AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1450280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1450280 MtrunA17_Chr3g0137181 100.000 51 0 0 37 87 1 51 1.01e-32 107
Msa1450280 MtrunA17_Chr1g0149761 100.000 51 0 0 37 87 1 51 1.01e-32 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1450280 AT4G31985.1 90.196 51 5 0 37 87 1 51 1.53e-29 100
Msa1450280 AT3G02190.1 88.235 51 6 0 37 87 1 51 4.03e-28 96.3
Msa1450280 AT2G25210.1 90.909 44 4 0 44 87 1 44 5.79e-24 85.9

Find 43 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTATTGTAGTTAATTAA+AGG 0.251556 tig0032856:-10433 Msa1450280:three_prime_UTR
ATTTAAGACAATCGATGTTT+TGG 0.282559 tig0032856:-10512 Msa1450280:three_prime_UTR
TGGTGTGGATTCTTTGATTA+TGG 0.302177 tig0032856:-11654 Msa1450280:intron
ATAGGCTATCCATTGTGATA+TGG 0.302613 tig0032856:-10316 Msa1450280:three_prime_UTR
GTGCAGCCGTCGAGCATTTC+CGG 0.303652 tig0032856:-10954 Msa1450280:CDS
TTAGATTAGGGCTTCGTGTT+AGG 0.305458 tig0032856:-10997 Msa1450280:intron
GCGATTTGAGTTCATTCTAT+AGG 0.319316 tig0032856:-10334 Msa1450280:three_prime_UTR
ATTCGTAATCAAGAAGAAAT+TGG 0.321220 tig0032856:-10812 Msa1450280:CDS
AATGGCATACATCACCAATA+AGG 0.381130 tig0032856:+10200 None:intergenic
CCGGAGGCAAGGATCGAAAA+TGG 0.389081 tig0032856:-10935 Msa1450280:intron
TTATTTCATCAAGGGAAATA+CGG 0.394107 tig0032856:-10289 Msa1450280:three_prime_UTR
TAGGCTATCCATTGTGATAT+GGG 0.411931 tig0032856:-10315 Msa1450280:three_prime_UTR
TCAAGCGAGTGCAATCAAAA+TGG 0.413755 tig0032856:+10182 None:intergenic
AGAATAGACCCATCCCTTAC+TGG 0.418157 tig0032856:-10774 Msa1450280:CDS
GGCATTGTAATATTATACTT+TGG 0.421444 tig0032856:-10491 Msa1450280:three_prime_UTR
TAGATTAGGGCTTCGTGTTA+GGG 0.422723 tig0032856:-10996 Msa1450280:intron
GGGTTTACAAGAAGCATTCT+CGG 0.431321 tig0032856:-10976 Msa1450280:CDS
CTTGAAATGTTGGCTGCTAA+TGG 0.439934 tig0032856:-11674 None:intergenic
TCCCTTACTGGATCCGTATG+AGG 0.452674 tig0032856:-10762 Msa1450280:CDS
CACTGGCGCCGTACCAAGCT+CGG 0.478359 tig0032856:-10606 Msa1450280:CDS
AACCCTAATAGTTCAAGAAA+AGG 0.479806 tig0032856:+10552 None:intergenic
TATTTCATCAAGGGAAATAC+GGG 0.488022 tig0032856:-10288 Msa1450280:three_prime_UTR
ACAATGCTAAGCGCCGTCAC+TGG 0.497185 tig0032856:-10623 Msa1450280:CDS
CTCAAAATCCGAGCTTGGTA+CGG 0.513650 tig0032856:+10598 None:intergenic
GCTTGGTACGGCGCCAGTGA+CGG 0.518206 tig0032856:+10610 None:intergenic
TGAGGACTGACAACACCATC+AGG 0.522876 tig0032856:-10744 Msa1450280:intron
GTCCTCATACGGATCCAGTA+AGG 0.528387 tig0032856:+10760 None:intergenic
GGACAAAACGCGGCAAAGCA+AGG 0.533748 tig0032856:+10573 None:intergenic
TATTGTAGTTAATTAAAGGT+TGG 0.534281 tig0032856:-10429 Msa1450280:three_prime_UTR
GTCGAGCATTTCCGGAGGCA+AGG 0.547294 tig0032856:-10946 Msa1450280:CDS
TGGTGTTGTCAGTCCTCATA+CGG 0.570137 tig0032856:+10749 None:intergenic
AGGACCTCAAAATCCGAGCT+TGG 0.583429 tig0032856:+10593 None:intergenic
ATACGGATCCAGTAAGGGAT+GGG 0.586639 tig0032856:+10766 None:intergenic
ACAATTTCCTAGTATACAGT+AGG 0.587677 tig0032856:+10256 None:intergenic
