Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0798380 | sp|Q6RYA0|SABP2_TOBAC | 48.837 | 258 | 101 | 4 | 219 | 445 | 2 | 259 | 9.84e-76 | 240 |
Msa0798380 | sp|Q6RYA0|SABP2_TOBAC | 47.297 | 222 | 99 | 2 | 2 | 205 | 6 | 227 | 1.31e-60 | 201 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0798380 | A0A445EXE8 | 55.131 | 497 | 171 | 5 | 2 | 446 | 12 | 508 | 0.0 | 537 |
Msa0798380 | A0A445EXE8 | 56.031 | 257 | 86 | 2 | 212 | 441 | 1 | 257 | 2.01e-87 | 285 |
Msa0798380 | A0A445EXE8 | 58.182 | 220 | 78 | 1 | 1 | 206 | 257 | 476 | 5.92e-80 | 266 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0610390 | Msa0798380 | 0.839776 | 1.294304e-57 | -8.615850e-47 |
Msa0650920 | Msa0798380 | 0.839630 | 1.412390e-57 | -8.615850e-47 |
Msa0692940 | Msa0798380 | 0.813047 | 3.118559e-51 | -8.615850e-47 |
Msa0798380 | Msa0871890 | 0.800875 | 1.173543e-48 | -8.615850e-47 |
Msa0798380 | Msa0905260 | 0.808882 | 2.488970e-50 | -8.615850e-47 |
Msa0798380 | Msa1202580 | 0.814502 | 1.491303e-51 | -8.615850e-47 |
Msa0798380 | Msa1295110 | 0.818810 | 1.614049e-52 | -8.615850e-47 |
Msa0798380 | Msa1450280 | 0.813167 | 2.936228e-51 | -8.615850e-47 |
Msa0127040 | Msa0798380 | 0.805714 | 1.168388e-49 | -8.615850e-47 |
Msa0199690 | Msa0798380 | 0.810028 | 1.412619e-50 | -8.615850e-47 |
Msa0231790 | Msa0798380 | 0.801124 | 1.044094e-48 | -8.615850e-47 |
Msa0534790 | Msa0798380 | 0.805411 | 1.352195e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0798380 | MtrunA17_Chr5g0402901 | 86.207 | 261 | 9 | 2 | 212 | 445 | 1 | 261 | 7.57e-159 | 449 |
Msa0798380 | MtrunA17_Chr5g0402901 | 67.857 | 224 | 58 | 1 | 2 | 211 | 12 | 235 | 6.77e-102 | 305 |
Msa0798380 | MtrunA17_Chr5g0402881 | 86.222 | 225 | 17 | 1 | 1 | 211 | 28 | 252 | 1.05e-140 | 404 |
Msa0798380 | MtrunA17_Chr5g0402881 | 65.900 | 261 | 62 | 2 | 212 | 445 | 18 | 278 | 3.55e-115 | 339 |
Msa0798380 | MtrunA17_Chr8g0374141 | 56.746 | 252 | 82 | 2 | 221 | 445 | 51 | 302 | 4.95e-94 | 286 |
Msa0798380 | MtrunA17_Chr8g0374141 | 54.795 | 219 | 85 | 1 | 2 | 206 | 53 | 271 | 2.93e-81 | 253 |
Msa0798380 | MtrunA17_Chr8g0336391 | 37.743 | 257 | 124 | 6 | 223 | 445 | 27 | 281 | 5.23e-49 | 169 |
Msa0798380 | MtrunA17_Chr8g0336391 | 37.220 | 223 | 118 | 6 | 2 | 204 | 27 | 247 | 1.70e-39 | 143 |
Msa0798380 | MtrunA17_Chr3g0104871 | 36.187 | 257 | 127 | 5 | 222 | 445 | 18 | 270 | 3.10e-48 | 166 |
Msa0798380 | MtrunA17_Chr3g0104871 | 38.053 | 226 | 123 | 4 | 2 | 210 | 19 | 244 | 1.21e-41 | 149 |
Msa0798380 | MtrunA17_Chr5g0402851 | 35.521 | 259 | 131 | 4 | 221 | 445 | 6 | 262 | 1.65e-45 | 159 |
Msa0798380 | MtrunA17_Chr5g0402851 | 36.207 | 232 | 124 | 5 | 2 | 211 | 8 | 237 | 2.37e-41 | 148 |
Msa0798380 | MtrunA17_Chr5g0402871 | 36.965 | 257 | 126 | 4 | 223 | 445 | 5 | 259 | 3.24e-45 | 158 |
Msa0798380 | MtrunA17_Chr5g0402871 | 36.910 | 233 | 121 | 6 | 2 | 211 | 5 | 234 | 1.11e-42 | 151 |
Msa0798380 | MtrunA17_Chr8g0336411 | 35.938 | 256 | 131 | 5 | 222 | 445 | 27 | 281 | 9.12e-43 | 152 |
Msa0798380 | MtrunA17_Chr8g0336411 | 35.065 | 231 | 125 | 5 | 2 | 210 | 28 | 255 | 8.38e-37 | 136 |
Msa0798380 | MtrunA17_Chr8g0336401 | 35.521 | 259 | 132 | 6 | 222 | 445 | 26 | 284 | 2.90e-40 | 145 |
Msa0798380 | MtrunA17_Chr8g0336401 | 35.345 | 232 | 127 | 6 | 2 | 210 | 27 | 258 | 3.37e-35 | 132 |
Msa0798380 | MtrunA17_Chr8g0336441 | 34.375 | 256 | 133 | 5 | 222 | 445 | 26 | 278 | 3.33e-40 | 145 |
Msa0798380 | MtrunA17_Chr8g0336441 | 34.862 | 218 | 125 | 4 | 2 | 203 | 27 | 243 | 1.79e-35 | 132 |
Msa0798380 | MtrunA17_Chr5g0402841 | 33.977 | 259 | 134 | 5 | 221 | 445 | 6 | 261 | 3.14e-39 | 142 |
Msa0798380 | MtrunA17_Chr5g0402841 | 34.335 | 233 | 126 | 7 | 2 | 211 | 8 | 236 | 1.66e-34 | 129 |
Msa0798380 | MtrunA17_Chr8g0336381 | 34.351 | 262 | 133 | 7 | 217 | 442 | 1 | 259 | 1.07e-38 | 140 |
Msa0798380 | MtrunA17_Chr8g0336381 | 35.918 | 245 | 132 | 5 | 2 | 227 | 7 | 245 | 6.06e-38 | 139 |
Msa0798380 | MtrunA17_Chr3g0077351 | 34.884 | 258 | 139 | 4 | 214 | 442 | 85 | 342 | 2.72e-30 | 120 |
Msa0798380 | MtrunA17_Chr3g0077351 | 32.420 | 219 | 122 | 5 | 3 | 200 | 95 | 308 | 1.47e-20 | 92.4 |
Msa0798380 | MtrunA17_Chr5g0428471 | 34.222 | 225 | 115 | 5 | 2 | 202 | 30 | 245 | 4.18e-28 | 112 |
Msa0798380 | MtrunA17_Chr5g0428471 | 28.082 | 292 | 171 | 6 | 183 | 446 | 1 | 281 | 1.28e-22 | 97.4 |
Msa0798380 | MtrunA17_Chr3g0128581 | 34.375 | 224 | 114 | 4 | 2 | 201 | 36 | 250 | 5.02e-28 | 112 |
Msa0798380 | MtrunA17_Chr3g0128581 | 42.308 | 104 | 50 | 1 | 220 | 313 | 33 | 136 | 2.16e-22 | 96.7 |
Msa0798380 | MtrunA17_Chr7g0219561 | 32.283 | 254 | 132 | 5 | 223 | 442 | 124 | 371 | 4.33e-27 | 111 |
Msa0798380 | MtrunA17_Chr7g0219561 | 33.790 | 219 | 120 | 6 | 2 | 200 | 124 | 337 | 1.41e-25 | 107 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0798380 | AT2G23620.1 | 46.442 | 267 | 105 | 7 | 212 | 445 | 1 | 262 | 9.72e-69 | 219 |
Msa0798380 | AT2G23620.1 | 48.214 | 224 | 98 | 3 | 2 | 207 | 9 | 232 | 7.44e-62 | 202 |
Msa0798380 | AT5G10300.1 | 45.736 | 258 | 107 | 4 | 219 | 445 | 2 | 257 | 2.23e-63 | 206 |
Msa0798380 | AT5G10300.1 | 47.273 | 220 | 100 | 2 | 2 | 205 | 6 | 225 | 5.76e-61 | 199 |
Msa0798380 | AT2G23600.1 | 42.264 | 265 | 119 | 6 | 212 | 445 | 1 | 262 | 2.95e-63 | 206 |
Msa0798380 | AT2G23600.1 | 48.402 | 219 | 95 | 3 | 2 | 202 | 9 | 227 | 4.22e-62 | 202 |
Msa0798380 | AT2G23580.1 | 44.402 | 259 | 112 | 5 | 219 | 445 | 4 | 262 | 3.25e-63 | 205 |
Msa0798380 | AT2G23580.1 | 42.727 | 220 | 107 | 3 | 2 | 202 | 8 | 227 | 6.47e-54 | 181 |
Msa0798380 | AT2G23600.2 | 42.264 | 265 | 119 | 6 | 212 | 445 | 16 | 277 | 4.50e-63 | 206 |
Msa0798380 | AT2G23600.2 | 48.402 | 219 | 95 | 3 | 2 | 202 | 24 | 242 | 5.03e-62 | 203 |
Msa0798380 | AT2G23590.1 | 42.412 | 257 | 106 | 4 | 221 | 445 | 25 | 271 | 5.52e-63 | 205 |
Msa0798380 | AT2G23590.1 | 48.372 | 215 | 92 | 2 | 2 | 202 | 27 | 236 | 1.79e-62 | 204 |
Msa0798380 | AT2G23610.1 | 41.313 | 259 | 121 | 4 | 218 | 445 | 4 | 262 | 7.22e-61 | 199 |
Msa0798380 | AT2G23610.1 | 44.292 | 219 | 104 | 3 | 2 | 202 | 9 | 227 | 3.08e-54 | 182 |
Msa0798380 | AT2G23550.4 | 44.231 | 260 | 113 | 5 | 218 | 445 | 10 | 269 | 3.95e-60 | 197 |
Msa0798380 | AT2G23550.4 | 40.991 | 222 | 108 | 4 | 2 | 202 | 15 | 234 | 2.43e-48 | 167 |
Msa0798380 | AT2G23550.1 | 44.231 | 260 | 113 | 5 | 218 | 445 | 3 | 262 | 4.27e-60 | 197 |
Msa0798380 | AT2G23550.1 | 40.991 | 222 | 108 | 4 | 2 | 202 | 8 | 227 | 2.20e-48 | 167 |
Msa0798380 | AT2G23560.1 | 40.078 | 257 | 125 | 4 | 218 | 445 | 3 | 259 | 1.05e-57 | 191 |
