AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0127040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127040 MtrunA17_Chr1g0186001 100.000 203 0 0 1 203 1 203 2.38e-151 418
Msa0127040 MtrunA17_Chr8g0381851 65.550 209 58 5 1 203 1 201 4.61e-91 265
Msa0127040 MtrunA17_Chr4g0050311 74.843 159 35 2 35 188 9 167 5.12e-84 247
Msa0127040 MtrunA17_Chr1g0182761 61.350 163 56 1 46 201 105 267 9.52e-62 193
Msa0127040 MtrunA17_Chr1g0170731 57.609 92 32 1 101 192 3 87 8.74e-33 114
Msa0127040 MtrunA17_Chr3g0087861 36.842 171 96 6 43 203 454 622 2.68e-21 91.3
Msa0127040 MtrunA17_Chr8g0351991 36.800 125 68 4 79 197 623 742 2.09e-15 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127040 AT5G10350.2 68.599 207 56 4 1 203 1 202 3.44e-94 273
Msa0127040 AT5G65260.1 70.048 207 56 4 1 203 1 205 6.69e-94 273
Msa0127040 AT5G10350.1 68.599 207 56 4 1 203 1 202 9.99e-94 273
Msa0127040 AT5G51120.1 78.235 170 35 2 35 203 45 213 1.22e-92 270
Msa0127040 AT5G51120.2 63.285 207 38 2 35 203 45 251 2.95e-84 250
Msa0127040 AT5G51120.3 81.600 125 22 1 80 203 4 128 7.79e-71 212
Msa0127040 AT5G10350.4 72.840 81 18 3 127 203 1 81 4.53e-32 112
Msa0127040 AT5G10350.3 72.840 81 18 3 127 203 1 81 4.53e-32 112
Msa0127040 AT5G10350.5 72.840 81 18 3 127 203 1 81 4.53e-32 112
Msa0127040 AT5G10350.6 72.840 81 18 3 127 203 1 81 4.53e-32 112
Msa0127040 AT2G24350.2 32.857 140 80 6 35 165 254 388 4.18e-11 61.6
Msa0127040 AT2G24350.1 32.857 140 80 6 35 165 383 517 5.64e-11 61.2
Msa0127040 AT3G12640.1 30.827 133 81 2 66 187 452 584 9.14e-11 60.8

Find 51 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAAAAGAATAATATAAA+AGG 0.223665 1_3:+56259249 Msa0127040:intron
CAGGAAGAGCACGAAGTTTA+TGG 0.241947 1_3:+56259395 Msa0127040:CDS
ACAATATTGACAGACAAATT+TGG 0.277446 1_3:+56262203 Msa0127040:CDS
AAATGCTGTTGGACTTCTTC+AGG 0.339186 1_3:-56262152 None:intergenic
TCTTTCCACCATATGCTTAC+GGG 0.386901 1_3:+56262506 Msa0127040:CDS
GCAAAACGTACAAATGTTCC+TGG 0.402106 1_3:+56262418 Msa0127040:CDS
TTCTTTCCACCATATGCTTA+CGG 0.403589 1_3:+56262505 Msa0127040:CDS
TCTACATAAGCAAATCCTTT+CGG 0.404767 1_3:-56262230 None:intergenic
CCTAACCTTGGTGGTGTGAT+TGG 0.419662 1_3:-56259498 None:intergenic
TTCTGTATCTCAAGCTGAAA+AGG 0.437005 1_3:+56259847 Msa0127040:CDS
CTTCCGTACTGCTTCAATCC+AGG 0.447125 1_3:-56262436 None:intergenic
AAAGAGATGGGCGCTGTTCA+AGG 0.456481 1_3:+56259674 Msa0127040:CDS
AGACGATAGAGTAGCGAAGA+TGG 0.465591 1_3:+56259370 Msa0127040:exon
ATTAAAAGAATAATATAAAA+GGG 0.474005 1_3:+56259250 Msa0127040:intron
CTGCTGGTTTCCGCGGTAGG+AGG 0.481689 1_3:+56262464 Msa0127040:CDS
TCAAGCTGAAAAGGAGGAAG+TGG 0.486267 1_3:+56259856 Msa0127040:CDS
ATCCATGTCAACCTCTTCAT+CGG 0.493847 1_3:-56259429 None:intergenic
CTCCTACCGCGGAAACCAGC+AGG 0.495710 1_3:-56262463 None:intergenic
ATAGCTTACCCGTAAGCATA+TGG 0.502661 1_3:-56262514 None:intergenic
TCCATGTCAACCTCTTCATC+GGG 0.505267 1_3:-56259428 None:intergenic
GAACGACAAGGAGAAGAAGA+AGG 0.509991 1_3:+56259337 Msa0127040:five_prime_UTR
AAGAATGGTGCAGGCATGAA+AGG 0.514431 1_3:-56262487 None:intergenic
TTAAATGAAACTGAATTGCA+TGG 0.518323 1_3:+56262290 Msa0127040:CDS
TAAGCATATGGTGGAAAGAA+TGG 0.526698 1_3:-56262502 None:intergenic
CACAGGACTGAAAATGCTGT+TGG 0.529319 1_3:-56262163 None:intergenic
TAGAGTAGCGAAGATGGAGC+AGG 0.531579 1_3:+56259376 Msa0127040:exon
GACAAATTTGGTCAACCGAA+AGG 0.538920 1_3:+56262215 Msa0127040:CDS