CATACGGATCCAGTAAGGGA+TGG 0.594687 tig0032856:+10765 None:intergenic
AGAAATTGGCGAAGAAGATG+AGG 0.597939 tig0032856:-10798 Msa1450280:CDS
ATTACGAATGTCTTGTGTGA+CGG 0.598814 tig0032856:+10826 None:intergenic
TCCTCATACGGATCCAGTAA+GGG 0.602358 tig0032856:+10761 None:intergenic
AATAAAATCCCATATCACAA+TGG 0.626436 tig0032856:+10307 None:intergenic
AATGTTGGCTGCTAATGGTG+TGG 0.637642 tig0032856:-11669 Msa1450280:CDS
TTGCCTCCGGAAATGCTCGA+CGG 0.662148 tig0032856:+10948 None:intergenic
TTCAAGAAAAGGACAAAACG+CGG 0.690502 tig0032856:+10563 None:intergenic
CAGCCGTCGAGCATTTCCGG+AGG 0.690561 tig0032856:-10951 Msa1450280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAATATTTTTAATTTATTTC+TGG - tig0032856:10679-10698 Msa1450280:intron 10.0%
!!! GAATATTTTTAATTTATTTC+TGG - tig0032856:10679-10698 Msa1450280:intron 10.0%
!!! TTTTCTAGAATTTTTTTTTG+TGG - tig0032856:10239-10258 Msa1450280:three_prime_UTR 15.0%
!!! TTTTTATTTTTTCCTCTTTT+AGG - tig0032856:11174-11193 Msa1450280:intron 15.0%
!! AACTTATTGTAGTTAATTAA+AGG - tig0032856:11388-11407 Msa1450280:intron 15.0%
!! AAATCCGAATTAATTAAAAA+AGG + tig0032856:11420-11439 None:intergenic 15.0%
!!! TTTTCTAGAATTTTTTTTTG+TGG - tig0032856:10239-10258 Msa1450280:three_prime_UTR 15.0%
!!! TTTTTATTTTTTCCTCTTTT+AGG - tig0032856:11174-11193 Msa1450280:intron 15.0%
!! AACTTATTGTAGTTAATTAA+AGG - tig0032856:11388-11407 Msa1450280:intron 15.0%
!! AAATCCGAATTAATTAAAAA+AGG + tig0032856:11420-11439 None:intergenic 15.0%
!! AAAAAAATGAAACAAGACAA+AGG + tig0032856:10333-10352 None:intergenic 20.0%
!! TCTTGTTGAACAAAAAAATA+CGG - tig0032856:10364-10383 Msa1450280:three_prime_UTR 20.0%
!! TTTGGATTGAGAATAAATTA+GGG + tig0032856:10391-10410 None:intergenic 20.0%
!!! CATTCAAAACTAAAATTTTG+AGG - tig0032856:10626-10645 Msa1450280:CDS 20.0%
!! AAAAGTTGTTATAGACAAAA+AGG - tig0032856:10653-10672 Msa1450280:intron 20.0%
!! AAAGTTGTTATAGACAAAAA+GGG - tig0032856:10654-10673 Msa1450280:intron 20.0%
!!! TTTATTTCTGGAAAAATTTG+TGG - tig0032856:10691-10710 Msa1450280:intron 20.0%
!!! AAAGATTCTGAAATTAGATT+AGG - tig0032856:10811-10830 Msa1450280:CDS 20.0%
!!! AAGATTCTGAAATTAGATTA+GGG - tig0032856:10812-10831 Msa1450280:CDS 20.0%
!! TATTGTAGTTAATTAAAGGT+TGG - tig0032856:11392-11411 Msa1450280:intron 20.0%
!!! TAGGTTTTATATGTTTTTGT+TGG - tig0032856:11596-11615 Msa1450280:intron 20.0%
!! AAAAAAATGAAACAAGACAA+AGG + tig0032856:10333-10352 None:intergenic 20.0%
!! TCTTGTTGAACAAAAAAATA+CGG - tig0032856:10364-10383 Msa1450280:three_prime_UTR 20.0%
!! TTTGGATTGAGAATAAATTA+GGG + tig0032856:10391-10410 None:intergenic 20.0%
!!! CATTCAAAACTAAAATTTTG+AGG - tig0032856:10626-10645 Msa1450280:CDS 20.0%
!! AAAAGTTGTTATAGACAAAA+AGG - tig0032856:10653-10672 Msa1450280:intron 20.0%
!! AAAGTTGTTATAGACAAAAA+GGG - tig0032856:10654-10673 Msa1450280:intron 20.0%
!!! TTTATTTCTGGAAAAATTTG+TGG - tig0032856:10691-10710 Msa1450280:intron 20.0%
!!! AAAGATTCTGAAATTAGATT+AGG - tig0032856:10811-10830 Msa1450280:CDS 20.0%
