AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0620990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0620990 MtrunA17_Chr1g0193411 94.885 391 3 2 1 381 1 384 0.0 750
Msa0620990 MtrunA17_Chr7g0246801 31.183 279 162 14 1 271 1 257 3.33e-17 83.2
Msa0620990 MtrunA17_Chr8g0380081 25.952 289 187 7 1 279 1 272 1.69e-16 79.7
Msa0620990 MtrunA17_Chr6g0482931 25.641 351 229 11 1 332 1 338 1.62e-14 75.1
Msa0620990 MtrunA17_Chr7g0228021 30.508 118 72 2 131 248 1031 1138 8.65e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0620990 AT5G26680.2 80.307 391 59 3 1 381 1 383 0.0 642
Msa0620990 AT5G26680.5 82.065 368 49 2 1 358 1 361 0.0 622
Msa0620990 AT5G26680.4 82.065 368 49 2 1 358 1 361 0.0 622
Msa0620990 AT5G26680.3 82.065 368 49 2 1 358 1 361 0.0 622
Msa0620990 AT5G26680.1 82.240 366 48 2 1 356 1 359 0.0 618
Msa0620990 AT1G29630.2 28.929 280 172 7 1 269 1 264 1.18e-19 91.3
Msa0620990 AT1G01880.3 29.268 246 153 8 19 261 16 243 5.24e-16 80.1
Msa0620990 AT1G01880.1 29.268 246 153 8 19 261 16 243 5.24e-16 80.1
Msa0620990 AT1G01880.2 29.268 246 152 9 19 261 16 242 6.53e-15 76.6
Msa0620990 AT3G28030.4 31.579 133 81 3 116 248 721 843 2.53e-13 72.0
Msa0620990 AT3G28030.2 31.579 133 81 3 116 248 913 1035 3.32e-13 72.0
Msa0620990 AT3G28030.3 31.579 133 81 3 116 248 939 1061 3.50e-13 72.0
Msa0620990 AT3G28030.1 31.579 133 81 3 116 248 913 1035 3.62e-13 71.6
Msa0620990 AT1G29630.1 28.163 245 153 6 1 236 1 231 1.50e-11 66.2

Find 100 sgRNAs with CRISPR-Local

Find 410 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGACTTATGTATACTTTC+TGG 0.201124 4_2:-72795450 Msa0620990:CDS
TTTGTTCTCCTTCATTGATT+TGG 0.219066 4_2:+72798268 None:intergenic
ATTAGATGGCGAAGAAATTT+AGG 0.232530 4_2:+72795639 None:intergenic
TTGTTCTCCTTCATTGATTT+GGG 0.261805 4_2:+72798269 None:intergenic
GCAACGTCAAATTCCATTAC+TGG 0.277285 4_2:+72795594 None:intergenic
TAATTTAAGTTAGATAATTC+TGG 0.292059 4_2:-72792315 Msa0620990:three_prime_UTR
CAATGTGTGCCACAGGTATT+GGG 0.301115 4_2:-72795298 Msa0620990:intron
ACCAGATGATTGGCCGTATC+AGG 0.302586 4_2:-72794944 Msa0620990:CDS
TAAATTTCTTCGCCATCTAA+TGG 0.313159 4_2:-72795637 Msa0620990:CDS
AGTTGGATTTGTATCTTAGA+TGG 0.321968 4_2:-72792548 Msa0620990:three_prime_UTR
ATAGTTATTACTTCTTCATC+TGG 0.327089 4_2:+72794850 None:intergenic
TCAAACAACGATGGGTATTA+AGG 0.329268 4_2:-72798437 Msa0620990:intron
CCGTACGAAAACACCTTTAC+AGG 0.342794 4_2:-72798550 None:intergenic
TTGAACTAGGATCCATTAGA+TGG 0.369663 4_2:+72795625 None:intergenic
GTACATACCTTCCGTTTGAT+AGG 0.370776 4_2:+72794379 None:intergenic
AGAATGGGTTCAACAGTGAT+AGG 0.372124 4_2:-72794675 Msa0620990:CDS
TGTGCTGCACTTTGCAAAGC+TGG 0.379737 4_2:-72796834 Msa0620990:CDS
GACATGGATTCCTTAACGTT+TGG 0.380008 4_2:-72795666 Msa0620990:CDS
CAAGTTAAATTAACTCGAAA+AGG 0.387802 4_2:+72792240 None:intergenic
TGAAACCACTTACAAGAAAC+TGG 0.396979 4_2:+72798192 None:intergenic
AGCTCTTGATTCTTCATCTC+CGG 0.402266 4_2:+72797452 None:intergenic
TCCTGATACGGCCAATCATC+TGG 0.411236 4_2:+72794943 None:intergenic
AACAAATTCGAATCTTACTT+TGG 0.413135 4_2:-72798251 Msa0620990:CDS
TGACGGCAGAAAGATGAATA+AGG 0.423648 4_2:+72798495 None:intergenic
TTTAGGAGCTCCAAACGTTA+AGG 0.426815 4_2:+72795656 None:intergenic
GTATACATAAGTCAATAAAT+TGG 0.431271 4_2:+72795457 None:intergenic
ACATTTCTAGTAAATGAGAA+TGG 0.445257 4_2:-72794691 Msa0620990:CDS
GTGAATGATGCTAAAGCTAA+AGG 0.452022 4_2:-72792615 Msa0620990:CDS
TGCAACGTCACCTCAACAAC+AGG 0.456473 4_2:+72796947 None:intergenic
ATGAAGTACTTAATCTTAAG+TGG 0.475016 4_2:-72794879 Msa0620990:CDS
CGAGGCTACCGCGGGTTTGA+CGG 0.478333 4_2:-72797306 Msa0620990:CDS
TTCAAAGAAGATTCCAGTAA+TGG 0.481227 4_2:-72795607 Msa0620990:CDS
TTGCAGAGGATAATGTGAAC+TGG 0.481897 4_2:+72798468 None:intergenic
ACATTGAGCCTCTGCTTCTG+AGG 0.483766 4_2:+72796854 None:intergenic
TCATCATCAGTTATGACCTC+TGG 0.494511 4_2:+72794898 None:intergenic
TTAGCTTTAGCATCATTCAC+TGG 0.498319 4_2:+72792618 None:intergenic
ACTGGAATCTTCTTTGAACT+AGG 0.498453 4_2:+72795612 None:intergenic
ATCCATCAGTACCTATCAAA+CGG 0.498859 4_2:-72794390 Msa0620990:CDS
TGAATGATGCTAAAGCTAAA+GGG 0.506104 4_2:-72792614 Msa0620990:CDS
GTTGGATTTGTATCTTAGAT+GGG 0.507708 4_2:-72792547 Msa0620990:three_prime_UTR
TGCACTTTGCAAAGCTGGAA+AGG 0.511154 4_2:-72796829 Msa0620990:CDS
TAGATTGTTGTGGGAAGAAG+TGG 0.512021 4_2:-72798097 Msa0620990:CDS
GGTACTGATGGATTTGCAGT+TGG 0.513657 4_2:+72794400 None:intergenic
TTCCGTTTGATAGGTACTGA+TGG 0.513936 4_2:+72794388 None:intergenic
CATTTCTAGTAAATGAGAAT+GGG 0.515548 4_2:-72794690 Msa0620990:CDS
GGTACCAGGTACCAGATGAT+TGG 0.518316 4_2:-72794954 Msa0620990:CDS
CAATCAGACTTCTAGAAGCC+GGG 0.522415 4_2:-72797616 Msa0620990:CDS
TAGCATCAACAGCAATCTTA+CGG 0.527772 4_2:+72798228 None:intergenic
ACAATCAGACTTCTAGAAGC+CGG 0.528458 4_2:-72797617 Msa0620990:CDS
CATGGGAGTGCCTGTTGTTG+AGG 0.530578 4_2:-72796957 Msa0620990:intron
AGTCGTCGAGCCTCCTGATA+CGG 0.531492 4_2:+72794931 None:intergenic
CATTGAGCCTCTGCTTCTGA+GGG 0.532841 4_2:+72796855 None:intergenic
AAGTTAAATTAACTCGAAAA+GGG 0.536894 4_2:+72792241 None:intergenic
CGTCAAACCCGCGGTAGCCT+CGG 0.539383 4_2:+72797307 None:intergenic
AGGGAGTAACAAGAAAACTA+AGG 0.546996 4_2:-72792595 Msa0620990:CDS
TCCCGCGCACTCTCCTGTAA+AGG 0.554282 4_2:+72798537 None:intergenic
GAATTACACTGGCTTCATCC+CGG 0.555023 4_2:+72797598 None:intergenic
GTCATTTCAGGCTGACAACA+AGG 0.555566 4_2:-72797177 Msa0620990:intron
GTTATTACTTCTTCATCTGG+AGG 0.556809 4_2:+72794853 None:intergenic
TGCTGTGGCTTCTGAAGACA+TGG 0.557625 4_2:-72795682 Msa0620990:CDS
ATTCTCATTCAAACAACGAT+GGG 0.565501 4_2:-72798445 Msa0620990:exon
TAATGCTCCCAAATCAATGA+AGG 0.565914 4_2:-72798276 Msa0620990:CDS
GAGTCATTTACATGTTGACC+AGG 0.570576 4_2:-72792522 Msa0620990:intron