TATGGTGGAAAGAATGGTGC+AGG 0.545682 1_3:-56262496 None:intergenic
GCATGAAAGGCCTCCTACCG+CGG 0.549694 1_3:-56262474 None:intergenic
AACCCTAACCCTAACCTTGG+TGG 0.550125 1_3:-56259507 None:intergenic
GACTCTGTTCACAGTACCAC+AGG 0.550448 1_3:-56262180 None:intergenic
ATTGCATGGCCGACAGCTGA+AGG 0.563098 1_3:+56262304 Msa0127040:CDS
CAGTACGGAAGAAGACCTGC+TGG 0.568352 1_3:+56262448 Msa0127040:CDS
GACCTGCTGGTTTCCGCGGT+AGG 0.570934 1_3:+56262461 Msa0127040:CDS
AGCTAAGGTTGAGAAAGAGA+TGG 0.576917 1_3:+56259661 Msa0127040:CDS
GATGCTCGATCGATCTATGT+TGG 0.582767 1_3:+56259878 Msa0127040:CDS
GCTAAGGTTGAGAAAGAGAT+GGG 0.591216 1_3:+56259662 Msa0127040:CDS
TTGATGTTCAGCATCTATGT+CGG 0.596596 1_3:-56259453 None:intergenic
TCCCGATGAAGAGGTTGACA+TGG 0.607730 1_3:+56259427 Msa0127040:CDS
GTTCCTGGATTGAAGCAGTA+CGG 0.610328 1_3:+56262433 Msa0127040:CDS
TCTTCGCGAAATGCAAGCTA+AGG 0.612879 1_3:+56259646 Msa0127040:CDS
TGTATCTCAAGCTGAAAAGG+AGG 0.614985 1_3:+56259850 Msa0127040:CDS
TGAGATACAGAAGACCCAGC+AGG 0.620132 1_3:-56259836 None:intergenic
AATTGGAGGATATGAAGAAG+AGG 0.623414 1_3:+56259594 Msa0127040:CDS
AGAAGACCTGCTGGTTTCCG+CGG 0.627211 1_3:+56262457 Msa0127040:CDS
GCTTACCCGTAAGCATATGG+TGG 0.644904 1_3:-56262511 None:intergenic
GAAGAGGCTGAAAGAGATCG+AGG 0.648698 1_3:+56259610 Msa0127040:CDS
TGCTGACATTCCCGATGAAG+AGG 0.653227 1_3:+56259418 Msa0127040:CDS
CGCATCCAATCACACCACCA+AGG 0.672127 1_3:+56259493 Msa0127040:CDS
GAGAGAGTGAGAGAACGACA+AGG 0.682441 1_3:+56259325 Msa0127040:five_prime_UTR
ATAGATGCTGAACATCAAGA+AGG 0.684507 1_3:+56259458 Msa0127040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAGAATATTATTTTTTGA+AGG + chr1_3:56259226-56259245 Msa0127040:intron 10.0%
!! TTAATCATAAATAAAATCAA+AGG - chr1_3:56259922-56259941 None:intergenic 10.0%
!!! AAATGTTGATTTAATTTTTT+TGG + chr1_3:56260194-56260213 Msa0127040:intron 10.0%
!!! AATGTTGATTTAATTTTTTT+GGG + chr1_3:56260195-56260214 Msa0127040:intron 10.0%
!!! AAGATAGTTTTTTTAAAAAA+TGG - chr1_3:56260713-56260732 None:intergenic 10.0%
!! ATTATAAACATGTAAATATT+TGG - chr1_3:56261626-56261645 None:intergenic 10.0%
!! AATTTAATGTTTGGATTATT+GGG + chr1_3:56260145-56260164 Msa0127040:intron 15.0%
!!! ATGTTGATTTAATTTTTTTG+GGG + chr1_3:56260196-56260215 Msa0127040:intron 15.0%
!!! AAATGTTCTAAATTCTAATA+GGG - chr1_3:56260458-56260477 None:intergenic 15.0%
!!! TAGTTTTTTTAAAAAATGGA+AGG - chr1_3:56260709-56260728 None:intergenic 15.0%
!! TTAAAAAAACTATCTTGAAA+AGG + chr1_3:56260717-56260736 Msa0127040:intron 15.0%
!! TTGTTTATAATAGAAAAACA+TGG + chr1_3:56261309-56261328 Msa0127040:intron 15.0%
!! TGTTTATAATAGAAAAACAT+GGG + chr1_3:56261310-56261329 Msa0127040:intron 15.0%
!! TTTAAAAAATTTGGATGATA+TGG - chr1_3:56261580-56261599 None:intergenic 15.0%
!!! TAGATAGATCTAAAATTATA+TGG + chr1_3:56261821-56261840 Msa0127040:intron 15.0%
!! ATAATTCAATTAAAACCAAA+TGG - chr1_3:56262378-56262397 None:intergenic 15.0%
!!! ATTTGGTTTTAATTGAATTA+TGG + chr1_3:56262377-56262396 Msa0127040:intron 15.0%
!!! TCTTAATTTTATATGCAACA+AGG - chr1_3:56259192-56259211 None:intergenic 20.0%
!! TAGGTTAAGAATTTAATGTT+TGG + chr1_3:56260136-56260155 Msa0127040:intron 20.0%
!! GAATTTAATGTTTGGATTAT+TGG + chr1_3:56260144-56260163 Msa0127040:intron 20.0%
!!! TGTTGATTTAATTTTTTTGG+GGG + chr1_3:56260197-56260216 Msa0127040:intron 20.0%
!!! AATGTCGATTTTTGTTTTTT+TGG + chr1_3:56260334-56260353 Msa0127040:intron 20.0%
