGG - chr4_2:25181928-25181947 Msa0595780:exon 30.0%
!!! GATTTTTTGGTGTGTGAATA+TGG - chr4_2:25181941-25181960 Msa0595780:exon 30.0%
GAATGCAGATGAGATAAAAA+TGG - chr4_2:25181988-25182007 Msa0595780:CDS 30.0%
AAATCATTGAAAAGAGCTAC+AGG + chr4_2:25182046-25182065 None:intergenic 30.0%
TTTGATCCAAACTCTCTTTA+TGG - chr4_2:25182218-25182237 Msa0595780:intron 30.0%
ATTTCACCATAAAGAGAGTT+TGG + chr4_2:25182227-25182246 None:intergenic 30.0%
GAAATTGCTTCTCAAATTGT+AGG - chr4_2:25182242-25182261 Msa0595780:intron 30.0%
TTCTAACCACTAGACAATTT+GGG + chr4_2:25182288-25182307 None:intergenic 30.0%
ATTCTAACCACTAGACAATT+TGG + chr4_2:25182289-25182308 None:intergenic 30.0%
AAGACAATAAGTAGAGAATC+TGG - chr4_2:25182318-25182337 Msa0595780:intron 30.0%
AAAGGCAAATAAAATGTGGT+AGG + chr4_2:25182536-25182555 None:intergenic 30.0%
TAACAACAAATGTACCTATC+AGG + chr4_2:25182645-25182664 None:intergenic 30.0%
ATTGTTTAGGTATGCTTGTT+TGG - chr4_2:25182820-25182839 Msa0595780:intron 30.0%
GAATGATGAAGATTCATCAA+AGG - chr4_2:25182850-25182869 Msa0595780:intron 30.0%
!! TTTTAATCACCTGAAAGCAT+TGG + chr4_2:25182981-25183000 None:intergenic 30.0%
! GTTTTCTTTTTGTGTGTTCA+GGG + chr4_2:25183082-25183101 None:intergenic 30.0%
! AGTTTTCTTTTTGTGTGTTC+AGG + chr4_2:25183083-25183102 None:intergenic 30.0%
GTGACATAATATCCAATTTG+TGG - chr4_2:25183285-25183304 Msa0595780:intron 30.0%
GACATAATATCCAATTTGTG+GGG - chr4_2:25183287-25183306 Msa0595780:intron 30.0%
AATCTTCTTCATAAGCTCTT+AGG + chr4_2:25183328-25183347 None:intergenic 30.0%
AAGAGCTTATGAAGAAGATT+TGG - chr4_2:25183328-25183347 Msa0595780:intron 30.0%
AGAGCTTATGAAGAAGATTT+GGG - chr4_2:25183329-25183348 Msa0595780:intron 30.0%
TGATGACACTGAAATAGTAT+TGG + chr4_2:25183604-25183623 None:intergenic 30.0%
! TCTATGAGAGGATTTAAAGT+GGG + chr4_2:25181538-25181557 None:intergenic 30.0%
ATCTATGAGAGGATTTAAAG+TGG + chr4_2:25181539-25181558 None:intergenic 30.0%
GTTAACTCAGTTTCTACAAT+TGG + chr4_2:25181608-25181627 None:intergenic 30.0%
ACATGCTTATGAGAAATATG+GGG + chr4_2:25181713-25181732 None:intergenic 30.0%
AGAAAAAGAAAAACTTGGAG+TGG - chr4_2:25181800-25181819 Msa0595780:three_prime_UTR 30.0%
!!! GAAGCAAAAGTTGGATTTTT+TGG - chr4_2:25181928-25181947 Msa0595780:exon 30.0%
!!! GATTTTTTGGTGTGTGAATA+TGG - chr4_2:25181941-25181960 Msa0595780:exon 30.0%
GAATGCAGATGAGATAAAAA+TGG - chr4_2:25181988-25182007 Msa0595780:CDS 30.0%
