Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0316610 | XP_013462892.1 | 96.532 | 173 | 6 | 0 | 1 | 173 | 1 | 173 | 1.19e-122 | 353 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0316610 | sp|Q94AU9|RBCX1_ARATH | 70.270 | 148 | 41 | 2 | 25 | 172 | 27 | 171 | 2.86e-71 | 215 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0012380 | Msa0316610 | 0.879487 | 1.197302e-69 | -8.615850e-47 |
Msa0014410 | Msa0316610 | 0.804758 | 1.852198e-49 | -8.615850e-47 |
Msa0024900 | Msa0316610 | 0.819347 | 1.218138e-52 | -8.615850e-47 |
Msa0034940 | Msa0316610 | 0.801349 | 9.389888e-49 | -8.615850e-47 |
Msa0044180 | Msa0316610 | 0.812583 | 3.941241e-51 | -8.615850e-47 |
Msa0064550 | Msa0316610 | 0.816369 | 5.730785e-52 | -8.615850e-47 |
Msa0072390 | Msa0316610 | 0.800958 | 1.128621e-48 | -8.615850e-47 |
Msa0081120 | Msa0316610 | 0.811109 | 8.249654e-51 | -8.615850e-47 |
Msa0108070 | Msa0316610 | 0.828705 | 7.747355e-55 | -8.615850e-47 |
Msa0114700 | Msa0316610 | 0.804930 | 1.705359e-49 | -8.615850e-47 |
Msa0125600 | Msa0316610 | -0.801701 | 7.951926e-49 | -8.615850e-47 |
Msa0140290 | Msa0316610 | 0.804343 | 2.260513e-49 | -8.615850e-47 |
Msa0154220 | Msa0316610 | 0.828783 | 7.421121e-55 | -8.615850e-47 |
Msa0154240 | Msa0316610 | 0.831780 | 1.375016e-55 | -8.615850e-47 |
Msa0154270 | Msa0316610 | 0.859863 | 3.080722e-63 | -8.615850e-47 |
Msa0175670 | Msa0316610 | 0.801803 | 7.577520e-49 | -8.615850e-47 |
Msa0180100 | Msa0316610 | 0.814287 | 1.664084e-51 | -8.615850e-47 |
Msa0183560 | Msa0316610 | 0.803599 | 3.228842e-49 | -8.615850e-47 |
Msa0184510 | Msa0316610 | 0.827629 | 1.408132e-54 | -8.615850e-47 |
Msa0187980 | Msa0316610 | 0.836498 | 9.032321e-57 | -8.615850e-47 |
Msa0197030 | Msa0316610 | 0.935200 | 1.232878e-96 | -8.615850e-47 |
Msa0238860 | Msa0316610 | 0.965999 | 2.446499e-125 | -8.615850e-47 |
Msa0253160 | Msa0316610 | 0.814235 | 1.708389e-51 | -8.615850e-47 |
Msa0276590 | Msa0316610 | 0.954414 | 3.121314e-112 | -8.615850e-47 |
Msa0291940 | Msa0316610 | 0.811415 | 7.081805e-51 | -8.615850e-47 |
Msa0306160 | Msa0316610 | 0.800533 | 1.378676e-48 | -8.615850e-47 |
Msa0316610 | Msa0344680 | 0.892827 | 1.108723e-74 | -8.615850e-47 |
Msa0316610 | Msa0382590 | 0.807347 | 5.284977e-50 | -8.615850e-47 |
Msa0316610 | Msa0387970 | 0.871889 | 4.843079e-67 | -8.615850e-47 |
Msa0316610 | Msa0392050 | 0.890920 | 6.368648e-74 | -8.615850e-47 |
Msa0316610 | Msa0392540 | 0.844827 | 5.938269e-59 | -8.615850e-47 |
Msa0316610 | Msa0404060 | 0.846234 | 2.468514e-59 | -8.615850e-47 |
Msa0316610 | Msa0404070 | 0.862608 | 4.494012e-64 | -8.615850e-47 |
Msa0316610 | Msa0412190 | 0.800831 | 1.198601e-48 | -8.615850e-47 |
Msa0316610 | Msa0425320 | 0.825523 | 4.474977e-54 | -8.615850e-47 |
Msa0316610 | Msa0432720 | 0.811872 | 5.634182e-51 | -8.615850e-47 |
Msa0316610 | Msa0437550 | 0.854459 | 1.214102e-61 | -8.615850e-47 |
Msa0316610 | Msa0437790 | 0.804126 | 2.508933e-49 | -8.615850e-47 |
Msa0316610 | Msa0440310 | 0.841337 | 5.050433e-58 | -8.615850e-47 |
Msa0316610 | Msa0469950 | 0.891584 | 3.475187e-74 | -8.615850e-47 |
Msa0316610 | Msa0471760 | 0.821408 | 4.102517e-53 | -8.615850e-47 |
Msa0316610 | Msa0487490 | 0.811710 | 6.110209e-51 | -8.615850e-47 |
Msa0316610 | Msa0515460 | 0.823476 | 1.357341e-53 | -8.615850e-47 |
Msa0316610 | Msa0525270 | 0.855835 | 4.832537e-62 | -8.615850e-47 |
Msa0316610 | Msa0525280 | 0.858004 | 1.108874e-62 | -8.615850e-47 |
Msa0316610 | Msa0530340 | 0.874610 | 5.905747e-68 | -8.615850e-47 |
Msa0316610 | Msa0545230 | 0.809051 | 2.290069e-50 | -8.615850e-47 |
Msa0316610 | Msa0546080 | 0.804899 | 1.731102e-49 | -8.615850e-47 |
Msa0316610 | Msa0548210 | 0.893902 | 4.075077e-75 | -8.615850e-47 |
Msa0316610 | Msa0549540 | 0.899738 | 1.471853e-77 | -8.615850e-47 |
Msa0316610 | Msa0549760 | 0.803458 | 3.453178e-49 | -8.615850e-47 |