Msa0798380 | AT2G23560.1 | 39.352 | 216 | 115 | 3 | 3 | 202 | 9 | 224 | 2.72e-47 | 164 |
Msa0798380 | AT4G37150.1 | 41.016 | 256 | 117 | 5 | 222 | 445 | 2 | 255 | 1.36e-57 | 191 |
Msa0798380 | AT4G37150.1 | 39.462 | 223 | 114 | 4 | 2 | 205 | 3 | 223 | 7.75e-49 | 167 |
Msa0798380 | AT2G23610.2 | 42.678 | 239 | 101 | 5 | 218 | 445 | 4 | 217 | 4.25e-56 | 185 |
Msa0798380 | AT2G23610.2 | 40.278 | 216 | 72 | 4 | 2 | 202 | 9 | 182 | 1.47e-43 | 152 |
Msa0798380 | AT3G50440.1 | 39.526 | 253 | 122 | 3 | 224 | 445 | 22 | 274 | 1.65e-50 | 172 |
Msa0798380 | AT3G50440.1 | 36.697 | 218 | 120 | 2 | 3 | 202 | 22 | 239 | 2.33e-40 | 146 |
Msa0798380 | AT2G23550.2 | 40.562 | 249 | 109 | 6 | 218 | 445 | 3 | 233 | 4.29e-46 | 160 |
Msa0798380 | AT2G23550.2 | 35.294 | 221 | 93 | 4 | 2 | 202 | 8 | 198 | 9.01e-33 | 124 |
Msa0798380 | AT2G23600.3 | 43.931 | 173 | 80 | 5 | 212 | 370 | 16 | 185 | 5.79e-43 | 150 |
Msa0798380 | AT2G23600.3 | 45.679 | 162 | 70 | 3 | 2 | 145 | 24 | 185 | 8.19e-40 | 142 |
Msa0798380 | AT5G10300.2 | 49.405 | 168 | 69 | 3 | 219 | 372 | 2 | 167 | 2.91e-41 | 146 |
Msa0798380 | AT5G10300.2 | 46.875 | 160 | 69 | 2 | 2 | 145 | 6 | 165 | 1.96e-39 | 141 |
Msa0798380 | AT2G23580.2 | 44.643 | 168 | 78 | 4 | 218 | 370 | 3 | 170 | 5.04e-39 | 140 |
Msa0798380 | AT2G23580.2 | 42.105 | 171 | 80 | 3 | 3 | 154 | 9 | 179 | 1.87e-35 | 130 |
Msa0798380 | AT2G23570.1 | 44.068 | 177 | 78 | 2 | 290 | 445 | 2 | 178 | 8.89e-38 | 136 |
Msa0798380 | AT2G23570.1 | 39.837 | 123 | 70 | 1 | 84 | 202 | 21 | 143 | 2.00e-21 | 91.7 |
Msa0798380 | AT2G23550.3 | 46.012 | 163 | 73 | 4 | 218 | 365 | 10 | 172 | 9.31e-38 | 137 |
Msa0798380 | AT2G23550.3 | 39.877 | 163 | 75 | 4 | 2 | 143 | 15 | 175 | 2.32e-31 | 119 |
Msa0798380 | AT4G37140.1 | 51.786 | 112 | 43 | 2 | 221 | 322 | 1 | 111 | 1.66e-32 | 120 |
Msa0798380 | AT4G37140.1 | 46.226 | 106 | 43 | 1 | 2 | 93 | 3 | 108 | 3.42e-29 | 111 |
Msa0798380 | AT4G09900.1 | 34.127 | 252 | 137 | 4 | 220 | 442 | 95 | 346 | 1.64e-30 | 121 |
Msa0798380 | AT4G09900.1 | 31.532 | 222 | 122 | 5 | 3 | 201 | 99 | 313 | 1.50e-20 | 93.2 |
Msa0798380 | AT1G33990.1 | 32.800 | 250 | 139 | 4 | 222 | 442 | 96 | 345 | 5.80e-29 | 117 |
Msa0798380 | AT1G33990.1 | 30.455 | 220 | 127 | 4 | 3 | 201 | 98 | 312 | 3.04e-19 | 89.4 |
Msa0798380 | AT4G37140.2 | 55.172 | 87 | 38 | 1 | 2 | 88 | 3 | 88 | 1.96e-28 | 108 |
Msa0798380 | AT4G37140.2 | 52.747 | 91 | 33 | 1 | 222 | 302 | 2 | 92 | 2.42e-26 | 102 |
Msa0798380 | AT1G69240.1 | 30.855 | 269 | 148 | 7 | 214 | 448 | 177 | 441 | 1.00e-27 | 115 |
Msa0798380 | AT1G69240.1 | 34.234 | 222 | 121 | 6 | 2 | 202 | 187 | 404 | 7.18e-24 | 103 |
Msa0798380 | AT3G29770.1 | 34.457 | 267 | 131 | 6 | 210 | 442 | 129 | 385 | 2.76e-27 | 113 |
Msa0798380 | AT3G29770.1 | 35.616 | 219 | 122 | 4 | 2 | 203 | 138 | 354 | 2.90e-23 | 101 |
Msa0798380 | AT1G26360.1 | 30.924 | 249 | 144 | 3 | 222 | 442 | 188 | 436 | 3.93e-27 | 113 |
Msa0798380 | AT1G26360.1 | 34.101 | 217 | 124 | 4 | 2 | 201 | 189 | 403 | 1.78e-25 | 108 |
Msa0798380 | AT3G10870.1 | 41.818 | 110 | 54 | 1 | 214 | 313 | 11 | 120 | 1.49e-24 | 103 |
Msa0798380 | AT3G10870.1 | 48.750 | 80 | 41 | 0 | 2 | 81 | 20 | 99 | 1.89e-21 | 94.4 |
Msa0798380 | AT5G58310.1 | 32.870 | 216 | 108 | 9 | 2 | 188 | 5 | 212 | 1.66e-22 | 97.1 |
Msa0798380 | AT5G58310.1 | 27.925 | 265 | 149 | 6 | 221 | 447 | 3 | 263 | 1.04e-20 | 92.0 |
Msa0798380 | AT4G16690.1 | 30.275 | 218 | 133 | 5 | 1 | 202 | 11 | 225 | 1.03e-19 | 89.0 |
Msa0798380 | AT4G16690.1 | 28.400 | 250 | 141 | 5 | 223 | 440 | 12 | 255 | 5.45e-18 | 84.0 |
Msa0798380 | AT3G29770.2 | 50.685 | 73 | 36 | 0 | 2 | 74 | 138 | 210 | 5.60e-15 | 75.5 |
Find 94 sgRNAs with CRISPR-Local
Find 374 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCGCATCAATCCCAGCATTT+TGG | 0.143115 | 5_3:-11127087 | None:intergenic |
CCATATCAATCCCAGCATTT+TGG | 0.159841 | 5_3:-11123096 | None:intergenic |
TGCTTATATTGTTGCTAATA+AGG | 0.172905 | 5_3:+11123036 | Msa0798380:CDS |
ACTGATTCATATCCTTCTTT+TGG | 0.217942 | 5_3:-11123007 | None:intergenic |
AACAAAACATTGATACGTTT+TGG | 0.231263 | 5_3:+11122755 | Msa0798380:CDS |
TATGAATTGGTCTTGACTTT+AGG | 0.273796 | 5_3:+11122935 | Msa0798380:CDS |
GATGGTTTGTGGTGGGTATC+AGG | 0.282227 | 5_3:-11121554 | None:intergenic |
AATTTATCCAAGGAGGGATA+TGG | 0.283211 | 5_3:+11126992 | Msa0798380:CDS |
TTTGTTCTGGTACATGGTTC+TGG | 0.283508 | 5_3:+11121248 | Msa0798380:CDS |
ATTGAGAGATACCCGGTTAC+TGG | 0.326715 | 5_3:+11126442 | Msa0798380:CDS |
ACAACATACTAGTTAAATTT+CGG | 0.329682 | 5_3:-11127202 | None:intergenic |
GACTCTGAGGTCTCATTTGA+TGG | 0.342472 | 5_3:+11122731 | Msa0798380:CDS |
CTGGCATGGGTGCCTGGAAT+TGG | 0.345133 | 5_3:+11121267 | Msa0798380:CDS |
GATGGATTGTGTTGAGTATC+AGG | 0.350453 | 5_3:-11125797 | None:intergenic |
TATTGAAAGATACCGAAGTA+TGG | 0.355926 | 5_3:+11122700 | Msa0798380:CDS |
GTTCTTGTTGGACATAGCTT+TGG | 0.363914 | 5_3:+11125698 | Msa0798380:CDS |
GTGTCTAACCATCCAGTAAC+CGG | 0.382878 | 5_3:-11126454 | None:intergenic |
CTTAAGCTTGTACCAATTCC+AGG | 0.385338 | 5_3:-11121279 | None:intergenic |
ATGGTTCTGGCATGGGTGCC+TGG | 0.389388 | 5_3:+11121261 | Msa0798380:CDS |
GATGCGGTGAAAGTGATTAA+TGG | 0.393295 | 5_3:+11127103 | Msa0798380:CDS |
GTTCTTGTGGGACATAGCTT+TGG | 0.395399 | 5_3:+11121455 | Msa0798380:CDS |
CCAAAATGCTGGGATTGATA+TGG | 0.428994 | 5_3:+11123096 | Msa0798380:CDS |
CTTGTTGGACATAGCTTTGG+AGG | 0.435184 | 5_3:+11125701 | Msa0798380:CDS |
CTGGTACATGGTTCTGGCAT+GGG | 0.439841 | 5_3:+11121254 | Msa0798380:CDS |
TATTGTTGCTAATAAGGACT+TGG | 0.451138 | 5_3:+11123042 | Msa0798380:CDS |
AATAAATTCTCACCAGTTGT+AGG | 0.453637 | 5_3:-11121583 | None:intergenic |
TCCATCATATGTTCTAGAAC+AGG | 0.456797 | 5_3:+11125814 | Msa0798380:CDS |
CTTGTGGGACATAGCTTTGG+AGG | 0.459920 | 5_3:+11121458 | Msa0798380:CDS |
AACATTGTGGACAGTAGCTT+GGG | 0.470048 | 5_3:-11122779 | None:intergenic |
ACCATCTTATGTCCTACAAC+TGG | 0.471834 | 5_3:+11121571 | Msa0798380:CDS |
GATTAATGGAGCAGATCATA+TGG | 0.479402 | 5_3:+11127117 | Msa0798380:CDS |
AACAAAATGCTGTTGTTACC+TGG | 0.480280 | 5_3:+11126496 | Msa0798380:CDS |
CTAGTACATGGTGTTAGCGT+TGG | 0.485280 | 5_3:+11125497 | Msa0798380:CDS |
ACCAGTTGTAGGACATAAGA+TGG | 0.487201 | 5_3:-11121572 | None:intergenic |
GCTGAAAATTTCCCAAAAGA+AGG | 0.491061 | 5_3:+11122995 | Msa0798380:CDS |
TATTGGATGATCCAAAATGC+TGG | 0.496170 | 5_3:+11123085 | Msa0798380:CDS |
ATGGTGTTAGCGTTGGAGCT+TGG | 0.496712 | 5_3:+11125504 | Msa0798380:CDS |
ACGCCATAAAGATACCTCTC+TGG | 0.500443 | 5_3:-11122816 | None:intergenic |
AAGCCACGGTTAGAATCATC+TGG | 0.501623 | 5_3:+11121299 | Msa0798380:CDS |