!!! AAGATTCTGAAATTAGATTA+GGG - tig0032856:10812-10831 Msa1450280:CDS 20.0%
!! TATTGTAGTTAATTAAAGGT+TGG - tig0032856:11392-11411 Msa1450280:intron 20.0%
!!! TAGGTTTTATATGTTTTTGT+TGG - tig0032856:11596-11615 Msa1450280:intron 20.0%
! GTTTGGATTGAGAATAAATT+AGG + tig0032856:10392-10411 None:intergenic 25.0%
!!! TGACTATTTTTAACGAAGTT+TGG + tig0032856:10409-10428 None:intergenic 25.0%
! CTATGTTGATGTATTCTAAT+TGG + tig0032856:10436-10455 None:intergenic 25.0%
! AATACATCAACATAGTCTAT+TGG - tig0032856:10441-10460 Msa1450280:three_prime_UTR 25.0%
!! TTCCGAGTAAATGATTTTTA+TGG - tig0032856:10592-10611 Msa1450280:exon 25.0%
!! TCCGAGTAAATGATTTTTAT+GGG - tig0032856:10593-10612 Msa1450280:exon 25.0%
! ACCCATAAAAATCATTTACT+CGG + tig0032856:10597-10616 None:intergenic 25.0%
! AGAATAAATAAGCGGTTATT+GGG - tig0032856:10744-10763 Msa1450280:intron 25.0%
! ATTCGTAATCAAGAAGAAAT+TGG - tig0032856:11009-11028 Msa1450280:intron 25.0%
!!! ATTTAAGACAATCGATGTTT+TGG - tig0032856:11309-11328 Msa1450280:intron 25.0%
! GGCATTGTAATATTATACTT+TGG - tig0032856:11330-11349 Msa1450280:intron 25.0%
!!! GGCACCTTTTTTAATTAATT+CGG - tig0032856:11413-11432 Msa1450280:intron 25.0%
! AATAAAATCCCATATCACAA+TGG + tig0032856:11517-11536 None:intergenic 25.0%
!!! TATGGGATTTTATTTCATCA+AGG - tig0032856:11523-11542 Msa1450280:intron 25.0%
!!! ATGGGATTTTATTTCATCAA+GGG - tig0032856:11524-11543 Msa1450280:intron 25.0%
! TTATTTCATCAAGGGAAATA+CGG - tig0032856:11532-11551 Msa1450280:intron 25.0%
! CAAAAACATATAAAACCTAG+AGG + tig0032856:11595-11614 None:intergenic 25.0%
! GTTTGGATTGAGAATAAATT+AGG + tig0032856:10392-10411 None:intergenic 25.0%
!!! TGACTATTTTTAACGAAGTT+TGG + tig0032856:10409-10428 None:intergenic 25.0%
! CTATGTTGATGTATTCTAAT+TGG + tig0032856:10436-10455 None:intergenic 25.0%
! AATACATCAACATAGTCTAT+TGG - tig0032856:10441-10460 Msa1450280:three_prime_UTR 25.0%
!! TTCCGAGTAAATGATTTTTA+TGG - tig0032856:10592-10611 Msa1450280:exon 25.0%
!! TCCGAGTAAATGATTTTTAT+GGG - tig0032856:10593-10612 Msa1450280:exon 25.0%
! ACCCATAAAAATCATTTACT+CGG + tig0032856:10597-10616 None:intergenic 25.0%
! AGAATAAATAAGCGGTTATT+GGG - tig0032856:10744-10763 Msa1450280:intron 25.0%
! ATTCGTAATCAAGAAGAAAT+TGG - tig0032856:11009-11028 Msa1450280:intron 25.0%
!!! ATTTAAGACAATCGATGTTT+TGG - tig0032856:11309-11328 Msa1450280:intron 25.0%
! GGCATTGTAATATTATACTT+TGG - tig0032856:11330-11349 Msa1450280:intron 25.0%
!!! GGCACCTTTTTTAATTAATT+CGG - tig0032856:11413-11432 Msa1450280:intron 25.0%
! AATAAAATCCCATATCACAA+TGG + tig0032856:11517-11536 None:intergenic 25.0%
!!! TATGGGATTTTATTTCATCA+AGG - tig0032856:11523-11542 Msa1450280:intron 25.0%
!!! ATGGGATTTTATTTCATCAA+GGG - tig0032856:11524-11543 Msa1450280:intron 25.0%
! TTATTTCATCAAGGGAAATA+CGG - tig0032856:11532-11551 Msa1450280:intron 25.0%
! CAAAAACATATAAAACCTAG+AGG + tig0032856:11595-11614 None:intergenic 25.0%
!!! GAATTTTTTTTTGTGGTGTC+CGG - tig0032856:10246-10265 Msa1450280:three_prime_UTR 30.0%
!!! AATTTTTTTTTGTGGTGTCC+GGG - tig0032856:10247-10266 Msa1450280:three_prime_UTR 30.0%