Msa0316610 | Msa0556070 | 0.849158 | 3.870233e-60 | -8.615850e-47 |
Msa0316610 | Msa0570680 | 0.823716 | 1.192404e-53 | -8.615850e-47 |
Msa0316610 | Msa0577050 | 0.832194 | 1.086100e-55 | -8.615850e-47 |
Msa0316610 | Msa0604880 | 0.878467 | 2.742205e-69 | -8.615850e-47 |
Msa0316610 | Msa0605250 | 0.870342 | 1.569250e-66 | -8.615850e-47 |
Msa0316610 | Msa0608780 | 0.816313 | 5.899102e-52 | -8.615850e-47 |
Msa0316610 | Msa0609790 | 0.834652 | 2.647982e-56 | -8.615850e-47 |
Msa0316610 | Msa0610780 | 0.824705 | 6.982257e-54 | -8.615850e-47 |
Msa0316610 | Msa0610810 | 0.828480 | 8.780278e-55 | -8.615850e-47 |
Msa0316610 | Msa0619390 | 0.810451 | 1.145111e-50 | -8.615850e-47 |
Msa0316610 | Msa0622250 | 0.845404 | 4.147183e-59 | -8.615850e-47 |
Msa0316610 | Msa0624040 | 0.823330 | 1.467734e-53 | -8.615850e-47 |
Msa0316610 | Msa0627050 | 0.877255 | 7.278173e-69 | -8.615850e-47 |
Msa0316610 | Msa0636720 | 0.834515 | 2.866006e-56 | -8.615850e-47 |
Msa0316610 | Msa0644630 | 0.877405 | 6.454169e-69 | -8.615850e-47 |
Msa0316610 | Msa0646190 | 0.905647 | 3.440172e-80 | -8.615850e-47 |
Msa0316610 | Msa0646340 | 0.811690 | 6.169980e-51 | -8.615850e-47 |
Msa0316610 | Msa0651310 | 0.860794 | 1.610851e-63 | -8.615850e-47 |
Msa0316610 | Msa0675010 | 0.811011 | 8.663076e-51 | -8.615850e-47 |
Msa0316610 | Msa0681210 | 0.832932 | 7.127444e-56 | -8.615850e-47 |
Msa0316610 | Msa0685890 | 0.833791 | 4.353672e-56 | -8.615850e-47 |
Msa0316610 | Msa0693400 | 0.827108 | 1.876482e-54 | -8.615850e-47 |
Msa0316610 | Msa0693500 | 0.842065 | 3.246946e-58 | -8.615850e-47 |
Msa0316610 | Msa0705810 | 0.822668 | 2.094761e-53 | -8.615850e-47 |
Msa0316610 | Msa0742090 | 0.857652 | 1.410752e-62 | -8.615850e-47 |
Msa0316610 | Msa0742160 | 0.809998 | 1.434393e-50 | -8.615850e-47 |
Msa0316610 | Msa0748330 | 0.837339 | 5.511715e-57 | -8.615850e-47 |
Msa0316610 | Msa0749150 | 0.802060 | 6.711121e-49 | -8.615850e-47 |
Msa0316610 | Msa0781390 | 0.802859 | 4.592823e-49 | -8.615850e-47 |
Msa0316610 | Msa0790640 | 0.814419 | 1.555261e-51 | -8.615850e-47 |
Msa0316610 | Msa0793100 | 0.829118 | 6.153836e-55 | -8.615850e-47 |
Msa0316610 | Msa0823310 | 0.841941 | 3.500905e-58 | -8.615850e-47 |
Msa0316610 | Msa0823420 | 0.807605 | 4.658308e-50 | -8.615850e-47 |
Msa0316610 | Msa0862290 | 0.808650 | 2.790564e-50 | -8.615850e-47 |
Msa0316610 | Msa0879650 | 0.832314 | 1.014450e-55 | -8.615850e-47 |
Msa0316610 | Msa0887100 | 0.830414 | 2.975883e-55 | -8.615850e-47 |
Msa0316610 | Msa0892020 | 0.808873 | 2.501056e-50 | -8.615850e-47 |
Msa0316610 | Msa0944690 | 0.834571 | 2.775780e-56 | -8.615850e-47 |
Msa0316610 | Msa0956910 | 0.810529 | 1.101591e-50 | -8.615850e-47 |
Msa0316610 | Msa0984000 | 0.860850 | 1.548986e-63 | -8.615850e-47 |
Msa0316610 | Msa1082150 | 0.837838 | 4.105068e-57 | -8.615850e-47 |
Msa0316610 | Msa1144730 | 0.891917 | 2.562067e-74 | -8.615850e-47 |
Msa0316610 | Msa1173380 | 0.878541 | 2.584223e-69 | -8.615850e-47 |
Msa0316610 | Msa1182800 | 0.811132 | 8.156887e-51 | -8.615850e-47 |
Msa0316610 | Msa1184010 | 0.828244 | 1.001054e-54 | -8.615850e-47 |
Msa0316610 | Msa1209160 | 0.816112 | 6.539823e-52 | -8.615850e-47 |
Msa0316610 | Msa1228350 | 0.818391 | 2.009105e-52 | -8.615850e-47 |
Msa0316610 | Msa1228460 | 0.814495 | 1.496672e-51 | -8.615850e-47 |
Msa0316610 | Msa1236860 | 0.819566 | 1.085904e-52 | -8.615850e-47 |
Msa0316610 | Msa1239900 | 0.814547 | 1.457692e-51 | -8.615850e-47 |
Msa0316610 | Msa1255020 | 0.860556 | 1.902256e-63 | -8.615850e-47 |
Msa0316610 | Msa1292960 | 0.802504 | 5.437659e-49 | -8.615850e-47 |
Msa0316610 | Msa1295470 | 0.860893 | 1.503164e-63 | -8.615850e-47 |
Msa0316610 | Msa1303760 | 0.806689 | 7.282099e-50 | -8.615850e-47 |
Msa0316610 | Msa1317240 | 0.816928 | 4.294188e-52 | -8.615850e-47 |
