AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0806120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0806120 MtrunA17_Chr3g0087301 54.255 188 46 1 1 148 894 1081 1.31e-53 182
Msa0806120 MtrunA17_Chr5g0414211 46.970 198 42 2 1 158 229 403 4.99e-45 152
Msa0806120 MtrunA17_Chr5g0414311 41.451 193 72 2 1 152 914 1106 1.98e-42 150
Msa0806120 MtrunA17_Chr5g0415471 42.857 189 67 2 1 148 911 1099 3.86e-42 149
Msa0806120 MtrunA17_Chr5g0415481 54.472 123 46 4 2 115 338 459 3.16e-33 122
Msa0806120 MtrunA17_Chr5g0415511 48.344 151 38 1 38 148 549 699 3.32e-33 124
Msa0806120 MtrunA17_Chr4g0027251 37.162 148 83 3 1 147 905 1043 4.07e-23 95.1
Msa0806120 MtrunA17_Chr5g0414181 66.176 68 23 0 1 68 905 972 1.87e-20 87.4
Msa0806120 MtrunA17_Chr6g0468101 28.708 209 84 4 4 150 852 1057 4.67e-20 86.3
Msa0806120 MtrunA17_Chr3g0085931 29.907 214 87 4 4 154 893 1106 7.19e-20 85.9
Msa0806120 MtrunA17_Chr6g0468021 29.703 202 78 4 4 141 868 1069 1.83e-18 81.6
Msa0806120 MtrunA17_Chr5g0430291 34.247 146 64 4 1 146 902 1015 2.39e-18 81.3
Msa0806120 MtrunA17_Chr6g0468381 28.713 202 82 3 7 146 308 509 1.03e-17 79.3
Msa0806120 MtrunA17_Chr8g0351811 29.187 209 86 5 4 150 415 623 1.04e-17 79.3
Msa0806120 MtrunA17_Chr6g0468331 28.061 196 79 4 8 141 476 671 1.29e-16 76.3
Msa0806120 MtrunA17_Chr5g0414301 38.776 147 76 4 1 144 432 567 1.39e-16 76.3
Msa0806120 MtrunA17_Chr7g0244231 34.247 146 64 4 1 146 893 1006 2.46e-16 75.5
Msa0806120 MtrunA17_Chr6g0468341 28.095 210 85 3 7 150 698 907 2.87e-16 75.5
Msa0806120 MtrunA17_Chr1g0155321 32.877 146 66 4 1 146 895 1008 5.25e-16 74.7
Msa0806120 MtrunA17_Chr3g0123111 28.571 196 79 4 7 141 890 1085 1.24e-15 73.6
Msa0806120 MtrunA17_Chr5g0430721 32.192 146 67 4 1 146 940 1053 1.67e-15 73.2
Msa0806120 MtrunA17_Chr5g0430641 35.833 120 68 2 26 144 898 1009 2.54e-15 72.8
Msa0806120 MtrunA17_Chr6g0467921 29.412 204 83 6 4 146 103 306 4.08e-15 71.6
Msa0806120 MtrunA17_Chr6g0468121 27.830 212 88 6 4 150 871 1082 1.16e-14 70.9
Msa0806120 MtrunA17_Chr6g0468201 27.778 198 81 5 6 141 477 674 2.61e-14 69.7
Msa0806120 MtrunA17_Chr5g0410481 32.192 146 87 5 2 144 935 1071 3.24e-14 69.3
Msa0806120 MtrunA17_Chr5g0430621 31.507 146 68 3 1 146 898 1011 3.41e-14 69.3
Msa0806120 MtrunA17_Chr5g0430511 35.246 122 65 3 26 147 903 1010 3.72e-14 69.3
Msa0806120 MtrunA17_Chr8g0352861 31.937 191 81 8 7 152 1058 1244 4.18e-14 68.9
Msa0806120 MtrunA17_Chr6g0470011 28.141 199 82 5 4 141 888 1086 9.19e-14 68.2
Msa0806120 MtrunA17_Chr6g0468151 29.592 196 74 5 16 147 896 1091 1.02e-13 68.2
Msa0806120 MtrunA17_Chr6g0468131 27.404 208 87 4 4 147 145 352 1.05e-13 67.4
Msa0806120 MtrunA17_Chr6g0468451 24.299 214 96 3 5 152 893 1106 2.25e-13 67.0
Msa0806120 MtrunA17_Chr8g0355411 29.268 164 97 4 3 148 681 843 2.55e-13 66.6
Msa0806120 MtrunA17_Chr5g0430581 33.775 151 63 6 1 146 862 980 4.81e-13 65.9
