AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0316610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0316610 MtrunA17_Chr2g0289141 96.532 173 6 0 1 173 1 173 1.10e-126 353
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0316610 AT4G04330.1 70.270 148 41 2 25 172 27 171 2.90e-72 215

Find 48 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGATTTGTCCAACCACTTA+TGG 0.272786 2_4:-13767052 None:intergenic
CTCTTGCCAGCTGGCCAAAA+AGG 0.282297 2_4:-13765801 None:intergenic
ATATTGATATGTATGGAAAT+TGG 0.302745 2_4:+13766940 Msa0316610:three_prime_UTR
TGTCCCATTCAAAATCCTTT+TGG 0.366494 2_4:-13766645 None:intergenic
TGAAGCATATGTTGAGCTAA+TGG 0.380963 2_4:+13766275 Msa0316610:CDS
TTGTTGGTGCATGGTGTAGC+AGG 0.403399 2_4:-13765771 None:intergenic
ACTCTAACACGAGGCTTATG+AGG 0.410584 2_4:+13766815 Msa0316610:CDS
ATTAGCTCAACATATGCTTC+AGG 0.434378 2_4:-13766273 None:intergenic
AAATCGAGTTAGACCATAAG+TGG 0.434411 2_4:+13767039 Msa0316610:three_prime_UTR
GTGCAACATATTGATATGTA+TGG 0.445645 2_4:+13766933 Msa0316610:three_prime_UTR
GAGCTCCTTCTCTTGCCAGC+TGG 0.451237 2_4:-13765810 None:intergenic
TTGAATAGCCCTACGCATAA+TGG 0.455624 2_4:+13766516 Msa0316610:intron
GTTTGATCAATGGGAATGAA+AGG 0.458962 2_4:-13766902 None:intergenic
CTTCTCAGTTTCAGAACGAC+TGG 0.465661 2_4:-13766854 None:intergenic
AATTACAAACCTTAAAAGCT+AGG 0.489206 2_4:-13766678 None:intergenic
GAAAGGGCTTGCTTTGCTGC+AGG 0.490075 2_4:-13766885 None:intergenic
TTTGATCAATGGGAATGAAA+GGG 0.496972 2_4:-13766901 None:intergenic
TGTTGAGCTAATGGAATTTG+TGG 0.500110 2_4:+13766284 Msa0316610:CDS
TACATAGCTCAGTGTTTGCA+TGG 0.509009 2_4:+13767003 Msa0316610:three_prime_UTR
TACATATCAATATGTTGCAC+AGG 0.515031 2_4:-13766930 None:intergenic
ACTTGTCACCATCATCTAAC+GGG 0.516413 2_4:-13766314 None:intergenic
CATTTACCTCCATTATGCGT+AGG 0.520633 2_4:-13766525 None:intergenic
TCATCAAGACATAAGAACTT+AGG 0.525555 2_4:+13766360 Msa0316610:CDS
GGTGTAGCAGGGTAAACATA+AGG 0.525917 2_4:-13765759 None:intergenic
ATTTACCTCCATTATGCGTA+GGG 0.537053 2_4:-13766524 None:intergenic
ATGTATGGAAATTGGAAAGA+TGG 0.540841 2_4:+13766948 Msa0316610:three_prime_UTR
TTTGGCCAGCTGGCAAGAGA+AGG 0.542150 2_4:+13765805 Msa0316610:CDS
AATCGTTGCTGCTCAACTTG+AGG 0.547786 2_4:+13766051 Msa0316610:CDS
GAGATCAGCATACTGCCAAA+AGG 0.559923 2_4:+13766630 Msa0316610:CDS
AGAAGCAACACCGGAAGCAA+AGG 0.569743 2_4:+13765985 Msa0316610:CDS
AACTTGTCACCATCATCTAA+CGG 0.580454 2_4:-13766315 None:intergenic
TTCTGAAACTGAGAAGTGAA+TGG 0.580741 2_4:+13766861 Msa0316610:exon