Msa0316610 | Msa1349810 | 0.851435 | 8.891181e-61 | -8.615850e-47 |
Msa0316610 | Msa1354090 | 0.821488 | 3.931678e-53 | -8.615850e-47 |
Msa0316610 | Msa1358340 | 0.838983 | 2.078580e-57 | -8.615850e-47 |
Msa0316610 | Msa1359890 | 0.909089 | 8.371284e-82 | -8.615850e-47 |
Msa0316610 | Msa1363070 | 0.808168 | 3.535966e-50 | -8.615850e-47 |
Msa0316610 | Msa1369180 | 0.813008 | 3.181652e-51 | -8.615850e-47 |
Msa0316610 | Msa1373390 | 0.810339 | 1.210964e-50 | -8.615850e-47 |
Msa0316610 | Msa1375780 | 0.813194 | 2.895566e-51 | -8.615850e-47 |
Msa0316610 | Msa1404690 | 0.828491 | 8.729204e-55 | -8.615850e-47 |
Msa0316610 | Msa1405380 | 0.817371 | 3.414655e-52 | -8.615850e-47 |
Msa0316610 | Msa1406020 | 0.873911 | 1.018613e-67 | -8.615850e-47 |
Msa0316610 | Msa1434660 | 0.851332 | 9.509053e-61 | -8.615850e-47 |
Msa0316610 | Msa1456620 | 0.817935 | 2.547614e-52 | -8.615850e-47 |
Msa0316610 | Msa1459540 | 0.810977 | 8.813081e-51 | -8.615850e-47 |
Msa0316610 | Msa1466130 | -0.813945 | 1.979734e-51 | -8.615850e-47 |
Msa0316610 | Msa1466350 | 0.801876 | 7.321373e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0316610 | MtrunA17_Chr2g0289141 | 96.532 | 173 | 6 | 0 | 1 | 173 | 1 | 173 | 1.10e-126 | 353 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0316610 | AT4G04330.1 | 70.270 | 148 | 41 | 2 | 25 | 172 | 27 | 171 | 2.90e-72 | 215 |
Find 48 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGATTTGTCCAACCACTTA+TGG | 0.272786 | 2_4:-13767052 | None:intergenic |
CTCTTGCCAGCTGGCCAAAA+AGG | 0.282297 | 2_4:-13765801 | None:intergenic |
ATATTGATATGTATGGAAAT+TGG | 0.302745 | 2_4:+13766940 | Msa0316610:three_prime_UTR |
TGTCCCATTCAAAATCCTTT+TGG | 0.366494 | 2_4:-13766645 | None:intergenic |
TGAAGCATATGTTGAGCTAA+TGG | 0.380963 | 2_4:+13766275 | Msa0316610:CDS |
TTGTTGGTGCATGGTGTAGC+AGG | 0.403399 | 2_4:-13765771 | None:intergenic |
ACTCTAACACGAGGCTTATG+AGG | 0.410584 | 2_4:+13766815 | Msa0316610:CDS |
ATTAGCTCAACATATGCTTC+AGG | 0.434378 | 2_4:-13766273 | None:intergenic |
AAATCGAGTTAGACCATAAG+TGG | 0.434411 | 2_4:+13767039 | Msa0316610:three_prime_UTR |
GTGCAACATATTGATATGTA+TGG | 0.445645 | 2_4:+13766933 | Msa0316610:three_prime_UTR |
GAGCTCCTTCTCTTGCCAGC+TGG | 0.451237 | 2_4:-13765810 | None:intergenic |
TTGAATAGCCCTACGCATAA+TGG | 0.455624 | 2_4:+13766516 | Msa0316610:intron |
GTTTGATCAATGGGAATGAA+AGG | 0.458962 | 2_4:-13766902 | None:intergenic |
CTTCTCAGTTTCAGAACGAC+TGG | 0.465661 | 2_4:-13766854 | None:intergenic |
AATTACAAACCTTAAAAGCT+AGG | 0.489206 | 2_4:-13766678 | None:intergenic |
GAAAGGGCTTGCTTTGCTGC+AGG | 0.490075 | 2_4:-13766885 | None:intergenic |
TTTGATCAATGGGAATGAAA+GGG | 0.496972 | 2_4:-13766901 | None:intergenic |
TGTTGAGCTAATGGAATTTG+TGG | 0.500110 | 2_4:+13766284 | Msa0316610:CDS |
TACATAGCTCAGTGTTTGCA+TGG | 0.509009 | 2_4:+13767003 | Msa0316610:three_prime_UTR |
TACATATCAATATGTTGCAC+AGG | 0.515031 | 2_4:-13766930 | None:intergenic |
ACTTGTCACCATCATCTAAC+GGG | 0.516413 | 2_4:-13766314 | None:intergenic |
CATTTACCTCCATTATGCGT+AGG | 0.520633 | 2_4:-13766525 | None:intergenic |
TCATCAAGACATAAGAACTT+AGG | 0.525555 | 2_4:+13766360 | Msa0316610:CDS |
GGTGTAGCAGGGTAAACATA+AGG | 0.525917 | 2_4:-13765759 | None:intergenic |
ATTTACCTCCATTATGCGTA+GGG | 0.537053 | 2_4:-13766524 | None:intergenic |
ATGTATGGAAATTGGAAAGA+TGG | 0.540841 | 2_4:+13766948 | Msa0316610:three_prime_UTR |
TTTGGCCAGCTGGCAAGAGA+AGG | 0.542150 | 2_4:+13765805 | Msa0316610:CDS |
AATCGTTGCTGCTCAACTTG+AGG | 0.547786 | 2_4:+13766051 | Msa0316610:CDS |
GAGATCAGCATACTGCCAAA+AGG | 0.559923 | 2_4:+13766630 | Msa0316610:CDS |
AGAAGCAACACCGGAAGCAA+AGG | 0.569743 | 2_4:+13765985 | Msa0316610:CDS |
AACTTGTCACCATCATCTAA+CGG | 0.580454 | 2_4:-13766315 | None:intergenic |
TTCTGAAACTGAGAAGTGAA+TGG | 0.580741 | 2_4:+13766861 | Msa0316610:exon |
CAGTGTAGGTGAAGAAATTG+TGG | 0.581309 | 2_4:-13766021 | None:intergenic |