!!! ATGTCGATTTTTGTTTTTTT+GGG + chr1_3:56260335-56260354 Msa0127040:intron 20.0%
!!! AATGTTCTAAATTCTAATAG+GGG - chr1_3:56260457-56260476 None:intergenic 20.0%
!!! CAAATGTTCTAAATTCTAAT+AGG - chr1_3:56260459-56260478 None:intergenic 20.0%
!!! CTATTAGAATTTAGAACATT+TGG + chr1_3:56260457-56260476 Msa0127040:intron 20.0%
!! AAATTAATGAAAAGTGAAAC+AGG - chr1_3:56260613-56260632 None:intergenic 20.0%
!!! AATTTTATTTTTAGAGTGTG+TGG + chr1_3:56260628-56260647 Msa0127040:intron 20.0%
!! CTATTTAACAACACTTAATT+CGG - chr1_3:56260959-56260978 None:intergenic 20.0%
!! TATGAAAGATTATGAAATAG+CGG + chr1_3:56261055-56261074 Msa0127040:intron 20.0%
!! AAAGTTTAATAGAGACAAAA+GGG - chr1_3:56261236-56261255 None:intergenic 20.0%
!! TAAAGTTTAATAGAGACAAA+AGG - chr1_3:56261237-56261256 None:intergenic 20.0%
!!! TTTTAAGCACTTAAATTTCA+TGG + chr1_3:56261738-56261757 Msa0127040:intron 20.0%
!! TTTAAGCACTTAAATTTCAT+GGG + chr1_3:56261739-56261758 Msa0127040:intron 20.0%
!!! TAATTTTAGATCTATCTAGA+TGG - chr1_3:56261819-56261838 None:intergenic 20.0%
!!! TTTTTGAGATTTAAATGACA+TGG - chr1_3:56262065-56262084 None:intergenic 20.0%
!! TTAAATCTCAAAAACTTCAA+CGG + chr1_3:56262071-56262090 Msa0127040:intron 20.0%
! ATTCAGATCTGTTTATCATT+TGG + chr1_3:56259768-56259787 Msa0127040:intron 25.0%
!! TTATCATTTGGCTCAATTAT+TGG + chr1_3:56259780-56259799 Msa0127040:intron 25.0%
!!! TTTTTTATTTTAGATCCTGC+TGG + chr1_3:56259821-56259840 Msa0127040:intron 25.0%
!!! TTTTTATTTTAGATCCTGCT+GGG + chr1_3:56259822-56259841 Msa0127040:intron 25.0%
!! TTGCTTACAGTTTGAATTTT+AGG + chr1_3:56260117-56260136 Msa0127040:intron 25.0%
!! ATGTTCTAAATTCTAATAGG+GGG - chr1_3:56260456-56260475 None:intergenic 25.0%
!!! TGTTTTAGTAAAGTACAAGT+AGG - chr1_3:56261213-56261232 None:intergenic 25.0%
!!! TGTTTTGGTTAATAACTAGT+AGG + chr1_3:56261333-56261352 Msa0127040:intron 25.0%
!!! GCTCTTATTGTTAGTTTTAA+TGG - chr1_3:56261493-56261512 None:intergenic 25.0%
!! ATTAAGTCAGATATGTTTTC+AGG - chr1_3:56261550-56261569 None:intergenic 25.0%
!!! CCTGGGTATTTTAAAAAATT+TGG - chr1_3:56261589-56261608 None:intergenic 25.0%
!!! CCAAATTTTTTAAAATACCC+AGG + chr1_3:56261586-56261605 Msa0127040:intron 25.0%
! CCATAACATTTACAAATGAT+CGG - chr1_3:56261658-56261677 None:intergenic 25.0%
! GAGTATACTAAAATAGTTAG+AGG + chr1_3:56261761-56261780 Msa0127040:intron 25.0%
! ACTAAAATAGTTAGAGGAAT+AGG + chr1_3:56261767-56261786 Msa0127040:intron 25.0%
! CTAAAATAGTTAGAGGAATA+GGG + chr1_3:56261768-56261787 Msa0127040:intron 25.0%
! AAAATGCATTAGATATGTGA+GGG - chr1_3:56262019-56262038 None:intergenic 25.0%
! AAAAATGCATTAGATATGTG+AGG - chr1_3:56262020-56262039 None:intergenic 25.0%
!!! TGGTTTCTAAAATATGAATC+AGG + chr1_3:56262112-56262131 Msa0127040:intron 25.0%
! ACAATATTGACAGACAAATT+TGG + chr1_3:56262203-56262222 Msa0127040:CDS 25.0%
! TTAAATGAAACTGAATTGCA+TGG + chr1_3:56262290-56262309 Msa0127040:CDS 25.0%
! ATTAAAACCAAATGGAAACA+TGG - chr1_3:56262370-56262389 None:intergenic 25.0%
TACCATAGACAAAAATCTCT+CGG + chr1_3:56259293-56259312 Msa0127040:five_prime_UTR 30.0%
!! TTAACATGAATCGATTTTGC+AGG + chr1_3:56259571-56259590 Msa0127040:intron 30.0%
! ACTCAATTCTGCAATCTTTT+TGG + chr1_3:56260065-56260084 Msa0127040:intron 30.0%
TAATGTTTGGATTATTGGGA+TGG + chr1_3:56260149-56260168 Msa0127040:intron 30.0%
! GACTTTTCAGAAACATGTTA+AGG - chr1_3:56260259-56260278 None:intergenic 30.0%