Msa0806120 MtrunA17_Chr6g0470081 28.643 199 81 6 4 141 888 1086 5.27e-13 65.9
Msa0806120 MtrunA17_Chr5g0430441 32.653 147 64 5 2 147 876 988 1.69e-12 64.3
Msa0806120 MtrunA17_Chr6g0470001 27.536 207 89 5 4 149 495 701 3.82e-12 63.5
Msa0806120 MtrunA17_Chr5g0431051 33.108 148 64 5 1 144 871 987 4.33e-12 63.2
Msa0806120 MtrunA17_Chr5g0410161 29.697 165 97 4 2 147 1072 1236 6.31e-12 62.8
Msa0806120 MtrunA17_Chr6g0468251 25.604 207 90 3 5 147 233 439 8.43e-12 62.4
Msa0806120 MtrunA17_Chr3g0082131 28.395 162 87 4 8 150 1059 1210 1.38e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 47 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTATTTCTGAAGAATTT+TGG 0.096269 5_3:-23574764 None:intergenic
ATTTATGGTTGCAGTGAGTT+AGG 0.250431 5_3:+23574978 Msa0806120:intron
AACAGTAAGGTTACTGATTT+CGG 0.271928 5_3:-23574580 None:intergenic
CATTGATGTACAAAACAAAA+TGG 0.332678 5_3:+23575058 Msa0806120:CDS
CAAAATTCTTCAGAAATAGA+AGG 0.344587 5_3:+23574765 Msa0806120:CDS
AGATTGAATGTATCTTAGTT+AGG 0.344954 5_3:+23575828 Msa0806120:three_prime_UTR
CTTAAGATATTGAATATTGC+GGG 0.346575 5_3:+23574678 Msa0806120:CDS
AATTTGTGATCATTATTTCT+TGG 0.363068 5_3:-23574605 None:intergenic
CGCGGATTTAATTTGATATG+AGG 0.369514 5_3:+23575798 Msa0806120:three_prime_UTR
CTTCGTGTAGGCACAACTTC+AGG 0.406268 5_3:-23575738 None:intergenic
TTTATGGTTGCAGTGAGTTA+GGG 0.415060 5_3:+23574979 Msa0806120:intron
TCAGGTAGGGATGCCAGGTT+TGG 0.436582 5_3:-23574846 None:intergenic
ACAAAACTTCGATTTAATCA+AGG 0.444149 5_3:+23575916 Msa0806120:three_prime_UTR
ACCAGTCAGGTAGGGATGCC+AGG 0.448571 5_3:-23574851 None:intergenic
ACGAAACCTTACTTCCCTAA+AGG 0.460750 5_3:+23574515 Msa0806120:CDS
CTTCTCAATGCTGTTTGAAG+TGG 0.462373 5_3:+23575711 Msa0806120:exon
GGCTGGGAGTTGCTCAAGGT+TGG 0.466786 5_3:-23574559 None:intergenic
TTATTTCTTGGATAACAGTA+AGG 0.481390 5_3:-23574593 None:intergenic
GTAAGGTTACTGATTTCGGC+TGG 0.482083 5_3:-23574576 None:intergenic
TAGCAAGGACAAACTGTTGA+AGG 0.492838 5_3:-23575770 None:intergenic
ACCTGGCATCCCTACCTGAC+TGG 0.504515 5_3:+23574850 Msa0806120:CDS
TTTCGGCTGGGAGTTGCTCA+AGG 0.507552 5_3:-23574563 None:intergenic
CCTAGGTTTCCTAACCAGTC+AGG 0.511917 5_3:-23574864 None:intergenic
ATGGCCTACGTAGGAGGAAG+AGG 0.520815 5_3:+23575083 Msa0806120:CDS
AAGAGAACACAGGTGAGGAT+TGG 0.524366 5_3:+23575012 Msa0806120:CDS
TGAAGTTGTGCCTACACGAA+GGG 0.552792 5_3:+23575740 Msa0806120:three_prime_UTR
TTGACAGATGAAGTATTACA+AGG 0.554955 5_3:+23574645 Msa0806120:CDS
TCTTAAGATATTGAATATTG+CGG 0.559358 5_3:+23574677 Msa0806120:CDS
ATGGCAATGGCCTACGTAGG+AGG 0.564493 5_3:+23575077 Msa0806120:CDS
CTTCATCTGTCAATGACTTG+AGG 0.571457 5_3:-23574635 None:intergenic
GGTTTCCTAACCAGTCAGGT+AGG 0.573605 5_3:-23574860 None:intergenic
ATTGAGTCATCTTCCAAACC+TGG 0.589554 5_3:+23574833 Msa0806120:CDS
GTTTCCTAACCAGTCAGGTA+GGG 0.595827 5_3:-23574859 None:intergenic
TAAATCCGCGTGTCTTAGCA+AGG 0.596832 5_3:-23575785 None:intergenic