GAACATTGTGGACAGTAGCT+TGG | 0.509046 | 5_3:-11122780 | None:intergenic |
TCTGGTACATGGTTCTGGCA+TGG | 0.509920 | 5_3:+11121253 | Msa0798380:CDS |
ATTTATCCAAGGAGGGATAT+GGG | 0.510344 | 5_3:+11126993 | Msa0798380:CDS |
GACATAAGATGGTTTGTGGT+GGG | 0.511066 | 5_3:-11121561 | None:intergenic |
CTTTCAACTCTGCTCCATTG+AGG | 0.515282 | 5_3:+11126543 | Msa0798380:CDS |
AGAGATAAACAAAGTTCTTG+AGG | 0.516394 | 5_3:-11127154 | None:intergenic |
CAATGGATGATCCAAAATGC+TGG | 0.517637 | 5_3:+11127076 | Msa0798380:CDS |
TTAGCGTTGGAGCTTGGAGT+TGG | 0.518739 | 5_3:+11125510 | Msa0798380:CDS |
ACCTGTTCTAGAACATATGA+TGG | 0.524048 | 5_3:-11125815 | None:intergenic |
TTAGATTTCATGATCTCACT+TGG | 0.524620 | 5_3:+11121416 | Msa0798380:CDS |
TGATGACTTGGCAATTCCAC+TGG | 0.525862 | 5_3:+11127045 | Msa0798380:CDS |
AACCGACCCATATCCCTCCT+TGG | 0.527820 | 5_3:-11126999 | None:intergenic |
GGCACAATTAAGTACCTCAA+TGG | 0.530565 | 5_3:-11126557 | None:intergenic |
TTCCAGTGGAGTATCAGTAT+TGG | 0.533127 | 5_3:+11123068 | Msa0798380:CDS |
TATTGTTGCAAATGATGACT+TGG | 0.549585 | 5_3:+11127033 | Msa0798380:CDS |
ATCCAATACTGATACTCCAC+TGG | 0.553163 | 5_3:-11123070 | None:intergenic |
AATGGATGATCCAAAATGCT+GGG | 0.553255 | 5_3:+11127077 | Msa0798380:CDS |
ATTGAAAGATACCGAAGTAT+GGG | 0.554517 | 5_3:+11122701 | Msa0798380:CDS |
ATACCTCTCTGGGACTGAGT+TGG | 0.554830 | 5_3:-11122805 | None:intergenic |
GTAGACAAGAACTTTGAGCC+AGG | 0.559075 | 5_3:-11126514 | None:intergenic |
CGCCATAAAGATACCTCTCT+GGG | 0.559378 | 5_3:-11122815 | None:intergenic |
AATTGGTCTTGACTTTAGGA+AGG | 0.564112 | 5_3:+11122939 | Msa0798380:CDS |
GCGAAGAATTTATCCAAGGA+GGG | 0.565282 | 5_3:+11126986 | Msa0798380:CDS |
GCACTTGATCTTGCAGCTAG+TGG | 0.572223 | 5_3:+11121335 | Msa0798380:CDS |
GTAGGACATAAGATGGTTTG+TGG | 0.573095 | 5_3:-11121565 | None:intergenic |
ATTGGATGATCCAAAATGCT+GGG | 0.574282 | 5_3:+11123086 | Msa0798380:CDS |
TATCAGGAATAAAAGCTGCT+AGG | 0.583140 | 5_3:-11125781 | None:intergenic |
ATCCAAGGAGGGATATGGGT+CGG | 0.592535 | 5_3:+11126997 | Msa0798380:CDS |
AGAGATACCCGGTTACTGGA+TGG | 0.592966 | 5_3:+11126446 | Msa0798380:CDS |
AGCTAGTGGCATCAACACTC+AGG | 0.598551 | 5_3:+11121349 | Msa0798380:CDS |
AATGAGTATAGCTCTTGCAA+TGG | 0.600234 | 5_3:+11125724 | Msa0798380:CDS |
GAGGCTAAGAACTCTAACAA+AGG | 0.608414 | 5_3:-11125653 | None:intergenic |
AGTCTAACCATCCCATACTT+CGG | 0.612114 | 5_3:-11122712 | None:intergenic |
TGACCTACAGATTCTAACTG+TGG | 0.617711 | 5_3:-11125545 | None:intergenic |
CTTTATAGAAGATTTGTCTG+AGG | 0.621943 | 5_3:+11122973 | Msa0798380:CDS |
TATGGGATGGTTAGACTCTG+AGG | 0.622295 | 5_3:+11122718 | Msa0798380:CDS |
TAAGGACTTGGCAATTCCAG+TGG | 0.623489 | 5_3:+11123054 | Msa0798380:CDS |
GTTAGAATCATCTGGTCACA+AGG | 0.623697 | 5_3:+11121307 | Msa0798380:CDS |
TGTCTAACCATCCAGTAACC+GGG | 0.625170 | 5_3:-11126453 | None:intergenic |
ATCCATTGTTCATACTCCAG+TGG | 0.633048 | 5_3:-11127061 | None:intergenic |
AGCGAAGAATTTATCCAAGG+AGG | 0.642147 | 5_3:+11126985 | Msa0798380:CDS |
TGACCAGATGATTCTAACCG+TGG | 0.644087 | 5_3:-11121302 | None:intergenic |
TGAAGCGAAGAATTTATCCA+AGG | 0.646478 | 5_3:+11126982 | Msa0798380:CDS |
TTCCACTGGAGTATGAACAA+TGG | 0.648915 | 5_3:+11127059 | Msa0798380:CDS |
AAAGATACCGAAGTATGGGA+TGG | 0.650263 | 5_3:+11122705 | Msa0798380:CDS |
GAGATCATGAAATCTAACAA+AGG | 0.657969 | 5_3:-11121410 | None:intergenic |
GGACATAAGATGGTTTGTGG+TGG | 0.665403 | 5_3:-11121562 | None:intergenic |
ATTGGTACAAGCTTAAGCCA+CGG | 0.667332 | 5_3:+11121285 | Msa0798380:CDS |
AAACCACAGTTAGAATCTGT+AGG | 0.674566 | 5_3:+11125542 | Msa0798380:CDS |
CTTCCAACTCAGTCCCAGAG+AGG | 0.691808 | 5_3:+11122802 | Msa0798380:CDS |
ATAGTATATTGAGAGATACC+CGG | 0.707415 | 5_3:+11126435 | Msa0798380:intron |
CCAAAATGCTGGGATTGATG+CGG | 0.708924 | 5_3:+11127087 | Msa0798380:CDS |
ACTGAGTTGGAAGAACATTG+TGG | 0.726493 | 5_3:-11122792 | None:intergenic |
TTTGCAACAATACAAGCACG+TGG | 0.741755 | 5_3:-11127022 | None:intergenic |
TTAGCAACAATATAAGCACG+AGG | 0.764878 | 5_3:-11123031 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATAAAAAAAAATTTACAG+GGG | - | chr5_3:11121898-11121917 | None:intergenic | 10.0% |
!! | GTAAATAAAAAAAAATTTAC+AGG | - | chr5_3:11121900-11121919 | None:intergenic | 10.0% |
!! | ATAAATCAAAAAAAAATTAC+AGG | + | chr5_3:11122058-11122077 | Msa0798380:intron | 10.0% |
!! | TAAATCAAAAAAAAATTACA+GGG | + | chr5_3:11122059-11122078 | Msa0798380:intron | 10.0% |
!!! | ATCTATGTAAATTTTAATTA+GGG | - | chr5_3:11122133-11122152 | None:intergenic | 10.0% |
!! | AAAAAGATGTATAATAAATA+GGG | - | chr5_3:11123726-11123745 | None:intergenic | 10.0% |
!! | AATATAAATCTAATTTATCA+AGG | - | chr5_3:11126354-11126373 | None:intergenic | 10.0% |
!!! | TTTTTTTATTGTTTATATTC+TGG | + | chr5_3:11126804-11126823 | Msa0798380:intron | 10.0% |
!!! | AAAACAATTTTTTTTTACAG+GGG | - | chr5_3:11121923-11121942 | None:intergenic | 15.0% |
!!! | CAAAACAATTTTTTTTTACA+GGG | - | chr5_3:11121924-11121943 | None:intergenic | 15.0% |
!!! | TCAAAACAATTTTTTTTTAC+AGG | - | chr5_3:11121925-11121944 | None:intergenic | 15.0% |
!!! | AAATAAAATTGGTTTTTGTT+TGG | + | chr5_3:11121994-11122013 | Msa0798380:intron | 15.0% |
!!! | ATCAAAACAAATTTTTTTAC+AGG | + | chr5_3:11122033-11122052 | Msa0798380:intron | 15.0% |
!!! | TCAAAACAAATTTTTTTACA+GGG | + | chr5_3:11122034-11122053 | Msa0798380:intron | 15.0% |
!! | AAATCAAAAAAAAATTACAG+GGG | + | chr5_3:11122060-11122079 | Msa0798380:intron | 15.0% |
!!! | AAATTTTAATTAGGGTTAAT+AGG | - | chr5_3:11122125-11122144 | None:intergenic | 15.0% |
!!! | GATCTATGTAAATTTTAATT+AGG | - | chr5_3:11122134-11122153 | None:intergenic | 15.0% |
!! | AAAAGATTCATTTATAATCA+AGG | - | chr5_3:11122456-11122475 | None:intergenic | 15.0% |
!! | GTAAATTAAAAATGAACATT+AGG | - | chr5_3:11122654-11122673 | None:intergenic | 15.0% |
!!! | ATTTTGTTTATAATAGTGAT+AGG | + | chr5_3:11123275-11123294 | Msa0798380:intron | 15.0% |
!!! | AATTTTTCTTATAAAACAAG+AGG | - | chr5_3:11123332-11123351 | None:intergenic | 15.0% |
!!! | CTTGTTTTATAAGAAAAATT+TGG | + | chr5_3:11123332-11123351 | Msa0798380:intron | 15.0% |
!! | AAAGAAATAATTAATGTAGT+TGG | - | chr5_3:11123693-11123712 | None:intergenic | 15.0% |
!! | AAAAGATGTATAATAAATAG+GGG | - | chr5_3:11123725-11123744 | None:intergenic | 15.0% |
!! | GAAAAAGATGTATAATAAAT+AGG | - | chr5_3:11123727-11123746 | None:intergenic | 15.0% |
!! | ATCACTGAAAAAATATATAT+TGG | + | chr5_3:11124079-11124098 | Msa0798380:intron | 15.0% |
!! | TAGATGTAAAATTACATAAA+AGG | + | chr5_3:11124337-11124356 | Msa0798380:intron | 15.0% |
!!! | ACATGAAAATTGATTTTTTT+AGG | + | chr5_3:11124446-11124465 | Msa0798380:intron | 15.0% |