TGAAAACTAAAACTGCTTGT+CGG - chr1_3:56260307-56260326 None:intergenic 30.0%
! TGTTCTAAATTCTAATAGGG+GGG - chr1_3:56260455-56260474 None:intergenic 30.0%
AAAACTAAAACTGCCTATTG+GGG - chr1_3:56260483-56260502 None:intergenic 30.0%
CAAAACTAAAACTGCCTATT+GGG - chr1_3:56260484-56260503 None:intergenic 30.0%
TCAAAACTAAAACTGCCTAT+TGG - chr1_3:56260485-56260504 None:intergenic 30.0%
! AGCTTTATATAACTAGCCAT+AGG - chr1_3:56260553-56260572 None:intergenic 30.0%
TAAGCACCTATAAAGTTGTT+TGG + chr1_3:56260572-56260591 Msa0127040:intron 30.0%
CCAATTCCAAACAACTTTAT+AGG - chr1_3:56260581-56260600 None:intergenic 30.0%
! CCTATAAAGTTGTTTGGAAT+TGG + chr1_3:56260578-56260597 Msa0127040:intron 30.0%
!!! TATTTTTAGAGTGTGTGGAA+TGG + chr1_3:56260633-56260652 Msa0127040:intron 30.0%
GGTAATTTAGAAATTGAGCA+TGG + chr1_3:56260799-56260818 Msa0127040:intron 30.0%
TCTGATATCATGTCCTTTAA+AGG + chr1_3:56260858-56260877 Msa0127040:intron 30.0%
GGAAACTAAAACACCTTTAA+AGG - chr1_3:56260874-56260893 None:intergenic 30.0%
AGGAAAACAAACTAATGCTA+GGG - chr1_3:56260895-56260914 None:intergenic 30.0%
GTTGTTAAATAGCAGTATAG+CGG + chr1_3:56260967-56260986 Msa0127040:intron 30.0%
! ATAGAAAAACATGGGTGTTT+TGG + chr1_3:56261318-56261337 Msa0127040:intron 30.0%
ATATAACCCAAATTGGACTT+CGG + chr1_3:56261452-56261471 Msa0127040:intron 30.0%
AAATTTGGATGATATGGATC+TGG - chr1_3:56261574-56261593 None:intergenic 30.0%
CCGATCATTTGTAAATGTTA+TGG + chr1_3:56261655-56261674 Msa0127040:intron 30.0%
TATGGTAAACTTCTCATAAC+TGG + chr1_3:56261673-56261692 Msa0127040:intron 30.0%
TTAGATCTATCTAGATGGTT+TGG - chr1_3:56261814-56261833 None:intergenic 30.0%
ATATGGCCTATCTGTATTTA+TGG + chr1_3:56261838-56261857 Msa0127040:intron 30.0%
TCTACATAAGCAAATCCTTT+CGG - chr1_3:56262233-56262252 None:intergenic 30.0%
ATAAAAATACCTTCAGCTGT+CGG - chr1_3:56262316-56262335 None:intergenic 30.0%
! TGAATTATGGTTTTTCCTTC+AGG + chr1_3:56262390-56262409 Msa0127040:intron 30.0%
TTGATGTTCAGCATCTATGT+CGG - chr1_3:56259456-56259475 None:intergenic 35.0%
ATAGATGCTGAACATCAAGA+AGG + chr1_3:56259458-56259477 Msa0127040:CDS 35.0%
!! TGAATCGATTTTGCAGGAAT+TGG + chr1_3:56259577-56259596 Msa0127040:intron 35.0%
AATTGGAGGATATGAAGAAG+AGG + chr1_3:56259594-56259613 Msa0127040:CDS 35.0%
TTCTGTATCTCAAGCTGAAA+AGG + chr1_3:56259847-56259866 Msa0127040:CDS 35.0%
TAGAACGTTTAGGTGTATGA+TGG + chr1_3:56260017-56260036 Msa0127040:intron 35.0%
! CAATTCTGCAATCTTTTTGG+CGG + chr1_3:56260068-56260087 Msa0127040:intron 35.0%
CAAAGATGCACCTAAAAACT+CGG - chr1_3:56260097-56260116 None:intergenic 35.0%
TTTGGATTATTGGGATGGAT+GGG + chr1_3:56260154-56260173 Msa0127040:intron 35.0%
AAAACTAAAACTGCTTGTCG+GGG - chr1_3:56260305-56260324 None:intergenic 35.0%
GAAAACTAAAACTGCTTGTC+GGG - chr1_3:56260306-56260325 None:intergenic 35.0%
!! TTTCAACTACTTGGTGCATA+TGG - chr1_3:56260399-56260418 None:intergenic 35.0%
!! GATCGTTGTTTTCAACTACT+TGG - chr1_3:56260408-56260427 None:intergenic 35.0%
ATTGATTGAACCAAAAACCC+TGG + chr1_3:56260516-56260535 Msa0127040:intron 35.0%
! AAAAGTGAAACAGGCTGTTT+TGG - chr1_3:56260604-56260623 None:intergenic 35.0%
!!! ATTGAGCATGGTTTTGTCAA+AGG + chr1_3:56260811-56260830 Msa0127040:intron 35.0%
GAGGAAAACAAACTAATGCT+AGG - chr1_3:56260896-56260915 None:intergenic 35.0%
!!! GCATTAGTTTGTTTTCCTCT+TGG + chr1_3:56260897-56260916 Msa0127040:intron 35.0%
!!! TAGTTTGTTTTCCTCTTGGA+AGG + chr1_3:56260901-56260920 Msa0127040:intron 35.0%