TAGAGCTGAAGATGATTCCA+TGG | 0.584821 | 2_4:-13765721 | None:intergenic |
TGCAACAAAATGTTTGTACC+TGG | 0.588133 | 2_4:+13765855 | Msa0316610:CDS |
CGAGTTAGACCATAAGTGGT+TGG | 0.590124 | 2_4:+13767043 | Msa0316610:three_prime_UTR |
CTCTAACACGAGGCTTATGA+GGG | 0.595924 | 2_4:+13766816 | Msa0316610:CDS |
TGTTGGTGCATGGTGTAGCA+GGG | 0.612247 | 2_4:-13765770 | None:intergenic |
AGGATTCGGAGAAGCAACAC+CGG | 0.623746 | 2_4:+13765976 | Msa0316610:intron |
TGGCAGAAGACTCACTCGCA+TGG | 0.631217 | 2_4:+13766968 | Msa0316610:three_prime_UTR |
GCTTATGAGGGATTACGTCT+CGG | 0.635882 | 2_4:+13766828 | Msa0316610:CDS |
GATAAACACCCGTTAGATGA+TGG | 0.636151 | 2_4:+13766306 | Msa0316610:CDS |
TGATGATTCTCTGAACATAG+TGG | 0.639406 | 2_4:-13766343 | None:intergenic |
TGTAGGTGAAGAAATTGTGG+AGG | 0.663333 | 2_4:-13766018 | None:intergenic |
AATAGCCCTACGCATAATGG+AGG | 0.664082 | 2_4:+13766519 | Msa0316610:intron |
TTTGTTGCATTGCAACCGTG+TGG | 0.685225 | 2_4:-13765841 | None:intergenic |
GGAGCTCTCAATTATCCACA+CGG | 0.710162 | 2_4:+13765826 | Msa0316610:CDS |
TGGTCACTGACTCTAACACG+AGG | 0.758847 | 2_4:+13766806 | Msa0316610:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGTTATTTAATTCAAGTTAT+TGG | + | chr2_4:13766168-13766187 | Msa0316610:intron | 15.0% |
!! | TATGGTGTAATATTATATAT+AGG | + | chr2_4:13766606-13766625 | Msa0316610:intron | 15.0% |
!!! | TGTTATTTAATTCAAGTTAT+TGG | + | chr2_4:13766168-13766187 | Msa0316610:intron | 15.0% |
!! | TATGGTGTAATATTATATAT+AGG | + | chr2_4:13766606-13766625 | Msa0316610:intron | 15.0% |
!! | AAAACAAACTAAAACAACAA+AGG | - | chr2_4:13766096-13766115 | None:intergenic | 20.0% |
!! | TTGAATTAAATAACACAACT+AGG | - | chr2_4:13766163-13766182 | None:intergenic | 20.0% |
!! | TAATAGACACTTAACTATTA+AGG | - | chr2_4:13766412-13766431 | None:intergenic | 20.0% |
!! | ATATTGATATGTATGGAAAT+TGG | + | chr2_4:13766940-13766959 | Msa0316610:three_prime_UTR | 20.0% |
!! | AAAACAAACTAAAACAACAA+AGG | - | chr2_4:13766096-13766115 | None:intergenic | 20.0% |
!! | TTGAATTAAATAACACAACT+AGG | - | chr2_4:13766163-13766182 | None:intergenic | 20.0% |
!! | TAATAGACACTTAACTATTA+AGG | - | chr2_4:13766412-13766431 | None:intergenic | 20.0% |
!! | ATATTGATATGTATGGAAAT+TGG | + | chr2_4:13766940-13766959 | Msa0316610:three_prime_UTR | 20.0% |
!! | TTACAACTTCAATTTTGTAC+TGG | + | chr2_4:13765883-13765902 | Msa0316610:intron | 25.0% |
! | AAAACAACAAAGGCAAATAA+AGG | - | chr2_4:13766086-13766105 | None:intergenic | 25.0% |
! | TTAAATAACACAACTAGGTT+GGG | - | chr2_4:13766158-13766177 | None:intergenic | 25.0% |
! | ATTAAATAACACAACTAGGT+TGG | - | chr2_4:13766159-13766178 | None:intergenic | 25.0% |
! | ACACTTAACTATTAAGGATT+GGG | - | chr2_4:13766406-13766425 | None:intergenic | 25.0% |
! | TAACCAACAACTATTCTATA+TGG | + | chr2_4:13766434-13766453 | Msa0316610:intron | 25.0% |
!! | AAAACTTGCTTAATAAGTGA+TGG | - | chr2_4:13766574-13766593 | None:intergenic | 25.0% |
!!! | AGTTTTGATTGAGTATACTA+TGG | + | chr2_4:13766588-13766607 | Msa0316610:intron | 25.0% |
! | AATTACAAACCTTAAAAGCT+AGG | - | chr2_4:13766681-13766700 | None:intergenic | 25.0% |
! | GGAAGTTGAATAAATTTAGT+AGG | - | chr2_4:13766743-13766762 | None:intergenic | 25.0% |
! | AACAGTTACATGCATTATTA+AGG | - | chr2_4:13766764-13766783 | None:intergenic | 25.0% |
!! | TTACAACTTCAATTTTGTAC+TGG | + | chr2_4:13765883-13765902 | Msa0316610:intron | 25.0% |
! | AAAACAACAAAGGCAAATAA+AGG | - | chr2_4:13766086-13766105 | None:intergenic | 25.0% |
! | TTAAATAACACAACTAGGTT+GGG | - | chr2_4:13766158-13766177 | None:intergenic | 25.0% |
! | ATTAAATAACACAACTAGGT+TGG | - | chr2_4:13766159-13766178 | None:intergenic | 25.0% |
! | ACACTTAACTATTAAGGATT+GGG | - | chr2_4:13766406-13766425 | None:intergenic | 25.0% |
! | TAACCAACAACTATTCTATA+TGG | + | chr2_4:13766434-13766453 | Msa0316610:intron | 25.0% |