CAGTGTAGGTGAAGAAATTG+TGG 0.581309 2_4:-13766021 None:intergenic
TAGAGCTGAAGATGATTCCA+TGG 0.584821 2_4:-13765721 None:intergenic
TGCAACAAAATGTTTGTACC+TGG 0.588133 2_4:+13765855 Msa0316610:CDS
CGAGTTAGACCATAAGTGGT+TGG 0.590124 2_4:+13767043 Msa0316610:three_prime_UTR
CTCTAACACGAGGCTTATGA+GGG 0.595924 2_4:+13766816 Msa0316610:CDS
TGTTGGTGCATGGTGTAGCA+GGG 0.612247 2_4:-13765770 None:intergenic
AGGATTCGGAGAAGCAACAC+CGG 0.623746 2_4:+13765976 Msa0316610:intron
TGGCAGAAGACTCACTCGCA+TGG 0.631217 2_4:+13766968 Msa0316610:three_prime_UTR
GCTTATGAGGGATTACGTCT+CGG 0.635882 2_4:+13766828 Msa0316610:CDS
GATAAACACCCGTTAGATGA+TGG 0.636151 2_4:+13766306 Msa0316610:CDS
TGATGATTCTCTGAACATAG+TGG 0.639406 2_4:-13766343 None:intergenic
TGTAGGTGAAGAAATTGTGG+AGG 0.663333 2_4:-13766018 None:intergenic
AATAGCCCTACGCATAATGG+AGG 0.664082 2_4:+13766519 Msa0316610:intron
TTTGTTGCATTGCAACCGTG+TGG 0.685225 2_4:-13765841 None:intergenic
GGAGCTCTCAATTATCCACA+CGG 0.710162 2_4:+13765826 Msa0316610:CDS
TGGTCACTGACTCTAACACG+AGG 0.758847 2_4:+13766806 Msa0316610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTATTTAATTCAAGTTAT+TGG + chr2_4:13766168-13766187 Msa0316610:intron 15.0%
!! TATGGTGTAATATTATATAT+AGG + chr2_4:13766606-13766625 Msa0316610:intron 15.0%
!!! TGTTATTTAATTCAAGTTAT+TGG + chr2_4:13766168-13766187 Msa0316610:intron 15.0%
!! TATGGTGTAATATTATATAT+AGG + chr2_4:13766606-13766625 Msa0316610:intron 15.0%
!! AAAACAAACTAAAACAACAA+AGG - chr2_4:13766096-13766115 None:intergenic 20.0%
!! TTGAATTAAATAACACAACT+AGG - chr2_4:13766163-13766182 None:intergenic 20.0%
!! TAATAGACACTTAACTATTA+AGG - chr2_4:13766412-13766431 None:intergenic 20.0%
!! ATATTGATATGTATGGAAAT+TGG + chr2_4:13766940-13766959 Msa0316610:three_prime_UTR 20.0%
!! AAAACAAACTAAAACAACAA+AGG - chr2_4:13766096-13766115 None:intergenic 20.0%
!! TTGAATTAAATAACACAACT+AGG - chr2_4:13766163-13766182 None:intergenic 20.0%
!! TAATAGACACTTAACTATTA+AGG - chr2_4:13766412-13766431 None:intergenic 20.0%
!! ATATTGATATGTATGGAAAT+TGG + chr2_4:13766940-13766959 Msa0316610:three_prime_UTR 20.0%
!! TTACAACTTCAATTTTGTAC+TGG + chr2_4:13765883-13765902 Msa0316610:intron 25.0%
! AAAACAACAAAGGCAAATAA+AGG - chr2_4:13766086-13766105 None:intergenic 25.0%
! TTAAATAACACAACTAGGTT+GGG - chr2_4:13766158-13766177 None:intergenic 25.0%
! ATTAAATAACACAACTAGGT+TGG - chr2_4:13766159-13766178 None:intergenic 25.0%
! ACACTTAACTATTAAGGATT+GGG - chr2_4:13766406-13766425 None:intergenic 25.0%