CACCTTTACAGGAGAGTGCG+CGG 0.572258 4_2:-72798539 Msa0620990:five_prime_UTR
AAAGAGAGCCGAGGCTACCG+CGG 0.575078 4_2:-72797315 Msa0620990:CDS
TAAGTCAATAAATTGGTCCA+TGG 0.575375 4_2:+72795464 None:intergenic
GATTACTGTGACAACATTCG+AGG 0.577617 4_2:-72795423 Msa0620990:intron
AATGGAATTTGACGTTGCAA+AGG 0.585097 4_2:-72795589 Msa0620990:intron
AAGAGAGCCGAGGCTACCGC+GGG 0.585100 4_2:-72797314 Msa0620990:CDS
TTTGCAGTTGGCATGAAGGA+GGG 0.585902 4_2:-72792400 Msa0620990:intron
AATTCTCATTCAAACAACGA+TGG 0.591195 4_2:-72798446 Msa0620990:exon
ACGGCCAATCATCTGGTACC+TGG 0.591435 4_2:+72794950 None:intergenic
AAGAAAACTAAGGCCGGTGG+CGG 0.593257 4_2:-72792585 Msa0620990:CDS
AGAACAAGTCATCACAAGGC+CGG 0.593889 4_2:-72794525 Msa0620990:intron
TCTTGATTCTTCATCTCCGG+TGG 0.593963 4_2:+72797455 None:intergenic
GGGTTTGACGGAAGCTCTAG+AGG 0.596065 4_2:-72797294 Msa0620990:intron
GAATGGGTTCAACAGTGATA+GGG 0.599805 4_2:-72794674 Msa0620990:CDS
AATGTGTGCCACAGGTATTG+GGG 0.602638 4_2:-72795297 Msa0620990:intron
ATCAGTACCTATCAAACGGA+AGG 0.602952 4_2:-72794386 Msa0620990:intron
CAACAGTGATAGGGTGACAA+AGG 0.605881 4_2:-72794665 Msa0620990:intron
GCAGGCACCCTCAGAAGCAG+AGG 0.611684 4_2:-72796862 Msa0620990:intron
AGTAACAAGAAAACTAAGGC+CGG 0.615091 4_2:-72792591 Msa0620990:CDS
ATGTGTGCCACAGGTATTGG+GGG 0.618919 4_2:-72795296 Msa0620990:intron
TTACCACCGATTCAGGTACC+AGG 0.619372 4_2:-72794968 Msa0620990:intron
ACCTTTACAGGAGAGTGCGC+GGG 0.621575 4_2:-72798538 Msa0620990:five_prime_UTR
TATTATACAGGTGTATGCTG+TGG 0.633214 4_2:-72795697 Msa0620990:intron
ATTCAGTAAACGGACAGTGA+AGG 0.645257 4_2:-72797141 Msa0620990:intron
GGAGGAGCTAGATTTGACCA+TGG 0.645396 4_2:-72795481 Msa0620990:CDS
AGATGATTGGCCGTATCAGG+AGG 0.645693 4_2:-72794941 Msa0620990:CDS
GCAAAGAACAAGTCATCACA+AGG 0.651244 4_2:-72794529 Msa0620990:CDS
TGGAAAACATAAGCAAAGAG+AGG 0.655385 4_2:-72795223 Msa0620990:intron
TAGAGCTTCCGTCAAACCCG+CGG 0.656861 4_2:+72797298 None:intergenic
CAGTCTCTCAAAGAGAGCCG+AGG 0.661691 4_2:-72797324 Msa0620990:CDS
CTGAAGCTCATACGCCAACA+CGG 0.665576 4_2:-72795263 Msa0620990:CDS
ATTTGCAAGGAATGTTTGCG+CGG 0.671541 4_2:-72797640 Msa0620990:CDS
TTGTGATACAATGCTTCATG+TGG 0.680961 4_2:-72792282 Msa0620990:three_prime_UTR
AACAAGAAAACTAAGGCCGG+TGG 0.687823 4_2:-72792588 Msa0620990:CDS
GTTTGAATGAGAATTTGCAG+AGG 0.689167 4_2:+72798454 None:intergenic
TAATGTGAACTGGAGTGTGA+CGG 0.699602 4_2:+72798478 None:intergenic
TGTGTGCCACAGGTATTGGG+GGG 0.726679 4_2:-72795295 Msa0620990:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATATTTAATAAAATAA+AGG + chr4_2:72796952-72796971 None:intergenic 0.0%
!!! TTTTATTAAATATTAATAAT+AGG - chr4_2:72796955-72796974 Msa0620990:intron 0.0%
!! TTTATTAAATATTAATAATA+GGG - chr4_2:72796956-72796975 Msa0620990:intron 0.0%
!!! TTTAATGTTGATTAATTTTT+AGG - chr4_2:72792451-72792470 Msa0620990:intron 10.0%
!!! TTAATGTTGATTAATTTTTA+GGG - chr4_2:72792452-72792471 Msa0620990:intron 10.0%
!!! AAACATTTTATATATTATAC+AGG - chr4_2:72795063-72795082 Msa0620990:intron 10.0%
!!! TTTTGTTTAATTTTTCTGTA+AGG - chr4_2:72793059-72793078 Msa0620990:intron 15.0%
!!! TTTGTTTAATTTTTCTGTAA+GGG - chr4_2:72793060-72793079 Msa0620990:intron 15.0%
!! ATATTGAAAAATTCAGTAAA+CGG - chr4_2:72793621-72793640 Msa0620990:intron 15.0%
!!! TTATTTATTTTTCATTTCCA+TGG + chr4_2:72794049-72794068 None:intergenic 15.0%
!!! TATTAATTTTAGTTAACATG+TGG - chr4_2:72794446-72794465 Msa0620990:intron 15.0%
!!! ATTAATTTTAGTTAACATGT+GGG - chr4_2:72794447-72794466 Msa0620990:intron 15.0%
!! TCACTTTGAATAAAAATTAT+AGG - chr4_2:72794800-72794819 Msa0620990:intron 15.0%
!!! GTAATGTAACATTTAATTTT+GGG + chr4_2:72794903-72794922 None:intergenic 15.0%
!! TTAAATAGTTTCATAAATAG+TGG + chr4_2:72794925-72794944 None:intergenic 15.0%
!! TCAAATGCAAAAAATATTAA+AGG + chr4_2:72794965-72794984 None:intergenic 15.0%
!! AAAACAAAGAATTTCAAAAT+GGG + chr4_2:72795588-72795607 None:intergenic 15.0%
!! AAATTAATAAAATTTGACTG+TGG + chr4_2:72795760-72795779 None:intergenic 15.0%
!!! ATATCTATGTATCAATTTTT+TGG - chr4_2:72796014-72796033 Msa0620990:intron 15.0%
!!! TATGATTTTTTTTCAATGTT+AGG - chr4_2:72796200-72796219 Msa0620990:intron 15.0%
!! AATAAATTATAATCACTTAC+CGG + chr4_2:72796269-72796288 None:intergenic 15.0%
!!! CTTAATTTTTTTGGTAAATT+TGG + chr4_2:72797039-72797058 None:intergenic 15.0%
!!! AAATATCAGCTTAATTTTTT+TGG + chr4_2:72797048-72797067 None:intergenic 15.0%
!! TTAATAAAGTAGAAATGAAA+AGG + chr4_2:72797693-72797712 None:intergenic 15.0%
!!! ATTACAGAAAATTGTTATTA+TGG - chr4_2:72797750-72797769 Msa0620990:intron 15.0%
!!! TTATTATCAATTTGTTTTCA+TGG + chr4_2:72797860-72797879 None:intergenic 15.0%
!!! TTTTCAATTATCTTTAACAT+TGG + chr4_2:72798049-72798068 None:intergenic 15.0%
!!! TAATTTAAGTTAGATAATTC+TGG - chr4_2:72798457-72798476 Msa0620990:five_prime_UTR 15.0%
!! TTTCAATTTCAACCTAAAAT+GGG - chr4_2:72792598-72792617 Msa0620990:CDS 20.0%
!! AAAAAAAAGAAGAATTACAC+TGG + chr4_2:72793188-72793207 None:intergenic 20.0%
!! TAGAAGAAAATGCATTAATT+AGG + chr4_2:72793418-72793437 None:intergenic 20.0%
!!! TATTATAATGGATTGAAACA+AGG - chr4_2:72793706-72793725 Msa0620990:intron 20.0%
!! AGTATAGAATATATTCTCAA+CGG + chr4_2:72793744-72793763 None:intergenic 20.0%
!! AATATATTCTATACTCTTGT+AGG - chr4_2:72793749-72793768 Msa0620990:intron 20.0%
!!! TATCATTTTAGTTTTCAAGA+AGG + chr4_2:72793993-72794012 None:intergenic 20.0%
!!! TATCATTTTAGTTTTCAAGA+AGG + chr4_2:72793993-72794012 None:intergenic 20.0%
!! GTGTTTAATTAAAAACTAGA+GGG + chr4_2:72794279-72794298 None:intergenic 20.0%
!! AGTGTTTAATTAAAAACTAG+AGG + chr4_2:72794280-72794299 None:intergenic 20.0%
!!! TCGCTTTGAATAAAAATTAA+GGG + chr4_2:72794308-72794327 None:intergenic 20.0%
!!! GGTAATGTAACATTTAATTT+TGG + chr4_2:72794904-72794923 None:intergenic 20.0%
