AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1254710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1254710 MtrunA17_Chr8g0372081 97.541 122 3 0 1 122 1 122 1.35e-85 244
Msa1254710 MtrunA17_Chr3g0091791 33.945 109 56 2 10 118 45 137 8.57e-12 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1254710 AT2G18040.1 76.991 113 26 0 9 121 6 118 1.14e-62 187
Msa1254710 AT1G26550.1 33.945 109 56 2 10 118 43 135 1.37e-12 60.8

Find 43 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAACAGGATATCCTTTC+TGG 0.178824 8_2:-52842429 Msa1254710:CDS
GGACCGACATCGAGGTTATC+TGG 0.263250 8_2:+52842762 None:intergenic
ATGCTACAGTTCACTCTAAA+AGG 0.268343 8_2:+52840326 None:intergenic
TTCTTGGCTGTAGGTCCTTT+TGG 0.284324 8_2:-52840484 Msa1254710:intron
CGAAGCAAGATCCTCAAATT+TGG 0.289474 8_2:+52842401 None:intergenic
TTCTTGATGACGTAACCTTC+TGG 0.327996 8_2:+52842489 None:intergenic
CTTCAAAAGGCTTCTGCATC+TGG 0.328903 8_2:+52840455 None:intergenic
TATTCTTACTTCAATGAAAC+AGG 0.360330 8_2:-52842442 Msa1254710:CDS
CAAGGTAACGTGTTCATAAT+TGG 0.360947 8_2:+52840088 None:intergenic
GTATTTAGCAATTTATAGAT+TGG 0.365039 8_2:+52842741 None:intergenic
GCTAAACGCGGTGGCGATCT+TGG 0.368998 8_2:-52842357 Msa1254710:intron
AATTTGTTCTCTTGATTATG+TGG 0.388827 8_2:+52840371 None:intergenic
TCGCGGCGGCGCTGAGGTTA+GGG 0.411373 8_2:-52842568 Msa1254710:CDS
TTCTGGTAAGGCCAAATTTG+AGG 0.428366 8_2:-52842412 Msa1254710:CDS
CAAATTTGGCCTTACCAGAA+AGG 0.448271 8_2:+52842415 None:intergenic
GCATAAGTTGCATCTTCAAA+AGG 0.464113 8_2:+52840442 None:intergenic
TGCATCTGGCCACGACCAAA+AGG 0.471277 8_2:+52840469 None:intergenic
ATATATTGATAATTTAATCA+TGG 0.484510 8_2:-52840259 Msa1254710:three_prime_UTR
GCAACTTATGCTCTTCAAGT+TGG 0.495197 8_2:-52840430 Msa1254710:CDS
ATCAATTTCGTCGGCGACGG+CGG 0.499635 8_2:-52842640 Msa1254710:five_prime_UTR
GACCGACATCGAGGTTATCT+GGG 0.500421 8_2:+52842763 None:intergenic
ATTTGTTCTCTTGATTATGT+GGG 0.511033 8_2:+52840372 None:intergenic
ACAGGATATCCTTTCTGGTA+AGG 0.524366 8_2:-52842424 Msa1254710:CDS
AGTTAACTCGCGAATCTGCT+TGG 0.527232 8_2:+52842719 None:intergenic
AACATCAATTTCGTCGGCGA+CGG 0.538566 8_2:-52842643 Msa1254710:five_prime_UTR
AATTTGAGGATCTTGCTTCG+AGG 0.550226 8_2:-52842398 Msa1254710:CDS
GTTCTAGAAGAAAAGCTTCG+TGG 0.556909 8_2:-52842518 Msa1254710:CDS
TGCAAATGTCATAGGTAACA+AGG 0.584283 8_2:+52840070 None:intergenic
TGGTGAAATTAGTGACATTG+TGG 0.589271 8_2:-52840410 Msa1254710:CDS
CATTGAAGTAAGAATAGCAA+CGG 0.597353 8_2:+52842449 None:intergenic
AAAGAAAACATCAATTTCGT+CGG 0.601646 8_2:-52842649 Msa1254710:five_prime_UTR
TGAGTTTCATTACACAGTGA+CGG 0.609834 8_2:-52842697 Msa1254710:five_prime_UTR