TGCATAATATATGCAAGATC+CGG + tig0032856:10282-10301 None:intergenic 30.0%
! TTTCTGGAAAAATTTGTGGT+AGG - tig0032856:10695-10714 Msa1450280:intron 30.0%
TGTGGTAGGAATATAGTTTA+AGG - tig0032856:10709-10728 Msa1450280:intron 30.0%
GTGGTAGGAATATAGTTTAA+GGG - tig0032856:10710-10729 Msa1450280:intron 30.0%
TGGTAGGAATATAGTTTAAG+GGG - tig0032856:10711-10730 Msa1450280:intron 30.0%
TATGAGGGAGAATAAATAAG+CGG - tig0032856:10736-10755 Msa1450280:intron 30.0%
GAGAATAAATAAGCGGTTAT+TGG - tig0032856:10743-10762 Msa1450280:intron 30.0%
! TTTTTCTTTGTGGGCTTTTA+CGG + tig0032856:10776-10795 None:intergenic 30.0%
! ACCACTATCTTTTTCTTTGT+GGG + tig0032856:10785-10804 None:intergenic 30.0%
! TGTCCTTTTCTTGAACTATT+AGG - tig0032856:11266-11285 Msa1450280:intron 30.0%
! GTCCTTTTCTTGAACTATTA+GGG - tig0032856:11267-11286 Msa1450280:intron 30.0%
AACCCTAATAGTTCAAGAAA+AGG + tig0032856:11272-11291 None:intergenic 30.0%
TATTTCATCAAGGGAAATAC+GGG - tig0032856:11533-11552 Msa1450280:intron 30.0%
! TTTTGTTCCTACTGTATACT+AGG - tig0032856:11558-11577 Msa1450280:intron 30.0%
ACAATTTCCTAGTATACAGT+AGG + tig0032856:11568-11587 None:intergenic 30.0%
!! TAGGAAATTGTTTTTCCTCT+AGG - tig0032856:11577-11596 Msa1450280:intron 30.0%
!! TGTTTTTGTTGGATCCTTAT+TGG - tig0032856:11607-11626 Msa1450280:intron 30.0%
!!! GAATTTTTTTTTGTGGTGTC+CGG - tig0032856:10246-10265 Msa1450280:three_prime_UTR 30.0%
!!! AATTTTTTTTTGTGGTGTCC+GGG - tig0032856:10247-10266 Msa1450280:three_prime_UTR 30.0%
TGCATAATATATGCAAGATC+CGG + tig0032856:10282-10301 None:intergenic 30.0%
! TTTCTGGAAAAATTTGTGGT+AGG - tig0032856:10695-10714 Msa1450280:intron 30.0%
TGTGGTAGGAATATAGTTTA+AGG - tig0032856:10709-10728 Msa1450280:intron 30.0%
GTGGTAGGAATATAGTTTAA+GGG - tig0032856:10710-10729 Msa1450280:intron 30.0%
TGGTAGGAATATAGTTTAAG+GGG - tig0032856:10711-10730 Msa1450280:intron 30.0%
TATGAGGGAGAATAAATAAG+CGG - tig0032856:10736-10755 Msa1450280:intron 30.0%
GAGAATAAATAAGCGGTTAT+TGG - tig0032856:10743-10762 Msa1450280:intron 30.0%
! TTTTTCTTTGTGGGCTTTTA+CGG + tig0032856:10776-10795 None:intergenic 30.0%
! ACCACTATCTTTTTCTTTGT+GGG + tig0032856:10785-10804 None:intergenic 30.0%
! TGTCCTTTTCTTGAACTATT+AGG - tig0032856:11266-11285 Msa1450280:intron 30.0%
! GTCCTTTTCTTGAACTATTA+GGG - tig0032856:11267-11286 Msa1450280:intron 30.0%
AACCCTAATAGTTCAAGAAA+AGG + tig0032856:11272-11291 None:intergenic 30.0%
TATTTCATCAAGGGAAATAC+GGG - tig0032856:11533-11552 Msa1450280:intron 30.0%
! TTTTGTTCCTACTGTATACT+AGG - tig0032856:11558-11577 Msa1450280:intron 30.0%
ACAATTTCCTAGTATACAGT+AGG + tig0032856:11568-11587 None:intergenic 30.0%
!! TAGGAAATTGTTTTTCCTCT+AGG - tig0032856:11577-11596 Msa1450280:intron 30.0%
!! TGTTTTTGTTGGATCCTTAT+TGG - tig0032856:11607-11626 Msa1450280:intron 30.0%
TGGTGTGGATTCTTTGATTA+TGG - tig0032856:10167-10186 Msa1450280:three_prime_UTR 35.0%
!!! ATTTTTTTTTGTGGTGTCCG+GGG - tig0032856:10248-10267 Msa1450280:three_prime_UTR 35.0%