! TAACCAACAACTATTCTATA+TGG + chr2_4:13766434-13766453 Msa0316610:intron 25.0%
!! AAAACTTGCTTAATAAGTGA+TGG - chr2_4:13766574-13766593 None:intergenic 25.0%
!!! AGTTTTGATTGAGTATACTA+TGG + chr2_4:13766588-13766607 Msa0316610:intron 25.0%
! AATTACAAACCTTAAAAGCT+AGG - chr2_4:13766681-13766700 None:intergenic 25.0%
! GGAAGTTGAATAAATTTAGT+AGG - chr2_4:13766743-13766762 None:intergenic 25.0%
! AACAGTTACATGCATTATTA+AGG - chr2_4:13766764-13766783 None:intergenic 25.0%
!! TTACAACTTCAATTTTGTAC+TGG + chr2_4:13765883-13765902 Msa0316610:intron 25.0%
! AAAACAACAAAGGCAAATAA+AGG - chr2_4:13766086-13766105 None:intergenic 25.0%
! TTAAATAACACAACTAGGTT+GGG - chr2_4:13766158-13766177 None:intergenic 25.0%
! ATTAAATAACACAACTAGGT+TGG - chr2_4:13766159-13766178 None:intergenic 25.0%
! ACACTTAACTATTAAGGATT+GGG - chr2_4:13766406-13766425 None:intergenic 25.0%
! TAACCAACAACTATTCTATA+TGG + chr2_4:13766434-13766453 Msa0316610:intron 25.0%
!! AAAACTTGCTTAATAAGTGA+TGG - chr2_4:13766574-13766593 None:intergenic 25.0%
!!! AGTTTTGATTGAGTATACTA+TGG + chr2_4:13766588-13766607 Msa0316610:intron 25.0%
! AATTACAAACCTTAAAAGCT+AGG - chr2_4:13766681-13766700 None:intergenic 25.0%
! GGAAGTTGAATAAATTTAGT+AGG - chr2_4:13766743-13766762 None:intergenic 25.0%
! AACAGTTACATGCATTATTA+AGG - chr2_4:13766764-13766783 None:intergenic 25.0%
!! AACTTCAATTTTGTACTGGT+TGG + chr2_4:13765887-13765906 Msa0316610:intron 30.0%
AATAGTGTGCTATGTTATCT+TGG + chr2_4:13765949-13765968 Msa0316610:intron 30.0%
TCATCAAGACATAAGAACTT+AGG + chr2_4:13766360-13766379 Msa0316610:CDS 30.0%
AAGACATAAGAACTTAGGTA+AGG + chr2_4:13766365-13766384 Msa0316610:intron 30.0%
GACACTTAACTATTAAGGAT+TGG - chr2_4:13766407-13766426 None:intergenic 30.0%
TCACCATATAGAATAGTTGT+TGG - chr2_4:13766440-13766459 None:intergenic 30.0%
TTTGATCAATGGGAATGAAA+GGG - chr2_4:13766904-13766923 None:intergenic 30.0%
TACATATCAATATGTTGCAC+AGG - chr2_4:13766933-13766952 None:intergenic 30.0%
GTGCAACATATTGATATGTA+TGG + chr2_4:13766933-13766952 Msa0316610:three_prime_UTR 30.0%
ATGTATGGAAATTGGAAAGA+TGG + chr2_4:13766948-13766967 Msa0316610:three_prime_UTR 30.0%
!! AACTTCAATTTTGTACTGGT+TGG + chr2_4:13765887-13765906 Msa0316610:intron 30.0%
AATAGTGTGCTATGTTATCT+TGG + chr2_4:13765949-13765968 Msa0316610:intron 30.0%
TCATCAAGACATAAGAACTT+AGG + chr2_4:13766360-13766379 Msa0316610:CDS 30.0%
AAGACATAAGAACTTAGGTA+AGG + chr2_4:13766365-13766384 Msa0316610:intron 30.0%
GACACTTAACTATTAAGGAT+TGG - chr2_4:13766407-13766426 None:intergenic 30.0%
TCACCATATAGAATAGTTGT+TGG - chr2_4:13766440-13766459 None:intergenic 30.0%