GTAGTGATAGAATTCACGAC+AGG 0.641471 8_2:+52840110 None:intergenic
GCGAAAATGTCTTCATCTCG+CGG 0.645162 8_2:-52842585 Msa1254710:exon
AGAACAAATTGATTATTACA+CGG 0.651834 8_2:-52840358 Msa1254710:exon
CACATACTGATTAAACACGA+AGG 0.672969 8_2:-52842540 Msa1254710:CDS
GACCCAGATAACCTCGATGT+CGG 0.673083 8_2:-52842765 Msa1254710:five_prime_UTR
GACATTGTGGATAGTGACAG+TGG 0.676092 8_2:-52840397 Msa1254710:CDS
TGTAGCTCTGCTAAACGCGG+TGG 0.678782 8_2:-52842366 Msa1254710:CDS
GATTGTAGCTCTGCTAAACG+CGG 0.692633 8_2:-52842369 Msa1254710:CDS
GCTTCGTGGAAAGATCCAGA+AGG 0.706542 8_2:-52842504 Msa1254710:CDS
TATAGATTGGACCGACATCG+AGG 0.714981 8_2:+52842754 None:intergenic
AAAATGTCTTCATCTCGCGG+CGG 0.772656 8_2:-52842582 Msa1254710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTGATTAAAATTCAAAAT+GGG + chr8_2:52842198-52842217 None:intergenic 10.0%
!!! ATATATTGATAATTTAATCA+TGG - chr8_2:52842591-52842610 Msa1254710:exon 10.0%
!! ATATGAAAAAATGAATTAGT+TGG - chr8_2:52840759-52840778 Msa1254710:intron 15.0%
!! AAAGTAACAAAAAAACTTAA+GGG + chr8_2:52841682-52841701 None:intergenic 15.0%
!!! GTATTGATTAAAATTCAAAA+TGG + chr8_2:52842199-52842218 None:intergenic 15.0%
!!! TTTGAATTTTAATCAATACA+AGG - chr8_2:52842200-52842219 Msa1254710:intron 15.0%
!!! TTGAATTTTAATCAATACAA+GGG - chr8_2:52842201-52842220 Msa1254710:intron 15.0%
!!! TAATTTTGAAAAACATTCAT+GGG - chr8_2:52842682-52842701 Msa1254710:five_prime_UTR 15.0%
!! GTATTTAGCAATTTATAGAT+TGG + chr8_2:52840112-52840131 None:intergenic 20.0%
!!! TTACTTTCTAGTAAATTACA+AGG + chr8_2:52841445-52841464 None:intergenic 20.0%
!! TGTAATTTACTAGAAAGTAA+TGG - chr8_2:52841445-52841464 Msa1254710:intron 20.0%
!! AATTTCTTGTCAAAGTAATT+TGG - chr8_2:52841588-52841607 Msa1254710:intron 20.0%
!! GAAAGTAACAAAAAAACTTA+AGG + chr8_2:52841683-52841702 None:intergenic 20.0%
!!! TTTTTTCAGTTGAACTAAAA+TGG - chr8_2:52842338-52842357 Msa1254710:intron 20.0%
!! AGAACAAATTGATTATTACA+CGG - chr8_2:52842492-52842511 Msa1254710:CDS 20.0%
!!! GTAATTTTGAAAAACATTCA+TGG - chr8_2:52842681-52842700 Msa1254710:five_prime_UTR 20.0%
!!! AATTTTGAAAAACATTCATG+GGG - chr8_2:52842683-52842702 Msa1254710:five_prime_UTR 20.0%
! AAAGAAAACATCAATTTCGT+CGG - chr8_2:52840201-52840220 Msa1254710:three_prime_UTR 25.0%
! TATTCTTACTTCAATGAAAC+AGG - chr8_2:52840408-52840427 Msa1254710:CDS 25.0%
!!! TGTTTTTGAATTGGATTATG+AGG - chr8_2:52840556-52840575 Msa1254710:intron 25.0%
!! GTTTTTGAATTGGATTATGA+GGG - chr8_2:52840557-52840576 Msa1254710:intron 25.0%
!! AGTTATTGTGTTACTGTTAT+TGG - chr8_2:52840618-52840637 Msa1254710:intron 25.0%
! ATTGAAATTAGTAGAAACTG+TGG - chr8_2:52840686-52840705 Msa1254710:intron 25.0%