TAAGGTTACTGATTTCGGCT+GGG 0.597787 5_3:-23574575 None:intergenic
TTATGGTTGCAGTGAGTTAG+GGG 0.607014 5_3:+23574980 Msa0806120:intron
AAAACCTCTTCCTCCTACGT+AGG 0.613710 5_3:-23575087 None:intergenic
TGTACAAAACAAAATGGCAA+TGG 0.629821 5_3:+23575064 Msa0806120:CDS
CTGAAGTTGTGCCTACACGA+AGG 0.632419 5_3:+23575739 Msa0806120:three_prime_UTR
TTAAGATATTGAATATTGCG+GGG 0.636428 5_3:+23574679 Msa0806120:CDS
GAAGTTGTGCCTACACGAAG+GGG 0.644583 5_3:+23575741 Msa0806120:three_prime_UTR
AGGTAGAATCCCCTTCGTGT+AGG 0.647564 5_3:-23575750 None:intergenic
TGACAGATGAAGTATTACAA+GGG 0.675775 5_3:+23574646 Msa0806120:CDS
AAAATGGCAATGGCCTACGT+AGG 0.683299 5_3:+23575074 Msa0806120:CDS
ATGTAAAGAGAACACAGGTG+AGG 0.694802 5_3:+23575007 Msa0806120:CDS
TTTGTCCTTGCTAAGACACG+CGG 0.709402 5_3:+23575780 Msa0806120:three_prime_UTR
GAACGATGTAAAGAGAACAC+AGG 0.739326 5_3:+23575002 Msa0806120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTAAAATTTTGAGAATTTA+TGG + chr5_3:23574963-23574982 Msa0806120:intron 15.0%
!!! TATTTTCAACTATTATTACA+TGG - chr5_3:23575528-23575547 None:intergenic 15.0%
!!! CTTAAAATTTTGAGAATTTA+TGG + chr5_3:23574963-23574982 Msa0806120:intron 15.0%
!!! TATTTTCAACTATTATTACA+TGG - chr5_3:23575528-23575547 None:intergenic 15.0%
!!! AATTTGTGATCATTATTTCT+TGG - chr5_3:23574608-23574627 None:intergenic 20.0%
!! TCTTAAGATATTGAATATTG+CGG + chr5_3:23574677-23574696 Msa0806120:CDS 20.0%
!!! TATTGAATGTGAGTTATTTT+TGG - chr5_3:23575038-23575057 None:intergenic 20.0%
!!! TATCAATGTTCTTTTTTCTT+TGG - chr5_3:23575368-23575387 None:intergenic 20.0%
!! AAAGAAAAAAGAACATTGAT+AGG + chr5_3:23575367-23575386 Msa0806120:intron 20.0%
!! AAGAAAAAAGAACATTGATA+GGG + chr5_3:23575368-23575387 Msa0806120:intron 20.0%
!! AAAATGATAAAACTTAAGTG+AGG - chr5_3:23575628-23575647 None:intergenic 20.0%
!!! AATTTGTGATCATTATTTCT+TGG - chr5_3:23574608-23574627 None:intergenic 20.0%
!! TCTTAAGATATTGAATATTG+CGG + chr5_3:23574677-23574696 Msa0806120:CDS 20.0%
!!! TATTGAATGTGAGTTATTTT+TGG - chr5_3:23575038-23575057 None:intergenic 20.0%
!!! TATCAATGTTCTTTTTTCTT+TGG - chr5_3:23575368-23575387 None:intergenic 20.0%
!! AAAGAAAAAAGAACATTGAT+AGG + chr5_3:23575367-23575386 Msa0806120:intron 20.0%
!! AAGAAAAAAGAACATTGATA+GGG + chr5_3:23575368-23575387 Msa0806120:intron 20.0%
!! AAAATGATAAAACTTAAGTG+AGG - chr5_3:23575628-23575647 None:intergenic 20.0%
! ACAAATGTCAAAAACCTTTA+GGG - chr5_3:23574532-23574551 None:intergenic 25.0%
!! TTATTTCTTGGATAACAGTA+AGG - chr5_3:23574596-23574615 None:intergenic 25.0%
! CTTAAGATATTGAATATTGC+GGG + chr5_3:23574678-23574697 Msa0806120:CDS 25.0%
! TTAAGATATTGAATATTGCG+GGG + chr5_3:23574679-23574698 Msa0806120:CDS 25.0%
!!! CTTCTATTTCTGAAGAATTT+TGG - chr5_3:23574767-23574786 None:intergenic 25.0%
! CAAAATTCTTCAGAAATAGA+AGG + chr5_3:23574765-23574784 Msa0806120:CDS 25.0%