!!! CTTGTATTAATTTGATATGA+AGG + chr4_2:72795008-72795027 None:intergenic 20.0%
!! GTATACATAAGTCAATAAAT+TGG + chr4_2:72795318-72795337 None:intergenic 20.0%
!! GAAAACAAAGAATTTCAAAA+TGG + chr4_2:72795589-72795608 None:intergenic 20.0%
!! AACTTTAAGTATTCTTTCAA+AGG - chr4_2:72795955-72795974 Msa0620990:intron 20.0%
!! ACTTTAAGTATTCTTTCAAA+GGG - chr4_2:72795956-72795975 Msa0620990:intron 20.0%
!! TACATAGATATAACAAACAT+AGG + chr4_2:72796005-72796024 None:intergenic 20.0%
!!! TTTAGTTTTTCTTCTTCTTT+TGG - chr4_2:72796531-72796550 Msa0620990:intron 20.0%
!!! TTAGTTTTTCTTCTTCTTTT+GGG - chr4_2:72796532-72796551 Msa0620990:intron 20.0%
!! AATAATGTATATCCATATCT+CGG + chr4_2:72796739-72796758 None:intergenic 20.0%
!! ATTATTCATGCATTTGATAT+GGG - chr4_2:72796753-72796772 Msa0620990:intron 20.0%
!!! ATATGGGGTATTTTTTTTAT+TGG - chr4_2:72796769-72796788 Msa0620990:intron 20.0%
!! ATAAAATAAAGGAACACAAA+GGG + chr4_2:72796941-72796960 None:intergenic 20.0%
!! AATAAAATAAAGGAACACAA+AGG + chr4_2:72796942-72796961 None:intergenic 20.0%
!!! ATGTAGTTTTAAAATTTCTC+AGG + chr4_2:72797367-72797386 None:intergenic 20.0%
!!! AGAAATTTTAAAACTACATC+AGG - chr4_2:72797368-72797387 Msa0620990:intron 20.0%
!!! AGAAAATTGTTATTATGGTT+TGG - chr4_2:72797755-72797774 Msa0620990:intron 20.0%
!!! CACACAAATATTTTACAATT+TGG + chr4_2:72798426-72798445 None:intergenic 20.0%
!! AAGTTAAATTAACTCGAAAA+GGG + chr4_2:72798534-72798553 None:intergenic 20.0%
! GAAATTGAGAGAAAAATAGA+GGG + chr4_2:72792375-72792394 None:intergenic 25.0%
! AGAAATTGAGAGAAAAATAG+AGG + chr4_2:72792376-72792395 None:intergenic 25.0%
! AACAAATTCGAATCTTACTT+TGG - chr4_2:72792521-72792540 Msa0620990:intron 25.0%
! GTTTCAATTTCAACCTAAAA+TGG - chr4_2:72792597-72792616 Msa0620990:CDS 25.0%
!! AACAAAAGTTAACCCATTTT+AGG + chr4_2:72792613-72792632 None:intergenic 25.0%
!!! ATTTTGATGTAGATTGTTGT+GGG - chr4_2:72792666-72792685 Msa0620990:intron 25.0%
! GTAGTAATTAAATCTCTTAG+TGG - chr4_2:72792741-72792760 Msa0620990:intron 25.0%
! ATAAACTGATTATCCAAACA+GGG + chr4_2:72792790-72792809 None:intergenic 25.0%
! AATAAACTGATTATCCAAAC+AGG + chr4_2:72792791-72792810 None:intergenic 25.0%
! AAACAACTGAACACAATTAA+GGG + chr4_2:72793041-72793060 None:intergenic 25.0%
! AAAACAACTGAACACAATTA+AGG + chr4_2:72793042-72793061 None:intergenic 25.0%
!! GAATTTTATAGTCATTTGCA+AGG - chr4_2:72793119-72793138 Msa0620990:intron 25.0%
!!! TATCCAGATATGTTTTTGAT+GGG - chr4_2:72793291-72793310 Msa0620990:intron 25.0%
! GAGATATCTTGTATTAAATC+AGG - chr4_2:72793545-72793564 Msa0620990:intron 25.0%
!!! AAAAGACTTTTAAGACTCAT+GGG - chr4_2:72793798-72793817 Msa0620990:intron 25.0%
! GCTATTTAAGAAAACCTAAA+GGG + chr4_2:72794247-72794266 None:intergenic 25.0%
!! TGCTATTTAAGAAAACCTAA+AGG + chr4_2:72794248-72794267 None:intergenic 25.0%
! CTTTGAATAAAAATTAAGGG+AGG + chr4_2:72794305-72794324 None:intergenic 25.0%
!! GTCGCTTTGAATAAAAATTA+AGG + chr4_2:72794309-72794328 None:intergenic 25.0%
! AGTGTTTAGTTAAAAAGTAG+AGG - chr4_2:72794828-72794847 Msa0620990:intron 25.0%
! GTGTTTAGTTAAAAAGTAGA+GGG - chr4_2:72794829-72794848 Msa0620990:intron 25.0%
! TGTTTAGTTAAAAAGTAGAG+GGG - chr4_2:72794830-72794849 Msa0620990:intron 25.0%
!! ATATCTCATGTTTCAGATTT+TGG - chr4_2:72795270-72795289 Msa0620990:CDS 25.0%
!! ATTGACTTATGTATACTTTC+TGG - chr4_2:72795322-72795341 Msa0620990:intron 25.0%
! CATTAAAGATCCAAATATAC+AGG + chr4_2:72795683-72795702 None:intergenic 25.0%
! TGTAAAATGTGTCATATAAG+TGG + chr4_2:72795712-72795731 None:intergenic 25.0%
!! ATGAAGTACTTAATCTTAAG+TGG - chr4_2:72795893-72795912 Msa0620990:intron 25.0%
! ATAGTTATTACTTCTTCATC+TGG + chr4_2:72795925-72795944 None:intergenic 25.0%
!!! AATTTTTTGGCAAGATAATC+AGG - chr4_2:72796027-72796046 Msa0620990:intron 25.0%
!!! ACATTTCTAGTAAATGAGAA+TGG - chr4_2:72796081-72796100 Msa0620990:intron 25.0%
!!! CATTTCTAGTAAATGAGAAT+GGG - chr4_2:72796082-72796101 Msa0620990:intron 25.0%
! CTTAAAAAATGATTCCAATC+TGG + chr4_2:72796352-72796371 None:intergenic 25.0%
! TTTGAATGTTTAACACATAG+TGG + chr4_2:72796444-72796463 None:intergenic 25.0%
!! ACATTCAAAATTGTTGTTGA+AGG - chr4_2:72796455-72796474 Msa0620990:intron 25.0%
!! ATAATTCATGATCTAGTTTC+AGG + chr4_2:72796572-72796591 None:intergenic 25.0%
! AACATTATGAAAACTATGCA+AGG + chr4_2:72796600-72796619 None:intergenic 25.0%
! CATTATTCATGCATTTGATA+TGG - chr4_2:72796752-72796771 Msa0620990:intron 25.0%
! TTATTCATGCATTTGATATG+GGG - chr4_2:72796754-72796773 Msa0620990:intron 25.0%
! TAAAATAAAGGAACACAAAG+GGG + chr4_2:72796940-72796959 None:intergenic 25.0%
!!! TCAATTTTTTTTCTCAGATG+TGG + chr4_2:72796993-72797012 None:intergenic 25.0%
! TTCCTTTAGCATAAGTATAT+AGG - chr4_2:72797479-72797498 Msa0620990:intron 25.0%
!!! AAACTTTTAAGAAGTCTCAT+TGG - chr4_2:72797529-72797548 Msa0620990:intron 25.0%
! ATAAAGTAGAAATGAAAAGG+AGG + chr4_2:72797690-72797709 None:intergenic 25.0%
!! TTTTCTGTAATAGATTGAAC+AGG + chr4_2:72797741-72797760 None:intergenic 25.0%
!!! TATCAATTTGTTTTCATGGT+AGG + chr4_2:72797856-72797875 None:intergenic 25.0%
! AAAAAGAAACTAATCCTACA+AGG - chr4_2:72797928-72797947 Msa0620990:intron 25.0%
! AATTATCCTAATTACCTTGT+AGG + chr4_2:72797945-72797964 None:intergenic 25.0%
! AAAACAGTAACATATTATGC+AGG + chr4_2:72798082-72798101 None:intergenic 25.0%
!! TGCATAATATGTTACTGTTT+TGG - chr4_2:72798081-72798100 Msa0620990:intron 25.0%
! GTAGAATCATAGATGTTAAT+AGG + chr4_2:72798334-72798353 None:intergenic 25.0%
! CAAGTTAAATTAACTCGAAA+AGG + chr4_2:72798535-72798554 None:intergenic 25.0%
AATTCTCATTCAAACAACGA+TGG - chr4_2:72792326-72792345 Msa0620990:three_prime_UTR 30.0%
ATTCTCATTCAAACAACGAT+GGG - chr4_2:72792327-72792346 Msa0620990:three_prime_UTR 30.0%
!! TTGTTCTCCTTCATTGATTT+GGG + chr4_2:72792506-72792525 None:intergenic 30.0%