! TTGAAATTAGTAGAAACTGT+GGG - chr8_2:52840687-52840706 Msa1254710:intron 25.0%
! GATAAGAGTTTATATAGAAG+AGG + chr8_2:52841146-52841165 None:intergenic 25.0%
! TTTACTAGAAAGTAATGGTT+TGG - chr8_2:52841450-52841469 Msa1254710:intron 25.0%
! ACAAGATTATGATTGTCATA+TGG - chr8_2:52841501-52841520 Msa1254710:intron 25.0%
! TTGTCATATGGATCTTAATT+TGG - chr8_2:52841513-52841532 Msa1254710:intron 25.0%
!!! AAATTTGTAAGTTGGTTGAT+AGG + chr8_2:52841573-52841592 None:intergenic 25.0%
! TTGACAAGAAATTTGTAAGT+TGG + chr8_2:52841581-52841600 None:intergenic 25.0%
! AGAACTAGAATGTAATGTTT+AGG + chr8_2:52841740-52841759 None:intergenic 25.0%
! GGTTATGTAAAATGAATTCA+AGG + chr8_2:52842075-52842094 None:intergenic 25.0%
!! ATGTTACTAGCATTTCTTTT+AGG + chr8_2:52842100-52842119 None:intergenic 25.0%
! CTCAACTAAATATCAATCAT+TGG + chr8_2:52842154-52842173 None:intergenic 25.0%
! AAATGGGTCTCAAATAAATT+TGG + chr8_2:52842182-52842201 None:intergenic 25.0%
! ATTTGTTCTCTTGATTATGT+GGG + chr8_2:52842481-52842500 None:intergenic 25.0%
!! AATTTGTTCTCTTGATTATG+TGG + chr8_2:52842482-52842501 None:intergenic 25.0%
! TGTTTTCTTTCTCTTACGAT+CGG + chr8_2:52840191-52840210 None:intergenic 30.0%
CATTGAAGTAAGAATAGCAA+CGG + chr8_2:52840404-52840423 None:intergenic 30.0%
! TATTGTGTTACTGTTATTGG+TGG - chr8_2:52840621-52840640 Msa1254710:intron 30.0%
TGTTGAAATAGAAGCTAAAG+TGG - chr8_2:52840817-52840836 Msa1254710:intron 30.0%
TCTGATACCATGTTGAAATT+TGG - chr8_2:52841076-52841095 Msa1254710:intron 30.0%
CTGATACCATGTTGAAATTT+GGG - chr8_2:52841077-52841096 Msa1254710:intron 30.0%
TGATACCATGTTGAAATTTG+GGG - chr8_2:52841078-52841097 Msa1254710:intron 30.0%
!! ATTGGTTTGGTTGTTATTTG+AGG - chr8_2:52841398-52841417 Msa1254710:intron 30.0%
!! TTGGTTTGGTTGTTATTTGA+GGG - chr8_2:52841399-52841418 Msa1254710:intron 30.0%
TATTCTGCCTAAGAAAGAAT+AGG - chr8_2:52841477-52841496 Msa1254710:intron 30.0%
TCTTGTACCTATTCTTTCTT+AGG + chr8_2:52841487-52841506 None:intergenic 30.0%
TAATTTGGTTGTAGTTGTGA+TGG - chr8_2:52841528-52841547 Msa1254710:intron 30.0%
!! TTTTGAACAATTTTAGCCCT+AGG - chr8_2:52841623-52841642 Msa1254710:intron 30.0%
!! TTTGAACAATTTTAGCCCTA+GGG - chr8_2:52841624-52841643 Msa1254710:intron 30.0%
!! TGTTGTGATGGAATTTTTGT+TGG - chr8_2:52841848-52841867 Msa1254710:intron 30.0%
TTAGGCAAATACAACATTGT+TGG - chr8_2:52841914-52841933 Msa1254710:intron 30.0%
!! TACTAGCATTTCTTTTAGGA+GGG + chr8_2:52842096-52842115 None:intergenic 30.0%
! TTACTAGCATTTCTTTTAGG+AGG + chr8_2:52842097-52842116 None:intergenic 30.0%
GTTGAAAATAATATGCTGAG+TGG + chr8_2:52842123-52842142 None:intergenic 30.0%