!!! TCAAAATTTTAAGACCAGTA+AGG - chr5_3:23574956-23574975 None:intergenic 25.0%
! CATTGATGTACAAAACAAAA+TGG + chr5_3:23575058-23575077 Msa0806120:CDS 25.0%
! TTACAACTAAGTAAAGAAGT+TGG + chr5_3:23575232-23575251 Msa0806120:intron 25.0%
! TACAACTAAGTAAAGAAGTT+GGG + chr5_3:23575233-23575252 Msa0806120:intron 25.0%
! ACAGGATACAATTAATTAGA+AGG - chr5_3:23575675-23575694 None:intergenic 25.0%
! TTCTAATTAATTGTATCCTG+TGG + chr5_3:23575674-23575693 Msa0806120:intron 25.0%
! AGATTGAATGTATCTTAGTT+AGG + chr5_3:23575828-23575847 Msa0806120:three_prime_UTR 25.0%
! ACAAAACTTCGATTTAATCA+AGG + chr5_3:23575916-23575935 Msa0806120:three_prime_UTR 25.0%
! ACAAATGTCAAAAACCTTTA+GGG - chr5_3:23574532-23574551 None:intergenic 25.0%
!! TTATTTCTTGGATAACAGTA+AGG - chr5_3:23574596-23574615 None:intergenic 25.0%
! CTTAAGATATTGAATATTGC+GGG + chr5_3:23574678-23574697 Msa0806120:CDS 25.0%
! TTAAGATATTGAATATTGCG+GGG + chr5_3:23574679-23574698 Msa0806120:CDS 25.0%
!!! CTTCTATTTCTGAAGAATTT+TGG - chr5_3:23574767-23574786 None:intergenic 25.0%
! CAAAATTCTTCAGAAATAGA+AGG + chr5_3:23574765-23574784 Msa0806120:CDS 25.0%
!!! TCAAAATTTTAAGACCAGTA+AGG - chr5_3:23574956-23574975 None:intergenic 25.0%
! CATTGATGTACAAAACAAAA+TGG + chr5_3:23575058-23575077 Msa0806120:CDS 25.0%
! TTACAACTAAGTAAAGAAGT+TGG + chr5_3:23575232-23575251 Msa0806120:intron 25.0%
! TACAACTAAGTAAAGAAGTT+GGG + chr5_3:23575233-23575252 Msa0806120:intron 25.0%
! ACAGGATACAATTAATTAGA+AGG - chr5_3:23575675-23575694 None:intergenic 25.0%
! TTCTAATTAATTGTATCCTG+TGG + chr5_3:23575674-23575693 Msa0806120:intron 25.0%
! AGATTGAATGTATCTTAGTT+AGG + chr5_3:23575828-23575847 Msa0806120:three_prime_UTR 25.0%
! ACAAAACTTCGATTTAATCA+AGG + chr5_3:23575916-23575935 Msa0806120:three_prime_UTR 25.0%
CACAAATGTCAAAAACCTTT+AGG - chr5_3:23574533-23574552 None:intergenic 30.0%
!! AACAGTAAGGTTACTGATTT+CGG - chr5_3:23574583-23574602 None:intergenic 30.0%
! TTGACAGATGAAGTATTACA+AGG + chr5_3:23574645-23574664 Msa0806120:CDS 30.0%
! TGACAGATGAAGTATTACAA+GGG + chr5_3:23574646-23574665 Msa0806120:CDS 30.0%
! AGAAATAGAAGGTTTTCATG+AGG + chr5_3:23574776-23574795 Msa0806120:CDS 30.0%
! GAAATAGAAGGTTTTCATGA+GGG + chr5_3:23574777-23574796 Msa0806120:CDS 30.0%
! CTATAATTTGAAGCAAACCT+AGG - chr5_3:23574884-23574903 None:intergenic 30.0%
TGTACAAAACAAAATGGCAA+TGG + chr5_3:23575064-23575083 Msa0806120:CDS 30.0%
CAAGACAAAAACATCATATG+TGG - chr5_3:23575186-23575205 None:intergenic 30.0%
!! CACATATGATGTTTTTGTCT+TGG + chr5_3:23575184-23575203 Msa0806120:intron 30.0%
TTTCAAATTGTAAGCTCAAC+TGG - chr5_3:23575285-23575304 None:intergenic 30.0%
!! ATAAGCTTTTGAAGAGATTC+TGG + chr5_3:23575398-23575417 Msa0806120:intron 30.0%
!! TAAGCTTTTGAAGAGATTCT+GGG + chr5_3:23575399-23575418 Msa0806120:intron 30.0%
TTGGAATCTACAAAAGCAAA+AGG - chr5_3:23575467-23575486 None:intergenic 30.0%
AATGCATGACATTACTGTAA+TGG + chr5_3:23575578-23575597 Msa0806120:intron 30.0%