!! | AAAACTTGCTTAATAAGTGA+TGG | - | chr2_4:13766574-13766593 | None:intergenic | 25.0% |
!!! | AGTTTTGATTGAGTATACTA+TGG | + | chr2_4:13766588-13766607 | Msa0316610:intron | 25.0% |
! | AATTACAAACCTTAAAAGCT+AGG | - | chr2_4:13766681-13766700 | None:intergenic | 25.0% |
! | GGAAGTTGAATAAATTTAGT+AGG | - | chr2_4:13766743-13766762 | None:intergenic | 25.0% |
! | AACAGTTACATGCATTATTA+AGG | - | chr2_4:13766764-13766783 | None:intergenic | 25.0% |
!! | AACTTCAATTTTGTACTGGT+TGG | + | chr2_4:13765887-13765906 | Msa0316610:intron | 30.0% |
AATAGTGTGCTATGTTATCT+TGG | + | chr2_4:13765949-13765968 | Msa0316610:intron | 30.0% | |
TCATCAAGACATAAGAACTT+AGG | + | chr2_4:13766360-13766379 | Msa0316610:CDS | 30.0% | |
AAGACATAAGAACTTAGGTA+AGG | + | chr2_4:13766365-13766384 | Msa0316610:intron | 30.0% | |
GACACTTAACTATTAAGGAT+TGG | - | chr2_4:13766407-13766426 | None:intergenic | 30.0% | |
TCACCATATAGAATAGTTGT+TGG | - | chr2_4:13766440-13766459 | None:intergenic | 30.0% | |
TTTGATCAATGGGAATGAAA+GGG | - | chr2_4:13766904-13766923 | None:intergenic | 30.0% | |
TACATATCAATATGTTGCAC+AGG | - | chr2_4:13766933-13766952 | None:intergenic | 30.0% | |
GTGCAACATATTGATATGTA+TGG | + | chr2_4:13766933-13766952 | Msa0316610:three_prime_UTR | 30.0% | |
ATGTATGGAAATTGGAAAGA+TGG | + | chr2_4:13766948-13766967 | Msa0316610:three_prime_UTR | 30.0% | |
!! | AACTTCAATTTTGTACTGGT+TGG | + | chr2_4:13765887-13765906 | Msa0316610:intron | 30.0% |
AATAGTGTGCTATGTTATCT+TGG | + | chr2_4:13765949-13765968 | Msa0316610:intron | 30.0% | |
TCATCAAGACATAAGAACTT+AGG | + | chr2_4:13766360-13766379 | Msa0316610:CDS | 30.0% | |
AAGACATAAGAACTTAGGTA+AGG | + | chr2_4:13766365-13766384 | Msa0316610:intron | 30.0% | |
GACACTTAACTATTAAGGAT+TGG | - | chr2_4:13766407-13766426 | None:intergenic | 30.0% | |
TCACCATATAGAATAGTTGT+TGG | - | chr2_4:13766440-13766459 | None:intergenic | 30.0% | |
TTTGATCAATGGGAATGAAA+GGG | - | chr2_4:13766904-13766923 | None:intergenic | 30.0% | |
TACATATCAATATGTTGCAC+AGG | - | chr2_4:13766933-13766952 | None:intergenic | 30.0% | |
GTGCAACATATTGATATGTA+TGG | + | chr2_4:13766933-13766952 | Msa0316610:three_prime_UTR | 30.0% | |
ATGTATGGAAATTGGAAAGA+TGG | + | chr2_4:13766948-13766967 | Msa0316610:three_prime_UTR | 30.0% | |
! | CCAAAAAGGATAGCTTTTGT+TGG | - | chr2_4:13765790-13765809 | None:intergenic | 35.0% |
! | CCAACAAAAGCTATCCTTTT+TGG | + | chr2_4:13765787-13765806 | Msa0316610:CDS | 35.0% |
TGCAACAAAATGTTTGTACC+TGG | + | chr2_4:13765855-13765874 | Msa0316610:CDS | 35.0% | |
ACAAAATGTTTGTACCTGGT+CGG | + | chr2_4:13765859-13765878 | Msa0316610:intron | 35.0% | |
! | GAAGAAATTGTGGAGGTTTT+TGG | - | chr2_4:13766014-13766033 | None:intergenic | 35.0% |
!!! | AACGATTTTAACTGCAGTGT+AGG | - | chr2_4:13766038-13766057 | None:intergenic | 35.0% |
CAACAAAGGCAAATAAAGGA+GGG | - | chr2_4:13766082-13766101 | None:intergenic | 35.0% | |
ACAACAAAGGCAAATAAAGG+AGG | - | chr2_4:13766083-13766102 | None:intergenic | 35.0% | |
ATTAGCTCAACATATGCTTC+AGG | - | chr2_4:13766276-13766295 | None:intergenic | 35.0% | |
TGAAGCATATGTTGAGCTAA+TGG | + | chr2_4:13766275-13766294 | Msa0316610:CDS | 35.0% | |
TGTTGAGCTAATGGAATTTG+TGG | + | chr2_4:13766284-13766303 | Msa0316610:CDS | 35.0% | |
AACTTGTCACCATCATCTAA+CGG | - | chr2_4:13766318-13766337 | None:intergenic | 35.0% | |
TGATGATTCTCTGAACATAG+TGG | - | chr2_4:13766346-13766365 | None:intergenic | 35.0% | |
AAATCCTGTAAACTGATGTG+TGG | + | chr2_4:13766476-13766495 | Msa0316610:intron | 35.0% | |
ATTTACCTCCATTATGCGTA+GGG | - | chr2_4:13766527-13766546 | None:intergenic | 35.0% | |
! | ACTGCCAAAAGGATTTTGAA+TGG | + | chr2_4:13766641-13766660 | Msa0316610:CDS | 35.0% |
! | CTGCCAAAAGGATTTTGAAT+GGG | + | chr2_4:13766642-13766661 | Msa0316610:CDS | 35.0% |
! | TGTCCCATTCAAAATCCTTT+TGG | - | chr2_4:13766648-13766667 | None:intergenic | 35.0% |