!! ATCAATCCTTTAGGATTAGA+GGG + chr8_2:52842268-52842287 None:intergenic 30.0%
!! AATCAATCCTTTAGGATTAG+AGG + chr8_2:52842269-52842288 None:intergenic 30.0%
GAATGTGTAATCAATCCTTT+AGG + chr8_2:52842277-52842296 None:intergenic 30.0%
! AACTAAAATGGTCACTTTCT+TGG - chr8_2:52842350-52842369 Msa1254710:intron 30.0%
CGTATCATCAAAAAAACACA+TGG + chr8_2:52842622-52842641 None:intergenic 30.0%
!!! GTGTTTTTTTGATGATACGT+TGG - chr8_2:52842623-52842642 Msa1254710:five_prime_UTR 30.0%
! ACTTCGTACTCTATTGTTTT+TGG - chr8_2:52842711-52842730 Msa1254710:five_prime_UTR 30.0%
TGAGTTTCATTACACAGTGA+CGG - chr8_2:52840153-52840172 Msa1254710:three_prime_UTR 35.0%
! CACATACTGATTAAACACGA+AGG - chr8_2:52840310-52840329 Msa1254710:three_prime_UTR 35.0%
ATGAAACAGGATATCCTTTC+TGG - chr8_2:52840421-52840440 Msa1254710:CDS 35.0%
!! GTGTGAGTGTGTTTTTGAAT+TGG - chr8_2:52840547-52840566 Msa1254710:intron 35.0%
! AGGGAATTTTGTTAACCCTA+GGG - chr8_2:52840576-52840595 Msa1254710:intron 35.0%
AAACTCATTCAACTACCCTA+GGG + chr8_2:52840594-52840613 None:intergenic 35.0%
TAAACTCATTCAACTACCCT+AGG + chr8_2:52840595-52840614 None:intergenic 35.0%
TGAAATAGAAGCTAAAGTGG+TGG - chr8_2:52840820-52840839 Msa1254710:intron 35.0%
CTAACTCATCCTTACAAAAC+CGG - chr8_2:52841102-52841121 Msa1254710:intron 35.0%
TGACATTATACCACTTAGGT+TGG + chr8_2:52841251-52841270 None:intergenic 35.0%
ATAATGTCACCACTATTGTC+AGG - chr8_2:52841262-52841281 Msa1254710:intron 35.0%
TGCAAAATGTTGTCACATTG+TGG - chr8_2:52841300-52841319 Msa1254710:intron 35.0%
ATCGCGTAAAATAGCAATCT+GGG + chr8_2:52841364-52841383 None:intergenic 35.0%
!! TTGAACAATTTTAGCCCTAG+GGG - chr8_2:52841625-52841644 Msa1254710:intron 35.0%
CTTAAGAAACATTACGGGAA+AGG + chr8_2:52841656-52841675 None:intergenic 35.0%
GGATGCTTAAGAAACATTAC+GGG + chr8_2:52841661-52841680 None:intergenic 35.0%
GGGATGCTTAAGAAACATTA+CGG + chr8_2:52841662-52841681 None:intergenic 35.0%
! TAGTTCTATCCTTCTACCAA+GGG - chr8_2:52841753-52841772 Msa1254710:intron 35.0%
GTGAATTATTTAGCTACCCT+TGG + chr8_2:52841772-52841791 None:intergenic 35.0%
GACTGAACAATATGTTGTGA+TGG - chr8_2:52841836-52841855 Msa1254710:intron 35.0%
!! TGTAAGCTAGCATTAGCTTT+AGG - chr8_2:52841896-52841915 Msa1254710:intron 35.0%
TGAAAGATCAGCTGTATTGA+TGG + chr8_2:52841971-52841990 None:intergenic 35.0%
GAATTCAAGGTACACCATAT+CGG + chr8_2:52842062-52842081 None:intergenic 35.0%
GGGTCTCAAATAAATTTGGT+GGG + chr8_2:52842178-52842197 None:intergenic 35.0%
TGGGTCTCAAATAAATTTGG+TGG + chr8_2:52842179-52842198 None:intergenic 35.0%
!! TCAATCCTTTAGGATTAGAG+GGG + chr8_2:52842267-52842286 None:intergenic 35.0%
GCATAAGTTGCATCTTCAAA+AGG + chr8_2:52842411-52842430 None:intergenic 35.0%