AAATCATTGAAAAGAGCTAC+AGG + chr4_2:25182046-25182065 None:intergenic 30.0%
TTTGATCCAAACTCTCTTTA+TGG - chr4_2:25182218-25182237 Msa0595780:intron 30.0%
ATTTCACCATAAAGAGAGTT+TGG + chr4_2:25182227-25182246 None:intergenic 30.0%
GAAATTGCTTCTCAAATTGT+AGG - chr4_2:25182242-25182261 Msa0595780:intron 30.0%
TTCTAACCACTAGACAATTT+GGG + chr4_2:25182288-25182307 None:intergenic 30.0%
ATTCTAACCACTAGACAATT+TGG + chr4_2:25182289-25182308 None:intergenic 30.0%
AAGACAATAAGTAGAGAATC+TGG - chr4_2:25182318-25182337 Msa0595780:intron 30.0%
AAAGGCAAATAAAATGTGGT+AGG + chr4_2:25182536-25182555 None:intergenic 30.0%
TAACAACAAATGTACCTATC+AGG + chr4_2:25182645-25182664 None:intergenic 30.0%
ATTGTTTAGGTATGCTTGTT+TGG - chr4_2:25182820-25182839 Msa0595780:intron 30.0%
GAATGATGAAGATTCATCAA+AGG - chr4_2:25182850-25182869 Msa0595780:intron 30.0%
!! TTTTAATCACCTGAAAGCAT+TGG + chr4_2:25182981-25183000 None:intergenic 30.0%
! GTTTTCTTTTTGTGTGTTCA+GGG + chr4_2:25183082-25183101 None:intergenic 30.0%
! AGTTTTCTTTTTGTGTGTTC+AGG + chr4_2:25183083-25183102 None:intergenic 30.0%
GTGACATAATATCCAATTTG+TGG - chr4_2:25183285-25183304 Msa0595780:intron 30.0%
GACATAATATCCAATTTGTG+GGG - chr4_2:25183287-25183306 Msa0595780:intron 30.0%
AATCTTCTTCATAAGCTCTT+AGG + chr4_2:25183328-25183347 None:intergenic 30.0%
AAGAGCTTATGAAGAAGATT+TGG - chr4_2:25183328-25183347 Msa0595780:intron 30.0%
AGAGCTTATGAAGAAGATTT+GGG - chr4_2:25183329-25183348 Msa0595780:intron 30.0%
TGATGACACTGAAATAGTAT+TGG + chr4_2:25183604-25183623 None:intergenic 30.0%
CATGCTTATGAGAAATATGG+GGG + chr4_2:25181712-25181731 None:intergenic 35.0%
!! TTTTGGTGTGTGAATATGGA+TGG - chr4_2:25181945-25181964 Msa0595780:exon 35.0%
TTGCTTCTCAAATTGTAGGA+TGG - chr4_2:25182246-25182265 Msa0595780:intron 35.0%
! TCTTTTCCCAAATTGTCTAG+TGG - chr4_2:25182279-25182298 Msa0595780:intron 35.0%
! TAAGTAGAGAATCTGGAGTT+CGG - chr4_2:25182325-25182344 Msa0595780:intron 35.0%
AAAATGTGGTAGGTGCTTAA+TGG + chr4_2:25182526-25182545 None:intergenic 35.0%
TATCCATTCTTGACCCAAAT+AGG - chr4_2:25182575-25182594 Msa0595780:CDS 35.0%
TTAAATACTCACCTCCTGAT+AGG - chr4_2:25182628-25182647 Msa0595780:intron 35.0%
GATTCATCAAAGGAACTTGT+AGG - chr4_2:25182860-25182879 Msa0595780:intron 35.0%
!! CAAGAGTACCTTTACATTTC+AGG - chr4_2:25182944-25182963 Msa0595780:intron 35.0%
CAGCTATTCCTGAAATGTAA+AGG + chr4_2:25182955-25182974 None:intergenic 35.0%