!! | GAATTTAGTTAGAATAATAA+GGG | + | chr5_3:11124757-11124776 | Msa0798380:intron | 15.0% |
!!! | TAGAATATTGTTAATTTTCT+TGG | + | chr5_3:11125915-11125934 | Msa0798380:intron | 15.0% |
!!! | TGACGTATTTTTTTAATTTA+AGG | - | chr5_3:11126070-11126089 | None:intergenic | 15.0% |
!!! | TGATTATATTTGTTTTAAGT+TGG | + | chr5_3:11126192-11126211 | Msa0798380:intron | 15.0% |
!!! | TTTCCTAGAAAAATTTTAGT+TGG | + | chr5_3:11121509-11121528 | Msa0798380:intron | 20.0% |
!!! | ATTCCAACTAAAATTTTTCT+AGG | - | chr5_3:11121515-11121534 | None:intergenic | 20.0% |
!! | TTACTCTCATATTAATTGAA+AGG | + | chr5_3:11121680-11121699 | Msa0798380:intron | 20.0% |
!! | TACTCTCATATTAATTGAAA+GGG | + | chr5_3:11121681-11121700 | Msa0798380:intron | 20.0% |
!! | TATTAATTGAAAGGGTTAAT+AGG | + | chr5_3:11121689-11121708 | Msa0798380:intron | 20.0% |
!!! | AAACAATTTTTTTTTACAGG+GGG | - | chr5_3:11121922-11121941 | None:intergenic | 20.0% |
!!! | AAGAAATTTTCGTTTTTGTT+TGG | - | chr5_3:11121965-11121984 | None:intergenic | 20.0% |
!!! | CAAAACAAATTTTTTTACAG+GGG | + | chr5_3:11122035-11122054 | Msa0798380:intron | 20.0% |
!! | AATCAAAAAAAAATTACAGG+GGG | + | chr5_3:11122061-11122080 | Msa0798380:intron | 20.0% |
!!! | ACGAAAATTTAGTTTTGTTA+AGG | + | chr5_3:11122610-11122629 | Msa0798380:intron | 20.0% |
!! | TTATTGCTTAAAAAATTGCT+TGG | + | chr5_3:11122895-11122914 | Msa0798380:intron | 20.0% |
!!! | AATTTTGTAGGATTATGAAT+TGG | + | chr5_3:11122922-11122941 | Msa0798380:intron | 20.0% |
!! | GACAAAAAAAATTCTCAAAA+GGG | - | chr5_3:11123643-11123662 | None:intergenic | 20.0% |
!!! | AATAATCTAAAATGATACGA+TGG | + | chr5_3:11124180-11124199 | Msa0798380:intron | 20.0% |
!!! | ATAATCTAAAATGATACGAT+GGG | + | chr5_3:11124181-11124200 | Msa0798380:intron | 20.0% |
!! | TTTATCATATAAATGAACTC+TGG | + | chr5_3:11124365-11124384 | Msa0798380:intron | 20.0% |
!!! | ATTGATTTTTTTAGGAACTA+TGG | + | chr5_3:11124454-11124473 | Msa0798380:intron | 20.0% |
!!! | TTGATTTTTTTAGGAACTAT+GGG | + | chr5_3:11124455-11124474 | Msa0798380:intron | 20.0% |
!! | GGAATTTAGTTAGAATAATA+AGG | + | chr5_3:11124756-11124775 | Msa0798380:intron | 20.0% |
!! | AATATAAGCTTCAAATGTTT+AGG | + | chr5_3:11125177-11125196 | Msa0798380:intron | 20.0% |
!! | TTTCTATATTTAGCAAAAGA+AGG | + | chr5_3:11125415-11125434 | Msa0798380:intron | 20.0% |
!!! | AATATTGTTAATTTTCTTGG+TGG | + | chr5_3:11125918-11125937 | Msa0798380:intron | 20.0% |
!!! | TCACTAAAGTCTAAAATATA+TGG | + | chr5_3:11126649-11126668 | Msa0798380:intron | 20.0% |
!!! | AATTGGTGAAGATTTTAATA+AGG | + | chr5_3:11126930-11126949 | Msa0798380:intron | 20.0% |
!!! | ACAAGAACTACTTTTTCATT+TGG | - | chr5_3:11121443-11121462 | None:intergenic | 25.0% |
! | AAATGAAAAAGTAGTTCTTG+TGG | + | chr5_3:11121442-11121461 | Msa0798380:CDS | 25.0% |
! | AATGAAAAAGTAGTTCTTGT+GGG | + | chr5_3:11121443-11121462 | Msa0798380:CDS | 25.0% |
! | AATGCTATCATCTATAAGTT+TGG | - | chr5_3:11121662-11121681 | None:intergenic | 25.0% |
!!! | TTTTGATTTACTCTCCTAAT+AGG | + | chr5_3:11121939-11121958 | Msa0798380:intron | 25.0% |
! | ATCAAAAAAAAATTACAGGG+GGG | + | chr5_3:11122062-11122081 | Msa0798380:intron | 25.0% |
! | AAAATTTAAACGTAACAACC+CGG | + | chr5_3:11122158-11122177 | Msa0798380:intron | 25.0% |
! | TCATTCTTAACAAATTAGAC+CGG | - | chr5_3:11122180-11122199 | None:intergenic | 25.0% |
! | TGTAAATCTAAACATTCACA+AGG | - | chr5_3:11122570-11122589 | None:intergenic | 25.0% |
!!! | TTTTTAATTTACCTGACCTT+TGG | + | chr5_3:11122662-11122681 | Msa0798380:intron | 25.0% |
!!! | TTTTAATTTACCTGACCTTT+GGG | + | chr5_3:11122663-11122682 | Msa0798380:intron | 25.0% |
!! | AACAAAACATTGATACGTTT+TGG | + | chr5_3:11122755-11122774 | Msa0798380:CDS | 25.0% |
! | TGCTTATATTGTTGCTAATA+AGG | + | chr5_3:11123036-11123055 | Msa0798380:CDS | 25.0% |
! | AGTATTTATGAGTGATATCA+AGG | - | chr5_3:11123189-11123208 | None:intergenic | 25.0% |
! | TTGTTTATAATAGTGATAGG+AGG | + | chr5_3:11123278-11123297 | Msa0798380:intron | 25.0% |
!! | TCAAAAGGGTCTTATAATTA+GGG | - | chr5_3:11123629-11123648 | None:intergenic | 25.0% |
! | GGACAAAAAAAATTCTCAAA+AGG | - | chr5_3:11123644-11123663 | None:intergenic | 25.0% |
!!! | ATTCCCGTTATTTTTTCAAA+AGG | + | chr5_3:11123863-11123882 | Msa0798380:intron | 25.0% |
!!! | TTCCCGTTATTTTTTCAAAA+GGG | + | chr5_3:11123864-11123883 | Msa0798380:intron | 25.0% |
!!! | ATGATTTGCATTTTTTTGAG+TGG | + | chr5_3:11123914-11123933 | Msa0798380:intron | 25.0% |
!!! | AATGTTTTCTTTAAAACTGC+TGG | + | chr5_3:11124026-11124045 | Msa0798380:intron | 25.0% |
!! | TAATCTAAAATGATACGATG+GGG | + | chr5_3:11124182-11124201 | Msa0798380:intron | 25.0% |
! | TTCGCAAAGAAAGAAAAAAT+GGG | + | chr5_3:11124570-11124589 | Msa0798380:intron | 25.0% |
! | TGAAATGAAAGAGAAGATTA+AGG | + | chr5_3:11124725-11124744 | Msa0798380:intron | 25.0% |
! | GAAATGAAAGAGAAGATTAA+GGG | + | chr5_3:11124726-11124745 | Msa0798380:intron | 25.0% |
! | TAGAATAATAAGGGTAAAAC+TGG | + | chr5_3:11124766-11124785 | Msa0798380:intron | 25.0% |
! | TTTCCTGAAAAAATTCAAGT+TGG | + | chr5_3:11125752-11125771 | Msa0798380:CDS | 25.0% |
!!! | ATTCCAACTTGAATTTTTTC+AGG | - | chr5_3:11125758-11125777 | None:intergenic | 25.0% |
! | TTTACCATCAAATGTAAACT+AGG | + | chr5_3:11125983-11126002 | Msa0798380:intron | 25.0% |
! | TTATCCTAGTTTACATTTGA+TGG | - | chr5_3:11125990-11126009 | None:intergenic | 25.0% |
!!! | TATTTTAGACTTTAGTGACA+GGG | - | chr5_3:11126647-11126666 | None:intergenic | 25.0% |
!!! | ATATTTTAGACTTTAGTGAC+AGG | - | chr5_3:11126648-11126667 | None:intergenic | 25.0% |
!! | CGTCACAATATATGATTTTT+GGG | - | chr5_3:11126880-11126899 | None:intergenic | 25.0% |
! | CCAAAAATCATATATTGTGA+CGG | + | chr5_3:11126878-11126897 | Msa0798380:intron | 25.0% |
GAGATCATGAAATCTAACAA+AGG | - | chr5_3:11121413-11121432 | None:intergenic | 30.0% | |
TTAGATTTCATGATCTCACT+TGG | + | chr5_3:11121416-11121435 | Msa0798380:CDS | 30.0% | |
! | AGGAAAATTTTCCATTGCAA+GGG | - | chr5_3:11121495-11121514 | None:intergenic | 30.0% |
! | TAGGAAAATTTTCCATTGCA+AGG | - | chr5_3:11121496-11121515 | None:intergenic | 30.0% |
AATAAATTCTCACCAGTTGT+AGG | - | chr5_3:11121586-11121605 | None:intergenic | 30.0% | |
CAACTGGTGAGAATTTATTA+TGG | + | chr5_3:11121587-11121606 | Msa0798380:intron | 30.0% | |
! | GTTTTGCTTATAATAGTGAC+TGG | - | chr5_3:11121848-11121867 | None:intergenic | 30.0% |
! | GTTTTGCTTATAATAGTGAC+CGG | + | chr5_3:11121848-11121867 | Msa0798380:intron | 30.0% |
TCAAAAAAAAATTACAGGGG+GGG | + | chr5_3:11122063-11122082 | Msa0798380:intron | 30.0% | |
TCTGTAATATAGGTCATTTC+CGG | - | chr5_3:11122093-11122112 | None:intergenic | 30.0% | |