TGGTGAAATTAGTGACATTG+TGG - chr8_2:52842440-52842459 Msa1254710:CDS 35.0%
ATGCTACAGTTCACTCTAAA+AGG + chr8_2:52842527-52842546 None:intergenic 35.0%
CAAGGTAACGTGTTCATAAT+TGG + chr8_2:52842765-52842784 None:intergenic 35.0%
!! GTTCTAGAAGAAAAGCTTCG+TGG - chr8_2:52840332-52840351 Msa1254710:three_prime_UTR 40.0%
!! TTCTTGATGACGTAACCTTC+TGG + chr8_2:52840364-52840383 None:intergenic 40.0%
! ACAGGATATCCTTTCTGGTA+AGG - chr8_2:52840426-52840445 Msa1254710:CDS 40.0%
!! CAAATTTGGCCTTACCAGAA+AGG + chr8_2:52840438-52840457 None:intergenic 40.0%
TTCTGGTAAGGCCAAATTTG+AGG - chr8_2:52840438-52840457 Msa1254710:CDS 40.0%
CGAAGCAAGATCCTCAAATT+TGG + chr8_2:52840452-52840471 None:intergenic 40.0%
AATTTGAGGATCTTGCTTCG+AGG - chr8_2:52840452-52840471 Msa1254710:CDS 40.0%
! GAGGGAATTTTGTTAACCCT+AGG - chr8_2:52840575-52840594 Msa1254710:intron 40.0%
! TTAGTAGAAACTGTGGGCTA+AGG - chr8_2:52840693-52840712 Msa1254710:intron 40.0%
ACGTAATCACATGTGTCAGA+GGG - chr8_2:52840782-52840801 Msa1254710:intron 40.0%
GAAGCTAAAGTGGTGGTATA+AGG - chr8_2:52840827-52840846 Msa1254710:intron 40.0%
!! ATCGGAGGGGTGTTTAAATT+TGG - chr8_2:52840872-52840891 Msa1254710:intron 40.0%
!! TCGGAGGGGTGTTTAAATTT+GGG - chr8_2:52840873-52840892 Msa1254710:intron 40.0%
CTAACTCATCCTTACCAAAC+CGG - chr8_2:52840898-52840917 Msa1254710:intron 40.0%
! AGAGTCTTATCTATCCGATG+TGG - chr8_2:52840963-52840982 Msa1254710:intron 40.0%
! GAGTCTTATCTATCCGATGT+GGG - chr8_2:52840964-52840983 Msa1254710:intron 40.0%
AAAAAACCCAAGTCCCACAT+CGG + chr8_2:52840980-52840999 None:intergenic 40.0%
TCAGAGCTTGTCGAATTCAA+GGG + chr8_2:52841061-52841080 None:intergenic 40.0%
ATCAGAGCTTGTCGAATTCA+AGG + chr8_2:52841062-52841081 None:intergenic 40.0%
TTAGGCCCCAAATTTCAACA+TGG + chr8_2:52841086-52841105 None:intergenic 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG + chr8_2:52841104-52841123 None:intergenic 40.0%
! AGAGTCTTATCTATCCGATG+TGG - chr8_2:52840963-52840982 Msa1254710:intron 40.0%
! GAGTCTTATCTATCCGATGT+GGG - chr8_2:52840964-52840983 Msa1254710:intron 40.0%
!! TGGCTTGATGGTATTGACTT+GGG + chr8_2:52841231-52841250 None:intergenic 40.0%
!! TTGGCTTGATGGTATTGACT+TGG + chr8_2:52841232-52841251 None:intergenic 40.0%
GTGGTGACATTATACCACTT+AGG + chr8_2:52841255-52841274 None:intergenic 40.0%
ATTGCATCACCTGACAATAG+TGG + chr8_2:52841274-52841293 None:intergenic 40.0%
GATCGCGTAAAATAGCAATC+TGG + chr8_2:52841365-52841384 None:intergenic 40.0%
! CAAACCAATATTGTCGACTG+TGG + chr8_2:52841387-52841406 None:intergenic 40.0%
! CACAGTCGACAATATTGGTT+TGG - chr8_2:52841385-52841404 Msa1254710:intron 40.0%