!! AGTTTGTTTTCCTCTTGGAA+GGG + chr1_3:56260902-56260921 Msa0127040:intron 35.0%
TTACAGATCGCAGAATATAG+CGG - chr1_3:56261121-56261140 None:intergenic 35.0%
! ACTTGCACCTTAGTGTTTTT+AGG - chr1_3:56261178-56261197 None:intergenic 35.0%
! AACTTGCACCTTAGTGTTTT+AGG + chr1_3:56261367-56261386 Msa0127040:intron 35.0%
CACACACATATAACCCAAAT+TGG + chr1_3:56261445-56261464 Msa0127040:intron 35.0%
TTGAAACCGAAGTCCAATTT+GGG - chr1_3:56261461-56261480 None:intergenic 35.0%
ATTGAAACCGAAGTCCAATT+TGG - chr1_3:56261462-56261481 None:intergenic 35.0%
ATTGGACTTCGGTTTCAATT+TGG + chr1_3:56261463-56261482 Msa0127040:intron 35.0%
ATAAGAGCTACTAGACCATT+TGG + chr1_3:56261505-56261524 Msa0127040:intron 35.0%
CATTCAGGTAATCAACCAAA+TGG - chr1_3:56261523-56261542 None:intergenic 35.0%
!! ATGTTTTCAGGATCACATTC+AGG - chr1_3:56261538-56261557 None:intergenic 35.0%
TGGTTTCTTACAAGTTACCT+GGG - chr1_3:56261606-56261625 None:intergenic 35.0%
TTGGTTTCTTACAAGTTACC+TGG - chr1_3:56261607-56261626 None:intergenic 35.0%
! GTTTGGCCTAAAGTTTTCTT+TGG - chr1_3:56261797-56261816 None:intergenic 35.0%
CATGGACCATAAATACAGAT+AGG - chr1_3:56261847-56261866 None:intergenic 35.0%
CTATCTGTATTTATGGTCCA+TGG + chr1_3:56261845-56261864 Msa0127040:intron 35.0%
! TGTGTGTTCAAGATTGATTC+TGG + chr1_3:56261986-56262005 Msa0127040:intron 35.0%
! GGAGTGTTAATTCATCAAAC+TGG + chr1_3:56262092-56262111 Msa0127040:intron 35.0%
AATCACTCCATGTTTCCATT+TGG + chr1_3:56262360-56262379 Msa0127040:intron 35.0%
! TAAGCATATGGTGGAAAGAA+TGG - chr1_3:56262505-56262524 None:intergenic 35.0%
TTCTTTCCACCATATGCTTA+CGG + chr1_3:56262505-56262524 Msa0127040:CDS 35.0%
! CACCGAGAGATTTTTGTCTA+TGG - chr1_3:56259298-56259317 None:intergenic 40.0%
TAGACAAAAATCTCTCGGTG+CGG + chr1_3:56259298-56259317 Msa0127040:five_prime_UTR 40.0%
ATCCATGTCAACCTCTTCAT+CGG - chr1_3:56259432-56259451 None:intergenic 40.0%
AGGGTTAGGGTTAACGAATT+AGG + chr1_3:56259518-56259537 Msa0127040:intron 40.0%
GGGTTAGGGTTAACGAATTA+GGG + chr1_3:56259519-56259538 Msa0127040:intron 40.0%
AGGGTTAACGAATTAGGGTT+TGG + chr1_3:56259524-56259543 Msa0127040:intron 40.0%
GGGTTAACGAATTAGGGTTT+GGG + chr1_3:56259525-56259544 Msa0127040:intron 40.0%
!! ATCGATTTTGCAGGAATTGG+AGG + chr1_3:56259580-56259599 Msa0127040:intron 40.0%
AGCTAAGGTTGAGAAAGAGA+TGG + chr1_3:56259661-56259680 Msa0127040:CDS 40.0%
GCTAAGGTTGAGAAAGAGAT+GGG + chr1_3:56259662-56259681 Msa0127040:CDS 40.0%
TGTATCTCAAGCTGAAAAGG+AGG + chr1_3:56259850-56259869 Msa0127040:CDS 40.0%
AGTGCTCAAGTAGAACGTTT+AGG + chr1_3:56260007-56260026 Msa0127040:intron 40.0%
GTTTGGATTATTGGGATGGA+TGG + chr1_3:56260153-56260172 Msa0127040:intron 40.0%
!! GGGCTGAATGTTCTAGAAAA+GGG - chr1_3:56260285-56260304 None:intergenic 40.0%
CTGCACGTGATTGACTAATA+CGG + chr1_3:56260372-56260391 Msa0127040:intron 40.0%
TGCACGTGATTGACTAATAC+GGG + chr1_3:56260373-56260392 Msa0127040:intron 40.0%
TTAGAACATTTGGCCCCAAT+AGG + chr1_3:56260467-56260486 Msa0127040:intron 40.0%
TTGAACCAAAAACCCTGGTA+TGG + chr1_3:56260521-56260540 Msa0127040:intron 40.0%
TTGGAAGGGACATGTTATCA+GGG + chr1_3:56260916-56260935 Msa0127040:intron 40.0%
GCTATATCACTATCGCATAG+CGG + chr1_3:56260991-56261010 Msa0127040:intron 40.0%
!!! GCACCTTAGTGTTTTTAGGT+GGG - chr1_3:56261174-56261193 None:intergenic 40.0%
!!! TGCACCTTAGTGTTTTTAGG+TGG - chr1_3:56261175-56261194 None:intergenic 40.0%
!! TTGCACCTTAGTGTTTTAGG+TGG + chr1_3:56261370-56261389 Msa0127040:intron 40.0%