GAAAATATATCCGTGAACTA+AGG + chr5_3:23575600-23575619 Msa0806120:intron 30.0%
! TCTTTTCTCACTACTTCTAT+CGG + chr5_3:23575886-23575905 Msa0806120:three_prime_UTR 30.0%
CACAAATGTCAAAAACCTTT+AGG - chr5_3:23574533-23574552 None:intergenic 30.0%
!! AACAGTAAGGTTACTGATTT+CGG - chr5_3:23574583-23574602 None:intergenic 30.0%
! TTGACAGATGAAGTATTACA+AGG + chr5_3:23574645-23574664 Msa0806120:CDS 30.0%
! TGACAGATGAAGTATTACAA+GGG + chr5_3:23574646-23574665 Msa0806120:CDS 30.0%
! AGAAATAGAAGGTTTTCATG+AGG + chr5_3:23574776-23574795 Msa0806120:CDS 30.0%
! GAAATAGAAGGTTTTCATGA+GGG + chr5_3:23574777-23574796 Msa0806120:CDS 30.0%
! CTATAATTTGAAGCAAACCT+AGG - chr5_3:23574884-23574903 None:intergenic 30.0%
TGTACAAAACAAAATGGCAA+TGG + chr5_3:23575064-23575083 Msa0806120:CDS 30.0%
CAAGACAAAAACATCATATG+TGG - chr5_3:23575186-23575205 None:intergenic 30.0%
!! CACATATGATGTTTTTGTCT+TGG + chr5_3:23575184-23575203 Msa0806120:intron 30.0%
TTTCAAATTGTAAGCTCAAC+TGG - chr5_3:23575285-23575304 None:intergenic 30.0%
!! ATAAGCTTTTGAAGAGATTC+TGG + chr5_3:23575398-23575417 Msa0806120:intron 30.0%
!! TAAGCTTTTGAAGAGATTCT+GGG + chr5_3:23575399-23575418 Msa0806120:intron 30.0%
TTGGAATCTACAAAAGCAAA+AGG - chr5_3:23575467-23575486 None:intergenic 30.0%
AATGCATGACATTACTGTAA+TGG + chr5_3:23575578-23575597 Msa0806120:intron 30.0%
GAAAATATATCCGTGAACTA+AGG + chr5_3:23575600-23575619 Msa0806120:intron 30.0%
! TCTTTTCTCACTACTTCTAT+CGG + chr5_3:23575886-23575905 Msa0806120:three_prime_UTR 30.0%
! CAAAAACCTTTAGGGAAGTA+AGG - chr5_3:23574524-23574543 None:intergenic 35.0%
ATTTATGGTTGCAGTGAGTT+AGG + chr5_3:23574978-23574997 Msa0806120:intron 35.0%
TTTATGGTTGCAGTGAGTTA+GGG + chr5_3:23574979-23574998 Msa0806120:intron 35.0%
AATATAGTCCCTGCTGTTAT+CGG + chr5_3:23575429-23575448 Msa0806120:intron 35.0%
!! CGCGGATTTAATTTGATATG+AGG + chr5_3:23575798-23575817 Msa0806120:three_prime_UTR 35.0%
! CAAAAACCTTTAGGGAAGTA+AGG - chr5_3:23574524-23574543 None:intergenic 35.0%
ATTTATGGTTGCAGTGAGTT+AGG + chr5_3:23574978-23574997 Msa0806120:intron 35.0%
TTTATGGTTGCAGTGAGTTA+GGG + chr5_3:23574979-23574998 Msa0806120:intron 35.0%
AATATAGTCCCTGCTGTTAT+CGG + chr5_3:23575429-23575448 Msa0806120:intron 35.0%
!! CGCGGATTTAATTTGATATG+AGG + chr5_3:23575798-23575817 Msa0806120:three_prime_UTR 35.0%
ACGAAACCTTACTTCCCTAA+AGG + chr5_3:23574515-23574534 Msa0806120:CDS 40.0%
!! TAAGGTTACTGATTTCGGCT+GGG - chr5_3:23574578-23574597 None:intergenic 40.0%
CTTCATCTGTCAATGACTTG+AGG - chr5_3:23574638-23574657 None:intergenic 40.0%
ATTGAGTCATCTTCCAAACC+TGG + chr5_3:23574833-23574852 Msa0806120:CDS 40.0%
!! GTAAGGCATTGAATGCTCAT+GGG - chr5_3:23574939-23574958 None:intergenic 40.0%
!! AGTAAGGCATTGAATGCTCA+TGG - chr5_3:23574940-23574959 None:intergenic 40.0%
ATGAGCATTCAATGCCTTAC+TGG + chr5_3:23574939-23574958 Msa0806120:intron 40.0%
TTATGGTTGCAGTGAGTTAG+GGG + chr5_3:23574980-23574999 Msa0806120:intron 40.0%