!! TTGAGGGATTCGTTTTTGCT+TGG - chr8_2:52841415-52841434 Msa1254710:intron 40.0%
!! CTAGTTCTATCCTTCTACCA+AGG - chr8_2:52841752-52841771 Msa1254710:intron 40.0%
ATTTAGCTACCCTTGGTAGA+AGG + chr8_2:52841765-52841784 None:intergenic 40.0%
TTTGCGCGAAACTGAAAATG+TGG - chr8_2:52841992-52842011 Msa1254710:intron 40.0%
TAATTCCTAGACCTCCGATA+TGG - chr8_2:52842045-52842064 Msa1254710:intron 40.0%
GCAACTTATGCTCTTCAAGT+TGG - chr8_2:52842420-52842439 Msa1254710:CDS 40.0%
!!! CGTACTCTATTGTTTTTGGC+AGG - chr8_2:52842715-52842734 Msa1254710:five_prime_UTR 40.0%
GTAGTGATAGAATTCACGAC+AGG + chr8_2:52842743-52842762 None:intergenic 40.0%
TATAGATTGGACCGACATCG+AGG + chr8_2:52840099-52840118 None:intergenic 45.0%
AGTTAACTCGCGAATCTGCT+TGG + chr8_2:52840134-52840153 None:intergenic 45.0%
AACATCAATTTCGTCGGCGA+CGG - chr8_2:52840207-52840226 Msa1254710:three_prime_UTR 45.0%
GCGAAAATGTCTTCATCTCG+CGG - chr8_2:52840265-52840284 Msa1254710:three_prime_UTR 45.0%
AAAATGTCTTCATCTCGCGG+CGG - chr8_2:52840268-52840287 Msa1254710:three_prime_UTR 45.0%
! GATTGTAGCTCTGCTAAACG+CGG - chr8_2:52840481-52840500 Msa1254710:intron 45.0%
GACGTAATCACATGTGTCAG+AGG - chr8_2:52840781-52840800 Msa1254710:intron 45.0%
CAGCCCACCTAAATTGACAT+CGG - chr8_2:52840854-52840873 Msa1254710:intron 45.0%
CCTCCGATGTCAATTTAGGT+GGG + chr8_2:52840860-52840879 None:intergenic 45.0%
CCACCTAAATTGACATCGGA+GGG - chr8_2:52840858-52840877 Msa1254710:intron 45.0%
CACCTAAATTGACATCGGAG+GGG - chr8_2:52840859-52840878 Msa1254710:intron 45.0%
!! CGGAGGGGTGTTTAAATTTG+GGG - chr8_2:52840874-52840893 Msa1254710:intron 45.0%
!! CGGTTTGGTAAGGATGAGTT+AGG + chr8_2:52840900-52840919 None:intergenic 45.0%
ACAATCCTCACCTTACAAGC+CGG + chr8_2:52840920-52840939 None:intergenic 45.0%
TATCTATCCGATGTGGGACT+TGG - chr8_2:52840970-52840989 Msa1254710:intron 45.0%
ATCTATCCGATGTGGGACTT+GGG - chr8_2:52840971-52840990 Msa1254710:intron 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG + chr8_2:52841114-52841133 None:intergenic 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG - chr8_2:52841111-52841130 Msa1254710:intron 45.0%
TATCTATCCGATGTGGGACT+TGG - chr8_2:52840970-52840989 Msa1254710:intron 45.0%
ATCTATCCGATGTGGGACTT+GGG - chr8_2:52840971-52840990 Msa1254710:intron 45.0%
GAAAAACCCAAGTCCCACAT+CGG + chr8_2:52841184-52841203 None:intergenic 45.0%
!! ATGGTATTGACTTGGGACCT+GGG + chr8_2:52841224-52841243 None:intergenic 45.0%
TACCATCAAGCCAACCTAAG+TGG - chr8_2:52841238-52841257 Msa1254710:intron 45.0%
!! TACCACTTAGGTTGGCTTGA+TGG + chr8_2:52841243-52841262 None:intergenic 45.0%
TTGTCACATTGTGGCTGTAG+TGG - chr8_2:52841309-52841328 Msa1254710:intron 45.0%