TTTGATCAATGGGAATGAAA+GGG - chr2_4:13766904-13766923 None:intergenic 30.0%
TACATATCAATATGTTGCAC+AGG - chr2_4:13766933-13766952 None:intergenic 30.0%
GTGCAACATATTGATATGTA+TGG + chr2_4:13766933-13766952 Msa0316610:three_prime_UTR 30.0%
ATGTATGGAAATTGGAAAGA+TGG + chr2_4:13766948-13766967 Msa0316610:three_prime_UTR 30.0%
! CCAAAAAGGATAGCTTTTGT+TGG - chr2_4:13765790-13765809 None:intergenic 35.0%
! CCAACAAAAGCTATCCTTTT+TGG + chr2_4:13765787-13765806 Msa0316610:CDS 35.0%
TGCAACAAAATGTTTGTACC+TGG + chr2_4:13765855-13765874 Msa0316610:CDS 35.0%
ACAAAATGTTTGTACCTGGT+CGG + chr2_4:13765859-13765878 Msa0316610:intron 35.0%
! GAAGAAATTGTGGAGGTTTT+TGG - chr2_4:13766014-13766033 None:intergenic 35.0%
!!! AACGATTTTAACTGCAGTGT+AGG - chr2_4:13766038-13766057 None:intergenic 35.0%
CAACAAAGGCAAATAAAGGA+GGG - chr2_4:13766082-13766101 None:intergenic 35.0%
ACAACAAAGGCAAATAAAGG+AGG - chr2_4:13766083-13766102 None:intergenic 35.0%
ATTAGCTCAACATATGCTTC+AGG - chr2_4:13766276-13766295 None:intergenic 35.0%
TGAAGCATATGTTGAGCTAA+TGG + chr2_4:13766275-13766294 Msa0316610:CDS 35.0%
TGTTGAGCTAATGGAATTTG+TGG + chr2_4:13766284-13766303 Msa0316610:CDS 35.0%
AACTTGTCACCATCATCTAA+CGG - chr2_4:13766318-13766337 None:intergenic 35.0%
TGATGATTCTCTGAACATAG+TGG - chr2_4:13766346-13766365 None:intergenic 35.0%
AAATCCTGTAAACTGATGTG+TGG + chr2_4:13766476-13766495 Msa0316610:intron 35.0%
ATTTACCTCCATTATGCGTA+GGG - chr2_4:13766527-13766546 None:intergenic 35.0%
! ACTGCCAAAAGGATTTTGAA+TGG + chr2_4:13766641-13766660 Msa0316610:CDS 35.0%
! CTGCCAAAAGGATTTTGAAT+GGG + chr2_4:13766642-13766661 Msa0316610:CDS 35.0%
! TGTCCCATTCAAAATCCTTT+TGG - chr2_4:13766648-13766667 None:intergenic 35.0%
!! TTCTGAAACTGAGAAGTGAA+TGG + chr2_4:13766861-13766880 Msa0316610:exon 35.0%
GTTTGATCAATGGGAATGAA+AGG - chr2_4:13766905-13766924 None:intergenic 35.0%
!! CAGGCTTTTGTTTGATCAAT+GGG - chr2_4:13766914-13766933 None:intergenic 35.0%
!! ACAGGCTTTTGTTTGATCAA+TGG - chr2_4:13766915-13766934 None:intergenic 35.0%
AAATCGAGTTAGACCATAAG+TGG + chr2_4:13767039-13767058 Msa0316610:three_prime_UTR 35.0%
! CCAAAAAGGATAGCTTTTGT+TGG - chr2_4:13765790-13765809 None:intergenic 35.0%
! CCAACAAAAGCTATCCTTTT+TGG + chr2_4:13765787-13765806 Msa0316610:CDS 35.0%
TGCAACAAAATGTTTGTACC+TGG + chr2_4:13765855-13765874 Msa0316610:CDS 35.0%
ACAAAATGTTTGTACCTGGT+CGG + chr2_4:13765859-13765878 Msa0316610:intron 35.0%
! GAAGAAATTGTGGAGGTTTT+TGG - chr2_4:13766014-13766033 None:intergenic 35.0%