!! TGCACCTTAGTGTTTTAGGT+GGG + chr1_3:56261371-56261390 Msa0127040:intron 40.0%
AAGCATTACCATGCAGTACA+GGG - chr1_3:56261720-56261739 None:intergenic 40.0%
! AAAGCATTACCATGCAGTAC+AGG - chr1_3:56261721-56261740 None:intergenic 40.0%
GGGAGACCAAAGAAAACTTT+AGG + chr1_3:56261788-56261807 Msa0127040:intron 40.0%
TTATGGTCCATGGCAGAATA+TGG + chr1_3:56261855-56261874 Msa0127040:intron 40.0%
! TGTCGTTTGATCCATGTAGT+CGG + chr1_3:56261878-56261897 Msa0127040:intron 40.0%
!! TACCAAAGCTTTTTCCCACA+AGG - chr1_3:56261909-56261928 None:intergenic 40.0%
AAATGCTGTTGGACTTCTTC+AGG - chr1_3:56262155-56262174 None:intergenic 40.0%
GACAAATTTGGTCAACCGAA+AGG + chr1_3:56262215-56262234 Msa0127040:CDS 40.0%
GCAAAACGTACAAATGTTCC+TGG + chr1_3:56262418-56262437 Msa0127040:CDS 40.0%
TCTTTCCACCATATGCTTAC+GGG + chr1_3:56262506-56262525 Msa0127040:CDS 40.0%
GAACGACAAGGAGAAGAAGA+AGG + chr1_3:56259337-56259356 Msa0127040:five_prime_UTR 45.0%
AGACGATAGAGTAGCGAAGA+TGG + chr1_3:56259370-56259389 Msa0127040:exon 45.0%
! CAGGAAGAGCACGAAGTTTA+TGG + chr1_3:56259395-56259414 Msa0127040:CDS 45.0%
TCCATGTCAACCTCTTCATC+GGG - chr1_3:56259431-56259450 None:intergenic 45.0%
CAATCACACCACCAAGGTTA+GGG + chr1_3:56259499-56259518 Msa0127040:intron 45.0%
GTTAACCCTAACCCTAACCT+TGG - chr1_3:56259513-56259532 None:intergenic 45.0%
TCTTCGCGAAATGCAAGCTA+AGG + chr1_3:56259646-56259665 Msa0127040:CDS 45.0%
TCAAGCTGAAAAGGAGGAAG+TGG + chr1_3:56259856-56259875 Msa0127040:CDS 45.0%
GATGCTCGATCGATCTATGT+TGG + chr1_3:56259878-56259897 Msa0127040:CDS 45.0%
! TTGGCGGTTTCCGAGTTTTT+AGG + chr1_3:56260084-56260103 Msa0127040:intron 45.0%
!! GGGGCTGAATGTTCTAGAAA+AGG - chr1_3:56260286-56260305 None:intergenic 45.0%
ACCAAAAACCCTGGTATGGT+AGG + chr1_3:56260525-56260544 Msa0127040:intron 45.0%
! ACCTACCATACCAGGGTTTT+TGG - chr1_3:56260529-56260548 None:intergenic 45.0%
CATAGGTACCTACCATACCA+GGG - chr1_3:56260536-56260555 None:intergenic 45.0%
AGTGTGTGGAATGGTTGAGA+TGG + chr1_3:56260642-56260661 Msa0127040:intron 45.0%
GTGTGTGGAATGGTTGAGAT+GGG + chr1_3:56260643-56260662 Msa0127040:intron 45.0%
GAATGGTTGAGATGGGAAAG+AGG + chr1_3:56260650-56260669 Msa0127040:intron 45.0%
GAGATGGGAAAGAGGTTGTA+TGG + chr1_3:56260658-56260677 Msa0127040:intron 45.0%
GTGTTGTACATGTAGCCAGT+TGG + chr1_3:56260756-56260775 Msa0127040:intron 45.0%
GTACATGTAGCCAGTTGGTT+TGG + chr1_3:56260761-56260780 Msa0127040:intron 45.0%
!! TGTAGCCAGTTGGTTTGGTT+TGG + chr1_3:56260766-56260785 Msa0127040:intron 45.0%
GATAACATGTCCCTTCCAAG+AGG - chr1_3:56260915-56260934 None:intergenic 45.0%
CTTGGAAGGGACATGTTATC+AGG + chr1_3:56260915-56260934 Msa0127040:intron 45.0%
GCTGTGCTATAGCATTGTTG+CGG + chr1_3:56261083-56261102 Msa0127040:intron 45.0%
GGTGGGTGCAAGTTAACAAA+TGG - chr1_3:56261157-56261176 None:intergenic 45.0%
GCACCCACCTAAAAACACTA+AGG + chr1_3:56261168-56261187 Msa0127040:intron 45.0%
TGCACCCACCTAAAACACTA+AGG - chr1_3:56261378-56261397 None:intergenic 45.0%
AACGACACCATATTCTGCCA+TGG - chr1_3:56261865-56261884 None:intergenic 45.0%
!! CAAAGCTTTTTCCCACAAGG+TGG - chr1_3:56261906-56261925 None:intergenic 45.0%
CACCTTGTGGGAAAAAGCTT+TGG + chr1_3:56261904-56261923 Msa0127040:intron 45.0%
CACAGGACTGAAAATGCTGT+TGG - chr1_3:56262166-56262185 None:intergenic 45.0%
! CAACAGCATTTTCAGTCCTG+TGG + chr1_3:56262164-56262183 Msa0127040:CDS 45.0%
! TACGTTTTGCAGACACCTGA+AGG - chr1_3:56262408-56262427 None:intergenic 45.0%