GAAATGACCTATATTACAGA+GGG | + | chr5_3:11122093-11122112 | Msa0798380:intron | 30.0% | |
! | GTTTTTACCCTCTGTAATAT+AGG | - | chr5_3:11122103-11122122 | None:intergenic | 30.0% |
CATTCTTAACAAATTAGACC+GGG | - | chr5_3:11122179-11122198 | None:intergenic | 30.0% | |
!! | ACGCATGTAATTTTAGTGAA+TGG | + | chr5_3:11122272-11122291 | Msa0798380:intron | 30.0% |
!! | TGTAATTTTAGTGAATGGCA+TGG | + | chr5_3:11122277-11122296 | Msa0798380:intron | 30.0% |
!!! | ACTAGGGTACCATTTTTTTA+TGG | + | chr5_3:11122328-11122347 | Msa0798380:intron | 30.0% |
!!! | CTAGGGTACCATTTTTTTAT+GGG | + | chr5_3:11122329-11122348 | Msa0798380:intron | 30.0% |
! | TTTTGACGCCCATAAAAAAA+TGG | - | chr5_3:11122340-11122359 | None:intergenic | 30.0% |
!! | ACTACTTTATTGATTTGCTG+AGG | + | chr5_3:11122521-11122540 | Msa0798380:intron | 30.0% |
ATCTAAACATTCACAAGGAT+CGG | - | chr5_3:11122565-11122584 | None:intergenic | 30.0% | |
TATTGAAAGATACCGAAGTA+TGG | + | chr5_3:11122700-11122719 | Msa0798380:CDS | 30.0% | |
ATTGAAAGATACCGAAGTAT+GGG | + | chr5_3:11122701-11122720 | Msa0798380:CDS | 30.0% | |
! | TTGTGTCTAGCTAATTTTGT+TGG | - | chr5_3:11122862-11122881 | None:intergenic | 30.0% |
TGCTTAAAAAATTGCTTGGT+TGG | + | chr5_3:11122899-11122918 | Msa0798380:intron | 30.0% | |
!! | TATGAATTGGTCTTGACTTT+AGG | + | chr5_3:11122935-11122954 | Msa0798380:CDS | 30.0% |
CTTTATAGAAGATTTGTCTG+AGG | + | chr5_3:11122973-11122992 | Msa0798380:CDS | 30.0% | |
! | CTGATTCATATCCTTCTTTT+GGG | - | chr5_3:11123009-11123028 | None:intergenic | 30.0% |
!! | ACTGATTCATATCCTTCTTT+TGG | - | chr5_3:11123010-11123029 | None:intergenic | 30.0% |
TATTGTTGCTAATAAGGACT+TGG | + | chr5_3:11123042-11123061 | Msa0798380:CDS | 30.0% | |
TTTATGAGTGATATCAAGGA+GGG | - | chr5_3:11123185-11123204 | None:intergenic | 30.0% | |
ATTTATGAGTGATATCAAGG+AGG | - | chr5_3:11123186-11123205 | None:intergenic | 30.0% | |
! | GGAAGTATACTTAATCGATA+TGG | + | chr5_3:11123299-11123318 | Msa0798380:intron | 30.0% |
! | CTCAAAAGGGTCTTATAATT+AGG | - | chr5_3:11123630-11123649 | None:intergenic | 30.0% |
ATGTAGTTGGAAATAGCAAA+GGG | - | chr5_3:11123680-11123699 | None:intergenic | 30.0% | |
AATGTAGTTGGAAATAGCAA+AGG | - | chr5_3:11123681-11123700 | None:intergenic | 30.0% | |
! | AATAACGGGAATTAAGATAG+TGG | - | chr5_3:11123855-11123874 | None:intergenic | 30.0% |
!! | GACCCTTTTGAAAAAATAAC+GGG | - | chr5_3:11123869-11123888 | None:intergenic | 30.0% |
!! | GGACCCTTTTGAAAAAATAA+CGG | - | chr5_3:11123870-11123889 | None:intergenic | 30.0% |
TTCAAAAGGGTCCTATAATT+AGG | + | chr5_3:11123877-11123896 | Msa0798380:intron | 30.0% | |
TCAAAAGGGTCCTATAATTA+GGG | + | chr5_3:11123878-11123897 | Msa0798380:intron | 30.0% | |
! | GAAGTGTTTGGTAAAATTAG+CGG | + | chr5_3:11124302-11124321 | Msa0798380:intron | 30.0% |
GTTCGCAAAGAAAGAAAAAA+TGG | + | chr5_3:11124569-11124588 | Msa0798380:intron | 30.0% | |
TGTGTGACACTGAAAATAAT+TGG | + | chr5_3:11124629-11124648 | Msa0798380:intron | 30.0% | |
GTGTGACACTGAAAATAATT+GGG | + | chr5_3:11124630-11124649 | Msa0798380:intron | 30.0% | |
TGAAAATAATTGGGATTGAG+TGG | + | chr5_3:11124639-11124658 | Msa0798380:intron | 30.0% | |
GAAAATAATTGGGATTGAGT+GGG | + | chr5_3:11124640-11124659 | Msa0798380:intron | 30.0% | |
ACAATCTGTCAAAATGCATA+CGG | - | chr5_3:11125003-11125022 | None:intergenic | 30.0% | |
! | ATACATGACAGGAAAGTTTT+TGG | - | chr5_3:11125026-11125045 | None:intergenic | 30.0% |
! | TGTCTCTAGAAATTACCAAT+AGG | + | chr5_3:11125050-11125069 | Msa0798380:intron | 30.0% |
TCTAGAAATTACCAATAGGA+AGG | + | chr5_3:11125054-11125073 | Msa0798380:intron | 30.0% | |
AGAGTAACTGGATTGTTAAT+GGG | - | chr5_3:11125124-11125143 | None:intergenic | 30.0% | |
TTCACACAAATGAGAGATTT+AGG | - | chr5_3:11125250-11125269 | None:intergenic | 30.0% | |
CTCATTTGTGTGAATTTCAA+TGG | + | chr5_3:11125256-11125275 | Msa0798380:intron | 30.0% | |
AAATCCAAAATGAGTTTGGT+AGG | - | chr5_3:11125389-11125408 | None:intergenic | 30.0% | |
TGTCAAATCCAAAATGAGTT+TGG | - | chr5_3:11125393-11125412 | None:intergenic | 30.0% | |
! | GAACAAAATGCTTCTGTTTT+TGG | - | chr5_3:11125478-11125497 | None:intergenic | 30.0% |
! | AAGCATTTTGTTCTAGTACA+TGG | + | chr5_3:11125485-11125504 | Msa0798380:CDS | 30.0% |
! | TTTTTCATTTGGATCAAGTG+AGG | - | chr5_3:11125675-11125694 | None:intergenic | 30.0% |
ACTTGATCCAAATGAAAAAG+TGG | + | chr5_3:11125676-11125695 | Msa0798380:CDS | 30.0% | |
!!! | ACAAGAACCACTTTTTCATT+TGG | - | chr5_3:11125686-11125705 | None:intergenic | 30.0% |
AATGAAAAAGTGGTTCTTGT+TGG | + | chr5_3:11125686-11125705 | Msa0798380:CDS | 30.0% | |
TAAAAAAATACGTCAACAGC+AGG | + | chr5_3:11126075-11126094 | Msa0798380:intron | 30.0% | |
!!! | TGCTGTTGACGTATTTTTTT+AGG | - | chr5_3:11126076-11126095 | None:intergenic | 30.0% |
TAAAAAAATACGTCAACAGC+AGG | + | chr5_3:11126075-11126094 | Msa0798380:intron | 30.0% | |
AAAAAAATACGTCAACAGCA+GGG | + | chr5_3:11126076-11126095 | Msa0798380:intron | 30.0% | |
! | ACTTGGATCATTTTGTGATA+TGG | + | chr5_3:11126412-11126431 | Msa0798380:intron | 30.0% |
ATAGTATATTGAGAGATACC+CGG | + | chr5_3:11126435-11126454 | Msa0798380:intron | 30.0% | |
! | TTAGACACTGAGTTTTCATT+TGG | + | chr5_3:11126469-11126488 | Msa0798380:CDS | 30.0% |
GTAAAAACTGCAAAGATAGA+TGG | - | chr5_3:11126581-11126600 | None:intergenic | 30.0% | |
AATTACGCGATTAGTAAAAC+TGG | + | chr5_3:11126673-11126692 | Msa0798380:intron | 30.0% | |
! | CCGTCACAATATATGATTTT+TGG | - | chr5_3:11126881-11126900 | None:intergenic | 30.0% |
!! | GTGAAGATTTTAATAAGGAC+AGG | + | chr5_3:11126935-11126954 | Msa0798380:intron | 30.0% |
TATTGTTGCAAATGATGACT+TGG | + | chr5_3:11127033-11127052 | Msa0798380:CDS | 30.0% | |
AGAGATAAACAAAGTTCTTG+AGG | - | chr5_3:11127157-11127176 | None:intergenic | 30.0% | |
! | ATGCATTTTGTTCTGGTACA+TGG | + | chr5_3:11121242-11121261 | Msa0798380:CDS | 35.0% |
TGCTTATAATAGTGACTGGA+GGG | - | chr5_3:11121736-11121755 | None:intergenic | 35.0% | |
TTGCTTATAATAGTGACTGG+AGG | - | chr5_3:11121737-11121756 | None:intergenic | 35.0% | |
CATTCATTAGATGATGCATG+TGG | + | chr5_3:11121774-11121793 | Msa0798380:intron | 35.0% | |
!! | TCGTTTTTGTTTGGCCTATT+AGG | - | chr5_3:11121956-11121975 | None:intergenic | 35.0% |
!! | TGGTTTTTGTTTGGCCTATT+AGG | + | chr5_3:11122003-11122022 | Msa0798380:intron | 35.0% |
!! | GGTTTTTGTTTGGCCTATTA+GGG | + | chr5_3:11122004-11122023 | Msa0798380:intron | 35.0% |
!! | GTTTTTGTTTGGCCTATTAG+GGG | + | chr5_3:11122005-11122024 | Msa0798380:intron | 35.0% |
!! | TTTTTGTTTGGCCTATTAGG+GGG | + | chr5_3:11122006-11122025 | Msa0798380:intron | 35.0% |
!!! | TTTTGATTTACCCCCCTAAT+AGG | - | chr5_3:11122020-11122039 | None:intergenic | 35.0% |