!!! AACGATTTTAACTGCAGTGT+AGG - chr2_4:13766038-13766057 None:intergenic 35.0%
CAACAAAGGCAAATAAAGGA+GGG - chr2_4:13766082-13766101 None:intergenic 35.0%
ACAACAAAGGCAAATAAAGG+AGG - chr2_4:13766083-13766102 None:intergenic 35.0%
ATTAGCTCAACATATGCTTC+AGG - chr2_4:13766276-13766295 None:intergenic 35.0%
TGAAGCATATGTTGAGCTAA+TGG + chr2_4:13766275-13766294 Msa0316610:CDS 35.0%
TGTTGAGCTAATGGAATTTG+TGG + chr2_4:13766284-13766303 Msa0316610:CDS 35.0%
AACTTGTCACCATCATCTAA+CGG - chr2_4:13766318-13766337 None:intergenic 35.0%
TGATGATTCTCTGAACATAG+TGG - chr2_4:13766346-13766365 None:intergenic 35.0%
AAATCCTGTAAACTGATGTG+TGG + chr2_4:13766476-13766495 Msa0316610:intron 35.0%
ATTTACCTCCATTATGCGTA+GGG - chr2_4:13766527-13766546 None:intergenic 35.0%
! ACTGCCAAAAGGATTTTGAA+TGG + chr2_4:13766641-13766660 Msa0316610:CDS 35.0%
! CTGCCAAAAGGATTTTGAAT+GGG + chr2_4:13766642-13766661 Msa0316610:CDS 35.0%
! TGTCCCATTCAAAATCCTTT+TGG - chr2_4:13766648-13766667 None:intergenic 35.0%
!! TTCTGAAACTGAGAAGTGAA+TGG + chr2_4:13766861-13766880 Msa0316610:exon 35.0%
GTTTGATCAATGGGAATGAA+AGG - chr2_4:13766905-13766924 None:intergenic 35.0%
!! CAGGCTTTTGTTTGATCAAT+GGG - chr2_4:13766914-13766933 None:intergenic 35.0%
!! ACAGGCTTTTGTTTGATCAA+TGG - chr2_4:13766915-13766934 None:intergenic 35.0%
AAATCGAGTTAGACCATAAG+TGG + chr2_4:13767039-13767058 Msa0316610:three_prime_UTR 35.0%
ATTGAAGTTGTAAACCGACC+AGG - chr2_4:13765876-13765895 None:intergenic 40.0%
TGCTATGTTATCTTGGATGC+AGG + chr2_4:13765956-13765975 Msa0316610:intron 40.0%
GTTATCTTGGATGCAGGATT+CGG + chr2_4:13765962-13765981 Msa0316610:intron 40.0%
TGTAGGTGAAGAAATTGTGG+AGG - chr2_4:13766021-13766040 None:intergenic 40.0%
CAGTGTAGGTGAAGAAATTG+TGG - chr2_4:13766024-13766043 None:intergenic 40.0%
CAGGATTATAACTCTGCTCA+TGG - chr2_4:13766257-13766276 None:intergenic 40.0%
GATAAACACCCGTTAGATGA+TGG + chr2_4:13766306-13766325 Msa0316610:CDS 40.0%
ACTTGTCACCATCATCTAAC+GGG - chr2_4:13766317-13766336 None:intergenic 40.0%
TTGAATAGCCCTACGCATAA+TGG + chr2_4:13766516-13766535 Msa0316610:intron 40.0%
CATTTACCTCCATTATGCGT+AGG - chr2_4:13766528-13766547 None:intergenic 40.0%
! CTACGCATAATGGAGGTAAA+TGG + chr2_4:13766526-13766545 Msa0316610:intron 40.0%
GAGGTAAATGGATGACTAGT+TGG + chr2_4:13766538-13766557 Msa0316610:intron 40.0%
TACATAGCTCAGTGTTTGCA+TGG + chr2_4:13767003-13767022 Msa0316610:three_prime_UTR 40.0%
ATTGAAGTTGTAAACCGACC+AGG - chr2_4:13765876-13765895 None:intergenic 40.0%
TGCTATGTTATCTTGGATGC+AGG + chr2_4:13765956-13765975 Msa0316610:intron 40.0%