GAACGATGTAAAGAGAACAC+AGG + chr5_3:23575002-23575021 Msa0806120:CDS 40.0%
ATGTAAAGAGAACACAGGTG+AGG + chr5_3:23575007-23575026 Msa0806120:CDS 40.0%
! GTAGGAGGAAGAGGTTTTTA+TGG + chr5_3:23575092-23575111 Msa0806120:intron 40.0%
CTGGAATAAGAAGACAGTCT+TGG - chr5_3:23575266-23575285 None:intergenic 40.0%
AAATGCATCTTCACGATGCT+TGG - chr5_3:23575486-23575505 None:intergenic 40.0%
AGCATCGTGAAGATGCATTT+AGG + chr5_3:23575486-23575505 Msa0806120:intron 40.0%
AAGTGAGGTTCCTTAGTTCA+CGG - chr5_3:23575613-23575632 None:intergenic 40.0%
! CTTCTCAATGCTGTTTGAAG+TGG + chr5_3:23575711-23575730 Msa0806120:exon 40.0%
TAGCAAGGACAAACTGTTGA+AGG - chr5_3:23575773-23575792 None:intergenic 40.0%
ACGAAACCTTACTTCCCTAA+AGG + chr5_3:23574515-23574534 Msa0806120:CDS 40.0%
!! TAAGGTTACTGATTTCGGCT+GGG - chr5_3:23574578-23574597 None:intergenic 40.0%
CTTCATCTGTCAATGACTTG+AGG - chr5_3:23574638-23574657 None:intergenic 40.0%
ATTGAGTCATCTTCCAAACC+TGG + chr5_3:23574833-23574852 Msa0806120:CDS 40.0%
!! GTAAGGCATTGAATGCTCAT+GGG - chr5_3:23574939-23574958 None:intergenic 40.0%
!! AGTAAGGCATTGAATGCTCA+TGG - chr5_3:23574940-23574959 None:intergenic 40.0%
ATGAGCATTCAATGCCTTAC+TGG + chr5_3:23574939-23574958 Msa0806120:intron 40.0%
TTATGGTTGCAGTGAGTTAG+GGG + chr5_3:23574980-23574999 Msa0806120:intron 40.0%
GAACGATGTAAAGAGAACAC+AGG + chr5_3:23575002-23575021 Msa0806120:CDS 40.0%
ATGTAAAGAGAACACAGGTG+AGG + chr5_3:23575007-23575026 Msa0806120:CDS 40.0%
! GTAGGAGGAAGAGGTTTTTA+TGG + chr5_3:23575092-23575111 Msa0806120:intron 40.0%
CTGGAATAAGAAGACAGTCT+TGG - chr5_3:23575266-23575285 None:intergenic 40.0%
AAATGCATCTTCACGATGCT+TGG - chr5_3:23575486-23575505 None:intergenic 40.0%
AGCATCGTGAAGATGCATTT+AGG + chr5_3:23575486-23575505 Msa0806120:intron 40.0%
AAGTGAGGTTCCTTAGTTCA+CGG - chr5_3:23575613-23575632 None:intergenic 40.0%
! CTTCTCAATGCTGTTTGAAG+TGG + chr5_3:23575711-23575730 Msa0806120:exon 40.0%
TAGCAAGGACAAACTGTTGA+AGG - chr5_3:23575773-23575792 None:intergenic 40.0%
!! GTAAGGTTACTGATTTCGGC+TGG - chr5_3:23574579-23574598 None:intergenic 45.0%
GTTTCCTAACCAGTCAGGTA+GGG - chr5_3:23574862-23574881 None:intergenic 45.0%
AAGAGAACACAGGTGAGGAT+TGG + chr5_3:23575012-23575031 Msa0806120:CDS 45.0%
AAAATGGCAATGGCCTACGT+AGG + chr5_3:23575074-23575093 Msa0806120:CDS 45.0%
AAAACCTCTTCCTCCTACGT+AGG - chr5_3:23575090-23575109 None:intergenic 45.0%
TCTTGCTTCCGATAACAGCA+GGG - chr5_3:23575440-23575459 None:intergenic 45.0%
TGAAGTTGTGCCTACACGAA+GGG + chr5_3:23575740-23575759 Msa0806120:three_prime_UTR 45.0%
TTTGTCCTTGCTAAGACACG+CGG + chr5_3:23575780-23575799 Msa0806120:three_prime_UTR 45.0%
TAAATCCGCGTGTCTTAGCA+AGG - chr5_3:23575788-23575807 None:intergenic 45.0%
!! GTAAGGTTACTGATTTCGGC+TGG - chr5_3:23574579-23574598 None:intergenic 45.0%
GTTTCCTAACCAGTCAGGTA+GGG - chr5_3:23574862-23574881 None:intergenic 45.0%