! TTTGTTCTCCTTCATTGATT+TGG + chr4_2:72792507-72792526 None:intergenic 30.0%
ATTTACCAGTTTCTTGTAAG+TGG - chr4_2:72792575-72792594 Msa0620990:CDS 30.0%
!! GATTTTGATGTAGATTGTTG+TGG - chr4_2:72792665-72792684 Msa0620990:intron 30.0%
TCCAAGATAGCTTATGAAAA+CGG + chr4_2:72792901-72792920 None:intergenic 30.0%
TTTCATAAGTTCTTCCAAAC+AGG - chr4_2:72792964-72792983 Msa0620990:intron 30.0%
CAAAACGACTTATTCTCATA+TGG + chr4_2:72793236-72793255 None:intergenic 30.0%
!! GTATCCAGATATGTTTTTGA+TGG - chr4_2:72793290-72793309 Msa0620990:intron 30.0%
AGAATCAAGAGCTGAAAAAA+CGG - chr4_2:72793330-72793349 Msa0620990:intron 30.0%
!! CTGAAAAAACGGTATTTTTG+CGG - chr4_2:72793341-72793360 Msa0620990:intron 30.0%
!! TGAAAAAACGGTATTTTTGC+GGG - chr4_2:72793342-72793361 Msa0620990:intron 30.0%
!!! AATGGATTGAAACAAGGTTT+TGG - chr4_2:72793712-72793731 Msa0620990:intron 30.0%
!!! CAAAAGACTTTTAAGACTCA+TGG - chr4_2:72793797-72793816 Msa0620990:intron 30.0%
!!! CATTTTAGTTTTCAAGAAGG+TGG + chr4_2:72793990-72794009 None:intergenic 30.0%
ATTTAAGAAAACCTAAAGGG+AGG + chr4_2:72794244-72794263 None:intergenic 30.0%
CTAACGATGTTACATAACAA+TGG + chr4_2:72794340-72794359 None:intergenic 30.0%
TAATATACCACAGTCTAGTA+TGG + chr4_2:72794431-72794450 None:intergenic 30.0%
TTTGATGAGATACGAAAAGT+AGG - chr4_2:72794610-72794629 Msa0620990:intron 30.0%
! TGCTATTTAAGAAGACCTTA+AGG - chr4_2:72794860-72794879 Msa0620990:intron 30.0%
GCTATTTAAGAAGACCTTAA+GGG - chr4_2:72794861-72794880 Msa0620990:CDS 30.0%
ATTAGATGGCGAAGAAATTT+AGG + chr4_2:72795136-72795155 None:intergenic 30.0%
TAAATTTCTTCGCCATCTAA+TGG - chr4_2:72795135-72795154 Msa0620990:intron 30.0%
TTCAAAGAAGATTCCAGTAA+TGG - chr4_2:72795165-72795184 Msa0620990:intron 30.0%
!! ATACATTTTGAAAGCAGTCA+AGG + chr4_2:72795217-72795236 None:intergenic 30.0%
TTGACTGCTTTCAAAATGTA+TGG - chr4_2:72795216-72795235 Msa0620990:intron 30.0%
TGACTGCTTTCAAAATGTAT+GGG - chr4_2:72795217-72795236 Msa0620990:intron 30.0%
TAAGTCAATAAATTGGTCCA+TGG + chr4_2:72795311-72795330 None:intergenic 30.0%
! TGTTTAGAGTTGAGTTTCAT+TGG - chr4_2:72796146-72796165 Msa0620990:intron 30.0%
! GTTTAGAGTTGAGTTTCATT+GGG - chr4_2:72796147-72796166 Msa0620990:intron 30.0%
GTATTTCCAGAAAGAAAGTT+AGG + chr4_2:72796330-72796349 None:intergenic 30.0%
! AACATTTATGGTCAGACTTT+TGG - chr4_2:72796498-72796517 Msa0620990:intron 30.0%
AAGAAAAACTAAATCACAGC+AGG + chr4_2:72796524-72796543 None:intergenic 30.0%
TAGTTTCAGGAAGACAAATA+CGG + chr4_2:72796559-72796578 None:intergenic 30.0%
CAATTTAATGCGACTTATCA+TGG + chr4_2:72796682-72796701 None:intergenic 30.0%
AACGTTAAGACAAACATTGT+TGG - chr4_2:72796804-72796823 Msa0620990:intron 30.0%
ACGTTAAGACAAACATTGTT+GGG - chr4_2:72796805-72796824 Msa0620990:intron 30.0%
!! ATTGAAAACACTGATTTGTG+TGG - chr4_2:72796843-72796862 Msa0620990:CDS 30.0%
ATTTGTTCACTAACTGGATT+TGG - chr4_2:72796896-72796915 Msa0620990:intron 30.0%
AAAATAAAGGAACACAAAGG+GGG + chr4_2:72796939-72796958 None:intergenic 30.0%
!!! TTTTTTTTCTCAGATGTGGA+AGG + chr4_2:72796989-72797008 None:intergenic 30.0%
! AAAATTGAAGTACCAGAAAC+AGG - chr4_2:72797005-72797024 Msa0620990:intron 30.0%
TTGGTAAAAATTCCTGTTTC+TGG + chr4_2:72797020-72797039 None:intergenic 30.0%
! ATTTTGCTACACTTAATGAC+AGG - chr4_2:72797075-72797094 Msa0620990:intron 30.0%
AGACAAATTATGCATTAGCA+TGG + chr4_2:72797308-72797327 None:intergenic 30.0%
AGCCTATATACTTATGCTAA+AGG + chr4_2:72797484-72797503 None:intergenic 30.0%
TTGTTTCAAGCCTAATCAAT+GGG + chr4_2:72797576-72797595 None:intergenic 30.0%
! GAAACAAGTTTCCATTGATT+AGG - chr4_2:72797589-72797608 Msa0620990:intron 30.0%
! GTTTGGTATGATTGATGATT+TGG - chr4_2:72797772-72797791 Msa0620990:intron 30.0%
ACTAATCCTACAAGGTAATT+AGG - chr4_2:72797936-72797955 Msa0620990:intron 30.0%
!!! ATGTACTCTTTTTTCTTGAC+AGG - chr4_2:72798126-72798145 Msa0620990:intron 30.0%
TGAATGATGCTAAAGCTAAA+GGG - chr4_2:72798158-72798177 Msa0620990:intron 30.0%
CGGTAAGAAGAAAAAATAGT+TGG - chr4_2:72798207-72798226 Msa0620990:CDS 30.0%
AGTTGGATTTGTATCTTAGA+TGG - chr4_2:72798224-72798243 Msa0620990:CDS 30.0%
GTTGGATTTGTATCTTAGAT+GGG - chr4_2:72798225-72798244 Msa0620990:CDS 30.0%
AGATGTTAATAGGTGCAAAA+GGG + chr4_2:72798324-72798343 None:intergenic 30.0%
TAGATGTTAATAGGTGCAAA+AGG + chr4_2:72798325-72798344 None:intergenic 30.0%
CAAAAAACCAAAGAAAAGAG+AGG + chr4_2:72798356-72798375 None:intergenic 30.0%
!!! TTTCTTTGGTTTTTTGCAGT+TGG - chr4_2:72798360-72798379 Msa0620990:intron 30.0%
GTTTGAATGAGAATTTGCAG+AGG + chr4_2:72792321-72792340 None:intergenic 35.0%
TCAAACAACGATGGGTATTA+AGG - chr4_2:72792335-72792354 Msa0620990:three_prime_UTR 35.0%
TAATGCTCCCAAATCAATGA+AGG - chr4_2:72792496-72792515 Msa0620990:intron 35.0%
TAGCATCAACAGCAATCTTA+CGG + chr4_2:72792547-72792566 None:intergenic 35.0%
TGAAACCACTTACAAGAAAC+TGG + chr4_2:72792583-72792602 None:intergenic 35.0%
! GAAATGTTGACTAATGAAGC+TGG - chr4_2:72792702-72792721 Msa0620990:intron 35.0%
AGATAAGCTTAATCCCTGTT+TGG - chr4_2:72792774-72792793 Msa0620990:intron 35.0%
TCAAATAACCTGATCCAAAC+AGG - chr4_2:72793015-72793034 Msa0620990:intron 35.0%
! GCATTGGTAAAAATCGACAA+GGG + chr4_2:72793268-72793287 None:intergenic 35.0%
!! AGCATTGGTAAAAATCGACA+AGG + chr4_2:72793269-72793288 None:intergenic 35.0%
CTTCCCATCAAAAACATATC+TGG + chr4_2:72793297-72793316 None:intergenic 35.0%
!! GAAAAAACGGTATTTTTGCG+GGG - chr4_2:72793343-72793362 Msa0620990:intron 35.0%
! GAGGTATATGCATAGTTTGT+TGG - chr4_2:72793497-72793516 Msa0620990:intron 35.0%
AAATCAGGATATTCATCCCT+TGG - chr4_2:72793560-72793579 Msa0620990:intron 35.0%
! CTGATCTTTGTTGTCATTTC+AGG - chr4_2:72793583-72793602 Msa0620990:intron 35.0%
TGTACAATGAGTTCACCATT+TGG - chr4_2:72793870-72793889 Msa0620990:intron 35.0%
! AATTTGAAGCCTTAGCCAAA+TGG + chr4_2:72793888-72793907 None:intergenic 35.0%