CGATCCACAGTCGACAATAT+TGG - chr8_2:52841380-52841399 Msa1254710:intron 45.0%
TGGACTTCTTGATGTTGCTG+TGG - chr8_2:52841868-52841887 Msa1254710:intron 45.0%
TTCAAGGTACACCATATCGG+AGG + chr8_2:52842059-52842078 None:intergenic 45.0%
TAGCACCCCTCTAATCCTAA+AGG - chr8_2:52842259-52842278 Msa1254710:intron 45.0%
! ATGGTCACTTTCTTGGCTGT+AGG - chr8_2:52842357-52842376 Msa1254710:intron 45.0%
! TTCTTGGCTGTAGGTCCTTT+TGG - chr8_2:52842366-52842385 Msa1254710:CDS 45.0%
CTTCAAAAGGCTTCTGCATC+TGG + chr8_2:52842398-52842417 None:intergenic 45.0%
GACATTGTGGATAGTGACAG+TGG - chr8_2:52842453-52842472 Msa1254710:CDS 45.0%
GACCCAGATAACCTCGATGT+CGG - chr8_2:52840085-52840104 Msa1254710:three_prime_UTR 50.0%
GACCGACATCGAGGTTATCT+GGG + chr8_2:52840090-52840109 None:intergenic 50.0%
GCTTCGTGGAAAGATCCAGA+AGG - chr8_2:52840346-52840365 Msa1254710:three_prime_UTR 50.0%
CGATGTCAATTTAGGTGGGC+TGG + chr8_2:52840856-52840875 None:intergenic 50.0%
CCCACCTAAATTGACATCGG+AGG - chr8_2:52840857-52840876 Msa1254710:intron 50.0%
CCCTCCGATGTCAATTTAGG+TGG + chr8_2:52840861-52840880 None:intergenic 50.0%
CACCCCTCCGATGTCAATTT+AGG + chr8_2:52840864-52840883 None:intergenic 50.0%
!! CCTTACAAGCCGGTTTGGTA+AGG + chr8_2:52840910-52840929 None:intergenic 50.0%
!! CCTTACCAAACCGGCTTGTA+AGG - chr8_2:52840907-52840926 Msa1254710:intron 50.0%
!! TTTGGGCTTGGTGCGTGAAT+CGG - chr8_2:52841028-52841047 Msa1254710:intron 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG - chr8_2:52841116-52841135 Msa1254710:intron 50.0%
GCAATCCTCACCTTACAAGC+CGG + chr8_2:52841124-52841143 None:intergenic 50.0%
! TGGGACTTGGGTTTTTCTCG+AGG - chr8_2:52841187-52841206 Msa1254710:intron 50.0%
! GACTTGGGTTTTTCTCGAGG+AGG - chr8_2:52841190-52841209 Msa1254710:intron 50.0%
!! GATGGTATTGACTTGGGACC+TGG + chr8_2:52841225-52841244 None:intergenic 50.0%
GTACACCATATCGGAGGTCT+AGG + chr8_2:52842053-52842072 None:intergenic 50.0%
GGACCGACATCGAGGTTATC+TGG + chr8_2:52840091-52840110 None:intergenic 55.0%
ATCAATTTCGTCGGCGACGG+CGG - chr8_2:52840210-52840229 Msa1254710:three_prime_UTR 55.0%
! TGTAGCTCTGCTAAACGCGG+TGG - chr8_2:52840484-52840503 Msa1254710:intron 55.0%
CCTCACCTTACAAGCCGGTT+TGG + chr8_2:52840915-52840934 None:intergenic 55.0%
!! CCAAACCGGCTTGTAAGGTG+AGG - chr8_2:52840912-52840931 Msa1254710:intron 55.0%
!! AAAGAGTGCTGGAGTGACGG+GGG + chr8_2:52841011-52841030 None:intergenic 55.0%
!! CAAAGAGTGCTGGAGTGACG+GGG + chr8_2:52841012-52841031 None:intergenic 55.0%
!! CCAAAGAGTGCTGGAGTGAC+GGG + chr8_2:52841013-52841032 None:intergenic 55.0%
!! CCCAAAGAGTGCTGGAGTGA+CGG + chr8_2:52841014-52841033 None:intergenic 55.0%
CCGTCACTCCAGCACTCTTT+GGG - chr8_2:52841011-52841030 Msa1254710:intron 55.0%