!! | TTCTGAAACTGAGAAGTGAA+TGG | + | chr2_4:13766861-13766880 | Msa0316610:exon | 35.0% |
GTTTGATCAATGGGAATGAA+AGG | - | chr2_4:13766905-13766924 | None:intergenic | 35.0% | |
!! | CAGGCTTTTGTTTGATCAAT+GGG | - | chr2_4:13766914-13766933 | None:intergenic | 35.0% |
!! | ACAGGCTTTTGTTTGATCAA+TGG | - | chr2_4:13766915-13766934 | None:intergenic | 35.0% |
AAATCGAGTTAGACCATAAG+TGG | + | chr2_4:13767039-13767058 | Msa0316610:three_prime_UTR | 35.0% | |
! | CCAAAAAGGATAGCTTTTGT+TGG | - | chr2_4:13765790-13765809 | None:intergenic | 35.0% |
! | CCAACAAAAGCTATCCTTTT+TGG | + | chr2_4:13765787-13765806 | Msa0316610:CDS | 35.0% |
TGCAACAAAATGTTTGTACC+TGG | + | chr2_4:13765855-13765874 | Msa0316610:CDS | 35.0% | |
ACAAAATGTTTGTACCTGGT+CGG | + | chr2_4:13765859-13765878 | Msa0316610:intron | 35.0% | |
! | GAAGAAATTGTGGAGGTTTT+TGG | - | chr2_4:13766014-13766033 | None:intergenic | 35.0% |
!!! | AACGATTTTAACTGCAGTGT+AGG | - | chr2_4:13766038-13766057 | None:intergenic | 35.0% |
CAACAAAGGCAAATAAAGGA+GGG | - | chr2_4:13766082-13766101 | None:intergenic | 35.0% | |
ACAACAAAGGCAAATAAAGG+AGG | - | chr2_4:13766083-13766102 | None:intergenic | 35.0% | |
ATTAGCTCAACATATGCTTC+AGG | - | chr2_4:13766276-13766295 | None:intergenic | 35.0% | |
TGAAGCATATGTTGAGCTAA+TGG | + | chr2_4:13766275-13766294 | Msa0316610:CDS | 35.0% | |
TGTTGAGCTAATGGAATTTG+TGG | + | chr2_4:13766284-13766303 | Msa0316610:CDS | 35.0% | |
AACTTGTCACCATCATCTAA+CGG | - | chr2_4:13766318-13766337 | None:intergenic | 35.0% | |
TGATGATTCTCTGAACATAG+TGG | - | chr2_4:13766346-13766365 | None:intergenic | 35.0% | |
AAATCCTGTAAACTGATGTG+TGG | + | chr2_4:13766476-13766495 | Msa0316610:intron | 35.0% | |
ATTTACCTCCATTATGCGTA+GGG | - | chr2_4:13766527-13766546 | None:intergenic | 35.0% | |
! | ACTGCCAAAAGGATTTTGAA+TGG | + | chr2_4:13766641-13766660 | Msa0316610:CDS | 35.0% |
! | CTGCCAAAAGGATTTTGAAT+GGG | + | chr2_4:13766642-13766661 | Msa0316610:CDS | 35.0% |
! | TGTCCCATTCAAAATCCTTT+TGG | - | chr2_4:13766648-13766667 | None:intergenic | 35.0% |
!! | TTCTGAAACTGAGAAGTGAA+TGG | + | chr2_4:13766861-13766880 | Msa0316610:exon | 35.0% |
GTTTGATCAATGGGAATGAA+AGG | - | chr2_4:13766905-13766924 | None:intergenic | 35.0% | |
!! | CAGGCTTTTGTTTGATCAAT+GGG | - | chr2_4:13766914-13766933 | None:intergenic | 35.0% |
!! | ACAGGCTTTTGTTTGATCAA+TGG | - | chr2_4:13766915-13766934 | None:intergenic | 35.0% |
AAATCGAGTTAGACCATAAG+TGG | + | chr2_4:13767039-13767058 | Msa0316610:three_prime_UTR | 35.0% | |
ATTGAAGTTGTAAACCGACC+AGG | - | chr2_4:13765876-13765895 | None:intergenic | 40.0% | |
TGCTATGTTATCTTGGATGC+AGG | + | chr2_4:13765956-13765975 | Msa0316610:intron | 40.0% | |
GTTATCTTGGATGCAGGATT+CGG | + | chr2_4:13765962-13765981 | Msa0316610:intron | 40.0% | |
TGTAGGTGAAGAAATTGTGG+AGG | - | chr2_4:13766021-13766040 | None:intergenic | 40.0% | |
CAGTGTAGGTGAAGAAATTG+TGG | - | chr2_4:13766024-13766043 | None:intergenic | 40.0% | |
CAGGATTATAACTCTGCTCA+TGG | - | chr2_4:13766257-13766276 | None:intergenic | 40.0% | |
GATAAACACCCGTTAGATGA+TGG | + | chr2_4:13766306-13766325 | Msa0316610:CDS | 40.0% | |
ACTTGTCACCATCATCTAAC+GGG | - | chr2_4:13766317-13766336 | None:intergenic | 40.0% | |
TTGAATAGCCCTACGCATAA+TGG | + | chr2_4:13766516-13766535 | Msa0316610:intron | 40.0% | |
CATTTACCTCCATTATGCGT+AGG | - | chr2_4:13766528-13766547 | None:intergenic | 40.0% | |
! | CTACGCATAATGGAGGTAAA+TGG | + | chr2_4:13766526-13766545 | Msa0316610:intron | 40.0% |
GAGGTAAATGGATGACTAGT+TGG | + | chr2_4:13766538-13766557 | Msa0316610:intron | 40.0% | |
TACATAGCTCAGTGTTTGCA+TGG | + | chr2_4:13767003-13767022 | Msa0316610:three_prime_UTR | 40.0% | |
ATTGAAGTTGTAAACCGACC+AGG | - | chr2_4:13765876-13765895 | None:intergenic | 40.0% | |
TGCTATGTTATCTTGGATGC+AGG | + | chr2_4:13765956-13765975 | Msa0316610:intron | 40.0% | |