CATAATATATGCAAGATCCG+GGG + tig0032856:10280-10299 None:intergenic 35.0%
GCATAATATATGCAAGATCC+GGG + tig0032856:10281-10300 None:intergenic 35.0%
! GTACTAAATCCTAGTTGGTA+GGG + tig0032856:10309-10328 None:intergenic 35.0%
! AAGTTTGCTCTTTCTGAGAA+GGG - tig0032856:10488-10507 Msa1450280:three_prime_UTR 35.0%
GGTAGGAATATAGTTTAAGG+GGG - tig0032856:10712-10731 Msa1450280:intron 35.0%
GTAGGAATATAGTTTAAGGG+GGG - tig0032856:10713-10732 Msa1450280:intron 35.0%
! TTTTCTTTGTGGGCTTTTAC+GGG + tig0032856:10775-10794 None:intergenic 35.0%
! CACCACTATCTTTTTCTTTG+TGG + tig0032856:10786-10805 None:intergenic 35.0%
ATTACGAATGTCTTGTGTGA+CGG + tig0032856:10998-11017 None:intergenic 35.0%
AATGCGAAGAAAGAGTGAAA+GGG + tig0032856:11111-11130 None:intergenic 35.0%
AAATGCGAAGAAAGAGTGAA+AGG + tig0032856:11112-11131 None:intergenic 35.0%
CTTAGCATTGTACCTAAAAG+AGG + tig0032856:11189-11208 None:intergenic 35.0%
TTCAAGAAAAGGACAAAACG+CGG + tig0032856:11261-11280 None:intergenic 35.0%
! AAGAACTTTTGCGATGTTTG+AGG - tig0032856:11365-11384 Msa1450280:intron 35.0%
! GCGATTTGAGTTCATTCTAT+AGG - tig0032856:11487-11506 Msa1450280:intron 35.0%
ATAGGCTATCCATTGTGATA+TGG - tig0032856:11505-11524 Msa1450280:intron 35.0%
TAGGCTATCCATTGTGATAT+GGG - tig0032856:11506-11525 Msa1450280:intron 35.0%
AATGGCATACATCACCAATA+AGG + tig0032856:11624-11643 None:intergenic 35.0%
TGGTGTGGATTCTTTGATTA+TGG - tig0032856:10167-10186 Msa1450280:three_prime_UTR 35.0%
!!! ATTTTTTTTTGTGGTGTCCG+GGG - tig0032856:10248-10267 Msa1450280:three_prime_UTR 35.0%
CATAATATATGCAAGATCCG+GGG + tig0032856:10280-10299 None:intergenic 35.0%
GCATAATATATGCAAGATCC+GGG + tig0032856:10281-10300 None:intergenic 35.0%
! GTACTAAATCCTAGTTGGTA+GGG + tig0032856:10309-10328 None:intergenic 35.0%
! AAGTTTGCTCTTTCTGAGAA+GGG - tig0032856:10488-10507 Msa1450280:three_prime_UTR 35.0%
GGTAGGAATATAGTTTAAGG+GGG - tig0032856:10712-10731 Msa1450280:intron 35.0%
GTAGGAATATAGTTTAAGGG+GGG - tig0032856:10713-10732 Msa1450280:intron 35.0%
! TTTTCTTTGTGGGCTTTTAC+GGG + tig0032856:10775-10794 None:intergenic 35.0%
! CACCACTATCTTTTTCTTTG+TGG + tig0032856:10786-10805 None:intergenic 35.0%
ATTACGAATGTCTTGTGTGA+CGG + tig0032856:10998-11017 None:intergenic 35.0%
AATGCGAAGAAAGAGTGAAA+GGG + tig0032856:11111-11130 None:intergenic 35.0%
AAATGCGAAGAAAGAGTGAA+AGG + tig0032856:11112-11131 None:intergenic 35.0%
CTTAGCATTGTACCTAAAAG+AGG + tig0032856:11189-11208 None:intergenic 35.0%
TTCAAGAAAAGGACAAAACG+CGG + tig0032856:11261-11280 None:intergenic 35.0%
! AAGAACTTTTGCGATGTTTG+AGG - tig0032856:11365-11384 Msa1450280:intron 35.0%
! GCGATTTGAGTTCATTCTAT+AGG - tig0032856:11487-11506 Msa1450280:intron 35.0%
ATAGGCTATCCATTGTGATA+TGG - tig0032856:11505-11524 Msa1450280:intron 35.0%
TAGGCTATCCATTGTGATAT+GGG - tig0032856:11506-11525 Msa1450280:intron 35.0%
AATGGCATACATCACCAATA+AGG + tig0032856:11624-11643 None:intergenic 35.0%
TGTCAACTAACCAGACTTAG+GGG + tig0032856:10205-10224 None:intergenic 40.0%
GTGTCAACTAACCAGACTTA+GGG + tig0032856:10206-10225 None:intergenic 40.0%