! AATCCTTTTCATACAGACCA+TGG - chr4_2:72794029-72794048 Msa0620990:intron 35.0%
TTTCCATGGTCTGTATGAAA+AGG + chr4_2:72794035-72794054 None:intergenic 35.0%
! TCCTTTTCAAACACACTTCA+TGG - chr4_2:72794183-72794202 Msa0620990:intron 35.0%
TCCATGAAGTGTGTTTGAAA+AGG + chr4_2:72794187-72794206 None:intergenic 35.0%
ACGATGTTACATAACAATGG+AGG + chr4_2:72794337-72794356 None:intergenic 35.0%
AAAATATCTCATGGAGTGTG+AGG + chr4_2:72794396-72794415 None:intergenic 35.0%
! ACTCCATGAGATATTTTCTC+TGG - chr4_2:72794399-72794418 Msa0620990:CDS 35.0%
CAACCAGAGAAAATATCTCA+TGG + chr4_2:72794405-72794424 None:intergenic 35.0%
! GAAGGAAATAGCTTTTCACT+TGG - chr4_2:72794551-72794570 Msa0620990:CDS 35.0%
TTGGAGATAGACATTCGTTT+AGG - chr4_2:72794570-72794589 Msa0620990:intron 35.0%
ATAGAAGGTAACAGGAAGAA+TGG + chr4_2:72794709-72794728 None:intergenic 35.0%
TTCTTCCTGTTACCTTCTAT+TGG - chr4_2:72794709-72794728 Msa0620990:intron 35.0%
GAATGAAAACCACCAATAGA+AGG + chr4_2:72794724-72794743 None:intergenic 35.0%
ATTTAAGAAGACCTTAAGGG+AGG - chr4_2:72794864-72794883 Msa0620990:CDS 35.0%
TATTATACAGGTGTATGCTG+TGG - chr4_2:72795075-72795094 Msa0620990:intron 35.0%
TTGAACTAGGATCCATTAGA+TGG + chr4_2:72795150-72795169 None:intergenic 35.0%
ACTGGAATCTTCTTTGAACT+AGG + chr4_2:72795163-72795182 None:intergenic 35.0%
AATGGAATTTGACGTTGCAA+AGG - chr4_2:72795183-72795202 Msa0620990:intron 35.0%
TTGAAAGCAGTCAAGGATAA+CGG + chr4_2:72795210-72795229 None:intergenic 35.0%
! TCTCATGTTTCAGATTTTGG+AGG - chr4_2:72795273-72795292 Msa0620990:CDS 35.0%
TAATAATCAATGTGTGCCAC+AGG - chr4_2:72795467-72795486 Msa0620990:CDS 35.0%
!!! TTTTTTCAATAGAGCCGTGT+TGG + chr4_2:72795526-72795545 None:intergenic 35.0%
CGGCTCTATTGAAAAAATAC+TGG - chr4_2:72795529-72795548 Msa0620990:intron 35.0%
TGGAAAACATAAGCAAAGAG+AGG - chr4_2:72795549-72795568 Msa0620990:intron 35.0%
!!! TTTTCAAGTGCATGCAATAG+AGG - chr4_2:72795604-72795623 Msa0620990:CDS 35.0%
TGCATTACGAATCAGATATC+TGG - chr4_2:72795657-72795676 Msa0620990:CDS 35.0%
AGATATCTGGCCTGTATATT+TGG - chr4_2:72795670-72795689 Msa0620990:CDS 35.0%
GTTATTACTTCTTCATCTGG+AGG + chr4_2:72795922-72795941 None:intergenic 35.0%
AGTATTCTTTCAAAGGGACA+AGG - chr4_2:72795962-72795981 Msa0620990:intron 35.0%
TGCATGTTGTCTTTCTTACA+GGG - chr4_2:72796051-72796070 Msa0620990:intron 35.0%
! TCTTTCTGGAAATACCAGAT+TGG - chr4_2:72796335-72796354 Msa0620990:intron 35.0%
ATCCATCAGTACCTATCAAA+CGG - chr4_2:72796382-72796401 Msa0620990:intron 35.0%
GAATGTTTAACACATAGTGG+AGG + chr4_2:72796441-72796460 None:intergenic 35.0%
ATTCTCCACCAGAACATTTA+TGG - chr4_2:72796486-72796505 Msa0620990:intron 35.0%
AAGTCTGACCATAAATGTTC+TGG + chr4_2:72796497-72796516 None:intergenic 35.0%
AAGAGGATGAAAATTAAGCG+AGG + chr4_2:72796624-72796643 None:intergenic 35.0%
CATCGATATGACATCATAAG+AGG + chr4_2:72796641-72796660 None:intergenic 35.0%
!!! GCATTTTAAAGTCCGAGATA+TGG - chr4_2:72796724-72796743 Msa0620990:intron 35.0%
! GTGAACAAATGATGGGATAA+AGG + chr4_2:72796886-72796905 None:intergenic 35.0%
CCAGTTAGTGAACAAATGAT+GGG + chr4_2:72796893-72796912 None:intergenic 35.0%
TCCAGTTAGTGAACAAATGA+TGG + chr4_2:72796894-72796913 None:intergenic 35.0%
AAATAAAGGAACACAAAGGG+GGG + chr4_2:72796938-72796957 None:intergenic 35.0%
GACATCTTATGATCAATTGC+CGG + chr4_2:72797130-72797149 None:intergenic 35.0%
TTGGAACACAGACTATAGAT+CGG + chr4_2:72797208-72797227 None:intergenic 35.0%
! TTAGCATGGATTGACATTGA+AGG + chr4_2:72797294-72797313 None:intergenic 35.0%
TAAAACTACATCAGGCCTTA+CGG - chr4_2:72797376-72797395 Msa0620990:intron 35.0%
!! TAACTCTGAAATGTTGTTCC+TGG - chr4_2:72797445-72797464 Msa0620990:CDS 35.0%
AAAGGAACTAAAGTGAAACC+AGG + chr4_2:72797466-72797485 None:intergenic 35.0%
AGCATAAGTATATAGGCTTC+TGG - chr4_2:72797486-72797505 Msa0620990:intron 35.0%
! GAAACAAGTTCCCATTGATT+AGG - chr4_2:72797563-72797582 Msa0620990:intron 35.0%
CTTGTTTCAAGCCTAATCAA+TGG + chr4_2:72797577-72797596 None:intergenic 35.0%
! TGTTTGAGATTGAGGCTTAT+TGG + chr4_2:72797717-72797736 None:intergenic 35.0%
ATATGAGAAGTAATCTCCAG+TGG - chr4_2:72797890-72797909 Msa0620990:intron 35.0%
! TGAGTATCTAAAACTACCAC+TGG + chr4_2:72797909-72797928 None:intergenic 35.0%
AGGCTTCTTGTTAGAAGATA+TGG + chr4_2:72797979-72797998 None:intergenic 35.0%
!! TATCCGCGTGTATTTTGAAA+AGG + chr4_2:72798015-72798034 None:intergenic 35.0%
!!! TGTTACTGTTTTGGTTCTGT+AGG - chr4_2:72798090-72798109 Msa0620990:CDS 35.0%
! AAAGAGTACATGTCAAACCA+TGG + chr4_2:72798117-72798136 None:intergenic 35.0%
!! TTAGCTTTAGCATCATTCAC+TGG + chr4_2:72798157-72798176 None:intergenic 35.0%
GTGAATGATGCTAAAGCTAA+AGG - chr4_2:72798157-72798176 Msa0620990:intron 35.0%
AGGGAGTAACAAGAAAACTA+AGG - chr4_2:72798177-72798196 Msa0620990:intron 35.0%
AGTAACAAGAAAACTAAGGC+CGG - chr4_2:72798181-72798200 Msa0620990:intron 35.0%
AAACATCTACAACACTAACC+TGG + chr4_2:72798271-72798290 None:intergenic 35.0%
! GATTCTACCTCTCTTTTCTT+TGG - chr4_2:72798346-72798365 Msa0620990:intron 35.0%
TTGTGATACAATGCTTCATG+TGG - chr4_2:72798490-72798509 Msa0620990:five_prime_UTR 35.0%
TGACGGCAGAAAGATGAATA+AGG + chr4_2:72792280-72792299 None:intergenic 40.0%
TAATGTGAACTGGAGTGTGA+CGG + chr4_2:72792297-72792316 None:intergenic 40.0%
TTGCAGAGGATAATGTGAAC+TGG + chr4_2:72792307-72792326 None:intergenic 40.0%
! GGGTTTAACGAAGCTTTTAG+CGG - chr4_2:72792472-72792491 Msa0620990:intron 40.0%
TAGATTGTTGTGGGAAGAAG+TGG - chr4_2:72792675-72792694 Msa0620990:intron 40.0%
ATGAAGCTGGTGAAGTTACT+AGG - chr4_2:72792715-72792734 Msa0620990:intron 40.0%
!! GCCGTTTTCATAAGCTATCT+TGG - chr4_2:72792897-72792916 Msa0620990:intron 40.0%
AACACAATTAAGGGCCTGTT+TGG + chr4_2:72793032-72793051 None:intergenic 40.0%
ATTTGCAAGGAATGTTTGCG+CGG - chr4_2:72793132-72793151 Msa0620990:intron 40.0%