GTTATCTTGGATGCAGGATT+CGG | + | chr2_4:13765962-13765981 | Msa0316610:intron | 40.0% | |
TGTAGGTGAAGAAATTGTGG+AGG | - | chr2_4:13766021-13766040 | None:intergenic | 40.0% | |
CAGTGTAGGTGAAGAAATTG+TGG | - | chr2_4:13766024-13766043 | None:intergenic | 40.0% | |
CAGGATTATAACTCTGCTCA+TGG | - | chr2_4:13766257-13766276 | None:intergenic | 40.0% | |
GATAAACACCCGTTAGATGA+TGG | + | chr2_4:13766306-13766325 | Msa0316610:CDS | 40.0% | |
ACTTGTCACCATCATCTAAC+GGG | - | chr2_4:13766317-13766336 | None:intergenic | 40.0% | |
TTGAATAGCCCTACGCATAA+TGG | + | chr2_4:13766516-13766535 | Msa0316610:intron | 40.0% | |
CATTTACCTCCATTATGCGT+AGG | - | chr2_4:13766528-13766547 | None:intergenic | 40.0% | |
! | CTACGCATAATGGAGGTAAA+TGG | + | chr2_4:13766526-13766545 | Msa0316610:intron | 40.0% |
GAGGTAAATGGATGACTAGT+TGG | + | chr2_4:13766538-13766557 | Msa0316610:intron | 40.0% | |
TACATAGCTCAGTGTTTGCA+TGG | + | chr2_4:13767003-13767022 | Msa0316610:three_prime_UTR | 40.0% | |
GGTGTAGCAGGGTAAACATA+AGG | - | chr2_4:13765762-13765781 | None:intergenic | 45.0% | |
! | GGATAGCTTTTGTTGGTGCA+TGG | - | chr2_4:13765783-13765802 | None:intergenic | 45.0% |
GGAGCTCTCAATTATCCACA+CGG | + | chr2_4:13765826-13765845 | Msa0316610:CDS | 45.0% | |
TTTGTTGCATTGCAACCGTG+TGG | - | chr2_4:13765844-13765863 | None:intergenic | 45.0% | |
!! | TTTTTGGCAGCCTTTGCTTC+CGG | - | chr2_4:13765998-13766017 | None:intergenic | 45.0% |
AATCGTTGCTGCTCAACTTG+AGG | + | chr2_4:13766051-13766070 | Msa0316610:CDS | 45.0% | |
AGAGCCACACATCAGTTTAC+AGG | - | chr2_4:13766483-13766502 | None:intergenic | 45.0% | |
AATAGCCCTACGCATAATGG+AGG | + | chr2_4:13766519-13766538 | Msa0316610:intron | 45.0% | |
GAGATCAGCATACTGCCAAA+AGG | + | chr2_4:13766630-13766649 | Msa0316610:CDS | 45.0% | |
!! | CTTGAAGCGCCTAGCTTTTA+AGG | + | chr2_4:13766669-13766688 | Msa0316610:CDS | 45.0% |
TAGCGTTGTCCTCTTGTAGA+TGG | + | chr2_4:13766786-13766805 | Msa0316610:intron | 45.0% | |
AGTCAGTGACCATCTACAAG+AGG | - | chr2_4:13766798-13766817 | None:intergenic | 45.0% | |
ACTCTAACACGAGGCTTATG+AGG | + | chr2_4:13766815-13766834 | Msa0316610:CDS | 45.0% | |
CTCTAACACGAGGCTTATGA+GGG | + | chr2_4:13766816-13766835 | Msa0316610:CDS | 45.0% | |
GCTTATGAGGGATTACGTCT+CGG | + | chr2_4:13766828-13766847 | Msa0316610:CDS | 45.0% | |
CTTCTCAGTTTCAGAACGAC+TGG | - | chr2_4:13766857-13766876 | None:intergenic | 45.0% | |
CGAGTTAGACCATAAGTGGT+TGG | + | chr2_4:13767043-13767062 | Msa0316610:three_prime_UTR | 45.0% | |
GGTGTAGCAGGGTAAACATA+AGG | - | chr2_4:13765762-13765781 | None:intergenic | 45.0% | |
! | GGATAGCTTTTGTTGGTGCA+TGG | - | chr2_4:13765783-13765802 | None:intergenic | 45.0% |
GGAGCTCTCAATTATCCACA+CGG | + | chr2_4:13765826-13765845 | Msa0316610:CDS | 45.0% | |
TTTGTTGCATTGCAACCGTG+TGG | - | chr2_4:13765844-13765863 | None:intergenic | 45.0% | |
!! | TTTTTGGCAGCCTTTGCTTC+CGG | - | chr2_4:13765998-13766017 | None:intergenic | 45.0% |
AATCGTTGCTGCTCAACTTG+AGG | + | chr2_4:13766051-13766070 | Msa0316610:CDS | 45.0% | |
AGAGCCACACATCAGTTTAC+AGG | - | chr2_4:13766483-13766502 | None:intergenic | 45.0% | |
AATAGCCCTACGCATAATGG+AGG | + | chr2_4:13766519-13766538 | Msa0316610:intron | 45.0% | |
GAGATCAGCATACTGCCAAA+AGG | + | chr2_4:13766630-13766649 | Msa0316610:CDS | 45.0% | |
!! | CTTGAAGCGCCTAGCTTTTA+AGG | + | chr2_4:13766669-13766688 | Msa0316610:CDS | 45.0% |
TAGCGTTGTCCTCTTGTAGA+TGG | + | chr2_4:13766786-13766805 | Msa0316610:intron | 45.0% | |
AGTCAGTGACCATCTACAAG+AGG | - | chr2_4:13766798-13766817 | None:intergenic | 45.0% | |
ACTCTAACACGAGGCTTATG+AGG | + | chr2_4:13766815-13766834 | Msa0316610:CDS | 45.0% | |
CTCTAACACGAGGCTTATGA+GGG | + | chr2_4:13766816-13766835 | Msa0316610:CDS | 45.0% | |
GCTTATGAGGGATTACGTCT+CGG | + | chr2_4:13766828-13766847 | Msa0316610:CDS | 45.0% | |
CTTCTCAGTTTCAGAACGAC+TGG | - | chr2_4:13766857-13766876 | None:intergenic | 45.0% | |