GCTAAATCACTAGTTGCTAA+TGG + chr4_2:25183154-25183173 None:intergenic 35.0%
AAACTCATTACCCCACAAAT+TGG + chr4_2:25183300-25183319 None:intergenic 35.0%
TATTTCAGTGTCATCAATCG+TGG - chr4_2:25183608-25183627 Msa0595780:CDS 35.0%
ATCAAAGCAGATGTTGAACT+AGG + chr4_2:25183705-25183724 None:intergenic 35.0%
CATGCTTATGAGAAATATGG+GGG + chr4_2:25181712-25181731 None:intergenic 35.0%
!! TTTTGGTGTGTGAATATGGA+TGG - chr4_2:25181945-25181964 Msa0595780:exon 35.0%
TTGCTTCTCAAATTGTAGGA+TGG - chr4_2:25182246-25182265 Msa0595780:intron 35.0%
! TCTTTTCCCAAATTGTCTAG+TGG - chr4_2:25182279-25182298 Msa0595780:intron 35.0%
! TAAGTAGAGAATCTGGAGTT+CGG - chr4_2:25182325-25182344 Msa0595780:intron 35.0%
AAAATGTGGTAGGTGCTTAA+TGG + chr4_2:25182526-25182545 None:intergenic 35.0%
TATCCATTCTTGACCCAAAT+AGG - chr4_2:25182575-25182594 Msa0595780:CDS 35.0%
TTAAATACTCACCTCCTGAT+AGG - chr4_2:25182628-25182647 Msa0595780:intron 35.0%
GATTCATCAAAGGAACTTGT+AGG - chr4_2:25182860-25182879 Msa0595780:intron 35.0%
!! CAAGAGTACCTTTACATTTC+AGG - chr4_2:25182944-25182963 Msa0595780:intron 35.0%
CAGCTATTCCTGAAATGTAA+AGG + chr4_2:25182955-25182974 None:intergenic 35.0%
GCTAAATCACTAGTTGCTAA+TGG + chr4_2:25183154-25183173 None:intergenic 35.0%
AAACTCATTACCCCACAAAT+TGG + chr4_2:25183300-25183319 None:intergenic 35.0%
TATTTCAGTGTCATCAATCG+TGG - chr4_2:25183608-25183627 Msa0595780:CDS 35.0%
ATCAAAGCAGATGTTGAACT+AGG + chr4_2:25183705-25183724 None:intergenic 35.0%
TGCTGATCAGAAAGTGATGT+TGG - chr4_2:25181880-25181899 Msa0595780:three_prime_UTR 40.0%
GTGAATATGGATGGAGGATA+AGG - chr4_2:25181954-25181973 Msa0595780:CDS 40.0%
!! GAAAGCACTTCAGCCTATTT+GGG + chr4_2:25182591-25182610 None:intergenic 40.0%
!! TGAAAGCACTTCAGCCTATT+TGG + chr4_2:25182592-25182611 None:intergenic 40.0%
! AAATAGGCTGAAGTGCTTTC+AGG - chr4_2:25182591-25182610 Msa0595780:intron 40.0%
CAACAAATGTACCTATCAGG+AGG + chr4_2:25182642-25182661 None:intergenic 40.0%
GTTTAGGTATGCTTGTTTGG+TGG - chr4_2:25182823-25182842 Msa0595780:intron 40.0%
! GAGTAACTAATTGATGGCAC+AGG - chr4_2:25183228-25183247 Msa0595780:intron 40.0%
! TAACTAATTGATGGCACAGG+AGG - chr4_2:25183231-25183250 Msa0595780:intron 40.0%
CGAACATTGTACACAAATGC+TGG - chr4_2:25183356-25183375 Msa0595780:CDS 40.0%
GTGGATCTTTAGACACAAGT+TGG + chr4_2:25183385-25183404 None:intergenic 40.0%
TTGTGTCTAAAGATCCACCA+TGG - chr4_2:25183387-25183406 Msa0595780:CDS 40.0%