ACTCCAGCACTCTTTGGGCT+TGG - chr8_2:52841016-52841035 Msa1254710:intron 55.0%
TTGGTGCGTGAATCGGTAGG+TGG - chr8_2:52841035-52841054 Msa1254710:intron 55.0%
! GCTGTAGGTCCTTTTGGTCG+TGG - chr8_2:52842372-52842391 Msa1254710:CDS 55.0%
TGCATCTGGCCACGACCAAA+AGG + chr8_2:52842384-52842403 None:intergenic 55.0%
GCTAAACGCGGTGGCGATCT+TGG - chr8_2:52840493-52840512 Msa1254710:intron 60.0%
! CTGGAGTGACGGGGGTGTAT+TGG + chr8_2:52841003-52841022 None:intergenic 60.0%
CCCGTCACTCCAGCACTCTT+TGG - chr8_2:52841010-52841029 Msa1254710:intron 60.0%
! GCACCAAGCCCAAAGAGTGC+TGG + chr8_2:52841022-52841041 None:intergenic 60.0%
!! GGCTTGGTGCGTGAATCGGT+AGG - chr8_2:52841032-52841051 Msa1254710:intron 60.0%
TCGAGGAGGAGCAAACTCCC+AGG - chr8_2:52841204-52841223 Msa1254710:intron 60.0%
CGGGAAAGGCAGCACCCCTA+GGG + chr8_2:52841642-52841661 None:intergenic 65.0%
ACGGGAAAGGCAGCACCCCT+AGG + chr8_2:52841643-52841662 None:intergenic 65.0%
TTCATCTCGCGGCGGCGCTG+AGG - chr8_2:52840276-52840295 Msa1254710:three_prime_UTR 70.0%
! TCGCGGCGGCGCTGAGGTTA+GGG - chr8_2:52840282-52840301 Msa1254710:three_prime_UTR 70.0%
! CTCGCGGCGGCGCTGAGGTT+AGG - chr8_2:52840281-52840300 Msa1254710:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 52840081 52842791 52840081 ID=Msa1254710;Name=Msa1254710
chr8_2 mRNA 52840081 52842791 52840081 ID=Msa1254710-mRNA-1;Parent=Msa1254710;Name=Msa1254710-mRNA-1;_AED=0.00;_eAED=0.00;_QI=190|1|1|1|1|0.5|2|288|122
chr8_2 exon 52840081 52840493 52840081 ID=Msa1254710-mRNA-1:exon:16287;Parent=Msa1254710-mRNA-1
chr8_2 exon 52842358 52842791 52842358 ID=Msa1254710-mRNA-1:exon:16286;Parent=Msa1254710-mRNA-1
chr8_2 five_prime_UTR 52842602 52842791 52842602 ID=Msa1254710-mRNA-1:five_prime_utr;Parent=Msa1254710-mRNA-1
chr8_2 CDS 52842358 52842601 52842358 ID=Msa1254710-mRNA-1:cds;Parent=Msa1254710-mRNA-1
chr8_2 CDS 52840369 52840493 52840369 ID=Msa1254710-mRNA-1:cds;Parent=Msa1254710-mRNA-1
chr8_2 three_prime_UTR 52840081 52840368 52840081 ID=Msa1254710-mRNA-1:three_prime_utr;Parent=Msa1254710-mRNA-1
Gene Sequence

>Msa1254710

ATGTCTTCATCTCGCGGCGGCGCTGAGGTTAGGGCTTCACACATACTGATTAAACACGAAGGTTCTAGAAGAAAAGCTTCGTGGAAAGATCCAGAAGGTTACGTCATCAAGAACACTACTCGTGAAAGTGCCGTTGCTATTCTTACTTCAATGAAACAGGATATCCTTTCTGGTAAGGCCAAATTTGAGGATCTTGCTTCGAGGTATTCTGATTGTAGCTCTGCTAAACGCGGTGGCGATCTTGGTCCTTTTGGTCGTGGCCAGATGCAGAAGCCTTTTGAAGATGCAACTTATGCTCTTCAAGTTGGTGAAATTAGTGACATTGTGGATAGTGACAGTGGATCCCACATAATCAAGAGAACAAATTGA

Protein sequence

>Msa1254710

MSSSRGGAEVRASHILIKHEGSRRKASWKDPEGYVIKNTTRESAVAILTSMKQDILSGKAKFEDLASRYSDCSSAKRGGDLGPFGRGQMQKPFEDATYALQVGEISDIVDSDSGSHIIKRTN*