AAGAGAACACAGGTGAGGAT+TGG + chr5_3:23575012-23575031 Msa0806120:CDS 45.0%
AAAATGGCAATGGCCTACGT+AGG + chr5_3:23575074-23575093 Msa0806120:CDS 45.0%
AAAACCTCTTCCTCCTACGT+AGG - chr5_3:23575090-23575109 None:intergenic 45.0%
TCTTGCTTCCGATAACAGCA+GGG - chr5_3:23575440-23575459 None:intergenic 45.0%
TGAAGTTGTGCCTACACGAA+GGG + chr5_3:23575740-23575759 Msa0806120:three_prime_UTR 45.0%
TTTGTCCTTGCTAAGACACG+CGG + chr5_3:23575780-23575799 Msa0806120:three_prime_UTR 45.0%
TAAATCCGCGTGTCTTAGCA+AGG - chr5_3:23575788-23575807 None:intergenic 45.0%
GGTTTCCTAACCAGTCAGGT+AGG - chr5_3:23574863-23574882 None:intergenic 50.0%
CCTAGGTTTCCTAACCAGTC+AGG - chr5_3:23574867-23574886 None:intergenic 50.0%
! CCTGACTGGTTAGGAAACCT+AGG + chr5_3:23574864-23574883 Msa0806120:intron 50.0%
! GGCATTGAATGCTCATGGGA+AGG - chr5_3:23574935-23574954 None:intergenic 50.0%
AAGTGCACTCGTCATTGGAC+AGG - chr5_3:23575335-23575354 None:intergenic 50.0%
TGTCCAATGACGAGTGCACT+TGG + chr5_3:23575334-23575353 Msa0806120:intron 50.0%
TCACCAAGTGCACTCGTCAT+TGG - chr5_3:23575340-23575359 None:intergenic 50.0%
CTCTTGCTTCCGATAACAGC+AGG - chr5_3:23575441-23575460 None:intergenic 50.0%
CTGCTGTTATCGGAAGCAAG+AGG + chr5_3:23575439-23575458 Msa0806120:intron 50.0%
CTTCGTGTAGGCACAACTTC+AGG - chr5_3:23575741-23575760 None:intergenic 50.0%
CTGAAGTTGTGCCTACACGA+AGG + chr5_3:23575739-23575758 Msa0806120:three_prime_UTR 50.0%
GAAGTTGTGCCTACACGAAG+GGG + chr5_3:23575741-23575760 Msa0806120:three_prime_UTR 50.0%
AGGTAGAATCCCCTTCGTGT+AGG - chr5_3:23575753-23575772 None:intergenic 50.0%
GGTTTCCTAACCAGTCAGGT+AGG - chr5_3:23574863-23574882 None:intergenic 50.0%
CCTAGGTTTCCTAACCAGTC+AGG - chr5_3:23574867-23574886 None:intergenic 50.0%
! CCTGACTGGTTAGGAAACCT+AGG + chr5_3:23574864-23574883 Msa0806120:intron 50.0%
! GGCATTGAATGCTCATGGGA+AGG - chr5_3:23574935-23574954 None:intergenic 50.0%
AAGTGCACTCGTCATTGGAC+AGG - chr5_3:23575335-23575354 None:intergenic 50.0%
TGTCCAATGACGAGTGCACT+TGG + chr5_3:23575334-23575353 Msa0806120:intron 50.0%
TCACCAAGTGCACTCGTCAT+TGG - chr5_3:23575340-23575359 None:intergenic 50.0%
CTCTTGCTTCCGATAACAGC+AGG - chr5_3:23575441-23575460 None:intergenic 50.0%
CTGCTGTTATCGGAAGCAAG+AGG + chr5_3:23575439-23575458 Msa0806120:intron 50.0%
CTTCGTGTAGGCACAACTTC+AGG - chr5_3:23575741-23575760 None:intergenic 50.0%
CTGAAGTTGTGCCTACACGA+AGG + chr5_3:23575739-23575758 Msa0806120:three_prime_UTR 50.0%
GAAGTTGTGCCTACACGAAG+GGG + chr5_3:23575741-23575760 Msa0806120:three_prime_UTR 50.0%
AGGTAGAATCCCCTTCGTGT+AGG - chr5_3:23575753-23575772 None:intergenic 50.0%
TTTCGGCTGGGAGTTGCTCA+AGG - chr5_3:23574566-23574585 None:intergenic 55.0%
TCAGGTAGGGATGCCAGGTT+TGG - chr5_3:23574849-23574868 None:intergenic 55.0%
! GCATCCCTACCTGACTGGTT+AGG + chr5_3:23574855-23574874 Msa0806120:intron 55.0%
! ATGGGAAGGCACGTCAGCTT+TGG - chr5_3:23574921-23574940 None:intergenic 55.0%