CAAAAAAAAATTACAGGGGG+GGG | + | chr5_3:11122064-11122083 | Msa0798380:intron | 35.0% | |
GGAAATGACCTATATTACAG+AGG | + | chr5_3:11122092-11122111 | Msa0798380:intron | 35.0% | |
ATACTATCCATAACACCCAA+AGG | - | chr5_3:11122681-11122700 | None:intergenic | 35.0% | |
! | TTGCTTGGTTGGAATTTTGT+AGG | + | chr5_3:11122910-11122929 | Msa0798380:intron | 35.0% |
!! | AATTGGTCTTGACTTTAGGA+AGG | + | chr5_3:11122939-11122958 | Msa0798380:CDS | 35.0% |
GCTGAAAATTTCCCAAAAGA+AGG | + | chr5_3:11122995-11123014 | Msa0798380:CDS | 35.0% | |
TTAGCAACAATATAAGCACG+AGG | - | chr5_3:11123034-11123053 | None:intergenic | 35.0% | |
TATTGGATGATCCAAAATGC+TGG | + | chr5_3:11123085-11123104 | Msa0798380:CDS | 35.0% | |
ATTGGATGATCCAAAATGCT+GGG | + | chr5_3:11123086-11123105 | Msa0798380:CDS | 35.0% | |
TATCAAGGAGGGATAAGTAA+AGG | - | chr5_3:11123174-11123193 | None:intergenic | 35.0% | |
! | AAGGGTCTTATAATTAGGGA+CGG | - | chr5_3:11123625-11123644 | None:intergenic | 35.0% |
! | GCAAAGGGGTCTTATAAAAA+GGG | - | chr5_3:11123665-11123684 | None:intergenic | 35.0% |
! | AGCAAAGGGGTCTTATAAAA+AGG | - | chr5_3:11123666-11123685 | None:intergenic | 35.0% |
TGTAGTTGGAAATAGCAAAG+GGG | - | chr5_3:11123679-11123698 | None:intergenic | 35.0% | |
AAACCAACTCTCTCTCTTAA+AGG | + | chr5_3:11123780-11123799 | Msa0798380:intron | 35.0% | |
! | TATCCTTTAAGAGAGAGAGT+TGG | - | chr5_3:11123786-11123805 | None:intergenic | 35.0% |
TGAGTGGTCCAAATAATATG+CGG | + | chr5_3:11123930-11123949 | Msa0798380:intron | 35.0% | |
AAGGATCTCCGCATATTATT+TGG | - | chr5_3:11123941-11123960 | None:intergenic | 35.0% | |
! | AATATGCGGAGATCCTTTTA+AGG | + | chr5_3:11123944-11123963 | Msa0798380:intron | 35.0% |
! | ATATGCGGAGATCCTTTTAA+GGG | + | chr5_3:11123945-11123964 | Msa0798380:intron | 35.0% |
AGATAGTGAATCCCCTTAAA+AGG | - | chr5_3:11123960-11123979 | None:intergenic | 35.0% | |
!! | ATACGATGGGGTTGTTATTT+AGG | + | chr5_3:11124194-11124213 | Msa0798380:intron | 35.0% |
!! | GTTGTTATTTAGGCTCTGTT+TGG | + | chr5_3:11124204-11124223 | Msa0798380:intron | 35.0% |
GCTCTGTTTGGTAAAAATAG+CGG | + | chr5_3:11124216-11124235 | Msa0798380:intron | 35.0% | |
! | GATAAGCTAGTTGAAGTGTT+TGG | + | chr5_3:11124290-11124309 | Msa0798380:intron | 35.0% |
!! | TCATCTTCTAGCATTGACAA+GGG | - | chr5_3:11124499-11124518 | None:intergenic | 35.0% |
!! | ATCATCTTCTAGCATTGACA+AGG | - | chr5_3:11124500-11124519 | None:intergenic | 35.0% |
AATGCTAGAAGATGATGAAG+AGG | + | chr5_3:11124504-11124523 | Msa0798380:intron | 35.0% | |
CTCTTTCATTTCACGTTTCT+GGG | - | chr5_3:11124718-11124737 | None:intergenic | 35.0% | |
TCTCTTTCATTTCACGTTTC+TGG | - | chr5_3:11124719-11124738 | None:intergenic | 35.0% | |
GAGAAGATTAAGGGCAAAAA+TGG | + | chr5_3:11124735-11124754 | Msa0798380:intron | 35.0% | |
CTATAAGCTCAAACGTTACT+TGG | + | chr5_3:11124805-11124824 | Msa0798380:intron | 35.0% | |
! | TTGACAAAAGTAGCTCTGTT+TGG | - | chr5_3:11124877-11124896 | None:intergenic | 35.0% |
AAACTAGAAGCTCATTTACG+TGG | + | chr5_3:11124921-11124940 | Msa0798380:intron | 35.0% | |
AGAGACAATGTATACATGAC+AGG | - | chr5_3:11125037-11125056 | None:intergenic | 35.0% | |
! | AACTGGATTGTTAATGGGTA+AGG | - | chr5_3:11125119-11125138 | None:intergenic | 35.0% |
GAGAGTAACTGGATTGTTAA+TGG | - | chr5_3:11125125-11125144 | None:intergenic | 35.0% | |
CACGAAGACATTTAAGCATA+TGG | + | chr5_3:11125144-11125163 | Msa0798380:intron | 35.0% | |
ATGTTTAGGCCGAAATTGTT+AGG | + | chr5_3:11125191-11125210 | Msa0798380:intron | 35.0% | |
ATCTCCATGCCTAACAATTT+CGG | - | chr5_3:11125203-11125222 | None:intergenic | 35.0% | |
! | AATGATCCATTAGTCTAGCA+CGG | + | chr5_3:11125362-11125381 | Msa0798380:intron | 35.0% |
AAACCACAGTTAGAATCTGT+AGG | + | chr5_3:11125542-11125561 | Msa0798380:CDS | 35.0% | |
AATGAGTATAGCTCTTGCAA+TGG | + | chr5_3:11125724-11125743 | Msa0798380:CDS | 35.0% | |
TATCAGGAATAAAAGCTGCT+AGG | - | chr5_3:11125784-11125803 | None:intergenic | 35.0% | |
!! | TCCATCATATGTTCTAGAAC+AGG | + | chr5_3:11125814-11125833 | Msa0798380:CDS | 35.0% |
!! | ACCTGTTCTAGAACATATGA+TGG | - | chr5_3:11125818-11125837 | None:intergenic | 35.0% |
AGACAGACTTGAAATCTGTT+GGG | - | chr5_3:11126148-11126167 | None:intergenic | 35.0% | |
TTTATTTACCTGACCTGACT+TGG | + | chr5_3:11126395-11126414 | Msa0798380:intron | 35.0% | |
ATCACAAAATGATCCAAGTC+AGG | - | chr5_3:11126411-11126430 | None:intergenic | 35.0% | |
AACAAAATGCTGTTGTTACC+TGG | + | chr5_3:11126496-11126515 | Msa0798380:CDS | 35.0% | |
ACAGGGTCTTACATATTTAG+AGG | - | chr5_3:11126630-11126649 | None:intergenic | 35.0% | |
TGAAGCGAAGAATTTATCCA+AGG | + | chr5_3:11126982-11127001 | Msa0798380:CDS | 35.0% | |
AATTTATCCAAGGAGGGATA+TGG | + | chr5_3:11126992-11127011 | Msa0798380:CDS | 35.0% | |
ATTTATCCAAGGAGGGATAT+GGG | + | chr5_3:11126993-11127012 | Msa0798380:CDS | 35.0% | |
AATGGATGATCCAAAATGCT+GGG | + | chr5_3:11127077-11127096 | Msa0798380:CDS | 35.0% | |
GATTAATGGAGCAGATCATA+TGG | + | chr5_3:11127117-11127136 | Msa0798380:CDS | 35.0% | |
TTTGTTCTGGTACATGGTTC+TGG | + | chr5_3:11121248-11121267 | Msa0798380:CDS | 40.0% | |
CTTAAGCTTGTACCAATTCC+AGG | - | chr5_3:11121282-11121301 | None:intergenic | 40.0% | |
ATTGGTACAAGCTTAAGCCA+CGG | + | chr5_3:11121285-11121304 | Msa0798380:CDS | 40.0% | |
GTTAGAATCATCTGGTCACA+AGG | + | chr5_3:11121307-11121326 | Msa0798380:CDS | 40.0% | |
AATGAGTATAGCCCTTGCAA+TGG | + | chr5_3:11121481-11121500 | Msa0798380:intron | 40.0% | |
! | GACATAAGATGGTTTGTGGT+GGG | - | chr5_3:11121564-11121583 | None:intergenic | 40.0% |
GTAGGACATAAGATGGTTTG+TGG | - | chr5_3:11121568-11121587 | None:intergenic | 40.0% | |
ACCATCTTATGTCCTACAAC+TGG | + | chr5_3:11121571-11121590 | Msa0798380:CDS | 40.0% | |
ACCAGTTGTAGGACATAAGA+TGG | - | chr5_3:11121575-11121594 | None:intergenic | 40.0% | |
TTGCTTATAATAGTGACCGG+AGG | + | chr5_3:11121851-11121870 | Msa0798380:intron | 40.0% | |
TGCTTATAATAGTGACCGGA+GGG | + | chr5_3:11121852-11121871 | Msa0798380:intron | 40.0% | |
!! | TTTTGTTTGGCCTATTAGGG+GGG | + | chr5_3:11122007-11122026 | Msa0798380:intron | 40.0% |
AAAGATACCGAAGTATGGGA+TGG | + | chr5_3:11122705-11122724 | Msa0798380:CDS | 40.0% | |
AGTCTAACCATCCCATACTT+CGG | - | chr5_3:11122715-11122734 | None:intergenic | 40.0% | |
AACATTGTGGACAGTAGCTT+GGG | - | chr5_3:11122782-11122801 | None:intergenic | 40.0% | |
! | ACTGAGTTGGAAGAACATTG+TGG | - | chr5_3:11122795-11122814 | None:intergenic | 40.0% |
! | TTCCAGTGGAGTATCAGTAT+TGG | + | chr5_3:11123068-11123087 | Msa0798380:CDS | 40.0% |
ATCCAATACTGATACTCCAC+TGG | - | chr5_3:11123073-11123092 | None:intergenic | 40.0% | |