GTTATCTTGGATGCAGGATT+CGG + chr2_4:13765962-13765981 Msa0316610:intron 40.0%
TGTAGGTGAAGAAATTGTGG+AGG - chr2_4:13766021-13766040 None:intergenic 40.0%
CAGTGTAGGTGAAGAAATTG+TGG - chr2_4:13766024-13766043 None:intergenic 40.0%
CAGGATTATAACTCTGCTCA+TGG - chr2_4:13766257-13766276 None:intergenic 40.0%
GATAAACACCCGTTAGATGA+TGG + chr2_4:13766306-13766325 Msa0316610:CDS 40.0%
ACTTGTCACCATCATCTAAC+GGG - chr2_4:13766317-13766336 None:intergenic 40.0%
TTGAATAGCCCTACGCATAA+TGG + chr2_4:13766516-13766535 Msa0316610:intron 40.0%
CATTTACCTCCATTATGCGT+AGG - chr2_4:13766528-13766547 None:intergenic 40.0%
! CTACGCATAATGGAGGTAAA+TGG + chr2_4:13766526-13766545 Msa0316610:intron 40.0%
GAGGTAAATGGATGACTAGT+TGG + chr2_4:13766538-13766557 Msa0316610:intron 40.0%
TACATAGCTCAGTGTTTGCA+TGG + chr2_4:13767003-13767022 Msa0316610:three_prime_UTR 40.0%
GGTGTAGCAGGGTAAACATA+AGG - chr2_4:13765762-13765781 None:intergenic 45.0%
! GGATAGCTTTTGTTGGTGCA+TGG - chr2_4:13765783-13765802 None:intergenic 45.0%
GGAGCTCTCAATTATCCACA+CGG + chr2_4:13765826-13765845 Msa0316610:CDS 45.0%
TTTGTTGCATTGCAACCGTG+TGG - chr2_4:13765844-13765863 None:intergenic 45.0%
!! TTTTTGGCAGCCTTTGCTTC+CGG - chr2_4:13765998-13766017 None:intergenic 45.0%
AATCGTTGCTGCTCAACTTG+AGG + chr2_4:13766051-13766070 Msa0316610:CDS 45.0%
AGAGCCACACATCAGTTTAC+AGG - chr2_4:13766483-13766502 None:intergenic 45.0%
AATAGCCCTACGCATAATGG+AGG + chr2_4:13766519-13766538 Msa0316610:intron 45.0%
GAGATCAGCATACTGCCAAA+AGG + chr2_4:13766630-13766649 Msa0316610:CDS 45.0%
!! CTTGAAGCGCCTAGCTTTTA+AGG + chr2_4:13766669-13766688 Msa0316610:CDS 45.0%
TAGCGTTGTCCTCTTGTAGA+TGG + chr2_4:13766786-13766805 Msa0316610:intron 45.0%
AGTCAGTGACCATCTACAAG+AGG - chr2_4:13766798-13766817 None:intergenic 45.0%
ACTCTAACACGAGGCTTATG+AGG + chr2_4:13766815-13766834 Msa0316610:CDS 45.0%
CTCTAACACGAGGCTTATGA+GGG + chr2_4:13766816-13766835 Msa0316610:CDS 45.0%
GCTTATGAGGGATTACGTCT+CGG + chr2_4:13766828-13766847 Msa0316610:CDS 45.0%
CTTCTCAGTTTCAGAACGAC+TGG - chr2_4:13766857-13766876 None:intergenic 45.0%
CGAGTTAGACCATAAGTGGT+TGG + chr2_4:13767043-13767062 Msa0316610:three_prime_UTR 45.0%
GGTGTAGCAGGGTAAACATA+AGG - chr2_4:13765762-13765781 None:intergenic 45.0%
! GGATAGCTTTTGTTGGTGCA+TGG - chr2_4:13765783-13765802 None:intergenic 45.0%
GGAGCTCTCAATTATCCACA+CGG + chr2_4:13765826-13765845 Msa0316610:CDS 45.0%
TTTGTTGCATTGCAACCGTG+TGG - chr2_4:13765844-13765863 None:intergenic 45.0%
!! TTTTTGGCAGCCTTTGCTTC+CGG - chr2_4:13765998-13766017 None:intergenic 45.0%
AATCGTTGCTGCTCAACTTG+AGG + chr2_4:13766051-13766070 Msa0316610:CDS 45.0%
AGAGCCACACATCAGTTTAC+AGG - chr2_4:13766483-13766502 None:intergenic 45.0%
AATAGCCCTACGCATAATGG+AGG + chr2_4:13766519-13766538 Msa0316610:intron 45.0%
GAGATCAGCATACTGCCAAA+AGG + chr2_4:13766630-13766649 Msa0316610:CDS 45.0%
!! CTTGAAGCGCCTAGCTTTTA+AGG + chr2_4:13766669-13766688 Msa0316610:CDS 45.0%
TAGCGTTGTCCTCTTGTAGA+TGG + chr2_4:13766786-13766805 Msa0316610:intron 45.0%
AGTCAGTGACCATCTACAAG+AGG - chr2_4:13766798-13766817 None:intergenic 45.0%
ACTCTAACACGAGGCTTATG+AGG + chr2_4:13766815-13766834 Msa0316610:CDS 45.0%
CTCTAACACGAGGCTTATGA+GGG + chr2_4:13766816-13766835 Msa0316610:CDS 45.0%
GCTTATGAGGGATTACGTCT+CGG + chr2_4:13766828-13766847 Msa0316610:CDS 45.0%
CTTCTCAGTTTCAGAACGAC+TGG - chr2_4:13766857-13766876 None:intergenic 45.0%
TGTTGGTGCATGGTGTAGCA+GGG - chr2_4:13765773-13765792 None:intergenic 50.0%
TTGTTGGTGCATGGTGTAGC+AGG - chr2_4:13765774-13765793 None:intergenic 50.0%
!! AGCTATCCTTTTTGGCCAGC+TGG + chr2_4:13765795-13765814 Msa0316610:CDS 50.0%
AGGATTCGGAGAAGCAACAC+CGG + chr2_4:13765976-13765995 Msa0316610:intron 50.0%
AGAAGCAACACCGGAAGCAA+AGG + chr2_4:13765985-13766004 Msa0316610:CDS 50.0%
!! ACTGATGTGTGGCTCTGACA+TGG + chr2_4:13766487-13766506 Msa0316610:intron 50.0%
!! TGGTCACTGACTCTAACACG+AGG + chr2_4:13766806-13766825 Msa0316610:CDS 50.0%
TGTTGGTGCATGGTGTAGCA+GGG - chr2_4:13765773-13765792 None:intergenic 50.0%
TTGTTGGTGCATGGTGTAGC+AGG - chr2_4:13765774-13765793 None:intergenic 50.0%
!! AGCTATCCTTTTTGGCCAGC+TGG + chr2_4:13765795-13765814 Msa0316610:CDS 50.0%
AGGATTCGGAGAAGCAACAC+CGG + chr2_4:13765976-13765995 Msa0316610:intron 50.0%
AGAAGCAACACCGGAAGCAA+AGG + chr2_4:13765985-13766004 Msa0316610:CDS 50.0%
!! ACTGATGTGTGGCTCTGACA+TGG + chr2_4:13766487-13766506 Msa0316610:intron 50.0%
!! TGGTCACTGACTCTAACACG+AGG + chr2_4:13766806-13766825 Msa0316610:CDS 50.0%
CTCTTGCCAGCTGGCCAAAA+AGG - chr2_4:13765804-13765823 None:intergenic 55.0%
TTTGGCCAGCTGGCAAGAGA+AGG + chr2_4:13765805-13765824 Msa0316610:CDS 55.0%
! GAAAGGGCTTGCTTTGCTGC+AGG - chr2_4:13766888-13766907 None:intergenic 55.0%
TGGCAGAAGACTCACTCGCA+TGG + chr2_4:13766968-13766987 Msa0316610:three_prime_UTR 55.0%
CTCTTGCCAGCTGGCCAAAA+AGG - chr2_4:13765804-13765823 None:intergenic 55.0%
TTTGGCCAGCTGGCAAGAGA+AGG + chr2_4:13765805-13765824 Msa0316610:CDS 55.0%
! GAAAGGGCTTGCTTTGCTGC+AGG - chr2_4:13766888-13766907 None:intergenic 55.0%
TGGCAGAAGACTCACTCGCA+TGG + chr2_4:13766968-13766987 Msa0316610:three_prime_UTR 55.0%
GAGCTCCTTCTCTTGCCAGC+TGG - chr2_4:13765813-13765832 None:intergenic 60.0%
GAGCTCCTTCTCTTGCCAGC+TGG - chr2_4:13765813-13765832 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 13765723 13767065 13765723 ID=Msa0316610;Name=Msa0316610
chr2_4 mRNA 13765723 13767065 13765723 ID=Msa0316610-mRNA-1;Parent=Msa0316610;Name=Msa0316610-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|1|0.83|1|1|1|6|186|173
chr2_4 exon 13765723 13765876 13765723 ID=Msa0316610-mRNA-1:exon:5166;Parent=Msa0316610-mRNA-1
chr2_4 exon 13765978 13766072 13765978 ID=Msa0316610-mRNA-1:exon:5167;Parent=Msa0316610-mRNA-1
chr2_4 exon 13766264 13766381 13766264 ID=Msa0316610-mRNA-1:exon:5168;Parent=Msa0316610-mRNA-1
chr2_4 exon 13766524 13766540 13766524 ID=Msa0316610-mRNA-1:exon:5169;Parent=Msa0316610-mRNA-1
chr2_4 exon 13766628 13766690 13766628 ID=Msa0316610-mRNA-1:exon:5170;Parent=Msa0316610-mRNA-1
chr2_4 exon 13766805 13767065 13766805 ID=Msa0316610-mRNA-1:exon:5171;Parent=Msa0316610-mRNA-1
chr2_4 CDS 13765723 13765876 13765723 ID=Msa0316610-mRNA-1:cds;Parent=Msa0316610-mRNA-1
chr2_4 CDS 13765978 13766072 13765978 ID=Msa0316610-mRNA-1:cds;Parent=Msa0316610-mRNA-1
chr2_4 CDS 13766264 13766381 13766264 ID=Msa0316610-mRNA-1:cds;Parent=Msa0316610-mRNA-1
chr2_4 CDS 13766524 13766540 13766524 ID=Msa0316610-mRNA-1:cds;Parent=Msa0316610-mRNA-1
chr2_4 CDS 13766628 13766690 13766628 ID=Msa0316610-mRNA-1:cds;Parent=Msa0316610-mRNA-1
chr2_4 CDS 13766805 13766879 13766805 ID=Msa0316610-mRNA-1:cds;Parent=Msa0316610-mRNA-1
chr2_4 three_prime_UTR 13766880 13767065 13766880 ID=Msa0316610-mRNA-1:three_prime_utr;Parent=Msa0316610-mRNA-1
Gene Sequence

>Msa0316610

ATGGAATCATCTTCAGCTCTAACACTTTCTCAGCTTCCTTATGTTTACCCTGCTACACCATGCACCAACAAAAGCTATCCTTTTTGGCCAGCTGGCAAGAGAAGGAGCTCTCAATTATCCACACGGTTGCAATGCAACAAAATGTTTGTACCTGGATTCGGAGAAGCAACACCGGAAGCAAAGGCTGCCAAAAACCTCCACAATTTCTTCACCTACACTGCAGTTAAAATCGTTGCTGCTCAACTTGAGAGTTATAATCCTGAAGCATATGTTGAGCTAATGGAATTTGTGGATAAACACCCGTTAGATGATGGTGACAAGTTCTGCGCCACTATGTTCAGAGAATCATCAAGACATAAGAACTTAGCCCTACGCATAATGGAGGTGAGATCAGCATACTGCCAAAAGGATTTTGAATGGGACAACTTGAAGCGCCTAGCTTTTAAGATGGTCACTGACTCTAACACGAGGCTTATGAGGGATTACGTCTCGGAAACCAGTCGTTCTGAAACTGAGAAGTGA

Protein sequence

>Msa0316610

MESSSALTLSQLPYVYPATPCTNKSYPFWPAGKRRSSQLSTRLQCNKMFVPGFGEATPEAKAAKNLHNFFTYTAVKIVAAQLESYNPEAYVELMEFVDKHPLDDGDKFCATMFRESSRHKNLALRIMEVRSAYCQKDFEWDNLKRLAFKMVTDSNTRLMRDYVSETSRSETEK*