GTTCCTGGATTGAAGCAGTA+CGG + chr1_3:56262433-56262452 Msa0127040:CDS 45.0%
AAGAATGGTGCAGGCATGAA+AGG - chr1_3:56262490-56262509 None:intergenic 45.0%
! TATGGTGGAAAGAATGGTGC+AGG - chr1_3:56262499-56262518 None:intergenic 45.0%
!! AATTAAAAGAATAATATAAA+AGG + chr1_3:56259249-56259268 Msa0127040:intron 5.0%
!! ATTAAAAGAATAATATAAAA+GGG + chr1_3:56259250-56259269 Msa0127040:intron 5.0%
!!! TAAACTTTATTTTAATTAAA+AGG + chr1_3:56261248-56261267 Msa0127040:intron 5.0%
GAGAGAGTGAGAGAACGACA+AGG + chr1_3:56259325-56259344 Msa0127040:five_prime_UTR 50.0%
TAGAGTAGCGAAGATGGAGC+AGG + chr1_3:56259376-56259395 Msa0127040:exon 50.0%
TGCTGACATTCCCGATGAAG+AGG + chr1_3:56259418-56259437 Msa0127040:CDS 50.0%
TCCCGATGAAGAGGTTGACA+TGG + chr1_3:56259427-56259446 Msa0127040:CDS 50.0%
!! CCTAACCTTGGTGGTGTGAT+TGG - chr1_3:56259501-56259520 None:intergenic 50.0%
CCAATCACACCACCAAGGTT+AGG + chr1_3:56259498-56259517 Msa0127040:intron 50.0%
ACACCACCAAGGTTAGGGTT+AGG + chr1_3:56259504-56259523 Msa0127040:intron 50.0%
CACCACCAAGGTTAGGGTTA+GGG + chr1_3:56259505-56259524 Msa0127040:intron 50.0%
AACCCTAACCCTAACCTTGG+TGG - chr1_3:56259510-56259529 None:intergenic 50.0%
GAAGAGGCTGAAAGAGATCG+AGG + chr1_3:56259610-56259629 Msa0127040:CDS 50.0%
! AAAGAGATGGGCGCTGTTCA+AGG + chr1_3:56259674-56259693 Msa0127040:CDS 50.0%
TGAGATACAGAAGACCCAGC+AGG - chr1_3:56259839-56259858 None:intergenic 50.0%
CCATAGGTACCTACCATACC+AGG - chr1_3:56260537-56260556 None:intergenic 50.0%
CCTGGTATGGTAGGTACCTA+TGG + chr1_3:56260534-56260553 Msa0127040:intron 50.0%
TCGCTCCAAACCAAACCAAC+TGG - chr1_3:56260774-56260793 None:intergenic 50.0%
!! GTTTGGTTTGGAGCGAGTCT+GGG + chr1_3:56260778-56260797 Msa0127040:intron 50.0%
TGTGTGTGTGTGTGTGTGTG+GGG - chr1_3:56261425-56261444 None:intergenic 50.0%
GTGTGTGTGTGTGTGTGTGT+GGG - chr1_3:56261426-56261445 None:intergenic 50.0%
TGTGTGTGTGTGTGTGTGTG+TGG - chr1_3:56261425-56261444 None:intergenic 50.0%
ATGCAGTACAGGGCTGATGA+AGG - chr1_3:56261710-56261729 None:intergenic 50.0%
TTCATCAGCCCTGTACTGCA+TGG + chr1_3:56261709-56261728 Msa0127040:intron 50.0%
ACAAGGTGGAACCGACTACA+TGG - chr1_3:56261892-56261911 None:intergenic 50.0%
! ATGTAGTCGGTTCCACCTTG+TGG + chr1_3:56261891-56261910 Msa0127040:intron 50.0%
! TGTAGTCGGTTCCACCTTGT+GGG + chr1_3:56261892-56261911 Msa0127040:intron 50.0%
GACTCTGTTCACAGTACCAC+AGG - chr1_3:56262183-56262202 None:intergenic 50.0%
CTTCCGTACTGCTTCAATCC+AGG - chr1_3:56262439-56262458 None:intergenic 50.0%
CGCATCCAATCACACCACCA+AGG + chr1_3:56259493-56259512 Msa0127040:CDS 55.0%
!! GGTTTGGTTTGGAGCGAGTC+TGG + chr1_3:56260777-56260796 Msa0127040:intron 55.0%
TGTGTGTGTGTGTGTGTGGG+GGG - chr1_3:56261423-56261442 None:intergenic 55.0%
GTGTGTGTGTGTGTGTGTGG+GGG - chr1_3:56261424-56261443 None:intergenic 55.0%
ATTGCATGGCCGACAGCTGA+AGG + chr1_3:56262304-56262323 Msa0127040:CDS 55.0%
CAGTACGGAAGAAGACCTGC+TGG + chr1_3:56262448-56262467 Msa0127040:CDS 55.0%
!! AGAAGACCTGCTGGTTTCCG+CGG + chr1_3:56262457-56262476 Msa0127040:CDS 55.0%
TGTGTGTGTGTGTGTGGGGG+GGG - chr1_3:56261421-56261440 None:intergenic 60.0%
GTGTGTGTGTGTGTGTGGGG+GGG - chr1_3:56261422-56261441 None:intergenic 60.0%
GCATGAAAGGCCTCCTACCG+CGG - chr1_3:56262477-56262496 None:intergenic 60.0%
TGTGTGTGTGTGTGGGGGGG+GGG - chr1_3:56261419-56261438 None:intergenic 65.0%
GTGTGTGTGTGTGTGGGGGG+GGG - chr1_3:56261420-56261439 None:intergenic 65.0%