! ACAATCAGACTTCTAGAAGC+CGG - chr4_2:72793155-72793174 Msa0620990:intron 40.0%
ACATATCTGGATACGAGCAT+TGG + chr4_2:72793284-72793303 None:intergenic 40.0%
AGCTCTTGATTCTTCATCTC+CGG + chr4_2:72793323-72793342 None:intergenic 40.0%
! TTGTTGGCGACTTTTCTATG+TGG - chr4_2:72793513-72793532 Msa0620990:intron 40.0%
TGACAACAAAGATCAGCCAA+GGG + chr4_2:72793579-72793598 None:intergenic 40.0%
ATGACAACAAAGATCAGCCA+AGG + chr4_2:72793580-72793599 None:intergenic 40.0%
ATTCAGTAAACGGACAGTGA+AGG - chr4_2:72793631-72793650 Msa0620990:intron 40.0%
ATGAGTTCACCATTTGGCTA+AGG - chr4_2:72793876-72793895 Msa0620990:intron 40.0%
TCTTCCACTCTTTGCAAAAC+TGG - chr4_2:72794089-72794108 Msa0620990:intron 40.0%
CACTCTTTGCAAAACTGGAA+CGG - chr4_2:72794094-72794113 Msa0620990:intron 40.0%
AATTACACTCACCTCCCTTT+AGG - chr4_2:72794230-72794249 Msa0620990:intron 40.0%
! GTTGATTCCATACTAGACTG+TGG - chr4_2:72794421-72794440 Msa0620990:CDS 40.0%
CACAATAATTCGCCATTGCT+TGG + chr4_2:72794502-72794521 None:intergenic 40.0%
CAATGGCGAATTATTGTGAC+CGG - chr4_2:72794504-72794523 Msa0620990:intron 40.0%
AATTATTGTGACCGGTGGTA+TGG - chr4_2:72794512-72794531 Msa0620990:intron 40.0%
! GGTGTCGTATGAACAAATGA+AGG - chr4_2:72794533-72794552 Msa0620990:CDS 40.0%
GAGATAGACATTCGTTTAGG+TGG - chr4_2:72794573-72794592 Msa0620990:intron 40.0%
TGCGAAGAGGATTAAAAACG+TGG - chr4_2:72794635-72794654 Msa0620990:intron 40.0%
GCGAAGAGGATTAAAAACGT+GGG - chr4_2:72794636-72794655 Msa0620990:intron 40.0%
TTCCTGTTACCTTCTATTGG+TGG - chr4_2:72794712-72794731 Msa0620990:intron 40.0%
AACCACCAATAGAAGGTAAC+AGG + chr4_2:72794717-72794736 None:intergenic 40.0%
! GTGGTTTTCATTCGCAATGT+GGG - chr4_2:72794731-72794750 Msa0620990:intron 40.0%
! TTTTCATTCGCAATGTGGGT+GGG - chr4_2:72794735-72794754 Msa0620990:intron 40.0%
! GTGCTTGAGAGTATAACCAA+TGG - chr4_2:72794763-72794782 Msa0620990:intron 40.0%
! TGAGAGTATAACCAATGGTG+CGG - chr4_2:72794768-72794787 Msa0620990:intron 40.0%
AATTACACTCACCTCCCTTA+AGG + chr4_2:72794878-72794897 None:intergenic 40.0%
GACATGGATTCCTTAACGTT+TGG - chr4_2:72795106-72795125 Msa0620990:intron 40.0%
TTTAGGAGCTCCAAACGTTA+AGG + chr4_2:72795119-72795138 None:intergenic 40.0%
GCAACGTCAAATTCCATTAC+TGG + chr4_2:72795181-72795200 None:intergenic 40.0%
GATTACTGTGACAACATTCG+AGG - chr4_2:72795349-72795368 Msa0620990:intron 40.0%
!! TTTGTCCCGCTTTTATCCAA+CGG - chr4_2:72795377-72795396 Msa0620990:intron 40.0%
!! TTCAAGTTTACCACCGATTC+AGG - chr4_2:72795797-72795816 Msa0620990:intron 40.0%
!! ACGACTTTTTAAAGAGCCAG+AGG - chr4_2:72795858-72795877 Msa0620990:intron 40.0%
TCATCATCAGTTATGACCTC+TGG + chr4_2:72795877-72795896 None:intergenic 40.0%
CTGCATGTTGTCTTTCTTAC+AGG - chr4_2:72796050-72796069 Msa0620990:intron 40.0%
GCATGTTGTCTTTCTTACAG+GGG - chr4_2:72796052-72796071 Msa0620990:intron 40.0%
! AGAATGGGTTCAACAGTGAT+AGG - chr4_2:72796097-72796116 Msa0620990:intron 40.0%
! GAATGGGTTCAACAGTGATA+GGG - chr4_2:72796098-72796117 Msa0620990:intron 40.0%
GCAAAGAACAAGTCATCACA+AGG - chr4_2:72796243-72796262 Msa0620990:intron 40.0%
GCACGACAAGACAATAGAAA+AGG + chr4_2:72796308-72796327 None:intergenic 40.0%
!! TTCCGTTTGATAGGTACTGA+TGG + chr4_2:72796387-72796406 None:intergenic 40.0%
ATCAGTACCTATCAAACGGA+AGG - chr4_2:72796386-72796405 Msa0620990:intron 40.0%
GTACATACCTTCCGTTTGAT+AGG + chr4_2:72796396-72796415 None:intergenic 40.0%
! CAAAATTGTTGTTGAAGGCC+TGG - chr4_2:72796460-72796479 Msa0620990:intron 40.0%
TCTGACCATAAATGTTCTGG+TGG + chr4_2:72796494-72796513 None:intergenic 40.0%
CCCATCATTTGTTCACTAAC+TGG - chr4_2:72796890-72796909 Msa0620990:intron 40.0%
CGTGCTTAGATCTTTCAAAC+CGG - chr4_2:72797108-72797127 Msa0620990:intron 40.0%
TGCGAATTTCTAACTGCTCA+AGG - chr4_2:72797155-72797174 Msa0620990:CDS 40.0%
AGACAATGGCATGGAAAGAT+TGG + chr4_2:72797227-72797246 None:intergenic 40.0%
ATTGACATTGAAGGTTCACC+AGG + chr4_2:72797285-72797304 None:intergenic 40.0%
AGTCATCTCTGCCTAATCAA+TGG + chr4_2:72797603-72797622 None:intergenic 40.0%
ATTGATTAGGCAGAGATGAC+TGG - chr4_2:72797602-72797621 Msa0620990:intron 40.0%
! GAACAGGTTGTTTGAGATTG+AGG + chr4_2:72797725-72797744 None:intergenic 40.0%
! GAAAAGGCTGTTGCTTCATT+AGG + chr4_2:72797999-72798018 None:intergenic 40.0%
! CAGCCTTTTCAAAATACACG+CGG - chr4_2:72798009-72798028 Msa0620990:intron 40.0%
!!! TTTTTTCTTCTTACCGCCAC+CGG + chr4_2:72798203-72798222 None:intergenic 40.0%
GAGTCATTTACATGTTGACC+AGG - chr4_2:72798250-72798269 Msa0620990:CDS 40.0%
GGACAGTCACAAAAATTAGC+TGG + chr4_2:72798303-72798322 None:intergenic 40.0%
!!! GTTTTTTGCAGTTGGCATGA+AGG - chr4_2:72798368-72798387 Msa0620990:intron 40.0%
AGTTCTTCCAAACAGGCTCA+CGG - chr4_2:72792971-72792990 Msa0620990:intron 45.0%
ATAAGTTCCGTGAGCCTGTT+TGG + chr4_2:72792981-72793000 None:intergenic 45.0%
ATTAAGGGCCTGTTTGGATC+AGG + chr4_2:72793026-72793045 None:intergenic 45.0%
! CAATCAGACTTCTAGAAGCC+GGG - chr4_2:72793156-72793175 Msa0620990:intron 45.0%
!! GAATTACACTGGCTTCATCC+CGG + chr4_2:72793177-72793196 None:intergenic 45.0%
!! TGTTTTTGATGGGAAGCCAC+CGG - chr4_2:72793301-72793320 Msa0620990:intron 45.0%
TCTTGATTCTTCATCTCCGG+TGG + chr4_2:72793320-72793339 None:intergenic 45.0%
GTCATTTCAGGCTGACAACA+AGG - chr4_2:72793595-72793614 Msa0620990:intron 45.0%
GCTAAGGCTTCAAATTCTGC+AGG - chr4_2:72793892-72793911 Msa0620990:intron 45.0%
TGCACTTTGCAAAGCTGGAA+AGG - chr4_2:72793943-72793962 Msa0620990:intron 45.0%
! CGTTCCAGTTTTGCAAAGAG+TGG + chr4_2:72794096-72794115 None:intergenic 45.0%
GAGCTTAAAGCTCCAAGCAA+TGG - chr4_2:72794487-72794506 Msa0620990:intron 45.0%
TTCATACGACACCATACCAC+CGG + chr4_2:72794526-72794545 None:intergenic 45.0%
CGAAAAGTAGGTTTGCGAAG+AGG - chr4_2:72794622-72794641 Msa0620990:intron 45.0%
! GGTGGTTTTCATTCGCAATG+TGG - chr4_2:72794730-72794749 Msa0620990:intron 45.0%