ATCCACCATGGACAAGTAAT+TGG - chr4_2:25183399-25183418 Msa0595780:CDS 40.0%
TCCACCATGGACAAGTAATT+GGG - chr4_2:25183400-25183419 Msa0595780:CDS 40.0%
AGAAGGAAAAGACGATTGCA+AGG + chr4_2:25183676-25183695 None:intergenic 40.0%
! GTTGAACTAGGTTTTGCAGA+AGG + chr4_2:25183693-25183712 None:intergenic 40.0%
ACAATCAAAGAGAGAGCTCA+AGG - chr4_2:25183781-25183800 Msa0595780:five_prime_UTR 40.0%
CAATCAAAGAGAGAGCTCAA+GGG - chr4_2:25183782-25183801 Msa0595780:five_prime_UTR 40.0%
TGCTGATCAGAAAGTGATGT+TGG - chr4_2:25181880-25181899 Msa0595780:three_prime_UTR 40.0%
GTGAATATGGATGGAGGATA+AGG - chr4_2:25181954-25181973 Msa0595780:CDS 40.0%
!! GAAAGCACTTCAGCCTATTT+GGG + chr4_2:25182591-25182610 None:intergenic 40.0%
!! TGAAAGCACTTCAGCCTATT+TGG + chr4_2:25182592-25182611 None:intergenic 40.0%
! AAATAGGCTGAAGTGCTTTC+AGG - chr4_2:25182591-25182610 Msa0595780:intron 40.0%
CAACAAATGTACCTATCAGG+AGG + chr4_2:25182642-25182661 None:intergenic 40.0%
GTTTAGGTATGCTTGTTTGG+TGG - chr4_2:25182823-25182842 Msa0595780:intron 40.0%
! GAGTAACTAATTGATGGCAC+AGG - chr4_2:25183228-25183247 Msa0595780:intron 40.0%
! TAACTAATTGATGGCACAGG+AGG - chr4_2:25183231-25183250 Msa0595780:intron 40.0%
CGAACATTGTACACAAATGC+TGG - chr4_2:25183356-25183375 Msa0595780:CDS 40.0%
GTGGATCTTTAGACACAAGT+TGG + chr4_2:25183385-25183404 None:intergenic 40.0%
TTGTGTCTAAAGATCCACCA+TGG - chr4_2:25183387-25183406 Msa0595780:CDS 40.0%
ATCCACCATGGACAAGTAAT+TGG - chr4_2:25183399-25183418 Msa0595780:CDS 40.0%
TCCACCATGGACAAGTAATT+GGG - chr4_2:25183400-25183419 Msa0595780:CDS 40.0%
AGAAGGAAAAGACGATTGCA+AGG + chr4_2:25183676-25183695 None:intergenic 40.0%
! GTTGAACTAGGTTTTGCAGA+AGG + chr4_2:25183693-25183712 None:intergenic 40.0%
ACAATCAAAGAGAGAGCTCA+AGG - chr4_2:25183781-25183800 Msa0595780:five_prime_UTR 40.0%
CAATCAAAGAGAGAGCTCAA+GGG - chr4_2:25183782-25183801 Msa0595780:five_prime_UTR 40.0%
TGGTGTGTGAATATGGATGG+AGG - chr4_2:25181948-25181967 Msa0595780:CDS 45.0%
CAGCCTATTTGGGTCAAGAA+TGG + chr4_2:25182581-25182600 None:intergenic 45.0%
GGAGATGTTCAAGCACATCT+TGG + chr4_2:25182913-25182932 None:intergenic 45.0%
TAGCTGTCTCCAATGCTTTC+AGG - chr4_2:25182969-25182988 Msa0595780:intron 45.0%
ACCCAATTACTTGTCCATGG+TGG + chr4_2:25183404-25183423 None:intergenic 45.0%
CCAACCCAATTACTTGTCCA+TGG + chr4_2:25183407-25183426 None:intergenic 45.0%
CCATGGACAAGTAATTGGGT+TGG - chr4_2:25183404-25183423 Msa0595780:CDS 45.0%