TGTTGGTGCATGGTGTAGCA+GGG | - | chr2_4:13765773-13765792 | None:intergenic | 50.0% | |
TTGTTGGTGCATGGTGTAGC+AGG | - | chr2_4:13765774-13765793 | None:intergenic | 50.0% | |
!! | AGCTATCCTTTTTGGCCAGC+TGG | + | chr2_4:13765795-13765814 | Msa0316610:CDS | 50.0% |
AGGATTCGGAGAAGCAACAC+CGG | + | chr2_4:13765976-13765995 | Msa0316610:intron | 50.0% | |
AGAAGCAACACCGGAAGCAA+AGG | + | chr2_4:13765985-13766004 | Msa0316610:CDS | 50.0% | |
!! | ACTGATGTGTGGCTCTGACA+TGG | + | chr2_4:13766487-13766506 | Msa0316610:intron | 50.0% |
!! | TGGTCACTGACTCTAACACG+AGG | + | chr2_4:13766806-13766825 | Msa0316610:CDS | 50.0% |
TGTTGGTGCATGGTGTAGCA+GGG | - | chr2_4:13765773-13765792 | None:intergenic | 50.0% | |
TTGTTGGTGCATGGTGTAGC+AGG | - | chr2_4:13765774-13765793 | None:intergenic | 50.0% | |
!! | AGCTATCCTTTTTGGCCAGC+TGG | + | chr2_4:13765795-13765814 | Msa0316610:CDS | 50.0% |
AGGATTCGGAGAAGCAACAC+CGG | + | chr2_4:13765976-13765995 | Msa0316610:intron | 50.0% | |
AGAAGCAACACCGGAAGCAA+AGG | + | chr2_4:13765985-13766004 | Msa0316610:CDS | 50.0% | |
!! | ACTGATGTGTGGCTCTGACA+TGG | + | chr2_4:13766487-13766506 | Msa0316610:intron | 50.0% |
!! | TGGTCACTGACTCTAACACG+AGG | + | chr2_4:13766806-13766825 | Msa0316610:CDS | 50.0% |
CTCTTGCCAGCTGGCCAAAA+AGG | - | chr2_4:13765804-13765823 | None:intergenic | 55.0% | |
TTTGGCCAGCTGGCAAGAGA+AGG | + | chr2_4:13765805-13765824 | Msa0316610:CDS | 55.0% | |
! | GAAAGGGCTTGCTTTGCTGC+AGG | - | chr2_4:13766888-13766907 | None:intergenic | 55.0% |
TGGCAGAAGACTCACTCGCA+TGG | + | chr2_4:13766968-13766987 | Msa0316610:three_prime_UTR | 55.0% | |
CTCTTGCCAGCTGGCCAAAA+AGG | - | chr2_4:13765804-13765823 | None:intergenic | 55.0% | |
TTTGGCCAGCTGGCAAGAGA+AGG | + | chr2_4:13765805-13765824 | Msa0316610:CDS | 55.0% | |
! | GAAAGGGCTTGCTTTGCTGC+AGG | - | chr2_4:13766888-13766907 | None:intergenic | 55.0% |
TGGCAGAAGACTCACTCGCA+TGG | + | chr2_4:13766968-13766987 | Msa0316610:three_prime_UTR | 55.0% | |
GAGCTCCTTCTCTTGCCAGC+TGG | - | chr2_4:13765813-13765832 | None:intergenic | 60.0% | |
GAGCTCCTTCTCTTGCCAGC+TGG | - | chr2_4:13765813-13765832 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_4 | gene | 13765723 | 13767065 | 13765723 | ID=Msa0316610;Name=Msa0316610 |
chr2_4 | mRNA | 13765723 | 13767065 | 13765723 | ID=Msa0316610-mRNA-1;Parent=Msa0316610;Name=Msa0316610-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|1|0.83|1|1|1|6|186|173 |
chr2_4 | exon | 13765723 | 13765876 | 13765723 | ID=Msa0316610-mRNA-1:exon:5166;Parent=Msa0316610-mRNA-1 |
chr2_4 | exon | 13765978 | 13766072 | 13765978 | ID=Msa0316610-mRNA-1:exon:5167;Parent=Msa0316610-mRNA-1 |
chr2_4 | exon | 13766264 | 13766381 | 13766264 | ID=Msa0316610-mRNA-1:exon:5168;Parent=Msa0316610-mRNA-1 |
chr2_4 | exon | 13766524 | 13766540 | 13766524 | ID=Msa0316610-mRNA-1:exon:5169;Parent=Msa0316610-mRNA-1 |
chr2_4 | exon | 13766628 | 13766690 | 13766628 | ID=Msa0316610-mRNA-1:exon:5170;Parent=Msa0316610-mRNA-1 |
chr2_4 | exon | 13766805 | 13767065 | 13766805 | ID=Msa0316610-mRNA-1:exon:5171;Parent=Msa0316610-mRNA-1 |
chr2_4 | CDS | 13765723 | 13765876 | 13765723 | ID=Msa0316610-mRNA-1:cds;Parent=Msa0316610-mRNA-1 |
chr2_4 | CDS | 13765978 | 13766072 | 13765978 | ID=Msa0316610-mRNA-1:cds;Parent=Msa0316610-mRNA-1 |
chr2_4 | CDS | 13766264 | 13766381 | 13766264 | ID=Msa0316610-mRNA-1:cds;Parent=Msa0316610-mRNA-1 |
chr2_4 | CDS | 13766524 | 13766540 | 13766524 | ID=Msa0316610-mRNA-1:cds;Parent=Msa0316610-mRNA-1 |
chr2_4 | CDS | 13766628 | 13766690 | 13766628 | ID=Msa0316610-mRNA-1:cds;Parent=Msa0316610-mRNA-1 |
chr2_4 | CDS | 13766805 | 13766879 | 13766805 | ID=Msa0316610-mRNA-1:cds;Parent=Msa0316610-mRNA-1 |
chr2_4 | three_prime_UTR | 13766880 | 13767065 | 13766880 | ID=Msa0316610-mRNA-1:three_prime_utr;Parent=Msa0316610-mRNA-1 |
Gene Sequence |
Protein sequence |