AGTGTCAACTAACCAGACTT+AGG + tig0032856:10207-10226 None:intergenic 40.0%
CGTACTAAATCCTAGTTGGT+AGG + tig0032856:10310-10329 None:intergenic 40.0%
AAGGCGTACTAAATCCTAGT+TGG + tig0032856:10314-10333 None:intergenic 40.0%
!! TAGTCTATTGGTTTCCTGAG+AGG - tig0032856:10453-10472 Msa1450280:three_prime_UTR 40.0%
! CAAGTTTGCTCTTTCTGAGA+AGG - tig0032856:10487-10506 Msa1450280:three_prime_UTR 40.0%
! TATAGTTTAAGGGGGGTATG+AGG - tig0032856:10720-10739 Msa1450280:intron 40.0%
! ATAGTTTAAGGGGGGTATGA+GGG - tig0032856:10721-10740 Msa1450280:intron 40.0%
GCCCACAAAGAAAAAGATAG+TGG - tig0032856:10781-10800 Msa1450280:CDS 40.0%
TTAGATTAGGGCTTCGTGTT+AGG - tig0032856:10824-10843 Msa1450280:CDS 40.0%
TAGATTAGGGCTTCGTGTTA+GGG - tig0032856:10825-10844 Msa1450280:CDS 40.0%
!! GGGTTTACAAGAAGCATTCT+CGG - tig0032856:10845-10864 Msa1450280:intron 40.0%
!! GATTGAAGAGACGCTGATTT+GGG + tig0032856:10916-10935 None:intergenic 40.0%
AGCGTCTCTTCAATCGTATT+AGG - tig0032856:10921-10940 Msa1450280:intron 40.0%
GCGTCTCTTCAATCGTATTA+GGG - tig0032856:10922-10941 Msa1450280:intron 40.0%
AGAAATTGGCGAAGAAGATG+AGG - tig0032856:11023-11042 Msa1450280:intron 40.0%
GAAAGGGAAAGAATACCTGA+TGG + tig0032856:11095-11114 None:intergenic 40.0%
TCAAGCGAGTGCAATCAAAA+TGG + tig0032856:11642-11661 None:intergenic 40.0%
TGTCAACTAACCAGACTTAG+GGG + tig0032856:10205-10224 None:intergenic 40.0%
GTGTCAACTAACCAGACTTA+GGG + tig0032856:10206-10225 None:intergenic 40.0%
AGTGTCAACTAACCAGACTT+AGG + tig0032856:10207-10226 None:intergenic 40.0%
CGTACTAAATCCTAGTTGGT+AGG + tig0032856:10310-10329 None:intergenic 40.0%
AAGGCGTACTAAATCCTAGT+TGG + tig0032856:10314-10333 None:intergenic 40.0%
!! TAGTCTATTGGTTTCCTGAG+AGG - tig0032856:10453-10472 Msa1450280:three_prime_UTR 40.0%
! CAAGTTTGCTCTTTCTGAGA+AGG - tig0032856:10487-10506 Msa1450280:three_prime_UTR 40.0%
! TATAGTTTAAGGGGGGTATG+AGG - tig0032856:10720-10739 Msa1450280:intron 40.0%
! ATAGTTTAAGGGGGGTATGA+GGG - tig0032856:10721-10740 Msa1450280:intron 40.0%
GCCCACAAAGAAAAAGATAG+TGG - tig0032856:10781-10800 Msa1450280:CDS 40.0%
TTAGATTAGGGCTTCGTGTT+AGG - tig0032856:10824-10843 Msa1450280:CDS 40.0%
TAGATTAGGGCTTCGTGTTA+GGG - tig0032856:10825-10844 Msa1450280:CDS 40.0%
!! GGGTTTACAAGAAGCATTCT+CGG - tig0032856:10845-10864 Msa1450280:intron 40.0%
!! GATTGAAGAGACGCTGATTT+GGG + tig0032856:10916-10935 None:intergenic 40.0%
AGCGTCTCTTCAATCGTATT+AGG - tig0032856:10921-10940 Msa1450280:intron 40.0%
GCGTCTCTTCAATCGTATTA+GGG - tig0032856:10922-10941 Msa1450280:intron 40.0%
AGAAATTGGCGAAGAAGATG+AGG - tig0032856:11023-11042 Msa1450280:intron 40.0%
GAAAGGGAAAGAATACCTGA+TGG + tig0032856:11095-11114 None:intergenic 40.0%
TCAAGCGAGTGCAATCAAAA+TGG + tig0032856:11642-11661 None:intergenic 40.0%
GTCAACTAACCAGACTTAGG+GGG + tig0032856:10204-10223 None:intergenic 45.0%
ATGCATTGTCCCTACCAACT+AGG - tig0032856:10297-10316 Msa1450280:three_prime_UTR 45.0%
TGGTTTCCTGAGAGGTTAGT+TGG - tig0032856:10461-10480 Msa1450280:three_prime_UTR 45.0%