! | CCATATCAATCCCAGCATTT+TGG | - | chr5_3:11123099-11123118 | None:intergenic | 40.0% |
CCAAAATGCTGGGATTGATA+TGG | + | chr5_3:11123096-11123115 | Msa0798380:CDS | 40.0% | |
TGGGATTGATATGGTGAAAG+TGG | + | chr5_3:11123105-11123124 | Msa0798380:intron | 40.0% | |
AGGGATAAGTAAAGGTCTTG+AGG | - | chr5_3:11123166-11123185 | None:intergenic | 40.0% | |
AAGGGTCCTATAATTAGGGA+CGG | + | chr5_3:11123882-11123901 | Msa0798380:intron | 40.0% | |
! | TATGCGGAGATCCTTTTAAG+GGG | + | chr5_3:11123946-11123965 | Msa0798380:intron | 40.0% |
TAAGGGGATTCACTATCTTC+TGG | + | chr5_3:11123962-11123981 | Msa0798380:intron | 40.0% | |
AATAATTGGGATTGAGTGGG+TGG | + | chr5_3:11124643-11124662 | Msa0798380:intron | 40.0% | |
! | TGGGACAATAGTCTTTTGGT+CGG | - | chr5_3:11124961-11124980 | None:intergenic | 40.0% |
! | TGGTTGGGACAATAGTCTTT+TGG | - | chr5_3:11124965-11124984 | None:intergenic | 40.0% |
!! | TGCATACGGTGCCATTAATT+GGG | - | chr5_3:11124989-11125008 | None:intergenic | 40.0% |
!! | ATGCATACGGTGCCATTAAT+TGG | - | chr5_3:11124990-11125009 | None:intergenic | 40.0% |
! | AGTCAAACAAGTTGGCTCAA+TGG | - | chr5_3:11125082-11125101 | None:intergenic | 40.0% |
! | TAATGGGTAAGGCGATTTGT+GGG | - | chr5_3:11125108-11125127 | None:intergenic | 40.0% |
! | TTAATGGGTAAGGCGATTTG+TGG | - | chr5_3:11125109-11125128 | None:intergenic | 40.0% |
AATGTCTTCGTGAGAGTAAC+TGG | - | chr5_3:11125136-11125155 | None:intergenic | 40.0% | |
GTTAGGCATGGAGATATCTA+CGG | + | chr5_3:11125208-11125227 | Msa0798380:intron | 40.0% | |
TGACCTACAGATTCTAACTG+TGG | - | chr5_3:11125548-11125567 | None:intergenic | 40.0% | |
GAGGCTAAGAACTCTAACAA+AGG | - | chr5_3:11125656-11125675 | None:intergenic | 40.0% | |
GTTCTTGTTGGACATAGCTT+TGG | + | chr5_3:11125698-11125717 | Msa0798380:CDS | 40.0% | |
!! | GATGGATTGTGTTGAGTATC+AGG | - | chr5_3:11125800-11125819 | None:intergenic | 40.0% |
GAGACAGACTTGAAATCTGT+TGG | - | chr5_3:11126149-11126168 | None:intergenic | 40.0% | |
TCAATATGTCCGAGTGGTTA+AGG | - | chr5_3:11126171-11126190 | None:intergenic | 40.0% | |
AATCAGTCAATATGTCCGAG+TGG | - | chr5_3:11126177-11126196 | None:intergenic | 40.0% | |
AAAATGATCCAAGTCAGGTC+AGG | - | chr5_3:11126406-11126425 | None:intergenic | 40.0% | |
! | GACACTGAGTTTTCATTTGG+TGG | + | chr5_3:11126472-11126491 | Msa0798380:CDS | 40.0% |
GGCACAATTAAGTACCTCAA+TGG | - | chr5_3:11126560-11126579 | None:intergenic | 40.0% | |
AATCCTGCAAAGTCCACAAT+GGG | - | chr5_3:11126907-11126926 | None:intergenic | 40.0% | |
AAATCCTGCAAAGTCCACAA+TGG | - | chr5_3:11126908-11126927 | None:intergenic | 40.0% | |
ATTGTGGACTTTGCAGGATT+TGG | + | chr5_3:11126907-11126926 | Msa0798380:intron | 40.0% | |
! | GACTTTGCAGGATTTGGAAT+TGG | + | chr5_3:11126913-11126932 | Msa0798380:intron | 40.0% |
!!! | GACAGGATCACTTTTTCTTG+AGG | + | chr5_3:11126952-11126971 | Msa0798380:intron | 40.0% |
AGCGAAGAATTTATCCAAGG+AGG | + | chr5_3:11126985-11127004 | Msa0798380:CDS | 40.0% | |
GCGAAGAATTTATCCAAGGA+GGG | + | chr5_3:11126986-11127005 | Msa0798380:CDS | 40.0% | |
TTTGCAACAATACAAGCACG+TGG | - | chr5_3:11127025-11127044 | None:intergenic | 40.0% | |
TTCCACTGGAGTATGAACAA+TGG | + | chr5_3:11127059-11127078 | Msa0798380:CDS | 40.0% | |
ATCCATTGTTCATACTCCAG+TGG | - | chr5_3:11127064-11127083 | None:intergenic | 40.0% | |
CAATGGATGATCCAAAATGC+TGG | + | chr5_3:11127076-11127095 | Msa0798380:CDS | 40.0% | |
GATGCGGTGAAAGTGATTAA+TGG | + | chr5_3:11127103-11127122 | Msa0798380:CDS | 40.0% | |
AAGCCACGGTTAGAATCATC+TGG | + | chr5_3:11121299-11121318 | Msa0798380:CDS | 45.0% | |
TGACCAGATGATTCTAACCG+TGG | - | chr5_3:11121305-11121324 | None:intergenic | 45.0% | |
GTTCTTGTGGGACATAGCTT+TGG | + | chr5_3:11121455-11121474 | Msa0798380:CDS | 45.0% | |
! | GGACATAAGATGGTTTGTGG+TGG | - | chr5_3:11121565-11121584 | None:intergenic | 45.0% |
! | CTGGAGGGTGTATATTACAG+AGG | - | chr5_3:11121721-11121740 | None:intergenic | 45.0% |
TACCTGACCTTTGGGTGTTA+TGG | + | chr5_3:11122671-11122690 | Msa0798380:intron | 45.0% | |
ATCCATAACACCCAAAGGTC+AGG | - | chr5_3:11122676-11122695 | None:intergenic | 45.0% | |
TATGGGATGGTTAGACTCTG+AGG | + | chr5_3:11122718-11122737 | Msa0798380:CDS | 45.0% | |
!! | GACTCTGAGGTCTCATTTGA+TGG | + | chr5_3:11122731-11122750 | Msa0798380:CDS | 45.0% |
GAACATTGTGGACAGTAGCT+TGG | - | chr5_3:11122783-11122802 | None:intergenic | 45.0% | |
!! | GTCCCAGAGAGGTATCTTTA+TGG | + | chr5_3:11122813-11122832 | Msa0798380:intron | 45.0% |
CGCCATAAAGATACCTCTCT+GGG | - | chr5_3:11122818-11122837 | None:intergenic | 45.0% | |
ACGCCATAAAGATACCTCTC+TGG | - | chr5_3:11122819-11122838 | None:intergenic | 45.0% | |
TAAGGACTTGGCAATTCCAG+TGG | + | chr5_3:11123054-11123073 | Msa0798380:CDS | 45.0% | |
! | GGTCTTATAATTAGGGACGG+AGG | - | chr5_3:11123622-11123641 | None:intergenic | 45.0% |
CTACCTCCGTCCCTAATTAT+AGG | - | chr5_3:11123616-11123635 | None:intergenic | 45.0% | |
CCAAAGAAGAACGTGTGTGT+TGG | - | chr5_3:11124416-11124435 | None:intergenic | 45.0% | |
CCAACACACACGTTCTTCTT+TGG | + | chr5_3:11124413-11124432 | Msa0798380:intron | 45.0% | |
! | GGGACAATAGTCTTTTGGTC+GGG | - | chr5_3:11124960-11124979 | None:intergenic | 45.0% |
TGCCATTAATTGGGGTGGTT+GGG | - | chr5_3:11124980-11124999 | None:intergenic | 45.0% | |
!! | GCATACGGTGCCATTAATTG+GGG | - | chr5_3:11124988-11125007 | None:intergenic | 45.0% |
GCTCAATGGTTCCTTCCTAT+TGG | - | chr5_3:11125068-11125087 | None:intergenic | 45.0% | |
GTGGGTCAAGTCAAACAAGT+TGG | - | chr5_3:11125090-11125109 | None:intergenic | 45.0% | |
TAGGCCGAAATTGTTAGGCA+TGG | + | chr5_3:11125196-11125215 | Msa0798380:intron | 45.0% | |
! | CGGACCTACCAAACTCATTT+TGG | + | chr5_3:11125382-11125401 | Msa0798380:intron | 45.0% |
! | CTAGTACATGGTGTTAGCGT+TGG | + | chr5_3:11125497-11125516 | Msa0798380:CDS | 45.0% |
!! | CTTGTTGGACATAGCTTTGG+AGG | + | chr5_3:11125701-11125720 | Msa0798380:CDS | 45.0% |
AGTCTGTCTCCTTAACCACT+CGG | + | chr5_3:11126159-11126178 | Msa0798380:intron | 45.0% | |
ATTGAGAGATACCCGGTTAC+TGG | + | chr5_3:11126442-11126461 | Msa0798380:CDS | 45.0% | |
TGTCTAACCATCCAGTAACC+GGG | - | chr5_3:11126456-11126475 | None:intergenic | 45.0% | |
GTGTCTAACCATCCAGTAAC+CGG | - | chr5_3:11126457-11126476 | None:intergenic | 45.0% | |
GTAGACAAGAACTTTGAGCC+AGG | - | chr5_3:11126517-11126536 | None:intergenic | 45.0% | |
CTTTCAACTCTGCTCCATTG+AGG | + | chr5_3:11126543-11126562 | Msa0798380:CDS | 45.0% | |
ATCCTGCAAAGTCCACAATG+GGG | - | chr5_3:11126906-11126925 | None:intergenic | 45.0% | |
! | TGATGACTTGGCAATTCCAC+TGG | + | chr5_3:11127045-11127064 | Msa0798380:CDS | 45.0% |
CCAAAATGCTGGGATTGATG+CGG | + | chr5_3:11127087-11127106 | Msa0798380:CDS | 45.0% | |