TGAGAGAGAACCGTTGAACA+CGG - chr4_2:25183807-25183826 Msa0595780:five_prime_UTR 45.0%
TGGTGTGTGAATATGGATGG+AGG - chr4_2:25181948-25181967 Msa0595780:CDS 45.0%
CAGCCTATTTGGGTCAAGAA+TGG + chr4_2:25182581-25182600 None:intergenic 45.0%
GGAGATGTTCAAGCACATCT+TGG + chr4_2:25182913-25182932 None:intergenic 45.0%
TAGCTGTCTCCAATGCTTTC+AGG - chr4_2:25182969-25182988 Msa0595780:intron 45.0%
ACCCAATTACTTGTCCATGG+TGG + chr4_2:25183404-25183423 None:intergenic 45.0%
CCAACCCAATTACTTGTCCA+TGG + chr4_2:25183407-25183426 None:intergenic 45.0%
CCATGGACAAGTAATTGGGT+TGG - chr4_2:25183404-25183423 Msa0595780:CDS 45.0%
TGAGAGAGAACCGTTGAACA+CGG - chr4_2:25183807-25183826 Msa0595780:five_prime_UTR 45.0%
!!! TTAAAATTAATAATTAGTTT+AGG + chr4_2:25182718-25182737 None:intergenic 5.0%
!!! TTAAAATTAATAATTAGTTT+AGG + chr4_2:25182718-25182737 None:intergenic 5.0%
GGTACTCTTGTGCATCAGCA+GGG + chr4_2:25182934-25182953 None:intergenic 50.0%
AGGTACTCTTGTGCATCAGC+AGG + chr4_2:25182935-25182954 None:intergenic 50.0%
! CTAATTGATGGCACAGGAGG+AGG - chr4_2:25183234-25183253 Msa0595780:intron 50.0%
GACGAACACACCGTGTTCAA+CGG + chr4_2:25183820-25183839 None:intergenic 50.0%
GGTACTCTTGTGCATCAGCA+GGG + chr4_2:25182934-25182953 None:intergenic 50.0%
AGGTACTCTTGTGCATCAGC+AGG + chr4_2:25182935-25182954 None:intergenic 50.0%
! CTAATTGATGGCACAGGAGG+AGG - chr4_2:25183234-25183253 Msa0595780:intron 50.0%
GACGAACACACCGTGTTCAA+CGG + chr4_2:25183820-25183839 None:intergenic 50.0%
TCGTCAGCGATGTACGAGAG+AGG - chr4_2:25183835-25183854 Msa0595780:five_prime_UTR 55.0%
CGTCAGCGATGTACGAGAGA+GGG - chr4_2:25183836-25183855 Msa0595780:five_prime_UTR 55.0%
TCGTCAGCGATGTACGAGAG+AGG - chr4_2:25183835-25183854 Msa0595780:five_prime_UTR 55.0%
CGTCAGCGATGTACGAGAGA+GGG - chr4_2:25183836-25183855 Msa0595780:five_prime_UTR 55.0%
GCGATGTACGAGAGAGGGAC+AGG - chr4_2:25183841-25183860 Msa0595780:five_prime_UTR 60.0%
ACGAGAGAGGGACAGGAGTG+TGG - chr4_2:25183848-25183867 Msa0595780:five_prime_UTR 60.0%
! GAGAGGGACAGGAGTGTGGT+AGG - chr4_2:25183852-25183871 Msa0595780:five_prime_UTR 60.0%
GCGATGTACGAGAGAGGGAC+AGG - chr4_2:25183841-25183860 Msa0595780:five_prime_UTR 60.0%
ACGAGAGAGGGACAGGAGTG+TGG - chr4_2:25183848-25183867 Msa0595780:five_prime_UTR 60.0%
! GAGAGGGACAGGAGTGTGGT+AGG - chr4_2:25183852-25183871 Msa0595780:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 25181533 25183892 25181533 ID=Msa0595780;Name=Msa0595780