! GTTTTCATTCGCAATGTGGG+TGG - chr4_2:72794734-72794753 Msa0620990:intron 45.0%
TTTCATTCGCAATGTGGGTG+GGG - chr4_2:72794736-72794755 Msa0620990:intron 45.0%
GACAATAATAGCCGCACCAT+TGG + chr4_2:72794782-72794801 None:intergenic 45.0%
!! TTGTCCCGCTTTTATCCAAC+GGG - chr4_2:72795378-72795397 Msa0620990:intron 45.0%
TAGCACCCGTTGGATAAAAG+CGG + chr4_2:72795386-72795405 None:intergenic 45.0%
TCAATGTGTGCCACAGGTAT+TGG - chr4_2:72795473-72795492 Msa0620990:CDS 45.0%
CAATGTGTGCCACAGGTATT+GGG - chr4_2:72795474-72795493 Msa0620990:CDS 45.0%
! AATGTGTGCCACAGGTATTG+GGG - chr4_2:72795475-72795494 Msa0620990:CDS 45.0%
CAACAGTGATAGGGTGACAA+AGG - chr4_2:72796107-72796126 Msa0620990:intron 45.0%
AGAACAAGTCATCACAAGGC+CGG - chr4_2:72796247-72796266 Msa0620990:intron 45.0%
GTCGTGCCTAACTTTCTTTC+TGG - chr4_2:72796321-72796340 Msa0620990:intron 45.0%
!! GGTACTGATGGATTTGCAGT+TGG + chr4_2:72796375-72796394 None:intergenic 45.0%
AGTGGAGGTGATAGATGTAG+TGG + chr4_2:72796426-72796445 None:intergenic 45.0%
!! ACACTGATTTGTGTGGCAAC+TGG - chr4_2:72796850-72796869 Msa0620990:CDS 45.0%
GCAGTTAGAAATTCGCAGAG+AGG + chr4_2:72797152-72797171 None:intergenic 45.0%
TTCTAACTGCTCAAGGTCCA+TGG - chr4_2:72797162-72797181 Msa0620990:CDS 45.0%
! TGCTCAAGGTCCATGGTTTT+TGG - chr4_2:72797169-72797188 Msa0620990:CDS 45.0%
TATAGATCGGCATGCTCAAC+TGG + chr4_2:72797195-72797214 None:intergenic 45.0%
CTTTCCATGCCATTGTCTAG+AGG - chr4_2:72797229-72797248 Msa0620990:intron 45.0%
AAGCAGACACCTCTAGACAA+TGG + chr4_2:72797241-72797260 None:intergenic 45.0%
!! TTGTCTAGAGGTGTCTGCTT+TGG - chr4_2:72797241-72797260 Msa0620990:intron 45.0%
!!! GTTTTGGTTCTGTAGGTCCA+TGG - chr4_2:72798097-72798116 Msa0620990:CDS 45.0%
AACAAGAAAACTAAGGCCGG+TGG - chr4_2:72798184-72798203 Msa0620990:intron 45.0%
! TTTTGCAGTTGGCATGAAGG+AGG - chr4_2:72798371-72798390 Msa0620990:intron 45.0%
TTTGCAGTTGGCATGAAGGA+GGG - chr4_2:72798372-72798391 Msa0620990:intron 45.0%
!!! TTCAATTTTTAATATTATAA+TGG - chr4_2:72793694-72793713 Msa0620990:intron 5.0%
TGCAACGTCACCTCAACAAC+AGG + chr4_2:72793828-72793847 None:intergenic 50.0%
CATTGAGCCTCTGCTTCTGA+GGG + chr4_2:72793920-72793939 None:intergenic 50.0%
ACATTGAGCCTCTGCTTCTG+AGG + chr4_2:72793921-72793940 None:intergenic 50.0%
TGTGCTGCACTTTGCAAAGC+TGG - chr4_2:72793938-72793957 Msa0620990:intron 50.0%
ATCTCATGGAGTGTGAGGCA+GGG + chr4_2:72794391-72794410 None:intergenic 50.0%
TATCTCATGGAGTGTGAGGC+AGG + chr4_2:72794392-72794411 None:intergenic 50.0%
GTTAACATGTGGGACGAGCT+TGG - chr4_2:72794457-72794476 Msa0620990:intron 50.0%
TGGCGAATTATTGTGACCGG+TGG - chr4_2:72794507-72794526 Msa0620990:intron 50.0%
! TGCTGTGGCTTCTGAAGACA+TGG - chr4_2:72795090-72795109 Msa0620990:intron 50.0%
GGAGGAGCTAGATTTGACCA+TGG - chr4_2:72795291-72795310 Msa0620990:intron 50.0%
AGCACCCGTTGGATAAAAGC+GGG + chr4_2:72795385-72795404 None:intergenic 50.0%
! GCTTTTATCCAACGGGTGCT+AGG - chr4_2:72795385-72795404 Msa0620990:intron 50.0%
!! ATGTGTGCCACAGGTATTGG+GGG - chr4_2:72795476-72795495 Msa0620990:CDS 50.0%
CTGAAGCTCATACGCCAACA+CGG - chr4_2:72795509-72795528 Msa0620990:intron 50.0%
!! TTACCACCGATTCAGGTACC+AGG - chr4_2:72795804-72795823 Msa0620990:intron 50.0%
CTGGTACCTGGTACCTGAAT+CGG + chr4_2:72795813-72795832 None:intergenic 50.0%
GGTACCAGGTACCAGATGAT+TGG - chr4_2:72795818-72795837 Msa0620990:intron 50.0%
! ACCAGATGATTGGCCGTATC+AGG - chr4_2:72795828-72795847 Msa0620990:intron 50.0%
TCCTGATACGGCCAATCATC+TGG + chr4_2:72795832-72795851 None:intergenic 50.0%
! AGATGATTGGCCGTATCAGG+AGG - chr4_2:72795831-72795850 Msa0620990:intron 50.0%
GTTCTGGTGGAGAATTTGCC+AGG + chr4_2:72796481-72796500 None:intergenic 50.0%
GCTCAACTGGCCAAAAACCA+TGG + chr4_2:72797182-72797201 None:intergenic 50.0%
GACACCTCTAGACAATGGCA+TGG + chr4_2:72797236-72797255 None:intergenic 50.0%
TGCCTGAAGCTGAATAGACC+TGG - chr4_2:72797264-72797283 Msa0620990:intron 50.0%
CACCAGGTCTATTCAGCTTC+AGG + chr4_2:72797269-72797288 None:intergenic 50.0%
AAGAAAACTAAGGCCGGTGG+CGG - chr4_2:72798187-72798206 Msa0620990:intron 50.0%
! CACCTTTACAGGAGAGTGCG+CGG - chr4_2:72792233-72792252 Msa0620990:three_prime_UTR 55.0%
! ACCTTTACAGGAGAGTGCGC+GGG - chr4_2:72792234-72792253 Msa0620990:three_prime_UTR 55.0%
CAGTCTCTCAAAGAGAGCCG+AGG - chr4_2:72793448-72793467 Msa0620990:intron 55.0%
TAGAGCTTCCGTCAAACCCG+CGG + chr4_2:72793477-72793496 None:intergenic 55.0%
! GGGTTTGACGGAAGCTCTAG+AGG - chr4_2:72793478-72793497 Msa0620990:intron 55.0%
!! CATGGGAGTGCCTGTTGTTG+AGG - chr4_2:72793815-72793834 Msa0620990:intron 55.0%
TGTGAGGCAGGGGAAAATGG+AGG + chr4_2:72794380-72794399 None:intergenic 55.0%
GAGTGTGAGGCAGGGGAAAA+TGG + chr4_2:72794383-72794402 None:intergenic 55.0%
TCTCATGGAGTGTGAGGCAG+GGG + chr4_2:72794390-72794409 None:intergenic 55.0%
AGCTTGAACCTAGCACCCGT+TGG + chr4_2:72795396-72795415 None:intergenic 55.0%
!! TGTGTGCCACAGGTATTGGG+GGG - chr4_2:72795477-72795496 Msa0620990:CDS 55.0%
TGTCATCCCCCCAATACCTG+TGG + chr4_2:72795486-72795505 None:intergenic 55.0%
GTACCTGGTACCTGAATCGG+TGG + chr4_2:72795810-72795829 None:intergenic 55.0%
ACGGCCAATCATCTGGTACC+TGG + chr4_2:72795825-72795844 None:intergenic 55.0%
AGTCGTCGAGCCTCCTGATA+CGG + chr4_2:72795844-72795863 None:intergenic 55.0%
CTTACGGTGCTCGACTGCTA+GGG - chr4_2:72797392-72797411 Msa0620990:intron 55.0%
TCCCGCGCACTCTCCTGTAA+AGG + chr4_2:72792238-72792257 None:intergenic 60.0%
AAAGAGAGCCGAGGCTACCG+CGG - chr4_2:72793457-72793476 Msa0620990:intron 60.0%
! CCTAGCAGTCGAGCACCGTA+AGG + chr4_2:72797394-72797413 None:intergenic 60.0%
CCTTACGGTGCTCGACTGCT+AGG - chr4_2:72797391-72797410 Msa0620990:intron 60.0%
AAGAGAGCCGAGGCTACCGC+GGG - chr4_2:72793458-72793477 Msa0620990:intron 65.0%
CGTCAAACCCGCGGTAGCCT+CGG + chr4_2:72793468-72793487 None:intergenic 65.0%