ATGGCAATGGCCTACGTAGG+AGG + chr5_3:23575077-23575096 Msa0806120:CDS 55.0%
ATGGCCTACGTAGGAGGAAG+AGG + chr5_3:23575083-23575102 Msa0806120:CDS 55.0%
AGTTCTGCATCTGCAGCCAC+AGG - chr5_3:23575693-23575712 None:intergenic 55.0%
TTTCGGCTGGGAGTTGCTCA+AGG - chr5_3:23574566-23574585 None:intergenic 55.0%
TCAGGTAGGGATGCCAGGTT+TGG - chr5_3:23574849-23574868 None:intergenic 55.0%
! GCATCCCTACCTGACTGGTT+AGG + chr5_3:23574855-23574874 Msa0806120:intron 55.0%
! ATGGGAAGGCACGTCAGCTT+TGG - chr5_3:23574921-23574940 None:intergenic 55.0%
ATGGCAATGGCCTACGTAGG+AGG + chr5_3:23575077-23575096 Msa0806120:CDS 55.0%
ATGGCCTACGTAGGAGGAAG+AGG + chr5_3:23575083-23575102 Msa0806120:CDS 55.0%
AGTTCTGCATCTGCAGCCAC+AGG - chr5_3:23575693-23575712 None:intergenic 55.0%
GGCTGGGAGTTGCTCAAGGT+TGG - chr5_3:23574562-23574581 None:intergenic 60.0%
ACCTGGCATCCCTACCTGAC+TGG + chr5_3:23574850-23574869 Msa0806120:CDS 60.0%
ACCAGTCAGGTAGGGATGCC+AGG - chr5_3:23574854-23574873 None:intergenic 60.0%
GGCTGGGAGTTGCTCAAGGT+TGG - chr5_3:23574562-23574581 None:intergenic 60.0%
ACCTGGCATCCCTACCTGAC+TGG + chr5_3:23574850-23574869 Msa0806120:CDS 60.0%
ACCAGTCAGGTAGGGATGCC+AGG - chr5_3:23574854-23574873 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 23574510 23575959 23574510 ID=Msa0806120;Name=Msa0806120
chr5_3 mRNA 23574510 23575959 23574510 ID=Msa0806120-mRNA-1;Parent=Msa0806120;Name=Msa0806120-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0|0|0.33|1|1|1|3|231|166
chr5_3 exon 23574510 23574871 23574510 ID=Msa0806120-mRNA-1:exon:9257;Parent=Msa0806120-mRNA-1
chr5_3 exon 23574992 23575104 23574992 ID=Msa0806120-mRNA-1:exon:9258;Parent=Msa0806120-mRNA-1
chr5_3 exon 23575703 23575959 23575703 ID=Msa0806120-mRNA-1:exon:9259;Parent=Msa0806120-mRNA-1
chr5_3 CDS 23574510 23574871 23574510 ID=Msa0806120-mRNA-1:cds;Parent=Msa0806120-mRNA-1
chr5_3 CDS 23574992 23575104 23574992 ID=Msa0806120-mRNA-1:cds;Parent=Msa0806120-mRNA-1
chr5_3 CDS 23575703 23575728 23575703 ID=Msa0806120-mRNA-1:cds;Parent=Msa0806120-mRNA-1
chr5_3 three_prime_UTR 23575729 23575959 23575729 ID=Msa0806120-mRNA-1:three_prime_utr;Parent=Msa0806120-mRNA-1
Gene Sequence

>Msa0806120

ATGCTACGAAACCTTACTTCCCTAAAGGTTTTTGACATTTGTGAGCTTTCCAACCTTGAGCAACTCCCAGCCGAAATCAGTAACCTTACTGTTATCCAAGAAATAATGATCACAAATTGCAAGAACCTCAAGTCATTGACAGATGAAGTATTACAAGGGTTGCACTCTCTTAAGATATTGAATATTGCGGGGTGCAAAAAGTTCAATCTGTCAGAAAGTTTTAAATATCTCACTTGTCTTGAGAAATTGATGATCCAAAATTCTTCAGAAATAGAAGGTTTTCATGAGGGTTTACAACATATGACTGCTCTTAAATCTTTGATATTGAGTCATCTTCCAAACCTGGCATCCCTACCTGACTGTGAGTTAGGGGAACGATGTAAAGAGAACACAGGTGAGGATTGGCCAAAAATAACTCACATTCAATACATTGATGTACAAAACAAAATGGCAATGGCCTACGTAGGAGGAAGAGATGCAGAACTTCTCAATGCTGTTTGA
Protein sequence

>Msa0806120

MLRNLTSLKVFDICELSNLEQLPAEISNLTVIQEIMITNCKNLKSLTDEVLQGLHSLKILNIAGCKKFNLSESFKYLTCLEKLMIQNSSEIEGFHEGLQHMTALKSLILSHLPNLASLPDCELGERCKENTGEDWPKITHIQYIDVQNKMAMAYVGGRDAELLNAV*