chr4_2 mRNA 25181533 25183892 25181533 ID=Msa0595780-mRNA-1;Parent=Msa0595780;Name=Msa0595780-mRNA-1;_AED=0.08;_eAED=0.08;_QI=153|1|1|1|1|1|4|414|280
chr4_2 exon 25181533 25182175 25181533 ID=Msa0595780-mRNA-1:exon:6772;Parent=Msa0595780-mRNA-1
chr4_2 exon 25182435 25182596 25182435 ID=Msa0595780-mRNA-1:exon:6771;Parent=Msa0595780-mRNA-1
chr4_2 exon 25182776 25182828 25182776 ID=Msa0595780-mRNA-1:exon:6770;Parent=Msa0595780-mRNA-1
chr4_2 exon 25183341 25183892 25183341 ID=Msa0595780-mRNA-1:exon:6769;Parent=Msa0595780-mRNA-1
chr4_2 five_prime_UTR 25183740 25183892 25183740 ID=Msa0595780-mRNA-1:five_prime_utr;Parent=Msa0595780-mRNA-1
chr4_2 CDS 25183341 25183739 25183341 ID=Msa0595780-mRNA-1:cds;Parent=Msa0595780-mRNA-1
chr4_2 CDS 25182776 25182828 25182776 ID=Msa0595780-mRNA-1:cds;Parent=Msa0595780-mRNA-1
chr4_2 CDS 25182435 25182596 25182435 ID=Msa0595780-mRNA-1:cds;Parent=Msa0595780-mRNA-1
chr4_2 CDS 25181947 25182175 25181947 ID=Msa0595780-mRNA-1:cds;Parent=Msa0595780-mRNA-1
chr4_2 three_prime_UTR 25181533 25181946 25181533 ID=Msa0595780-mRNA-1:three_prime_utr;Parent=Msa0595780-mRNA-1
Gene Sequence

>Msa0595780

ATGGCACATTTATTTTCAAGCAACCCCCATATTTCTCATAAGCATGTTATATGTTCAAATTTAAGGTATTATGATGTTATAACAACACCAAAAAATGCATGTTATAGAATAAGAAGAAAAAGAAAAACTTGGAGTGGTTCAAAGTTGCAATGCAGTAGAAGCAATAGTACAAGTAGTTCAGAACAATTATATTTTGCTGATCAGAAAGTGATGTTGGAAATTGAGAATGATAGTGAAAATATGAAGCAAAAGTTGGATTTTTTGGTGTGTGAATATGGATGGAGGATAAGGAGATTAATTGAGAATGCAGATGAGATAAAAATGGCTGCTCAAGTTCAAGCTGAAGCTTTTCATGATCCTGTAGCTCTTTTCAATGATTTGTTCTTTCAATTCTTTAAGGCTGAAGTGCTTTCAGGACTGCTTTACAAGCTTAAATACTCACCTCCTGATAGGTATGCTTGTTTGGTGGCTGAGAATGATGAAGATTCATCAAAGGAACTTGTAGGTGTTATAGATGTTACTGTAATGAGAGACCAAGATGTGCTTGAACATCTCCCTGCTGATGCACAAGAGTACCTTTACATTTCAGGAATAGCTGTCTCCAATGCTTTCAGGAGGAGGAAAATTGCAACTGCTATGTTAAAAGCATGTGACATAATATCCAATTTGTGGGGTAATGAGTTTCTTGTCCTAAGAGCTTATGAAGAAGATTTGGGTGCTCGAACATTGTACACAAATGCTGGCTACCAACTTGTGTCTAAAGATCCACCATGGACAAGTAATTGGGTTGGAAGAAAATGTCGTGTTCTTATGATCAAAAGAATTAGTTTATTGCCTAATTAA

Protein sequence

>Msa0595780

MAHLFSSNPHISHKHVICSNLRYYDVITTPKNACYRIRRKRKTWSGSKLQCSRSNSTSSSEQLYFADQKVMLEIENDSENMKQKLDFLVCEYGWRIRRLIENADEIKMAAQVQAEAFHDPVALFNDLFFQFFKAEVLSGLLYKLKYSPPDRYACLVAENDEDSSKELVGVIDVTVMRDQDVLEHLPADAQEYLYISGIAVSNAFRRRKIATAMLKACDIISNLWGNEFLVLRAYEEDLGARTLYTNAGYQLVSKDPPWTSNWVGRKCRVLMIKRISLLPN*