!! GACCTGCTGGTTTCCGCGGT+AGG + chr1_3:56262461-56262480 Msa0127040:CDS 65.0%
CTCCTACCGCGGAAACCAGC+AGG - chr1_3:56262466-56262485 None:intergenic 65.0%
!! CTGCTGGTTTCCGCGGTAGG+AGG + chr1_3:56262464-56262483 Msa0127040:CDS 65.0%
TGTGTGTGTGTGGGGGGGGG+GGG - chr1_3:56261417-56261436 None:intergenic 70.0%
GTGTGTGTGTGTGGGGGGGG+GGG - chr1_3:56261418-56261437 None:intergenic 70.0%
TGTGTGTGTGGGGGGGGGGG+GGG - chr1_3:56261415-56261434 None:intergenic 75.0%
GTGTGTGTGTGGGGGGGGGG+GGG - chr1_3:56261416-56261435 None:intergenic 75.0%
! TGTGTGTGGGGGGGGGGGGG+GGG - chr1_3:56261413-56261432 None:intergenic 80.0%
! GTGTGTGTGGGGGGGGGGGG+GGG - chr1_3:56261414-56261433 None:intergenic 80.0%
! TGTGTGGGGGGGGGGGGGGG+GGG - chr1_3:56261411-56261430 None:intergenic 85.0%
! GTGTGTGGGGGGGGGGGGGG+GGG - chr1_3:56261412-56261431 None:intergenic 85.0%
! GTGTGGGGGGGGGGGGGGGG+GGG - chr1_3:56261410-56261429 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 56259155 56262531 56259155 ID=Msa0127040;Name=Msa0127040
chr1_3 mRNA 56259155 56262531 56259155 ID=Msa0127040-mRNA-1;Parent=Msa0127040;Name=Msa0127040-mRNA-1;_AED=0.24;_eAED=0.24;_QI=207|1|0.83|1|0.8|0.66|6|0|203
chr1_3 exon 56259155 56259223 56259155 ID=Msa0127040-mRNA-1:exon:17663;Parent=Msa0127040-mRNA-1
chr1_3 exon 56259251 56259514 56259251 ID=Msa0127040-mRNA-1:exon:17664;Parent=Msa0127040-mRNA-1
chr1_3 exon 56259593 56259695 56259593 ID=Msa0127040-mRNA-1:exon:17665;Parent=Msa0127040-mRNA-1
chr1_3 exon 56259834 56259904 56259834 ID=Msa0127040-mRNA-1:exon:17666;Parent=Msa0127040-mRNA-1
chr1_3 exon 56262134 56262325 56262134 ID=Msa0127040-mRNA-1:exon:17667;Parent=Msa0127040-mRNA-1
chr1_3 exon 56262412 56262531 56262412 ID=Msa0127040-mRNA-1:exon:17668;Parent=Msa0127040-mRNA-1
chr1_3 five_prime_UTR 56259155 56259223 56259155 ID=Msa0127040-mRNA-1:five_prime_utr;Parent=Msa0127040-mRNA-1
chr1_3 five_prime_UTR 56259251 56259388 56259251 ID=Msa0127040-mRNA-1:five_prime_utr;Parent=Msa0127040-mRNA-1
chr1_3 CDS 56259389 56259514 56259389 ID=Msa0127040-mRNA-1:cds;Parent=Msa0127040-mRNA-1
chr1_3 CDS 56259593 56259695 56259593 ID=Msa0127040-mRNA-1:cds;Parent=Msa0127040-mRNA-1
chr1_3 CDS 56259834 56259904 56259834 ID=Msa0127040-mRNA-1:cds;Parent=Msa0127040-mRNA-1
chr1_3 CDS 56262134 56262325 56262134 ID=Msa0127040-mRNA-1:cds;Parent=Msa0127040-mRNA-1
chr1_3 CDS 56262412 56262531 56262412 ID=Msa0127040-mRNA-1:cds;Parent=Msa0127040-mRNA-1
Gene Sequence

>Msa0127040

ATGGAGCAGGAAGAGCACGAAGTTTATGGTGCTGACATTCCCGATGAAGAGGTTGACATGGATGCCGACATAGATGCTGAACATCAAGAAGGCGATGAAGAACTCGCATCCAATCACACCACCAAGGAATTGGAGGATATGAAGAAGAGGCTGAAAGAGATCGAGGAAGAAGCTAGTGCTCTTCGCGAAATGCAAGCTAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGATCCTGCTGGGTCTTCTGTATCTCAAGCTGAAAAGGAGGAAGTGGATGCTCGATCGATCTATGTTGGTAATGTTGACTATGCATGCACACCTGAAGAAGTCCAACAGCATTTTCAGTCCTGTGGTACTGTGAACAGAGTCACAATATTGACAGACAAATTTGGTCAACCGAAAGGATTTGCTTATGTAGAATTTGTTGAAGCTGATGCTGTTCAGAATGCTCTCATTTTAAATGAAACTGAATTGCATGGCCGACAGCTGAAGGTGTCTGCAAAACGTACAAATGTTCCTGGATTGAAGCAGTACGGAAGAAGACCTGCTGGTTTCCGCGGTAGGAGGCCTTTCATGCCTGCACCATTCTTTCCACCATATGCTTACGGGTAA

Protein sequence

>Msa0127040

MEQEEHEVYGADIPDEEVDMDADIDAEHQEGDEELASNHTTKELEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDPAGSSVSQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEADAVQNALILNETELHGRQLKVSAKRTNVPGLKQYGRRPAGFRGRRPFMPAPFFPPYAYG*