TTGCAACCAACTAACCTCTC+AGG + tig0032856:10470-10489 None:intergenic 45.0%
! CGATTGAAGAGACGCTGATT+TGG + tig0032856:10917-10936 None:intergenic 45.0%
AGAATAGACCCATCCCTTAC+TGG - tig0032856:11047-11066 Msa1450280:intron 45.0%
ATACGGATCCAGTAAGGGAT+GGG + tig0032856:11058-11077 None:intergenic 45.0%
TCCTCATACGGATCCAGTAA+GGG + tig0032856:11063-11082 None:intergenic 45.0%
!! TGGTGTTGTCAGTCCTCATA+CGG + tig0032856:11075-11094 None:intergenic 45.0%
CTCAAAATCCGAGCTTGGTA+CGG + tig0032856:11226-11245 None:intergenic 45.0%
GTCAACTAACCAGACTTAGG+GGG + tig0032856:10204-10223 None:intergenic 45.0%
ATGCATTGTCCCTACCAACT+AGG - tig0032856:10297-10316 Msa1450280:three_prime_UTR 45.0%
TGGTTTCCTGAGAGGTTAGT+TGG - tig0032856:10461-10480 Msa1450280:three_prime_UTR 45.0%
TTGCAACCAACTAACCTCTC+AGG + tig0032856:10470-10489 None:intergenic 45.0%
! CGATTGAAGAGACGCTGATT+TGG + tig0032856:10917-10936 None:intergenic 45.0%
AGAATAGACCCATCCCTTAC+TGG - tig0032856:11047-11066 Msa1450280:intron 45.0%
ATACGGATCCAGTAAGGGAT+GGG + tig0032856:11058-11077 None:intergenic 45.0%
TCCTCATACGGATCCAGTAA+GGG + tig0032856:11063-11082 None:intergenic 45.0%
!! TGGTGTTGTCAGTCCTCATA+CGG + tig0032856:11075-11094 None:intergenic 45.0%
CTCAAAATCCGAGCTTGGTA+CGG + tig0032856:11226-11245 None:intergenic 45.0%
AACTAACCAGACTTAGGGGG+AGG + tig0032856:10201-10220 None:intergenic 50.0%
! TTTGTGGGCTTTTACGGGCT+CGG + tig0032856:10770-10789 None:intergenic 50.0%
! CCATTTTCGATCCTTGCCTC+CGG + tig0032856:10889-10908 None:intergenic 50.0%
CATACGGATCCAGTAAGGGA+TGG + tig0032856:11059-11078 None:intergenic 50.0%
TCCCTTACTGGATCCGTATG+AGG - tig0032856:11059-11078 Msa1450280:intron 50.0%
GTCCTCATACGGATCCAGTA+AGG + tig0032856:11064-11083 None:intergenic 50.0%
TGAGGACTGACAACACCATC+AGG - tig0032856:11077-11096 Msa1450280:intron 50.0%
! CGTACCAAGCTCGGATTTTG+AGG - tig0032856:11224-11243 Msa1450280:intron 50.0%
AGGACCTCAAAATCCGAGCT+TGG + tig0032856:11231-11250 None:intergenic 50.0%
AACTAACCAGACTTAGGGGG+AGG + tig0032856:10201-10220 None:intergenic 50.0%
! TTTGTGGGCTTTTACGGGCT+CGG + tig0032856:10770-10789 None:intergenic 50.0%
! CCATTTTCGATCCTTGCCTC+CGG + tig0032856:10889-10908 None:intergenic 50.0%
CATACGGATCCAGTAAGGGA+TGG + tig0032856:11059-11078 None:intergenic 50.0%
TCCCTTACTGGATCCGTATG+AGG - tig0032856:11059-11078 Msa1450280:intron 50.0%
GTCCTCATACGGATCCAGTA+AGG + tig0032856:11064-11083 None:intergenic 50.0%
TGAGGACTGACAACACCATC+AGG - tig0032856:11077-11096 Msa1450280:intron 50.0%
! CGTACCAAGCTCGGATTTTG+AGG - tig0032856:11224-11243 Msa1450280:intron 50.0%
AGGACCTCAAAATCCGAGCT+TGG + tig0032856:11231-11250 None:intergenic 50.0%
CATAAGCCTCCCCCTAAGTC+TGG - tig0032856:10192-10211 Msa1450280:three_prime_UTR 55.0%
AAGATCCGGGGTTTGAACCC+CGG + tig0032856:10268-10287 None:intergenic 55.0%
TTGCCTCCGGAAATGCTCGA+CGG + tig0032856:10876-10895 None:intergenic 55.0%
CCGGAGGCAAGGATCGAAAA+TGG - tig0032856:10886-10905 Msa1450280:intron 55.0%
! ACAATGCTAAGCGCCGTCAC+TGG - tig0032856:11198-11217 Msa1450280:intron 55.0%