!! | TAAATAAAAAAAAATTTACA+GGG | - | chr5_3:11121899-11121918 | None:intergenic | 5.0% |
!! | TTGAAAAAATAAAATAAAAT+TGG | + | chr5_3:11121983-11122002 | Msa0798380:intron | 5.0% |
!!! | AACTTTTTTTTTATATATAT+TGG | + | chr5_3:11123409-11123428 | Msa0798380:intron | 5.0% |
!! | TCTGGTACATGGTTCTGGCA+TGG | + | chr5_3:11121253-11121272 | Msa0798380:CDS | 50.0% |
!! | CTGGTACATGGTTCTGGCAT+GGG | + | chr5_3:11121254-11121273 | Msa0798380:CDS | 50.0% |
GCACTTGATCTTGCAGCTAG+TGG | + | chr5_3:11121335-11121354 | Msa0798380:CDS | 50.0% | |
AGCTAGTGGCATCAACACTC+AGG | + | chr5_3:11121349-11121368 | Msa0798380:CDS | 50.0% | |
!! | CTTGTGGGACATAGCTTTGG+AGG | + | chr5_3:11121458-11121477 | Msa0798380:CDS | 50.0% |
!! | GATGGTTTGTGGTGGGTATC+AGG | - | chr5_3:11121557-11121576 | None:intergenic | 50.0% |
! | TAATAGTGACCGGAGGGTGT+AGG | + | chr5_3:11121858-11121877 | Msa0798380:intron | 50.0% |
CGAAAATGACCTACACCCTC+CGG | - | chr5_3:11121870-11121889 | None:intergenic | 50.0% | |
AAATTACAGGGGGGGGAAAC+CGG | + | chr5_3:11122071-11122090 | Msa0798380:intron | 50.0% | |
TTAGTGAATGGCATGGCCCT+AGG | + | chr5_3:11122284-11122303 | Msa0798380:intron | 50.0% | |
TAGTGAATGGCATGGCCCTA+GGG | + | chr5_3:11122285-11122304 | Msa0798380:intron | 50.0% | |
!! | ATACCTCTCTGGGACTGAGT+TGG | - | chr5_3:11122808-11122827 | None:intergenic | 50.0% |
GGTCCTATAATTAGGGACGG+AGG | + | chr5_3:11123885-11123904 | Msa0798380:intron | 50.0% | |
! | GTCTTTTGGTCGGGTCTGTT+TGG | - | chr5_3:11124951-11124970 | None:intergenic | 50.0% |
GTCCCAACCACCCCAATTAA+TGG | + | chr5_3:11124975-11124994 | Msa0798380:intron | 50.0% | |
! | GTGCCATTAATTGGGGTGGT+TGG | - | chr5_3:11124981-11125000 | None:intergenic | 50.0% |
!! | TACGGTGCCATTAATTGGGG+TGG | - | chr5_3:11124985-11125004 | None:intergenic | 50.0% |
GTAGGTCCGTGCTAGACTAA+TGG | - | chr5_3:11125371-11125390 | None:intergenic | 50.0% | |
! | ATGGTGTTAGCGTTGGAGCT+TGG | + | chr5_3:11125504-11125523 | Msa0798380:CDS | 50.0% |
! | TTAGCGTTGGAGCTTGGAGT+TGG | + | chr5_3:11125510-11125529 | Msa0798380:CDS | 50.0% |
ACACTTGACCTTGCAGCTAG+TGG | + | chr5_3:11125578-11125597 | Msa0798380:intron | 50.0% | |
TGTTGATGCCACTAGCTGCA+AGG | - | chr5_3:11121346-11121365 | None:intergenic | 50.0% | |
AGAGATACCCGGTTACTGGA+TGG | + | chr5_3:11126446-11126465 | Msa0798380:CDS | 50.0% | |
ATCCAAGGAGGGATATGGGT+CGG | + | chr5_3:11126997-11127016 | Msa0798380:CDS | 50.0% | |
! | CCGCATCAATCCCAGCATTT+TGG | - | chr5_3:11127090-11127109 | None:intergenic | 50.0% |
AGTGAATGGCATGGCCCTAG+GGG | + | chr5_3:11122286-11122305 | Msa0798380:intron | 55.0% | |
CTTCCAACTCAGTCCCAGAG+AGG | + | chr5_3:11122802-11122821 | Msa0798380:CDS | 55.0% | |
GGTCGAGAGAGCAGATCACA+TGG | + | chr5_3:11123126-11123145 | Msa0798380:intron | 55.0% | |
TTGGGATTGAGTGGGTGGAC+TGG | + | chr5_3:11124648-11124667 | Msa0798380:intron | 55.0% | |
ATTGTGACGGTGCCCCATTG+TGG | + | chr5_3:11126891-11126910 | Msa0798380:intron | 55.0% | |
TGCCCCATTGTGGACTTTGC+AGG | + | chr5_3:11126901-11126920 | Msa0798380:intron | 55.0% | |
AACCGACCCATATCCCTCCT+TGG | - | chr5_3:11127002-11127021 | None:intergenic | 55.0% | |
!! | ATGGTTCTGGCATGGGTGCC+TGG | + | chr5_3:11121261-11121280 | Msa0798380:CDS | 60.0% |
CTGGCATGGGTGCCTGGAAT+TGG | + | chr5_3:11121267-11121286 | Msa0798380:CDS | 60.0% | |
GCGGGAGGGGCAGTAAACTA+GGG | + | chr5_3:11122312-11122331 | Msa0798380:intron | 60.0% | |
!! | GGATTGAGTGGGTGGACTGG+TGG | + | chr5_3:11124651-11124670 | Msa0798380:intron | 60.0% |
AATGGCATGGCCCTAGGGGC+AGG | + | chr5_3:11122290-11122309 | Msa0798380:intron | 65.0% | |
GGCGGGAGGGGCAGTAAACT+AGG | + | chr5_3:11122311-11122330 | Msa0798380:intron | 65.0% | |
CAGCAGGGTTCGAACCTGCG+CGG | + | chr5_3:11126116-11126135 | Msa0798380:intron | 65.0% | |
AGCAGGGTTCGAACCTGCGC+GGG | + | chr5_3:11126117-11126136 | Msa0798380:intron | 65.0% | |
GGCATGGCCCTAGGGGCAGG+CGG | + | chr5_3:11122293-11122312 | Msa0798380:intron | 75.0% | |
GCATGGCCCTAGGGGCAGGC+GGG | + | chr5_3:11122294-11122313 | Msa0798380:intron | 75.0% | |
CTGTTGGGCTTCGCCCGCGC+AGG | - | chr5_3:11126133-11126152 | None:intergenic | 75.0% | |
! | TGGCCCTAGGGGCAGGCGGG+AGG | + | chr5_3:11122297-11122316 | Msa0798380:intron | 80.0% |
! | GGCCCTAGGGGCAGGCGGGA+GGG | + | chr5_3:11122298-11122317 | Msa0798380:intron | 80.0% |
! | GCCCTAGGGGCAGGCGGGAG+GGG | + | chr5_3:11122299-11122318 | Msa0798380:intron | 80.0% |
! | GCCCCTCCCGCCTGCCCCTA+GGG | - | chr5_3:11122303-11122322 | None:intergenic | 80.0% |
! | TGCCCCTCCCGCCTGCCCCT+AGG | - | chr5_3:11122304-11122323 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_3 | gene | 11121242 | 11127216 | 11121242 | ID=Msa0798380;Name=Msa0798380 |
chr5_3 | mRNA | 11121242 | 11127216 | 11121242 | ID=Msa0798380-mRNA-1;Parent=Msa0798380;Name=Msa0798380-mRNA-1;_AED=0.20;_eAED=0.21;_QI=0|0.42|0.25|1|0.42|0.37|8|0|450 |
chr5_3 | exon | 11121242 | 11121485 | 11121242 | ID=Msa0798380-mRNA-1:exon:4599;Parent=Msa0798380-mRNA-1 |
chr5_3 | exon | 11121528 | 11121592 | 11121528 | ID=Msa0798380-mRNA-1:exon:4600;Parent=Msa0798380-mRNA-1 |
chr5_3 | exon | 11122698 | 11122823 | 11122698 | ID=Msa0798380-mRNA-1:exon:4601;Parent=Msa0798380-mRNA-1 |
chr5_3 | exon | 11122932 | 11123117 | 11122932 | ID=Msa0798380-mRNA-1:exon:4602;Parent=Msa0798380-mRNA-1 |
chr5_3 | exon | 11125443 | 11125563 | 11125443 | ID=Msa0798380-mRNA-1:exon:4603;Parent=Msa0798380-mRNA-1 |
chr5_3 | exon | 11125594 | 11125835 | 11125594 | ID=Msa0798380-mRNA-1:exon:4604;Parent=Msa0798380-mRNA-1 |
chr5_3 | exon | 11126439 | 11126564 | 11126439 | ID=Msa0798380-mRNA-1:exon:4605;Parent=Msa0798380-mRNA-1 |
chr5_3 | exon | 11126974 | 11127216 | 11126974 | ID=Msa0798380-mRNA-1:exon:4606;Parent=Msa0798380-mRNA-1 |
chr5_3 | CDS | 11121242 | 11121485 | 11121242 | ID=Msa0798380-mRNA-1:cds;Parent=Msa0798380-mRNA-1 |
chr5_3 | CDS | 11121528 | 11121592 | 11121528 | ID=Msa0798380-mRNA-1:cds;Parent=Msa0798380-mRNA-1 |
chr5_3 | CDS | 11122698 | 11122823 | 11122698 | ID=Msa0798380-mRNA-1:cds;Parent=Msa0798380-mRNA-1 |
chr5_3 | CDS | 11122932 | 11123117 | 11122932 | ID=Msa0798380-mRNA-1:cds;Parent=Msa0798380-mRNA-1 |
chr5_3 | CDS | 11125443 | 11125563 | 11125443 | ID=Msa0798380-mRNA-1:cds;Parent=Msa0798380-mRNA-1 |
chr5_3 | CDS | 11125594 | 11125835 | 11125594 | ID=Msa0798380-mRNA-1:cds;Parent=Msa0798380-mRNA-1 |
chr5_3 | CDS | 11126439 | 11126564 | 11126439 | ID=Msa0798380-mRNA-1:cds;Parent=Msa0798380-mRNA-1 |
chr5_3 | CDS | 11126974 | 11127216 | 11126974 | ID=Msa0798380-mRNA-1:cds;Parent=Msa0798380-mRNA-1 |
Gene Sequence |
Protein sequence |