CGAGGCTACCGCGGGTTTGA+CGG - chr4_2:72793466-72793485 Msa0620990:intron 65.0%
GCAGGCACCCTCAGAAGCAG+AGG - chr4_2:72793910-72793929 Msa0620990:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 72792226 72798568 72792226 ID=Msa0620990;Name=Msa0620990
chr4_2 mRNA 72792226 72798568 72792226 ID=Msa0620990-mRNA-1;Parent=Msa0620990;Name=Msa0620990-mRNA-1;_AED=0.23;_eAED=0.23;_QI=119|0.88|0.88|1|0.82|0.83|18|236|381
chr4_2 exon 72792226 72792415 72792226 ID=Msa0620990-mRNA-1:exon:21824;Parent=Msa0620990-mRNA-1
chr4_2 exon 72792523 72792646 72792523 ID=Msa0620990-mRNA-1:exon:21823;Parent=Msa0620990-mRNA-1
chr4_2 exon 72794387 72794441 72794387 ID=Msa0620990-mRNA-1:exon:21822;Parent=Msa0620990-mRNA-1
chr4_2 exon 72794526 72794572 72794526 ID=Msa0620990-mRNA-1:exon:21821;Parent=Msa0620990-mRNA-1
chr4_2 exon 72794666 72794722 72794666 ID=Msa0620990-mRNA-1:exon:21820;Parent=Msa0620990-mRNA-1
chr4_2 exon 72794861 72794975 72794861 ID=Msa0620990-mRNA-1:exon:21819;Parent=Msa0620990-mRNA-1
chr4_2 exon 72795224 72795305 72795224 ID=Msa0620990-mRNA-1:exon:21818;Parent=Msa0620990-mRNA-1
chr4_2 exon 72795424 72795508 72795424 ID=Msa0620990-mRNA-1:exon:21817;Parent=Msa0620990-mRNA-1
chr4_2 exon 72795590 72795709 72795590 ID=Msa0620990-mRNA-1:exon:21816;Parent=Msa0620990-mRNA-1
chr4_2 exon 72796809 72796880 72796809 ID=Msa0620990-mRNA-1:exon:21815;Parent=Msa0620990-mRNA-1
chr4_2 exon 72796958 72797023 72796958 ID=Msa0620990-mRNA-1:exon:21814;Parent=Msa0620990-mRNA-1
chr4_2 exon 72797142 72797189 72797142 ID=Msa0620990-mRNA-1:exon:21813;Parent=Msa0620990-mRNA-1
chr4_2 exon 72797295 72797343 72797295 ID=Msa0620990-mRNA-1:exon:21812;Parent=Msa0620990-mRNA-1
chr4_2 exon 72797443 72797496 72797443 ID=Msa0620990-mRNA-1:exon:21811;Parent=Msa0620990-mRNA-1
chr4_2 exon 72797605 72797664 72797605 ID=Msa0620990-mRNA-1:exon:21810;Parent=Msa0620990-mRNA-1
chr4_2 exon 72798088 72798116 72798088 ID=Msa0620990-mRNA-1:exon:21809;Parent=Msa0620990-mRNA-1
chr4_2 exon 72798205 72798321 72798205 ID=Msa0620990-mRNA-1:exon:21808;Parent=Msa0620990-mRNA-1
chr4_2 exon 72798438 72798568 72798438 ID=Msa0620990-mRNA-1:exon:21807;Parent=Msa0620990-mRNA-1
chr4_2 five_prime_UTR 72798450 72798568 72798450 ID=Msa0620990-mRNA-1:five_prime_utr;Parent=Msa0620990-mRNA-1
chr4_2 CDS 72798438 72798449 72798438 ID=Msa0620990-mRNA-1:cds;Parent=Msa0620990-mRNA-1
chr4_2 CDS 72798205 72798321 72798205 ID=Msa0620990-mRNA-1:cds;Parent=Msa0620990-mRNA-1
chr4_2 CDS 72798088 72798116 72798088 ID=Msa0620990-mRNA-1:cds;Parent=Msa0620990-mRNA-1
chr4_2 CDS 72797605 72797664 72797605 ID=Msa0620990-mRNA-1:cds;Parent=Msa0620990-mRNA-1
chr4_2 CDS 72797443 72797496 72797443 ID=Msa0620990-mRNA-1:cds;Parent=Msa0620990-mRNA-1
chr4_2 CDS 72797295 72797343 72797295 ID=Msa0620990-mRNA-1:cds;Parent=Msa0620990-mRNA-1
chr4_2 CDS 72797142 72797189 72797142 ID=Msa0620990-mRNA-1:cds;Parent=Msa0620990-mRNA-1
chr4_2 CDS 72796958 72797023 72796958 ID=Msa0620990-mRNA-1:cds;Parent=Msa0620990-mRNA-1
chr4_2 CDS 72796809 72796880 72796809 ID=Msa0620990-mRNA-1:cds;Parent=Msa0620990-mRNA-1
chr4_2 CDS 72795590 72795709 72795590 ID=Msa0620990-mRNA-1:cds;Parent=Msa0620990-mRNA-1
chr4_2 CDS 72795424 72795508 72795424 ID=Msa0620990-mRNA-1:cds;Parent=Msa0620990-mRNA-1
chr4_2 CDS 72795224 72795305 72795224 ID=Msa0620990-mRNA-1:cds;Parent=Msa0620990-mRNA-1
chr4_2 CDS 72794861 72794975 72794861 ID=Msa0620990-mRNA-1:cds;Parent=Msa0620990-mRNA-1
chr4_2 CDS 72794666 72794722 72794666 ID=Msa0620990-mRNA-1:cds;Parent=Msa0620990-mRNA-1
chr4_2 CDS 72794526 72794572 72794526 ID=Msa0620990-mRNA-1:cds;Parent=Msa0620990-mRNA-1
chr4_2 CDS 72794387 72794441 72794387 ID=Msa0620990-mRNA-1:cds;Parent=Msa0620990-mRNA-1
chr4_2 CDS 72792569 72792646 72792569 ID=Msa0620990-mRNA-1:cds;Parent=Msa0620990-mRNA-1
chr4_2 three_prime_UTR 72792523 72792568 72792523 ID=Msa0620990-mRNA-1:three_prime_utr;Parent=Msa0620990-mRNA-1
chr4_2 three_prime_UTR 72792226 72792415 72792226 ID=Msa0620990-mRNA-1:three_prime_utr;Parent=Msa0620990-mRNA-1
Gene Sequence

>Msa0620990

ATGGGTATTAAGGGTTTAACGAAGCTTTTAGCGGATAATGCTCCCAAATCAATGAAGGAGAACAAATTCGAATCTTACTTTGGCCGTAAGATTGCTGTTGATGCTAGTATGAGCATTTACCAGTTTCTTATTGTTGTGGGAAGAAGTGGAACTGAAATTCATTTGCAAGGAATGTTTGCGCGGACAATCAGACTTCTAGAAGCCGGGATGAAGCCAGTATATGTTTTTGATGGGAAGCCACCGGAGATGAAGAATCAAGAGCTGAAAAAACGTCTCTCAAAGAGAGCCGAGGCTACCGCGGGTTTGACGGAAGCTCTAGAGGCTGACAACAAGGAAGATATTGAAAAATTCAGTAAACGGACAGTGAAGGTGACAAAGCAACATAATGACGACTGCAAAAGACTTTTAAGACTCATGGGAGTGCCTGTTGTTGAGGCACCCTCAGAAGCAGAGGCTCAATGTGCTGCACTTTGCAAAGCTGGAAAGGCAAGTTCAAATCTGCTGTGTGTGTATGCTGTGGCTTCTGAAGACATGGATTCCTTAACGTTTGGAGCTCCTAAATTTCTTCGCCATCTAATGGATCCTAGTTCAAAGAAGATTCCAGTAATGGAATTTGACGTTGCAAAGATTTTGGAGGAGCTAGATTTGACCATGGACCAATTTATTGACTTATGTATACTTTCTGGATGTGATTACTGTGACAACATTCGAGGTATTGGGGGGATGACAGCTCTGAAGCTCATACGCCAACACGGCTCTATTGAAAAAATACTGGAAAACATAAGCAAAGAGAGGTACCAGGTACCAGATGATTGGCCGTATCAGGAGGCTCGACGACTTTTTAAAGAGCCAGAGGTCATAACTGATGATGAAGTACTTAATCTTAAGTGGTCTCCTCCAGATGAAGAAGGGTTAATAACATTTCTAGTAAATGAGAATGGGTTCAACAGTGATAGGGTGACAAAGGCAATAGAAAAAATTAAAGCGGCAAAGAACAAGTCATCACAAGGCCGATTGGAATCATTTTTTAAGCCAACTGCAAATCCATCAGTACCTATCAAACGGAAGGAAACTCCAGTGAATGATGCTAAAGCTAAAGGGAGTAACAAGAAAACTAAGGCCGGTGGCGGTAAGAAGAAAAAATAG

Protein sequence

>Msa0620990

MGIKGLTKLLADNAPKSMKENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEIHLQGMFARTIRLLEAGMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKASSNLLCVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFDVAKILEELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLIRQHGSIEKILENISKERYQVPDDWPYQEARRLFKEPEVITDDEVLNLKWSPPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPTANPSVPIKRKETPVNDAKAKGSNKKTKAGGGKKKK*