GGACAAAACGCGGCAAAGCA+AGG + tig0032856:11251-11270 None:intergenic 55.0%
CATAAGCCTCCCCCTAAGTC+TGG - tig0032856:10192-10211 Msa1450280:three_prime_UTR 55.0%
AAGATCCGGGGTTTGAACCC+CGG + tig0032856:10268-10287 None:intergenic 55.0%
TTGCCTCCGGAAATGCTCGA+CGG + tig0032856:10876-10895 None:intergenic 55.0%
CCGGAGGCAAGGATCGAAAA+TGG - tig0032856:10886-10905 Msa1450280:intron 55.0%
! ACAATGCTAAGCGCCGTCAC+TGG - tig0032856:11198-11217 Msa1450280:intron 55.0%
GGACAAAACGCGGCAAAGCA+AGG + tig0032856:11251-11270 None:intergenic 55.0%
GTGCAGCCGTCGAGCATTTC+CGG - tig0032856:10867-10886 Msa1450280:intron 60.0%
GTCGAGCATTTCCGGAGGCA+AGG - tig0032856:10875-10894 Msa1450280:intron 60.0%
GTGCAGCCGTCGAGCATTTC+CGG - tig0032856:10867-10886 Msa1450280:intron 60.0%
GTCGAGCATTTCCGGAGGCA+AGG - tig0032856:10875-10894 Msa1450280:intron 60.0%
GGTGTCCGGGGTTCAAACCC+CGG - tig0032856:10260-10279 Msa1450280:three_prime_UTR 65.0%
CAGCCGTCGAGCATTTCCGG+AGG - tig0032856:10870-10889 Msa1450280:intron 65.0%
GCTTGGTACGGCGCCAGTGA+CGG + tig0032856:11214-11233 None:intergenic 65.0%
CACTGGCGCCGTACCAAGCT+CGG - tig0032856:11215-11234 Msa1450280:intron 65.0%
GGTGTCCGGGGTTCAAACCC+CGG - tig0032856:10260-10279 Msa1450280:three_prime_UTR 65.0%
CAGCCGTCGAGCATTTCCGG+AGG - tig0032856:10870-10889 Msa1450280:intron 65.0%
GCTTGGTACGGCGCCAGTGA+CGG + tig0032856:11214-11233 None:intergenic 65.0%
CACTGGCGCCGTACCAAGCT+CGG - tig0032856:11215-11234 Msa1450280:intron 65.0%
Chromosome Type Strat End Strand Name
tig0032856 gene 10153 11690 10153 ID=Msa1450280;Name=Msa1450280
tig0032856 mRNA 10153 11690 10153 ID=Msa1450280-mRNA-1;Parent=Msa1450280;Name=Msa1450280-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.66|0.5|0.75|0.66|0.5|4|446|87
tig0032856 exon 10153 10647 10153 ID=Msa1450280-mRNA-1:exon:17388;Parent=Msa1450280-mRNA-1
tig0032856 exon 10745 10848 10745 ID=Msa1450280-mRNA-1:exon:17387;Parent=Msa1450280-mRNA-1
tig0032856 exon 10936 11010 10936 ID=Msa1450280-mRNA-1:exon:17386;Parent=Msa1450280-mRNA-1
tig0032856 exon 11655 11690 11655 ID=Msa1450280-mRNA-1:exon:17385;Parent=Msa1450280-mRNA-1
tig0032856 CDS 11655 11690 11655 ID=Msa1450280-mRNA-1:cds;Parent=Msa1450280-mRNA-1
tig0032856 CDS 10936 11010 10936 ID=Msa1450280-mRNA-1:cds;Parent=Msa1450280-mRNA-1
tig0032856 CDS 10745 10848 10745 ID=Msa1450280-mRNA-1:cds;Parent=Msa1450280-mRNA-1
tig0032856 CDS 10599 10647 10599 ID=Msa1450280-mRNA-1:cds;Parent=Msa1450280-mRNA-1
tig0032856 three_prime_UTR 10153 10598 10153 ID=Msa1450280-mRNA-1:three_prime_utr;Parent=Msa1450280-mRNA-1
Gene Sequence

>Msa1450280

ATGTTGGCTGCTAATGGTGTGGATTCTTTGATTATGGGCTTCGTGTTAGGGTTTACAAGAAGCATTCTCGGTGCAGCCGTCGAGCATTTCCGGAGGCAAGGATCGAAAATGCCGTCACACAAGACATTCGTAATCAAGAAGAAATTGGCGAAGAAGATGAGGCAGAATAGACCCATCCCTTACTGGATCCGTATGAGGACTGACAACACCATCAGGTACAATGCTAAGCGCCGTCACTGGCGCCGTACCAAGCTCGGATTTTGA

Protein sequence

>Msa1450280

MLAANGVDSLIMGFVLGFTRSILGAAVEHFRRQGSKMPSHKTFVIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF*