Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828300 | XP_003597479.1 | 96.629 | 356 | 6 | 1 | 1 | 350 | 1 | 356 | 0.0 | 699 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828300 | sp|Q04869|YM94_YEAST | 27.138 | 269 | 182 | 7 | 1 | 263 | 1 | 261 | 4.71e-18 | 87.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828300 | G7IHQ8 | 96.629 | 356 | 6 | 1 | 1 | 350 | 1 | 356 | 0.0 | 699 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0620990 | Msa0828300 | 0.825333 | 4.962836e-54 | -8.615850e-47 |
| Msa0709780 | Msa0828300 | 0.813407 | 2.600476e-51 | -8.615850e-47 |
| Msa0828300 | Msa0930780 | 0.802478 | 5.503673e-49 | -8.615850e-47 |
| Msa0828300 | Msa1252190 | 0.813262 | 2.797668e-51 | -8.615850e-47 |
| Msa0828300 | Msa1258710 | 0.802083 | 6.639231e-49 | -8.615850e-47 |
| Msa0828300 | Msa1459380 | 0.813951 | 1.973133e-51 | -8.615850e-47 |
| Msa0223570 | Msa0828300 | 0.930441 | 1.629614e-93 | -8.615850e-47 |
| Msa0434920 | Msa0828300 | 0.807309 | 5.383160e-50 | -8.615850e-47 |
| Msa0263080 | Msa0828300 | 0.805722 | 1.163571e-49 | -8.615850e-47 |
| Msa0264870 | Msa0828300 | 0.882967 | 6.675784e-71 | -8.615850e-47 |
| Msa0340290 | Msa0828300 | 0.931810 | 2.177328e-94 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828300 | MtrunA17_Chr2g0329171 | 96.629 | 356 | 6 | 1 | 1 | 350 | 1 | 356 | 0.0 | 699 |
| Msa0828300 | MtrunA17_Chr8g0342101 | 95.789 | 95 | 4 | 0 | 256 | 350 | 1 | 95 | 6.06e-60 | 188 |
| Msa0828300 | MtrunA17_Chr8g0342111 | 96.429 | 28 | 1 | 0 | 154 | 181 | 1 | 28 | 1.81e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828300 | AT3G20790.1 | 68.466 | 352 | 99 | 4 | 6 | 350 | 9 | 355 | 6.53e-171 | 479 |
Find 90 sgRNAs with CRISPR-Local
Find 354 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTCACTCAAATTGTTAA+AGG | 0.165991 | 5_4:-650623 | Msa0828300:CDS |
| GGGAGGTTTCATTCTTGATA+TGG | 0.259648 | 5_4:-648572 | Msa0828300:CDS |
| AACTGCTGTTCTTGTCGTTT+TGG | 0.282030 | 5_4:-651886 | Msa0828300:CDS |
| TACTCCACTGAAAGGGAAAA+AGG | 0.284785 | 5_4:+647358 | None:intergenic |
| CCAATACAGATCGCGATTCT+AGG | 0.299863 | 5_4:-652107 | Msa0828300:CDS |
| GGAAATGTGGAATCTAAATT+TGG | 0.301322 | 5_4:-651948 | Msa0828300:CDS |
| ATGCTCCTGGGCAAATAATT+TGG | 0.322118 | 5_4:-649272 | Msa0828300:CDS |
| ATGTGATTGGATGAAGTTAT+AGG | 0.324732 | 5_4:-646757 | Msa0828300:three_prime_UTR |
| TGCATTTCATTGCAGGGTTA+AGG | 0.331258 | 5_4:-648546 | Msa0828300:CDS |
| AATGTTTATCCTCAGTCATT+TGG | 0.334582 | 5_4:-647824 | Msa0828300:intron |
| CCAAAAGAAAATGCTAATCT+TGG | 0.359744 | 5_4:-646534 | Msa0828300:three_prime_UTR |
| TCAGTAAGCTAGTACAGAAT+TGG | 0.359875 | 5_4:-652167 | Msa0828300:five_prime_UTR |
| ACCACATGCCTTGGGTGATC+TGG | 0.360498 | 5_4:+647762 | None:intergenic |
| ATGGGTGTGCATTTCATTGC+AGG | 0.364601 | 5_4:-648553 | Msa0828300:CDS |
| TGTTGATACAGGGACAAATT+AGG | 0.370200 | 5_4:-646605 | Msa0828300:three_prime_UTR |
| TCGATTTCTGCTGATGCTCC+TGG | 0.371960 | 5_4:-649285 | Msa0828300:CDS |
| CAAGAATCTAATTACCTTGA+GGG | 0.378715 | 5_4:+647292 | None:intergenic |
| TTAGAGGCAATGCTTGAGTC+TGG | 0.383664 | 5_4:-646958 | Msa0828300:CDS |
| AAGACAGATGATATATTATC+TGG | 0.394396 | 5_4:+647912 | None:intergenic |
| CCTAGAATCGCGATCTGTAT+TGG | 0.394617 | 5_4:+652107 | None:intergenic |
| TGAACTTTGTTTATTTCAAT+CGG | 0.400096 | 5_4:-646483 | Msa0828300:three_prime_UTR |
| GGAGGTTTCATTCTTGATAT+GGG | 0.408876 | 5_4:-648571 | Msa0828300:CDS |
| TGCAACAATCATTACCTTGA+AGG | 0.412787 | 5_4:+650587 | None:intergenic |
| TCCCATGCATCTGTTGATAC+AGG | 0.428646 | 5_4:-646616 | Msa0828300:three_prime_UTR |
| TGGCGAGTCGTTGGCATGAA+TGG | 0.428674 | 5_4:-647615 | Msa0828300:CDS |
| AACGACAAGAACAGCAGTTA+TGG | 0.431554 | 5_4:+651890 | None:intergenic |
| ATCCTCAGTCATTTGGAGAA+TGG | 0.439451 | 5_4:-647817 | Msa0828300:intron |
| GCTGGTAAACATGTCCTTCA+AGG | 0.444302 | 5_4:-650601 | Msa0828300:intron |
| CCAGGTAACCATGTTGTCCT+TGG | 0.464149 | 5_4:+647568 | None:intergenic |
| GAATTGGATTGGATCGAAAT+CGG | 0.464538 | 5_4:-652151 | Msa0828300:five_prime_UTR |
| AGCAGGGAGATCAATGTGAT+TGG | 0.472108 | 5_4:-646770 | Msa0828300:three_prime_UTR |
| ACAAAAGAGAGGCGATGCTC+AGG | 0.477335 | 5_4:+647006 | None:intergenic |
| ATCATGAGTTCGACTCCAAA+TGG | 0.477980 | 5_4:+652013 | None:intergenic |
| CGGACTTGTTCATCTTCACT+TGG | 0.487356 | 5_4:+646800 | None:intergenic |
| AAGAAACTAATTGCTGACCT+TGG | 0.488102 | 5_4:-649136 | Msa0828300:CDS |
| CAAAAGAAAATGCTAATCTT+GGG | 0.491327 | 5_4:-646533 | Msa0828300:three_prime_UTR |
| TGTGAGATCTCCGAGAGTCT+TGG | 0.491599 | 5_4:+652053 | None:intergenic |
| AGAAACTAATTGCTGACCTT+GGG | 0.508482 | 5_4:-649135 | Msa0828300:CDS |
| AACAAGTCCGTGGATCAAGC+AGG | 0.508796 | 5_4:-646787 | Msa0828300:three_prime_UTR |
| AGAAACAAATACCTCAACTA+AGG | 0.508827 | 5_4:+649218 | None:intergenic |
| TCAAGTACTCAAAGCGTGTC+AGG | 0.509788 | 5_4:+646453 | None:intergenic |
| TCACTCAAATTGTTAAAGGC+TGG | 0.510501 | 5_4:-650619 | Msa0828300:CDS |
| CCAAGGACAACATGGTTACC+TGG | 0.511081 | 5_4:-647568 | Msa0828300:intron |
| GCTTGAGTCTGGATCAAAGC+AGG | 0.513242 | 5_4:-646947 | Msa0828300:CDS |
| TATATTATCTGGCGGTGGTA+AGG | 0.516675 | 5_4:+647923 | None:intergenic |
| TCCCTGTATCAACAGATGCA+TGG | 0.516967 | 5_4:+646614 | None:intergenic |
| GGAATCCACGCTCAATCTGA+AGG | 0.518597 | 5_4:+647589 | None:intergenic |
| AAGCTAGTACAGAATTGGAT+TGG | 0.520878 | 5_4:-652162 | Msa0828300:five_prime_UTR |
| TACTGCAGGTATAACTGAGC+TGG | 0.521091 | 5_4:-649331 | Msa0828300:intron |
| AGTGTGCAAGTTATTATAGA+AGG | 0.522861 | 5_4:-649103 | Msa0828300:CDS |
| CATTTATTGAAATTTATGAC+TGG | 0.523498 | 5_4:-646725 | Msa0828300:three_prime_UTR |
| CCCTGTATCAACAGATGCAT+GGG | 0.523743 | 5_4:+646615 | None:intergenic |
| GAATCTAAATTTGGAGATAA+CGG | 0.525100 | 5_4:-651939 | Msa0828300:CDS |
| ATTTCATTATATGATGCTCA+TGG | 0.528500 | 5_4:-647395 | Msa0828300:CDS |
| CGATTTCTGCTGATGCTCCT+GGG | 0.530286 | 5_4:-649284 | Msa0828300:CDS |
| CAGATTGAGCGTGGATTCCA+AGG | 0.533748 | 5_4:-647585 | Msa0828300:CDS |
| CTTCAGTTACTCCACTGAAA+GGG | 0.534240 | 5_4:+647351 | None:intergenic |
| TAGATCTTGTGGCGAGTCGT+TGG | 0.542383 | 5_4:-647624 | Msa0828300:CDS |
| TCATTTGGAGAATGGATGCT+CGG | 0.542787 | 5_4:-647809 | Msa0828300:CDS |
| TCTTCAGTTACTCCACTGAA+AGG | 0.550039 | 5_4:+647350 | None:intergenic |
| TGAACACATTATAGATCTTG+TGG | 0.550569 | 5_4:-647635 | Msa0828300:intron |
| ACAAATACCTCAACTAAGGC+AGG | 0.553907 | 5_4:+649222 | None:intergenic |
| CCCATGCATCTGTTGATACA+GGG | 0.555572 | 5_4:-646615 | Msa0828300:three_prime_UTR |
| ACAGACCAAATTATTTGCCC+AGG | 0.558393 | 5_4:+649267 | None:intergenic |
| CATTTGGAGAATGGATGCTC+GGG | 0.559246 | 5_4:-647808 | Msa0828300:CDS |
| CGTGGATTCCAAGGACAACA+TGG | 0.570880 | 5_4:-647576 | Msa0828300:CDS |
| TGGGTGTGCATTTCATTGCA+GGG | 0.573946 | 5_4:-648552 | Msa0828300:CDS |
| TTTCATTGCAGGGTTAAGGA+TGG | 0.576994 | 5_4:-648542 | Msa0828300:intron |
| TCAATACCTTCCAAGACTCT+CGG | 0.581013 | 5_4:-652063 | Msa0828300:CDS |
| CAGATCGCGATTCTAGGAGC+AGG | 0.582695 | 5_4:-652101 | Msa0828300:CDS |
| TGATCTCCCTGCTTGATCCA+CGG | 0.585160 | 5_4:+646780 | None:intergenic |
| TTCAGCTATGACATCTCATG+TGG | 0.585284 | 5_4:-647952 | Msa0828300:CDS |
| GATGATATATTATCTGGCGG+TGG | 0.593534 | 5_4:+647918 | None:intergenic |
| ACATGCCTTGGGTGATCTGG+AGG | 0.596307 | 5_4:+647765 | None:intergenic |
| GGAACCCTTCAGATTGAGCG+TGG | 0.602295 | 5_4:-647594 | Msa0828300:CDS |
| GAATCCACGCTCAATCTGAA+GGG | 0.610146 | 5_4:+647590 | None:intergenic |
| TCGACAGCTTGTTGGATGTG+AGG | 0.615898 | 5_4:-647985 | Msa0828300:intron |
| CTGAAACTTCTAATATCTCG+AGG | 0.616297 | 5_4:-646683 | Msa0828300:three_prime_UTR |
| TCGGTTGATAACAATAACAA+TGG | 0.618788 | 5_4:-652132 | Msa0828300:exon |
| TGGGCAAATAATTTGGTCTG+TGG | 0.621983 | 5_4:-649265 | Msa0828300:CDS |
| TGTCTCCTCCAGATCACCCA+AGG | 0.629643 | 5_4:-647770 | Msa0828300:intron |
| CTTGAGTCTGGATCAAAGCA+GGG | 0.629895 | 5_4:-646946 | Msa0828300:CDS |
| ACAGCTTGTTGGATGTGAGG+TGG | 0.631292 | 5_4:-647982 | Msa0828300:intron |
| ATGCTCGGGAGTATTTGTAA+TGG | 0.634118 | 5_4:-647794 | Msa0828300:CDS |
| TCGCACCCTCGACAAAAGAG+AGG | 0.637493 | 5_4:+646995 | None:intergenic |
| ACAAGTCCGTGGATCAAGCA+GGG | 0.646178 | 5_4:-646786 | Msa0828300:three_prime_UTR |
| TGTTTCTGAAAACACCCTCA+AGG | 0.651558 | 5_4:-647306 | Msa0828300:intron |
| AGATCTCCGAGAGTCTTGGA+AGG | 0.674115 | 5_4:+652057 | None:intergenic |
| AGTGAAGATGAACAAGTCCG+TGG | 0.687379 | 5_4:-646797 | Msa0828300:three_prime_UTR |
| ACAGATGATATATTATCTGG+CGG | 0.689783 | 5_4:+647915 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAATAATGACATTAAAT+TGG | + | chr5_4:647486-647505 | None:intergenic | 10.0% |
| !!! | TTTGAATTTTCTTTAATTTT+AGG | - | chr5_4:647648-647667 | Msa0828300:intron | 10.0% |
| !!! | TTGAATTTTCTTTAATTTTA+GGG | - | chr5_4:647649-647668 | Msa0828300:intron | 10.0% |
| !!! | TATAAATCATTTTTCTTTTA+TGG | - | chr5_4:648358-648377 | Msa0828300:intron | 10.0% |
| !! | GAATAAATACAAGTTATTAA+TGG | + | chr5_4:646850-646869 | None:intergenic | 15.0% |
| !!! | ATCTTTTATTTACGTTATTT+TGG | + | chr5_4:646916-646935 | None:intergenic | 15.0% |
| !!! | TTTTTTTCAATTAAGATTAG+AGG | - | chr5_4:647243-647262 | Msa0828300:intron | 15.0% |
| !!! | TTTTTTCAATTAAGATTAGA+GGG | - | chr5_4:647244-647263 | Msa0828300:intron | 15.0% |
| !! | ATAAATTATAAGCTCAAAAA+TGG | - | chr5_4:647415-647434 | Msa0828300:intron | 15.0% |
| !! | TAAATTATAAGCTCAAAAAT+GGG | - | chr5_4:647416-647435 | Msa0828300:intron | 15.0% |
| !!! | TACAATTTTAAGGATTAAAT+TGG | - | chr5_4:647607-647626 | Msa0828300:CDS | 15.0% |
| !! | TAATTAATCAAATATATAGC+TGG | - | chr5_4:647722-647741 | Msa0828300:intron | 15.0% |
| !!! | AAGAAAGAAATATTTGAAAT+AGG | - | chr5_4:648801-648820 | Msa0828300:intron | 15.0% |
| !!! | AGAAAGAAATATTTGAAATA+GGG | - | chr5_4:648802-648821 | Msa0828300:intron | 15.0% |
| !! | AAAAATAATACCTTAACATA+AGG | + | chr5_4:650062-650081 | None:intergenic | 15.0% |
| !! | ATATTAGAAACTTAGTAATT+AGG | - | chr5_4:650614-650633 | Msa0828300:CDS | 15.0% |
| !!! | GTTTTCATAAATAATATCTT+AGG | - | chr5_4:651144-651163 | Msa0828300:intron | 15.0% |
| !! | TATATAATTGAGAATAAGAA+AGG | + | chr5_4:651478-651497 | None:intergenic | 15.0% |
| !!! | GTAGATTCTTTTTTTTTTTT+TGG | + | chr5_4:651836-651855 | None:intergenic | 15.0% |
| !!! | TTTTTCAATTAAGATTAGAG+GGG | - | chr5_4:647245-647264 | Msa0828300:intron | 20.0% |
| !!! | TTACTTTTATTAGCTTATAG+TGG | + | chr5_4:647327-647346 | None:intergenic | 20.0% |
| !!! | TTGACTAATAAAGACATTTT+TGG | + | chr5_4:647380-647399 | None:intergenic | 20.0% |
| !! | TTAAATTGGTTATTTACTTG+CGG | - | chr5_4:647621-647640 | Msa0828300:CDS | 20.0% |
| !!! | TTTTTTCCCAATAAAGTTTA+GGG | + | chr5_4:647942-647961 | None:intergenic | 20.0% |
| !! | TGACTAAATTTCTCTTTATT+TGG | - | chr5_4:648220-648239 | Msa0828300:intron | 20.0% |
| !! | CTATATTGCTAACTTAATTT+AGG | - | chr5_4:648468-648487 | Msa0828300:intron | 20.0% |
| !! | TAAGAAAAAGTTTCTACATT+TGG | - | chr5_4:648943-648962 | Msa0828300:intron | 20.0% |
| !! | GACAAAATAAATTATGTGAA+TGG | + | chr5_4:649504-649523 | None:intergenic | 20.0% |
| !!! | TTCACATAATTTATTTTGTC+AGG | - | chr5_4:649504-649523 | Msa0828300:intron | 20.0% |
| !!! | TCACATAATTTATTTTGTCA+GGG | - | chr5_4:649505-649524 | Msa0828300:intron | 20.0% |
| !! | TTTATGTATTTCCTTATATC+TGG | - | chr5_4:649937-649956 | Msa0828300:intron | 20.0% |
| !! | CAAAAGATGAAAAGAATTAA+TGG | - | chr5_4:650558-650577 | Msa0828300:intron | 20.0% |
| !! | TTACTAAGTTTCTAATATAG+AGG | + | chr5_4:650612-650631 | None:intergenic | 20.0% |
| !! | TCATAAATAATATCTTAGGT+AGG | - | chr5_4:651148-651167 | Msa0828300:intron | 20.0% |
| !! | TCATATCACATAATAGTTAA+TGG | - | chr5_4:651533-651552 | Msa0828300:intron | 20.0% |
| !!! | CTTTTTTTTTTTTTGGAACT+CGG | + | chr5_4:651829-651848 | None:intergenic | 20.0% |
| !! | CATTTATTGAAATTTATGAC+TGG | - | chr5_4:651940-651959 | Msa0828300:CDS | 20.0% |
| !!! | TGAACTTTGTTTATTTCAAT+CGG | - | chr5_4:652182-652201 | Msa0828300:five_prime_UTR | 20.0% |
| !! | TTTTCAATCTCAAATCCATT+TGG | - | chr5_4:646637-646656 | Msa0828300:three_prime_UTR | 25.0% |
| !! | CAAATTGCTAACAAACTTTT+TGG | - | chr5_4:646693-646712 | Msa0828300:three_prime_UTR | 25.0% |
| ! | GAATCTAAATTTGGAGATAA+CGG | - | chr5_4:646726-646745 | Msa0828300:three_prime_UTR | 25.0% |
| !! | AAATCGTTATCTGAAATTGT+AGG | - | chr5_4:646944-646963 | Msa0828300:CDS | 25.0% |
| !!! | TTTGAGTAAATAACTTGTTC+TGG | - | chr5_4:646994-647013 | Msa0828300:CDS | 25.0% |
| ! | GGTAAAAAAATAGTGAATAG+CGG | - | chr5_4:647078-647097 | Msa0828300:intron | 25.0% |
| ! | GTAAAAAAATAGTGAATAGC+GGG | - | chr5_4:647079-647098 | Msa0828300:intron | 25.0% |
| !! | GAGGATAAATTTGAAACTAA+GGG | + | chr5_4:647456-647475 | None:intergenic | 25.0% |
| ! | GTCATTCCAAATACTAATAA+AGG | - | chr5_4:647506-647525 | Msa0828300:intron | 25.0% |
| ! | TTCGTACCTTTATTAGTATT+TGG | + | chr5_4:647515-647534 | None:intergenic | 25.0% |
| !! | ATTAACATTTTGCAATTCCA+GGG | - | chr5_4:647539-647558 | Msa0828300:intron | 25.0% |
| !!! | ACTAGGTTGATACAATTTTA+AGG | - | chr5_4:647597-647616 | Msa0828300:CDS | 25.0% |
| ! | ATTGTAAAATAGTGTCAACT+TGG | + | chr5_4:647676-647695 | None:intergenic | 25.0% |
| !! | GACACTATTTTACAATTTGA+AGG | - | chr5_4:647680-647699 | Msa0828300:intron | 25.0% |
| !!! | CTTTTTTCCCAATAAAGTTT+AGG | + | chr5_4:647943-647962 | None:intergenic | 25.0% |
| ! | AACAAATTATCAATTCTTGC+AGG | - | chr5_4:648015-648034 | Msa0828300:intron | 25.0% |
| ! | ATAAAGAGAAATTTAGTCAG+TGG | + | chr5_4:648219-648238 | None:intergenic | 25.0% |
| ! | TAATAGAATCTTAGAAGCTA+GGG | + | chr5_4:648505-648524 | None:intergenic | 25.0% |
| ! | TTAATAGAATCTTAGAAGCT+AGG | + | chr5_4:648506-648525 | None:intergenic | 25.0% |
| ! | CCTCAAATATCTTCTTAATT+AGG | + | chr5_4:648529-648548 | None:intergenic | 25.0% |
| ! | CCTAATTAAGAAGATATTTG+AGG | - | chr5_4:648526-648545 | Msa0828300:intron | 25.0% |
| ! | AACGCTAAATACTTATCTAT+TGG | - | chr5_4:648642-648661 | Msa0828300:intron | 25.0% |
| ! | TCATTACATATAAGTGAGAT+GGG | + | chr5_4:649153-649172 | None:intergenic | 25.0% |
| ! | TTCATTACATATAAGTGAGA+TGG | + | chr5_4:649154-649173 | None:intergenic | 25.0% |
| ! | TCTCACTTATATGTAATGAA+AGG | - | chr5_4:649154-649173 | Msa0828300:intron | 25.0% |
| ! | AAAGTTATCAATGTGATAGA+GGG | + | chr5_4:649217-649236 | None:intergenic | 25.0% |
| ! | ATATATTAATCTGATACTGC+AGG | - | chr5_4:649320-649339 | Msa0828300:CDS | 25.0% |
| !! | ATCTGTATTTGTTTAAGTTC+AGG | - | chr5_4:649667-649686 | Msa0828300:intron | 25.0% |
| !! | TCTGTATTTGTTTAAGTTCA+GGG | - | chr5_4:649668-649687 | Msa0828300:intron | 25.0% |
| ! | TATTCTGGCATAAAAATGAA+GGG | - | chr5_4:649731-649750 | Msa0828300:intron | 25.0% |
| !! | TTCATAATGTTTGTGGTTTT+AGG | + | chr5_4:649798-649817 | None:intergenic | 25.0% |
| ! | CTTTACTTTCATAATGTTTG+TGG | + | chr5_4:649805-649824 | None:intergenic | 25.0% |
| !! | TGTTTTCTCTTAACAGTATT+TGG | - | chr5_4:650034-650053 | Msa0828300:intron | 25.0% |
| !!! | AAGGTATTATTTTTCCTTTC+TGG | - | chr5_4:650068-650087 | Msa0828300:intron | 25.0% |
| !! | TGATAAATGCTGATTATCTT+TGG | - | chr5_4:650236-650255 | Msa0828300:intron | 25.0% |
| ! | TTCCATACTCAAGTTTATTT+CGG | + | chr5_4:650356-650375 | None:intergenic | 25.0% |
| ! | ACTTCTATACAATGATTTGA+TGG | - | chr5_4:650641-650660 | Msa0828300:intron | 25.0% |
| ! | AAGACAGATGATATATTATC+TGG | + | chr5_4:650756-650775 | None:intergenic | 25.0% |
| !!! | AAGTTATTTCTGGAAAATAG+AGG | + | chr5_4:650784-650803 | None:intergenic | 25.0% |
| !! | AGTGTTTGTAAAGTTATTTC+TGG | + | chr5_4:650794-650813 | None:intergenic | 25.0% |
| ! | TGAAGTAATTGCAAATTAAG+TGG | + | chr5_4:651196-651215 | None:intergenic | 25.0% |
| ! | TCAGATAGTAATGAAGATAA+CGG | + | chr5_4:651232-651251 | None:intergenic | 25.0% |
| ! | ATTTCATTATATGATGCTCA+TGG | - | chr5_4:651270-651289 | Msa0828300:intron | 25.0% |
| ! | AAAAAAAAAACAGTTCATGC+TGG | - | chr5_4:651587-651606 | Msa0828300:intron | 25.0% |
| ! | AAAAAAAAACAGTTCATGCT+GGG | - | chr5_4:651588-651607 | Msa0828300:intron | 25.0% |
| ! | TATGTAGATATTGAATGAAG+AGG | + | chr5_4:651798-651817 | None:intergenic | 25.0% |
| !! | TCATATTTTCTTTTACTGCA+CGG | - | chr5_4:652088-652107 | Msa0828300:CDS | 25.0% |
| !! | CAAGATTAGCATTTTCTTTT+GGG | + | chr5_4:652133-652152 | None:intergenic | 25.0% |
| ! | CAAAAGAAAATGCTAATCTT+GGG | - | chr5_4:652132-652151 | Msa0828300:exon | 25.0% |
| !! | TCGGTTGATAACAATAACAA+TGG | - | chr5_4:646533-646552 | Msa0828300:three_prime_UTR | 30.0% |
| ! | ATTGCTAACAAACTTTTTGG+TGG | - | chr5_4:646696-646715 | Msa0828300:three_prime_UTR | 30.0% |
| GGAAATGTGGAATCTAAATT+TGG | - | chr5_4:646717-646736 | Msa0828300:three_prime_UTR | 30.0% | |
| TCTCTTTCAAAACTCATCAT+TGG | - | chr5_4:646820-646839 | Msa0828300:intron | 30.0% | |
| TGAAGATACATCTAGATAGA+GGG | + | chr5_4:647044-647063 | None:intergenic | 30.0% | |
| ATCTAGATGTATCTTCACTA+AGG | - | chr5_4:647047-647066 | Msa0828300:intron | 30.0% | |
| TGATAAGCTTAGCTTATATC+AGG | - | chr5_4:647121-647140 | Msa0828300:intron | 30.0% | |
| TATATCAGGTGAGCTTATAA+TGG | - | chr5_4:647135-647154 | Msa0828300:intron | 30.0% | |
| !! | CTTATAATGGATAGGTGATA+GGG | - | chr5_4:647148-647167 | Msa0828300:intron | 30.0% |
| ! | CGAGGATAAATTTGAAACTA+AGG | + | chr5_4:647457-647476 | None:intergenic | 30.0% |
| !! | ACATTAAATTGGTAATGTCG+AGG | + | chr5_4:647475-647494 | None:intergenic | 30.0% |
| ! | GATTAACATTTTGCAATTCC+AGG | - | chr5_4:647538-647557 | Msa0828300:intron | 30.0% |
| CATGATTTAAAAATGATCCC+TGG | + | chr5_4:647559-647578 | None:intergenic | 30.0% | |
| !! | CAGGGATCATTTTTAAATCA+TGG | - | chr5_4:647557-647576 | Msa0828300:intron | 30.0% |
| TATTGGGAAAAAAGAGTCAT+TGG | - | chr5_4:647949-647968 | Msa0828300:CDS | 30.0% | |
| !!! | ATTGGAATCATGTTTTTTGC+TGG | - | chr5_4:647967-647986 | Msa0828300:CDS | 30.0% |
| !! | TTTGCTGGAGTTTATTTTTC+AGG | - | chr5_4:647982-648001 | Msa0828300:intron | 30.0% |
| CATCTCACTCAAATTGTTAA+AGG | - | chr5_4:648042-648061 | Msa0828300:intron | 30.0% | |
| GTAACAAATGTCAATACAGT+AGG | + | chr5_4:648167-648186 | None:intergenic | 30.0% | |
| TTTGGATGTATTGTATGCAT+TGG | - | chr5_4:648238-648257 | Msa0828300:intron | 30.0% | |
| TTGGATGTATTGTATGCATT+GGG | - | chr5_4:648239-648258 | Msa0828300:intron | 30.0% | |
| !!! | TCTTGTTTTTGCATGATTCT+AGG | - | chr5_4:648401-648420 | Msa0828300:intron | 30.0% |
| ACCTTGTCAGTAAAAAAAAG+TGG | + | chr5_4:648709-648728 | None:intergenic | 30.0% | |
| !! | CTCTTTCGTGTTATTTCAAA+GGG | + | chr5_4:649007-649026 | None:intergenic | 30.0% |
| !! | CTTTGAAATAACACGAAAGA+GGG | - | chr5_4:649006-649025 | Msa0828300:intron | 30.0% |
| AAGTCACTACTAAGTATCAT+CGG | + | chr5_4:649180-649199 | None:intergenic | 30.0% | |
| GAAAGTTATCAATGTGATAG+AGG | + | chr5_4:649218-649237 | None:intergenic | 30.0% | |
| TTATTTGCCTCTCTATTAGA+TGG | - | chr5_4:649258-649277 | Msa0828300:CDS | 30.0% | |
| ! | TACGCTAAGAGTTTAGAATA+GGG | + | chr5_4:649297-649316 | None:intergenic | 30.0% |
| ! | TTACGCTAAGAGTTTAGAAT+AGG | + | chr5_4:649298-649317 | None:intergenic | 30.0% |
| AGAAACAAATACCTCAACTA+AGG | + | chr5_4:649450-649469 | None:intergenic | 30.0% | |
| !! | GACATTTTAACCTATGAATC+TGG | - | chr5_4:649474-649493 | Msa0828300:intron | 30.0% |
| AGTGTGCAAGTTATTATAGA+AGG | - | chr5_4:649562-649581 | Msa0828300:intron | 30.0% | |
| TCCAAGAGCTTGAAAAATAA+GGG | + | chr5_4:649606-649625 | None:intergenic | 30.0% | |
| ! | CTGTATTTGTTTAAGTTCAG+GGG | - | chr5_4:649669-649688 | Msa0828300:intron | 30.0% |
| CTTAATCAACTCTACTATTC+TGG | - | chr5_4:649716-649735 | Msa0828300:intron | 30.0% | |
| CTATTCTGGCATAAAAATGA+AGG | - | chr5_4:649730-649749 | Msa0828300:intron | 30.0% | |
| ATTCTGGCATAAAAATGAAG+GGG | - | chr5_4:649732-649751 | Msa0828300:intron | 30.0% | |
| !!! | TCCTTTTAGTTTAGATGACA+TGG | - | chr5_4:649858-649877 | Msa0828300:intron | 30.0% |
| TGCTAGTATAACCAGATATA+AGG | + | chr5_4:649951-649970 | None:intergenic | 30.0% | |
| ! | AACTTTTGTGCTACATGTAA+GGG | + | chr5_4:650008-650027 | None:intergenic | 30.0% |
| ! | AAACTTTTGTGCTACATGTA+AGG | + | chr5_4:650009-650028 | None:intergenic | 30.0% |
| ! | GTATTTGGTTCCTTATGTTA+AGG | - | chr5_4:650049-650068 | Msa0828300:intron | 30.0% |
| !! | TATTATTTTTCCTTTCTGGC+AGG | - | chr5_4:650072-650091 | Msa0828300:intron | 30.0% |
| !! | ATTATTTTTCCTTTCTGGCA+GGG | - | chr5_4:650073-650092 | Msa0828300:intron | 30.0% |
| ! | GTATTTTGTTGCGCAATTTA+TGG | - | chr5_4:650210-650229 | Msa0828300:intron | 30.0% |
| TTATCTTTGGTCTAATCAAC+TGG | - | chr5_4:650249-650268 | Msa0828300:intron | 30.0% | |
| TATCTTTGGTCTAATCAACT+GGG | - | chr5_4:650250-650269 | Msa0828300:intron | 30.0% | |
| ! | ATAGAGAACTGCTTTCATTT+TGG | - | chr5_4:650459-650478 | Msa0828300:intron | 30.0% |
| !!! | TTTCATCTTTTGACTTCCTA+AGG | + | chr5_4:650550-650569 | None:intergenic | 30.0% |
| TCTATACAATGATTTGATGG+TGG | - | chr5_4:650644-650663 | Msa0828300:intron | 30.0% | |
| ACAGATGATATATTATCTGG+CGG | + | chr5_4:650753-650772 | None:intergenic | 30.0% | |
| ! | CAACAATATTTTCAGACTTC+CGG | + | chr5_4:650820-650839 | None:intergenic | 30.0% |
| AATGTTTATCCTCAGTCATT+TGG | - | chr5_4:650841-650860 | Msa0828300:intron | 30.0% | |
| TATGAGCATATCTACTGTTT+GGG | + | chr5_4:650971-650990 | None:intergenic | 30.0% | |
| TTATGAGCATATCTACTGTT+TGG | + | chr5_4:650972-650991 | None:intergenic | 30.0% | |
| ! | TTCTTGCAAGTTTTTACTCA+TGG | - | chr5_4:651004-651023 | Msa0828300:intron | 30.0% |
| TGAACACATTATAGATCTTG+TGG | - | chr5_4:651030-651049 | Msa0828300:intron | 30.0% | |
| TGTACTATAGTTACAGTTAC+AGG | - | chr5_4:651122-651141 | Msa0828300:intron | 30.0% | |
| GCAAATTAAGTGGATATTGA+AGG | + | chr5_4:651186-651205 | None:intergenic | 30.0% | |
| CAAGAATCTAATTACCTTGA+GGG | + | chr5_4:651376-651395 | None:intergenic | 30.0% | |
| TATAGACGAGGAATTTGTAA+TGG | + | chr5_4:651438-651457 | None:intergenic | 30.0% | |
| ! | TTTTCTGAATCAACTGTTTG+TGG | + | chr5_4:651511-651530 | None:intergenic | 30.0% |
| ! | GTTCATGTGAAAAAGTTTTG+AGG | - | chr5_4:651749-651768 | Msa0828300:intron | 30.0% |
| TAATCATAGAACTCTTTGCA+TGG | - | chr5_4:651772-651791 | Msa0828300:intron | 30.0% | |
| ATGTGATTGGATGAAGTTAT+AGG | - | chr5_4:651908-651927 | Msa0828300:CDS | 30.0% | |
| ! | CCAAGATTAGCATTTTCTTT+TGG | + | chr5_4:652134-652153 | None:intergenic | 30.0% |
| CCAAAAGAAAATGCTAATCT+TGG | - | chr5_4:652131-652150 | Msa0828300:exon | 30.0% | |
| TCAGTAAGCTAGTACAGAAT+TGG | - | chr5_4:646498-646517 | Msa0828300:three_prime_UTR | 35.0% | |
| AAGCTAGTACAGAATTGGAT+TGG | - | chr5_4:646503-646522 | Msa0828300:three_prime_UTR | 35.0% | |
| ! | GAATTGGATTGGATCGAAAT+CGG | - | chr5_4:646514-646533 | Msa0828300:three_prime_UTR | 35.0% |
| !! | CAAACTTTTTGGTGGAAATG+TGG | - | chr5_4:646704-646723 | Msa0828300:three_prime_UTR | 35.0% |
| GTGAAGATACATCTAGATAG+AGG | + | chr5_4:647045-647064 | None:intergenic | 35.0% | |
| ATCTTCACTAAGGTTCTGTT+TGG | - | chr5_4:647057-647076 | Msa0828300:intron | 35.0% | |
| !! | GCTTATAATGGATAGGTGAT+AGG | - | chr5_4:647147-647166 | Msa0828300:intron | 35.0% |
| ! | TTTGAAACTAAGGGTCTGTT+TGG | + | chr5_4:647447-647466 | None:intergenic | 35.0% |
| TAGAGTCATTGAAACTCCAA+GGG | - | chr5_4:647762-647781 | Msa0828300:intron | 35.0% | |
| AATACCTATCTAAGTGCTCT+TGG | - | chr5_4:647871-647890 | Msa0828300:intron | 35.0% | |
| TCACTCAAATTGTTAAAGGC+TGG | - | chr5_4:648046-648065 | Msa0828300:intron | 35.0% | |
| TGCAACAATCATTACCTTGA+AGG | + | chr5_4:648081-648100 | None:intergenic | 35.0% | |
| TACAGTAGGATAATGAGTAG+TGG | + | chr5_4:648153-648172 | None:intergenic | 35.0% | |
| TGGATGTATTGTATGCATTG+GGG | - | chr5_4:648240-648259 | Msa0828300:intron | 35.0% | |
| !!! | GCCACTTTTTTTTACTGACA+AGG | - | chr5_4:648705-648724 | Msa0828300:intron | 35.0% |
| !! | AAATGTTAACTTGTGCCCTT+GGG | + | chr5_4:648984-649003 | None:intergenic | 35.0% |
| !! | CCTCTTTCGTGTTATTTCAA+AGG | + | chr5_4:649008-649027 | None:intergenic | 35.0% |
| !! | CCTTTGAAATAACACGAAAG+AGG | - | chr5_4:649005-649024 | Msa0828300:intron | 35.0% |
| ATGATTGCTACAAATAGGCT+TGG | + | chr5_4:649065-649084 | None:intergenic | 35.0% | |
| GACTCATGATTGCTACAAAT+AGG | + | chr5_4:649070-649089 | None:intergenic | 35.0% | |
| TGGATTATGGAATTTCAGCA+GGG | - | chr5_4:649112-649131 | Msa0828300:CDS | 35.0% | |
| TACATATAAGTGAGATGGGA+TGG | + | chr5_4:649149-649168 | None:intergenic | 35.0% | |
| GATGATACTTAGTAGTGACT+TGG | - | chr5_4:649179-649198 | Msa0828300:intron | 35.0% | |
| CAACTTTCCATCTAATAGAG+AGG | + | chr5_4:649268-649287 | None:intergenic | 35.0% | |
| AAGAAACTAATTGCTGACCT+TGG | - | chr5_4:649529-649548 | Msa0828300:intron | 35.0% | |
| AGAAACTAATTGCTGACCTT+GGG | - | chr5_4:649530-649549 | Msa0828300:intron | 35.0% | |
| !!! | ACCCTTATTTTTCAAGCTCT+TGG | - | chr5_4:649602-649621 | Msa0828300:intron | 35.0% |
| CTCCAAGAGCTTGAAAAATA+AGG | + | chr5_4:649607-649626 | None:intergenic | 35.0% | |
| !!! | CTTATTTTTCAAGCTCTTGG+AGG | - | chr5_4:649605-649624 | Msa0828300:intron | 35.0% |
| GCCATGTCATCTAAACTAAA+AGG | + | chr5_4:649862-649881 | None:intergenic | 35.0% | |
| CATTCACTTTCAGTTCATCA+CGG | - | chr5_4:649913-649932 | Msa0828300:intron | 35.0% | |
| GGAGGTTTCATTCTTGATAT+GGG | - | chr5_4:650094-650113 | Msa0828300:intron | 35.0% | |
| TGCCGAAATAAACTTGAGTA+TGG | - | chr5_4:650351-650370 | Msa0828300:intron | 35.0% | |
| CGTTTAAATCAGACAAGCAA+TGG | + | chr5_4:650382-650401 | None:intergenic | 35.0% | |
| TTGAAATGTTTCTCACCTCA+TGG | - | chr5_4:650421-650440 | Msa0828300:intron | 35.0% | |
| CACAATTTATGCATTCCATG+AGG | + | chr5_4:650439-650458 | None:intergenic | 35.0% | |
| !! | TTCATTTTGGCACCAATTTG+AGG | - | chr5_4:650472-650491 | Msa0828300:intron | 35.0% |
| ATGAAATTTCCTGTCTCCTT+AGG | - | chr5_4:650531-650550 | Msa0828300:intron | 35.0% | |
| TAACTTTACAAACACTCGAC+CGG | - | chr5_4:650798-650817 | Msa0828300:intron | 35.0% | |
| CGGAAGTCTGAAAATATTGT+TGG | - | chr5_4:650818-650837 | Msa0828300:intron | 35.0% | |
| CTGTAACTATAGTACATACC+AGG | + | chr5_4:651118-651137 | None:intergenic | 35.0% | |
| TGGATATTGAAGGAAAAGCT+CGG | + | chr5_4:651176-651195 | None:intergenic | 35.0% | |
| GCAAGAATCTAATTACCTTG+AGG | + | chr5_4:651377-651396 | None:intergenic | 35.0% | |
| GATGAACAAAGATATAGACG+AGG | + | chr5_4:651450-651469 | None:intergenic | 35.0% | |
| TCAACTGTTTGTGGTAAGTT+TGG | + | chr5_4:651502-651521 | None:intergenic | 35.0% | |
| ! | ATTCACTTCCATTTTGCAGA+AGG | - | chr5_4:651628-651647 | Msa0828300:intron | 35.0% |
| ! | TTCACTTCCATTTTGCAGAA+GGG | - | chr5_4:651629-651648 | Msa0828300:intron | 35.0% |
| CTGAAACTTCTAATATCTCG+AGG | - | chr5_4:651982-652001 | Msa0828300:CDS | 35.0% | |
| TGTTGATACAGGGACAAATT+AGG | - | chr5_4:652060-652079 | Msa0828300:CDS | 35.0% | |
| TCAATACCTTCCAAGACTCT+CGG | - | chr5_4:646602-646621 | Msa0828300:three_prime_UTR | 40.0% | |
| ATCATGAGTTCGACTCCAAA+TGG | + | chr5_4:646655-646674 | None:intergenic | 40.0% | |
| AACGACAAGAACAGCAGTTA+TGG | + | chr5_4:646778-646797 | None:intergenic | 40.0% | |
| !! | AACTGCTGTTCTTGTCGTTT+TGG | - | chr5_4:646779-646798 | Msa0828300:three_prime_UTR | 40.0% |
| !! | CAGGTGAGCTTATAATGGAT+AGG | - | chr5_4:647140-647159 | Msa0828300:intron | 40.0% |
| ! | TCATGGTAATGTGCTCATGA+AGG | - | chr5_4:647574-647593 | Msa0828300:CDS | 40.0% |
| TAATGTGCTCATGAAGGACT+AGG | - | chr5_4:647580-647599 | Msa0828300:CDS | 40.0% | |
| GTAGAGTCATTGAAACTCCA+AGG | - | chr5_4:647761-647780 | Msa0828300:intron | 40.0% | |
| TCATTGAAACTCCAAGGGAT+TGG | - | chr5_4:647767-647786 | Msa0828300:intron | 40.0% | |
| TGGTCTAGTGGTAAAAACAC+AGG | - | chr5_4:647787-647806 | Msa0828300:CDS | 40.0% | |
| AGTGGTAAAAACACAGGTGT+TGG | - | chr5_4:647793-647812 | Msa0828300:CDS | 40.0% | |
| !! | AAAAACACAGGTGTTGGATC+TGG | - | chr5_4:647799-647818 | Msa0828300:CDS | 40.0% |
| TTTATATTGACCTCCCTCCA+GGG | + | chr5_4:647853-647872 | None:intergenic | 40.0% | |
| ATTTATATTGACCTCCCTCC+AGG | + | chr5_4:647854-647873 | None:intergenic | 40.0% | |
| ! | CCAATAAAGTTTAGGGTGAG+GGG | + | chr5_4:647935-647954 | None:intergenic | 40.0% |
| ! | CCCAATAAAGTTTAGGGTGA+GGG | + | chr5_4:647936-647955 | None:intergenic | 40.0% |
| CCCTCACCCTAAACTTTATT+GGG | - | chr5_4:647933-647952 | Msa0828300:CDS | 40.0% | |
| ! | TCCCAATAAAGTTTAGGGTG+AGG | + | chr5_4:647937-647956 | None:intergenic | 40.0% |
| GGATGTATTGTATGCATTGG+GGG | - | chr5_4:648241-648260 | Msa0828300:intron | 40.0% | |
| ! | TGGTGGATATGAAGAGAAAC+CGG | - | chr5_4:648271-648290 | Msa0828300:intron | 40.0% |
| GCATGCAGACTAAGAAAGTA+TGG | + | chr5_4:648438-648457 | None:intergenic | 40.0% | |
| TAGAATCTTAGAAGCTAGGG+AGG | + | chr5_4:648502-648521 | None:intergenic | 40.0% | |
| GTTGCATTTAAGCACACTTG+AGG | - | chr5_4:648604-648623 | Msa0828300:intron | 40.0% | |
| ! | TTTAGCGTTAGAAAGTGTGC+AGG | + | chr5_4:648631-648650 | None:intergenic | 40.0% |
| ! | TAGTCTTGCAGCAGTTATAG+TGG | - | chr5_4:648748-648767 | Msa0828300:intron | 40.0% |
| AGTCTTGCAGCAGTTATAGT+GGG | - | chr5_4:648749-648768 | Msa0828300:intron | 40.0% | |
| !! | TCATGTTAACTTGTGCCCTA+AGG | - | chr5_4:648825-648844 | Msa0828300:intron | 40.0% |
| !! | CATGTTAACTTGTGCCCTAA+GGG | - | chr5_4:648826-648845 | Msa0828300:intron | 40.0% |
| TTCCTTAACTTATGCCCCAA+GGG | - | chr5_4:648966-648985 | Msa0828300:intron | 40.0% | |
| !! | AATGTTAACTTGTGCCCTTG+GGG | + | chr5_4:648983-649002 | None:intergenic | 40.0% |
| !! | GAAATGTTAACTTGTGCCCT+TGG | + | chr5_4:648985-649004 | None:intergenic | 40.0% |
| CTGGATTATGGAATTTCAGC+AGG | - | chr5_4:649111-649130 | Msa0828300:CDS | 40.0% | |
| GGATTATGGAATTTCAGCAG+GGG | - | chr5_4:649113-649132 | Msa0828300:CDS | 40.0% | |
| ATGCTCCTGGGCAAATAATT+TGG | - | chr5_4:649393-649412 | Msa0828300:intron | 40.0% | |
| ACAGACCAAATTATTTGCCC+AGG | + | chr5_4:649401-649420 | None:intergenic | 40.0% | |
| TGGGCAAATAATTTGGTCTG+TGG | - | chr5_4:649400-649419 | Msa0828300:intron | 40.0% | |
| ACAAATACCTCAACTAAGGC+AGG | + | chr5_4:649446-649465 | None:intergenic | 40.0% | |
| GGGAGGTTTCATTCTTGATA+TGG | - | chr5_4:650093-650112 | Msa0828300:intron | 40.0% | |
| TGCATTTCATTGCAGGGTTA+AGG | - | chr5_4:650119-650138 | Msa0828300:intron | 40.0% | |
| TTTCATTGCAGGGTTAAGGA+TGG | - | chr5_4:650123-650142 | Msa0828300:intron | 40.0% | |
| TCTAATCAACTGGGACTCTT+TGG | - | chr5_4:650259-650278 | Msa0828300:intron | 40.0% | |
| TTACAGATCGAGCCTCAAAT+TGG | + | chr5_4:650487-650506 | None:intergenic | 40.0% | |
| !!! | TTTTGACTTCCTAAGGAGAC+AGG | + | chr5_4:650543-650562 | None:intergenic | 40.0% |
| AACAAGCTGTCGAGAGTAAA+AGG | + | chr5_4:650673-650692 | None:intergenic | 40.0% | |
| ! | TTTTACTCTCGACAGCTTGT+TGG | - | chr5_4:650672-650691 | Msa0828300:intron | 40.0% |
| TTCAGCTATGACATCTCATG+TGG | - | chr5_4:650713-650732 | Msa0828300:intron | 40.0% | |
| TATATTATCTGGCGGTGGTA+AGG | + | chr5_4:650745-650764 | None:intergenic | 40.0% | |
| GATGATATATTATCTGGCGG+TGG | + | chr5_4:650750-650769 | None:intergenic | 40.0% | |
| ATCCTCAGTCATTTGGAGAA+TGG | - | chr5_4:650848-650867 | Msa0828300:intron | 40.0% | |
| ATCCATTCTCCAAATGACTG+AGG | + | chr5_4:650853-650872 | None:intergenic | 40.0% | |
| TCATTTGGAGAATGGATGCT+CGG | - | chr5_4:650856-650875 | Msa0828300:intron | 40.0% | |
| !! | ATGCTCGGGAGTATTTGTAA+TGG | - | chr5_4:650871-650890 | Msa0828300:intron | 40.0% |
| GATCATTTACCACATGCCTT+GGG | + | chr5_4:650914-650933 | None:intergenic | 40.0% | |
| TGATCATTTACCACATGCCT+TGG | + | chr5_4:650915-650934 | None:intergenic | 40.0% | |
| ! | AGTTCCTTTTTCCCTTTCAG+TGG | - | chr5_4:651303-651322 | Msa0828300:intron | 40.0% |
| TACTCCACTGAAAGGGAAAA+AGG | + | chr5_4:651310-651329 | None:intergenic | 40.0% | |
| CTTCAGTTACTCCACTGAAA+GGG | + | chr5_4:651317-651336 | None:intergenic | 40.0% | |
| TCTTCAGTTACTCCACTGAA+AGG | + | chr5_4:651318-651337 | None:intergenic | 40.0% | |
| ! | TGTTTCTGAAAACACCCTCA+AGG | - | chr5_4:651359-651378 | Msa0828300:intron | 40.0% |
| AAAAAACAGTTCATGCTGGG+AGG | - | chr5_4:651591-651610 | Msa0828300:intron | 40.0% | |
| ! | GAGAGATGTTGCTCTTTTAG+AGG | - | chr5_4:651691-651710 | Msa0828300:intron | 40.0% |
| CCTAGAATCGCGATCTGTAT+TGG | + | chr5_4:646561-646580 | None:intergenic | 45.0% | |
| CCAATACAGATCGCGATTCT+AGG | - | chr5_4:646558-646577 | Msa0828300:three_prime_UTR | 45.0% | |
| !!! | CGTTTTGGCTGGACAATATC+AGG | - | chr5_4:646794-646813 | Msa0828300:three_prime_UTR | 45.0% |
| TTACCACTAGACCAATCCCT+TGG | + | chr5_4:647781-647800 | None:intergenic | 45.0% | |
| TTATATTGACCTCCCTCCAG+GGG | + | chr5_4:647852-647871 | None:intergenic | 45.0% | |
| CCCCTCACCCTAAACTTTAT+TGG | - | chr5_4:647932-647951 | Msa0828300:CDS | 45.0% | |
| GCTGGTAAACATGTCCTTCA+AGG | - | chr5_4:648064-648083 | Msa0828300:intron | 45.0% | |
| TATGCATTGGGGGACTGATT+TGG | - | chr5_4:648251-648270 | Msa0828300:intron | 45.0% | |
| GTCTTGCAGCAGTTATAGTG+GGG | - | chr5_4:648750-648769 | Msa0828300:intron | 45.0% | |
| !! | CTCCTTAACTTGTGCCCTTA+GGG | + | chr5_4:648843-648862 | None:intergenic | 45.0% |
| !! | TCTCCTTAACTTGTGCCCTT+AGG | + | chr5_4:648844-648863 | None:intergenic | 45.0% |
| GTTCCTTAACTTATGCCCCA+AGG | - | chr5_4:648965-648984 | Msa0828300:intron | 45.0% | |
| TGCTACAAATAGGCTTGGCT+TGG | + | chr5_4:649060-649079 | None:intergenic | 45.0% | |
| TACTGCAGGTATAACTGAGC+TGG | - | chr5_4:649334-649353 | Msa0828300:intron | 45.0% | |
| ! | TTTTGAGCCTGCCTTAGTTG+AGG | - | chr5_4:649436-649455 | Msa0828300:intron | 45.0% |
| GAATGGACAGCCAGATTCAT+AGG | + | chr5_4:649487-649506 | None:intergenic | 45.0% | |
| ! | GCACACTCATCATTTTCCCA+AGG | + | chr5_4:649549-649568 | None:intergenic | 45.0% |
| TAGTTTAGATGACATGGCCG+CGG | - | chr5_4:649864-649883 | Msa0828300:intron | 45.0% | |
| TTGACTTTCTCAGTACTCCG+CGG | + | chr5_4:649884-649903 | None:intergenic | 45.0% | |
| !! | ATTTTTCCTTTCTGGCAGGG+AGG | - | chr5_4:650076-650095 | Msa0828300:intron | 45.0% |
| ATGGGTGTGCATTTCATTGC+AGG | - | chr5_4:650112-650131 | Msa0828300:intron | 45.0% | |
| TGGGTGTGCATTTCATTGCA+GGG | - | chr5_4:650113-650132 | Msa0828300:intron | 45.0% | |
| CATTTGGAGAATGGATGCTC+GGG | - | chr5_4:650857-650876 | Msa0828300:intron | 45.0% | |
| GAATCCACGCTCAATCTGAA+GGG | + | chr5_4:651078-651097 | None:intergenic | 45.0% | |
| ! | ACTTCCATTTTGCAGAAGGG+CGG | - | chr5_4:651632-651651 | Msa0828300:intron | 45.0% |
| TTAGAGGCAATGCTTGAGTC+TGG | - | chr5_4:651707-651726 | Msa0828300:intron | 45.0% | |
| CTTGAGTCTGGATCAAAGCA+GGG | - | chr5_4:651719-651738 | Msa0828300:intron | 45.0% | |
| ! | CGGACTTGTTCATCTTCACT+TGG | + | chr5_4:651868-651887 | None:intergenic | 45.0% |
| AGTGAAGATGAACAAGTCCG+TGG | - | chr5_4:651868-651887 | Msa0828300:intron | 45.0% | |
| AGCAGGGAGATCAATGTGAT+TGG | - | chr5_4:651895-651914 | Msa0828300:CDS | 45.0% | |
| TCCCATGCATCTGTTGATAC+AGG | - | chr5_4:652049-652068 | Msa0828300:CDS | 45.0% | |
| CCCTGTATCAACAGATGCAT+GGG | + | chr5_4:652053-652072 | None:intergenic | 45.0% | |
| CCCATGCATCTGTTGATACA+GGG | - | chr5_4:652050-652069 | Msa0828300:CDS | 45.0% | |
| TCCCTGTATCAACAGATGCA+TGG | + | chr5_4:652054-652073 | None:intergenic | 45.0% | |
| TCAAGTACTCAAAGCGTGTC+AGG | + | chr5_4:652215-652234 | None:intergenic | 45.0% | |
| AGATCTCCGAGAGTCTTGGA+AGG | + | chr5_4:646611-646630 | None:intergenic | 50.0% | |
| TGTGAGATCTCCGAGAGTCT+TGG | + | chr5_4:646615-646634 | None:intergenic | 50.0% | |
| !!! | GCTGTTCTTGTCGTTTTGGC+TGG | - | chr5_4:646783-646802 | Msa0828300:three_prime_UTR | 50.0% |
| !! | ACTCCAAGGGATTGGTCTAG+TGG | - | chr5_4:647775-647794 | Msa0828300:CDS | 50.0% |
| !! | AACACAGGTGTTGGATCTGG+AGG | - | chr5_4:647802-647821 | Msa0828300:CDS | 50.0% |
| ! | GGTGTTGGATCTGGAGGTTT+CGG | - | chr5_4:647808-647827 | Msa0828300:CDS | 50.0% |
| GTGTTGGATCTGGAGGTTTC+GGG | - | chr5_4:647809-647828 | Msa0828300:CDS | 50.0% | |
| !! | GGCTCCAAGAGCACTTAGAT+AGG | + | chr5_4:647878-647897 | None:intergenic | 50.0% |
| TAAGTGCTCTTGGAGCCCTA+AGG | - | chr5_4:647881-647900 | Msa0828300:intron | 50.0% | |
| CCAAGGCAGAGAAGACCTTA+GGG | + | chr5_4:647899-647918 | None:intergenic | 50.0% | |
| TCCAAGGCAGAGAAGACCTT+AGG | + | chr5_4:647900-647919 | None:intergenic | 50.0% | |
| ! | TGCTACTTACCAGATGCTGC+CGG | + | chr5_4:648293-648312 | None:intergenic | 50.0% |
| ! | TGCCCTAAGGGCACAAGTTA+AGG | - | chr5_4:648838-648857 | Msa0828300:intron | 50.0% |
| TGCCCTTGGGGCATAAGTTA+AGG | + | chr5_4:648971-648990 | None:intergenic | 50.0% | |
| GTATTAAGCTGCACGCTAGC+TGG | - | chr5_4:649092-649111 | Msa0828300:CDS | 50.0% | |
| TCGATTTCTGCTGATGCTCC+TGG | - | chr5_4:649380-649399 | Msa0828300:intron | 50.0% | |
| CGATTTCTGCTGATGCTCCT+GGG | - | chr5_4:649381-649400 | Msa0828300:intron | 50.0% | |
| ATGAAACCTCCCTGCCAGAA+AGG | + | chr5_4:650085-650104 | None:intergenic | 50.0% | |
| !! | TCGACAGCTTGTTGGATGTG+AGG | - | chr5_4:650680-650699 | Msa0828300:intron | 50.0% |
| !! | ACAGCTTGTTGGATGTGAGG+TGG | - | chr5_4:650683-650702 | Msa0828300:intron | 50.0% |
| TAGATCTTGTGGCGAGTCGT+TGG | - | chr5_4:651041-651060 | Msa0828300:intron | 50.0% | |
| GGAATCCACGCTCAATCTGA+AGG | + | chr5_4:651079-651098 | None:intergenic | 50.0% | |
| CAGATTGAGCGTGGATTCCA+AGG | - | chr5_4:651080-651099 | Msa0828300:intron | 50.0% | |
| CGTGGATTCCAAGGACAACA+TGG | - | chr5_4:651089-651108 | Msa0828300:intron | 50.0% | |
| CCAGGTAACCATGTTGTCCT+TGG | + | chr5_4:651100-651119 | None:intergenic | 50.0% | |
| CCAAGGACAACATGGTTACC+TGG | - | chr5_4:651097-651116 | Msa0828300:intron | 50.0% | |
| ACAAAAGAGAGGCGATGCTC+AGG | + | chr5_4:651662-651681 | None:intergenic | 50.0% | |
| ! | CATCGCCTCTCTTTTGTCGA+GGG | - | chr5_4:651665-651684 | Msa0828300:intron | 50.0% |
| GCTTGAGTCTGGATCAAAGC+AGG | - | chr5_4:651718-651737 | Msa0828300:intron | 50.0% | |
| AACAAGTCCGTGGATCAAGC+AGG | - | chr5_4:651878-651897 | Msa0828300:CDS | 50.0% | |
| ACAAGTCCGTGGATCAAGCA+GGG | - | chr5_4:651879-651898 | Msa0828300:CDS | 50.0% | |
| TGATCTCCCTGCTTGATCCA+CGG | + | chr5_4:651888-651907 | None:intergenic | 50.0% | |
| ! | CAGATCGCGATTCTAGGAGC+AGG | - | chr5_4:646564-646583 | Msa0828300:three_prime_UTR | 55.0% |
| CCCTAAGGTCTTCTCTGCCT+TGG | - | chr5_4:647896-647915 | Msa0828300:intron | 55.0% | |
| AGGTCTTCTCTGCCTTGGAC+TGG | - | chr5_4:647901-647920 | Msa0828300:intron | 55.0% | |
| GGTCTTCTCTGCCTTGGACT+GGG | - | chr5_4:647902-647921 | Msa0828300:intron | 55.0% | |
| !! | GCATTGGGGGACTGATTTGG+TGG | - | chr5_4:648254-648273 | Msa0828300:intron | 55.0% |
| GAAGAGAAACCGGCAGCATC+TGG | - | chr5_4:648281-648300 | Msa0828300:intron | 55.0% | |
| GCTGCACGCTAGCTGGATTA+TGG | - | chr5_4:649099-649118 | Msa0828300:CDS | 55.0% | |
| TGTCTCCTCCAGATCACCCA+AGG | - | chr5_4:650895-650914 | Msa0828300:intron | 55.0% | |
| ACATGCCTTGGGTGATCTGG+AGG | + | chr5_4:650903-650922 | None:intergenic | 55.0% | |
| TCCAGATCACCCAAGGCATG+TGG | - | chr5_4:650902-650921 | Msa0828300:intron | 55.0% | |
| ACCACATGCCTTGGGTGATC+TGG | + | chr5_4:650906-650925 | None:intergenic | 55.0% | |
| TGGCGAGTCGTTGGCATGAA+TGG | - | chr5_4:651050-651069 | Msa0828300:intron | 55.0% | |
| GGAACCCTTCAGATTGAGCG+TGG | - | chr5_4:651071-651090 | Msa0828300:intron | 55.0% | |
| CTGACCGCCCTTCTGCAAAA+TGG | + | chr5_4:651639-651658 | None:intergenic | 55.0% | |
| ! | GCATCGCCTCTCTTTTGTCG+AGG | - | chr5_4:651664-651683 | Msa0828300:intron | 55.0% |
| TCGCACCCTCGACAAAAGAG+AGG | + | chr5_4:651673-651692 | None:intergenic | 55.0% | |
| TGTGCACGCGCGCAATTGTC+TGG | - | chr5_4:648127-648146 | Msa0828300:intron | 60.0% | |
| CTGAGCTCTGCTAGTGCCCC+TGG | - | chr5_4:647833-647852 | Msa0828300:intron | 65.0% | |
| AGCTCTGCTAGTGCCCCTGG+AGG | - | chr5_4:647836-647855 | Msa0828300:intron | 65.0% | |
| GCTCTGCTAGTGCCCCTGGA+GGG | - | chr5_4:647837-647856 | Msa0828300:intron | 65.0% | |
| GGGGACAGTGACCCAGTCCA+AGG | + | chr5_4:647916-647935 | None:intergenic | 65.0% | |
| CTGCTAGTGCCCCTGGAGGG+AGG | - | chr5_4:647840-647859 | Msa0828300:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 646419 | 652268 | 646419 | ID=Msa0828300;Name=Msa0828300 |
| chr5_4 | mRNA | 646419 | 652268 | 646419 | ID=Msa0828300-mRNA-1;Parent=Msa0828300;Name=Msa0828300-mRNA-1;_AED=0.14;_eAED=0.14;_QI=133|0.9|1|1|0.9|0.81|11|421|350 |
| chr5_4 | exon | 646419 | 646838 | 646419 | ID=Msa0828300-mRNA-1:exon:157;Parent=Msa0828300-mRNA-1 |
| chr5_4 | exon | 646917 | 647040 | 646917 | ID=Msa0828300-mRNA-1:exon:156;Parent=Msa0828300-mRNA-1 |
| chr5_4 | exon | 647307 | 647417 | 647307 | ID=Msa0828300-mRNA-1:exon:155;Parent=Msa0828300-mRNA-1 |
| chr5_4 | exon | 647569 | 647643 | 647569 | ID=Msa0828300-mRNA-1:exon:154;Parent=Msa0828300-mRNA-1 |
| chr5_4 | exon | 647771 | 647831 | 647771 | ID=Msa0828300-mRNA-1:exon:153;Parent=Msa0828300-mRNA-1 |
| chr5_4 | exon | 647912 | 648000 | 647912 | ID=Msa0828300-mRNA-1:exon:152;Parent=Msa0828300-mRNA-1 |
| chr5_4 | exon | 648543 | 648593 | 648543 | ID=Msa0828300-mRNA-1:exon:151;Parent=Msa0828300-mRNA-1 |
| chr5_4 | exon | 649048 | 649161 | 649048 | ID=Msa0828300-mRNA-1:exon:150;Parent=Msa0828300-mRNA-1 |
| chr5_4 | exon | 649230 | 649345 | 649230 | ID=Msa0828300-mRNA-1:exon:149;Parent=Msa0828300-mRNA-1 |
| chr5_4 | exon | 650602 | 650650 | 650602 | ID=Msa0828300-mRNA-1:exon:148;Parent=Msa0828300-mRNA-1 |
| chr5_4 | exon | 651872 | 652268 | 651872 | ID=Msa0828300-mRNA-1:exon:147;Parent=Msa0828300-mRNA-1 |
| chr5_4 | five_prime_UTR | 652136 | 652268 | 652136 | ID=Msa0828300-mRNA-1:five_prime_utr;Parent=Msa0828300-mRNA-1 |
| chr5_4 | CDS | 651872 | 652135 | 651872 | ID=Msa0828300-mRNA-1:cds;Parent=Msa0828300-mRNA-1 |
| chr5_4 | CDS | 650602 | 650650 | 650602 | ID=Msa0828300-mRNA-1:cds;Parent=Msa0828300-mRNA-1 |
| chr5_4 | CDS | 649230 | 649345 | 649230 | ID=Msa0828300-mRNA-1:cds;Parent=Msa0828300-mRNA-1 |
| chr5_4 | CDS | 649048 | 649161 | 649048 | ID=Msa0828300-mRNA-1:cds;Parent=Msa0828300-mRNA-1 |
| chr5_4 | CDS | 648543 | 648593 | 648543 | ID=Msa0828300-mRNA-1:cds;Parent=Msa0828300-mRNA-1 |
| chr5_4 | CDS | 647912 | 648000 | 647912 | ID=Msa0828300-mRNA-1:cds;Parent=Msa0828300-mRNA-1 |
| chr5_4 | CDS | 647771 | 647831 | 647771 | ID=Msa0828300-mRNA-1:cds;Parent=Msa0828300-mRNA-1 |
| chr5_4 | CDS | 647569 | 647643 | 647569 | ID=Msa0828300-mRNA-1:cds;Parent=Msa0828300-mRNA-1 |
| chr5_4 | CDS | 647307 | 647417 | 647307 | ID=Msa0828300-mRNA-1:cds;Parent=Msa0828300-mRNA-1 |
| chr5_4 | CDS | 646918 | 647040 | 646918 | ID=Msa0828300-mRNA-1:cds;Parent=Msa0828300-mRNA-1 |
| chr5_4 | three_prime_UTR | 646917 | 646917 | 646917 | ID=Msa0828300-mRNA-1:three_prime_utr;Parent=Msa0828300-mRNA-1 |
| chr5_4 | three_prime_UTR | 646419 | 646838 | 646419 | ID=Msa0828300-mRNA-1:three_prime_utr;Parent=Msa0828300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
