Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096480 | KEH27849.1 | 73.841 | 302 | 45 | 3 | 1 | 292 | 5 | 282 | 3.33e-123 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096480 | A0A072UDL1 | 73.841 | 302 | 45 | 3 | 1 | 292 | 5 | 282 | 1.59e-123 | 363 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015390 | Msa0096480 | 0.800704 | 1.272306e-48 | -8.615850e-47 |
| Msa0096480 | Msa0117710 | 0.807811 | 4.212916e-50 | -8.615850e-47 |
| Msa0096480 | Msa0143560 | 0.808736 | 2.675194e-50 | -8.615850e-47 |
| Msa0096480 | Msa0186920 | 0.800822 | 1.203210e-48 | -8.615850e-47 |
| Msa0096480 | Msa0211150 | 0.807343 | 5.295231e-50 | -8.615850e-47 |
| Msa0096480 | Msa0425170 | 0.802980 | 4.335742e-49 | -8.615850e-47 |
| Msa0096480 | Msa0548150 | 0.808002 | 3.835872e-50 | -8.615850e-47 |
| Msa0096480 | Msa0622650 | 0.810878 | 9.260491e-51 | -8.615850e-47 |
| Msa0096480 | Msa0846770 | 0.954282 | 4.197164e-112 | -8.615850e-47 |
| Msa0096480 | Msa0964310 | 0.805401 | 1.359118e-49 | -8.615850e-47 |
| Msa0096480 | Msa0980880 | 0.803938 | 2.745130e-49 | -8.615850e-47 |
| Msa0096480 | Msa1028970 | 0.811812 | 5.805553e-51 | -8.615850e-47 |
| Msa0096480 | Msa1032850 | 0.801023 | 1.094653e-48 | -8.615850e-47 |
| Msa0096480 | Msa1121490 | 0.804921 | 1.712438e-49 | -8.615850e-47 |
| Msa0096480 | Msa1353470 | 0.817069 | 3.992407e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096480 | MtrunA17_Chr5g0418651 | 53.846 | 338 | 50 | 6 | 1 | 278 | 8 | 299 | 3.80e-80 | 245 |
| Msa0096480 | MtrunA17_Chr5g0418631 | 81.553 | 103 | 19 | 0 | 190 | 292 | 1 | 103 | 4.05e-51 | 164 |
| Msa0096480 | MtrunA17_Chr5g0418641 | 94.667 | 75 | 4 | 0 | 1 | 75 | 1 | 75 | 1.21e-40 | 135 |
| Msa0096480 | MtrunA17_Chr4g0042991 | 47.586 | 145 | 61 | 5 | 1 | 131 | 8 | 151 | 6.44e-18 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 72 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGCTTCACCAAACTAAAT+TGG | 0.229709 | 1_3:-2187215 | Msa0096480:three_prime_UTR |
| AAAGGGAAGGTTGAAATCTT+TGG | 0.253458 | 1_3:-2187616 | Msa0096480:CDS |
| TTTGTTAGGGTACAACTTAC+TGG | 0.294670 | 1_3:-2189273 | Msa0096480:intron |
| CAAACAATGGGCAGATAAAA+AGG | 0.305616 | 1_3:-2188200 | Msa0096480:CDS |
| AGTATATCCAAGCGATTATC+AGG | 0.348650 | 1_3:-2188432 | Msa0096480:intron |
| TCATCTGCAGTCTCTCTTTG+AGG | 0.372373 | 1_3:+2188250 | None:intergenic |
| ACGGGGAAGGAAGAAATCTT+TGG | 0.373980 | 1_3:-2187514 | Msa0096480:CDS |
| TTCCTTCACTAGCTTGCGTT+TGG | 0.377600 | 1_3:+2187961 | None:intergenic |
| GTACCTTTGTTTGATCTTGT+CGG | 0.377983 | 1_3:+2188165 | None:intergenic |
| AAACATTACCTTTGAAAGAC+TGG | 0.378035 | 1_3:+2189187 | None:intergenic |
| CGATAGAGCTGATAGATTCC+TGG | 0.379330 | 1_3:-2188006 | Msa0096480:CDS |
| TTGTGTAAACCAATTTAGTT+TGG | 0.381988 | 1_3:+2187206 | None:intergenic |
| TCATAAATTCTCCATTCTAC+TGG | 0.383598 | 1_3:+2189938 | None:intergenic |
| TACCTTTGTTTGATCTTGTC+GGG | 0.388889 | 1_3:+2188166 | None:intergenic |
| GCAGTCTCTCTTTGAGGGTC+CGG | 0.403874 | 1_3:+2188256 | None:intergenic |
| AATGAAAAGTTACAAGCAAA+AGG | 0.407225 | 1_3:-2187411 | Msa0096480:CDS |
| TGAGAACCCGGAGGCCTCAT+TGG | 0.408314 | 1_3:-2188508 | Msa0096480:CDS |
| ATTGCAGAGTGAACTTGAAC+GGG | 0.409595 | 1_3:-2187532 | Msa0096480:CDS |
| CATCTGCAGTCTCTCTTTGA+GGG | 0.409701 | 1_3:+2188251 | None:intergenic |
| ATTGCAGAGTGAACTTGAAA+AGG | 0.417996 | 1_3:-2187634 | Msa0096480:intron |
| AAATCTTCAAAGTCCCTTCT+CGG | 0.422429 | 1_3:-2188456 | Msa0096480:CDS |
| AAACAGCTTTCAAGTAAAAC+AGG | 0.432687 | 1_3:-2188624 | Msa0096480:CDS |
| ACCTTGGCCAATGAGGCCTC+CGG | 0.441700 | 1_3:+2188501 | None:intergenic |
| ATCTTTGCTTCTCAAACTCA+TGG | 0.442881 | 1_3:+2187333 | None:intergenic |
| ATCTTTACCTGATAATCGCT+TGG | 0.446357 | 1_3:+2188425 | None:intergenic |
| AAAGAGAGACTGCAGATGAA+TGG | 0.451785 | 1_3:-2188246 | Msa0096480:CDS |
| TTGCAGAGTGAACTTGAAAA+GGG | 0.452559 | 1_3:-2187633 | Msa0096480:intron |
| TCTTCAATTAACTCCGCACT+TGG | 0.453600 | 1_3:+2187372 | None:intergenic |
| AAGAGAGACTGCAGATGAAT+GGG | 0.461285 | 1_3:-2188245 | Msa0096480:CDS |
| CCTTGGCCAATGAGGCCTCC+GGG | 0.464827 | 1_3:+2188502 | None:intergenic |
| CTTCCTCTTCTTGTCTACCC+AGG | 0.480371 | 1_3:+2187988 | None:intergenic |
| GAAGAGAACAAAGCTGATCT+TGG | 0.481626 | 1_3:-2189246 | Msa0096480:CDS |
| TGATAACGACTACATAGAAA+TGG | 0.483998 | 1_3:-2188598 | Msa0096480:CDS |
| ATAAAACCCTCCCAGTAGAA+TGG | 0.485705 | 1_3:-2189949 | None:intergenic |
| CGGAGCGAGAGCCAAGGCTG+AGG | 0.494588 | 1_3:-2187568 | Msa0096480:CDS |
| TGAGCAGAAGAGTGAGAACC+CGG | 0.518079 | 1_3:-2188520 | Msa0096480:CDS |
| ACGCAAGCTAGTGAAGGAAC+AGG | 0.521158 | 1_3:-2187957 | Msa0096480:intron |
| ATGAAAAGTTACAAGCAAAA+GGG | 0.529836 | 1_3:-2187410 | Msa0096480:CDS |
| AACATTACCTTTGAAAGACT+GGG | 0.531731 | 1_3:+2189188 | None:intergenic |
| AGAATTTATGAACTCAAATG+AGG | 0.535213 | 1_3:-2189926 | Msa0096480:intron |
| AGTTGTAGAAGAAAAGAAAC+CGG | 0.547416 | 1_3:-2188275 | Msa0096480:CDS |
| GATAGAGCTGATAGATTCCT+GGG | 0.547828 | 1_3:-2188005 | Msa0096480:CDS |
| ATCTTGGTGCCACAAGGGAT+CGG | 0.552116 | 1_3:-2189230 | Msa0096480:CDS |
| AATTGCAGAGTGAACTTGAA+CGG | 0.553990 | 1_3:-2187533 | Msa0096480:CDS |
| CCCGGAGGCCTCATTGGCCA+AGG | 0.558107 | 1_3:-2188502 | Msa0096480:CDS |
| CAGAAAACCCAGTCTTTCAA+AGG | 0.560261 | 1_3:-2189195 | Msa0096480:intron |
| TAGAACTATGTACAAGCACT+TGG | 0.564578 | 1_3:+2187310 | None:intergenic |
| ATTCCTGGGTAGACAAGAAG+AGG | 0.566055 | 1_3:-2187991 | Msa0096480:CDS |
| GATCGACAAGATCAAACAAT+GGG | 0.566353 | 1_3:-2188212 | Msa0096480:CDS |
| TAGGGTACAACTTACTGGTA+CGG | 0.569596 | 1_3:-2189268 | Msa0096480:CDS |
| ACAAGAAGTAGCTCTTGTCT+TGG | 0.570748 | 1_3:-2187187 | Msa0096480:three_prime_UTR |
| AAGCTGATCTTGGTGCCACA+AGG | 0.575606 | 1_3:-2189236 | Msa0096480:CDS |
| AGAGTGAACTTGAACGGGGA+AGG | 0.580311 | 1_3:-2187527 | Msa0096480:CDS |
| AGCCAAACGCAAGCTAGTGA+AGG | 0.599861 | 1_3:-2187963 | Msa0096480:CDS |
| GCTTGGATATACTACCGAGA+AGG | 0.608566 | 1_3:+2188442 | None:intergenic |
| TATGTAAATCTAATTGCAGA+CGG | 0.610209 | 1_3:-2187588 | Msa0096480:CDS |
| AGAGTGAACTTGAAAAGGGA+AGG | 0.614135 | 1_3:-2187629 | Msa0096480:CDS |
| AGCTGATCTTGGTGCCACAA+GGG | 0.616690 | 1_3:-2189235 | Msa0096480:CDS |
| CTTGGATATACTACCGAGAA+GGG | 0.626044 | 1_3:+2188443 | None:intergenic |
| CAGAGCGAGAGACAAGGCTG+TGG | 0.629941 | 1_3:-2187448 | Msa0096480:CDS |
| GTTCTCACTCTTCTGCTCAG+AGG | 0.636166 | 1_3:+2188524 | None:intergenic |
| ATTGGCCAAGGTCAAAAGCA+AGG | 0.638241 | 1_3:-2188490 | Msa0096480:CDS |
| GGCAAGTACAATTCCAAGTG+CGG | 0.640534 | 1_3:-2187385 | Msa0096480:CDS |
| AAAGTTACAAGCAAAAGGGA+AGG | 0.645842 | 1_3:-2187406 | Msa0096480:CDS |
| TGCAAACAGAGCGAGAGACA+AGG | 0.647074 | 1_3:-2187454 | Msa0096480:CDS |
| TGATCGACAAGATCAAACAA+TGG | 0.655153 | 1_3:-2188213 | Msa0096480:CDS |
| TGCAGACGGAGCGAGAGCCA+AGG | 0.657239 | 1_3:-2187574 | Msa0096480:CDS |
| GACTACATAGAAATGGTGCA+TGG | 0.661525 | 1_3:-2188591 | Msa0096480:CDS |
| AGCCCGACAAGATCAAACAA+AGG | 0.719711 | 1_3:-2188168 | Msa0096480:intron |
| GCAGAAGAGTGAGAACCCGG+AGG | 0.721846 | 1_3:-2188517 | Msa0096480:CDS |
| GGCCAAGGTCAAAAGCAAGG+TGG | 0.724398 | 1_3:-2188487 | Msa0096480:CDS |
| TTGCAGAGTGAACTTGAACG+GGG | 0.735768 | 1_3:-2187531 | Msa0096480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATAATAT+TGG | + | chr1_3:2188021-2188040 | None:intergenic | 0.0% |
| !!! | ATATATATATAATATTGGTT+CGG | + | chr1_3:2188004-2188023 | None:intergenic | 10.0% |
| !!! | TTTATATGAACAATTTTGTT+AGG | - | chr1_3:2187835-2187854 | Msa0096480:intron | 15.0% |
| !!! | TTATATGAACAATTTTGTTA+GGG | - | chr1_3:2187836-2187855 | Msa0096480:intron | 15.0% |
| !! | TACAATATTTACCATGTTAA+TGG | - | chr1_3:2187369-2187388 | Msa0096480:CDS | 20.0% |
| !!! | TTTTATGTAACATAATCCTA+TGG | + | chr1_3:2187671-2187690 | None:intergenic | 20.0% |
| !! | ACATGTAAAAAAATTCACAA+AGG | + | chr1_3:2187719-2187738 | None:intergenic | 20.0% |
| !!! | ATGAAATAGACTCAATTTTA+TGG | + | chr1_3:2188225-2188244 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTCCTCATTTTTA+TGG | + | chr1_3:2188274-2188293 | None:intergenic | 20.0% |
| !!! | GTTTTTTTACTCATAAGTAA+TGG | + | chr1_3:2188757-2188776 | None:intergenic | 20.0% |
| !!! | CTTGTAACTTTTCATTTTTT+GGG | + | chr1_3:2189707-2189726 | None:intergenic | 20.0% |
| ! | AGAATTTATGAACTCAAATG+AGG | - | chr1_3:2187196-2187215 | Msa0096480:three_prime_UTR | 25.0% |
| ! | TACAATATTTACCATGTTGA+TGG | - | chr1_3:2187310-2187329 | Msa0096480:three_prime_UTR | 25.0% |
| ! | AATATTTACCATGTTAATGG+TGG | - | chr1_3:2187372-2187391 | Msa0096480:CDS | 25.0% |
| ! | TGTTTATGATGTTTGAATGA+TGG | + | chr1_3:2187552-2187571 | None:intergenic | 25.0% |
| !!! | TCAACACCCTTTTATTTTAA+GGG | - | chr1_3:2187594-2187613 | Msa0096480:CDS | 25.0% |
| ! | TCAAGACCCTTAAAATAAAA+GGG | + | chr1_3:2187603-2187622 | None:intergenic | 25.0% |
| ! | ATCAAGACCCTTAAAATAAA+AGG | + | chr1_3:2187604-2187623 | None:intergenic | 25.0% |
| !! | TAACATAATCCTATGGATTA+GGG | + | chr1_3:2187664-2187683 | None:intergenic | 25.0% |
| ! | GTAAAAAAATTCACAAAGGA+AGG | + | chr1_3:2187715-2187734 | None:intergenic | 25.0% |
| !! | AAGATGCTCTTAATTTTCAT+CGG | - | chr1_3:2187803-2187822 | Msa0096480:intron | 25.0% |
| ! | AAGCATTTACCATAAAAATG+AGG | - | chr1_3:2188262-2188281 | Msa0096480:CDS | 25.0% |
| ! | AAAAAATATTATGCCATGCA+TGG | - | chr1_3:2188308-2188327 | Msa0096480:intron | 25.0% |
| !! | CATGGTTATTGAAAAGTTTT+AGG | - | chr1_3:2188326-2188345 | Msa0096480:intron | 25.0% |
| ! | AATTATGCTTCATAAATGGA+GGG | + | chr1_3:2188733-2188752 | None:intergenic | 25.0% |
| ! | TAATTATGCTTCATAAATGG+AGG | + | chr1_3:2188734-2188753 | None:intergenic | 25.0% |
| ! | TGGTAATTATGCTTCATAAA+TGG | + | chr1_3:2188737-2188756 | None:intergenic | 25.0% |
| ! | TACTAATGAAAAACATTGTC+AGG | - | chr1_3:2189083-2189102 | Msa0096480:intron | 25.0% |
| !!! | ACATTATCTGATTTTAGCTA+AGG | + | chr1_3:2189268-2189287 | None:intergenic | 25.0% |
| ! | CTAAAATCAGATAATGTTCT+AGG | - | chr1_3:2189271-2189290 | Msa0096480:intron | 25.0% |
| ! | GGAATGATAAAAAAATAGAG+AGG | - | chr1_3:2189397-2189416 | Msa0096480:intron | 25.0% |
| ! | TATGTAAATCTAATTGCAGA+CGG | - | chr1_3:2189534-2189553 | Msa0096480:intron | 25.0% |
| !!! | GCTTGTAACTTTTCATTTTT+TGG | + | chr1_3:2189708-2189727 | None:intergenic | 25.0% |
| ! | AATGAAAAGTTACAAGCAAA+AGG | - | chr1_3:2189711-2189730 | Msa0096480:intron | 25.0% |
| ! | ATGAAAAGTTACAAGCAAAA+GGG | - | chr1_3:2189712-2189731 | Msa0096480:intron | 25.0% |
| ! | TTGTGTAAACCAATTTAGTT+TGG | + | chr1_3:2189919-2189938 | None:intergenic | 25.0% |
| TTTCTTCTCACACATCTTAT+TGG | - | chr1_3:2187234-2187253 | Msa0096480:three_prime_UTR | 30.0% | |
| ! | AATATTTACCATGTTGATGG+TGG | - | chr1_3:2187313-2187332 | Msa0096480:three_prime_UTR | 30.0% |
| ! | AGAAGACATGAGATTTTCAA+TGG | + | chr1_3:2187495-2187514 | None:intergenic | 30.0% |
| !! | CTTAAAATAAAAGGGTGTTG+AGG | + | chr1_3:2187595-2187614 | None:intergenic | 30.0% |
| !!! | CTCAACACCCTTTTATTTTA+AGG | - | chr1_3:2187593-2187612 | Msa0096480:CDS | 30.0% |
| ! | TTTAAGGGTCTTGATTTTAC+AGG | - | chr1_3:2187609-2187628 | Msa0096480:CDS | 30.0% |
| !! | AACATAATCCTATGGATTAG+GGG | + | chr1_3:2187663-2187682 | None:intergenic | 30.0% |
| GTAACATAATCCTATGGATT+AGG | + | chr1_3:2187665-2187684 | None:intergenic | 30.0% | |
| ! | AACATTACCTTTGAAAGACT+GGG | + | chr1_3:2187937-2187956 | None:intergenic | 30.0% |
| ! | AAACATTACCTTTGAAAGAC+TGG | + | chr1_3:2187938-2187957 | None:intergenic | 30.0% |
| AGTTGAAATGAGTACCTATT+GGG | - | chr1_3:2188112-2188131 | Msa0096480:intron | 30.0% | |
| ! | TCTTTTACTTCTCTCTTGTA+GGG | - | chr1_3:2188160-2188179 | Msa0096480:intron | 30.0% |
| ! | AACTTTTCAATAACCATGCA+TGG | + | chr1_3:2188324-2188343 | None:intergenic | 30.0% |
| ! | ATTTTCAGCAGAGAAGAAAA+AGG | - | chr1_3:2188458-2188477 | Msa0096480:CDS | 30.0% |
| ! | TTTTCAGCAGAGAAGAAAAA+GGG | - | chr1_3:2188459-2188478 | Msa0096480:CDS | 30.0% |
| ! | AAACAGCTTTCAAGTAAAAC+AGG | - | chr1_3:2188498-2188517 | Msa0096480:CDS | 30.0% |
| ! | TGATAACGACTACATAGAAA+TGG | - | chr1_3:2188524-2188543 | Msa0096480:CDS | 30.0% |
| ATTATGCTTCATAAATGGAG+GGG | + | chr1_3:2188732-2188751 | None:intergenic | 30.0% | |
| AGTTGTAGAAGAAAAGAAAC+CGG | - | chr1_3:2188847-2188866 | Msa0096480:intron | 30.0% | |
| CATTTAATCCTTCTTTAAGC+AGG | - | chr1_3:2189229-2189248 | Msa0096480:CDS | 30.0% | |
| TCTAGTATGAACAATAAGTC+TGG | - | chr1_3:2189376-2189395 | Msa0096480:intron | 30.0% | |
| TGATAAAAAAATAGAGAGGC+CGG | - | chr1_3:2189401-2189420 | Msa0096480:intron | 30.0% | |
| !!! | GTTCACTCTGCAATTTTTTT+CGG | + | chr1_3:2189584-2189603 | None:intergenic | 30.0% |
| !!! | GTAACTTTTCATTTTTTGGG+TGG | + | chr1_3:2189704-2189723 | None:intergenic | 30.0% |
| TAAGCTTCACCAAACTAAAT+TGG | - | chr1_3:2189907-2189926 | Msa0096480:intron | 30.0% | |
| TTCTCACACATCTTATTGGA+TGG | - | chr1_3:2187238-2187257 | Msa0096480:three_prime_UTR | 35.0% | |
| TCTTGTTACCACCATTAACA+TGG | + | chr1_3:2187383-2187402 | None:intergenic | 35.0% | |
| GTGAGATTCTGATCAAACAT+GGG | + | chr1_3:2187473-2187492 | None:intergenic | 35.0% | |
| ! | CTTGATTTTACAGGACCATA+TGG | - | chr1_3:2187618-2187637 | Msa0096480:CDS | 35.0% |
| !! | ACATAATCCTATGGATTAGG+GGG | + | chr1_3:2187662-2187681 | None:intergenic | 35.0% |
| TTTGTTAGGGTACAACTTAC+TGG | - | chr1_3:2187849-2187868 | Msa0096480:intron | 35.0% | |
| GAGTTGAAATGAGTACCTAT+TGG | - | chr1_3:2188111-2188130 | Msa0096480:intron | 35.0% | |
| ! | CTCTTTTACTTCTCTCTTGT+AGG | - | chr1_3:2188159-2188178 | Msa0096480:intron | 35.0% |
| !!! | GTTTTAGGAATGAAGTCTAG+AGG | - | chr1_3:2188341-2188360 | Msa0096480:intron | 35.0% |
| AAGTCTAGAGGATTACACAT+TGG | - | chr1_3:2188353-2188372 | Msa0096480:intron | 35.0% | |
| ! | CACGTTTTTCTGAACTAACT+AGG | + | chr1_3:2188396-2188415 | None:intergenic | 35.0% |
| !!! | GTCAAGACATTTTTTACACG+AGG | + | chr1_3:2188437-2188456 | None:intergenic | 35.0% |
| AAATCTTCAAAGTCCCTTCT+CGG | - | chr1_3:2188666-2188685 | Msa0096480:intron | 35.0% | |
| AGTATATCCAAGCGATTATC+AGG | - | chr1_3:2188690-2188709 | Msa0096480:intron | 35.0% | |
| ATCTTTACCTGATAATCGCT+TGG | + | chr1_3:2188700-2188719 | None:intergenic | 35.0% | |
| ACTTTGTCTGCATCATGTTT+AGG | - | chr1_3:2188800-2188819 | Msa0096480:intron | 35.0% | |
| TGATCGACAAGATCAAACAA+TGG | - | chr1_3:2188909-2188928 | Msa0096480:intron | 35.0% | |
| GATCGACAAGATCAAACAAT+GGG | - | chr1_3:2188910-2188929 | Msa0096480:intron | 35.0% | |
| CAAACAATGGGCAGATAAAA+AGG | - | chr1_3:2188922-2188941 | Msa0096480:intron | 35.0% | |
| ! | TACCTTTGTTTGATCTTGTC+GGG | + | chr1_3:2188959-2188978 | None:intergenic | 35.0% |
| ! | GTACCTTTGTTTGATCTTGT+CGG | + | chr1_3:2188960-2188979 | None:intergenic | 35.0% |
| !! | CAAGATCAAACAAAGGTACT+TGG | - | chr1_3:2188961-2188980 | Msa0096480:intron | 35.0% |
| ! | TCTCTCAGACACTCTTTTTA+AGG | - | chr1_3:2189190-2189209 | Msa0096480:intron | 35.0% |
| TTTCATGACCTGCTTAAAGA+AGG | + | chr1_3:2189240-2189259 | None:intergenic | 35.0% | |
| GATAAAAAAATAGAGAGGCC+GGG | - | chr1_3:2189402-2189421 | Msa0096480:intron | 35.0% | |
| ATTGCAGAGTGAACTTGAAA+AGG | - | chr1_3:2189488-2189507 | Msa0096480:intron | 35.0% | |
| TTGCAGAGTGAACTTGAAAA+GGG | - | chr1_3:2189489-2189508 | Msa0096480:intron | 35.0% | |
| AAAGGGAAGGTTGAAATCTT+TGG | - | chr1_3:2189506-2189525 | Msa0096480:intron | 35.0% | |
| AATTGCAGAGTGAACTTGAA+CGG | - | chr1_3:2189487-2189506 | Msa0096480:intron | 35.0% | |
| AAAGTTACAAGCAAAAGGGA+AGG | - | chr1_3:2189716-2189735 | Msa0096480:intron | 35.0% | |
| ATCTTTGCTTCTCAAACTCA+TGG | + | chr1_3:2189792-2189811 | None:intergenic | 35.0% | |
| TAGAACTATGTACAAGCACT+TGG | + | chr1_3:2189815-2189834 | None:intergenic | 35.0% | |
| TCTTGTTACCACCATCAACA+TGG | + | chr1_3:2187324-2187343 | None:intergenic | 40.0% | |
| GGTGAGATTCTGATCAAACA+TGG | + | chr1_3:2187474-2187493 | None:intergenic | 40.0% | |
| TGAACTGATCACCAATACGA+AGG | - | chr1_3:2187519-2187538 | Msa0096480:CDS | 40.0% | |
| ATGGAGATTCTCCTTCGTAT+TGG | + | chr1_3:2187533-2187552 | None:intergenic | 40.0% | |
| TAGGGTACAACTTACTGGTA+CGG | - | chr1_3:2187854-2187873 | Msa0096480:intron | 40.0% | |
| GAAGAGAACAAAGCTGATCT+TGG | - | chr1_3:2187876-2187895 | Msa0096480:intron | 40.0% | |
| ! | AAAGACTGGGTTTTCTGCAT+AGG | + | chr1_3:2187924-2187943 | None:intergenic | 40.0% |
| CAGAAAACCCAGTCTTTCAA+AGG | - | chr1_3:2187927-2187946 | Msa0096480:intron | 40.0% | |
| AATGAGAGAAGTGAAGGTAG+GGG | + | chr1_3:2187973-2187992 | None:intergenic | 40.0% | |
| CAATGAGAGAAGTGAAGGTA+GGG | + | chr1_3:2187974-2187993 | None:intergenic | 40.0% | |
| CAGTGGGGTACATAATAAGT+TGG | + | chr1_3:2188089-2188108 | None:intergenic | 40.0% | |
| CAACTTATTATGTACCCCAC+TGG | - | chr1_3:2188087-2188106 | Msa0096480:intron | 40.0% | |
| ACTCATTTCAACTCTCCAGT+GGG | + | chr1_3:2188105-2188124 | None:intergenic | 40.0% | |
| TACTCATTTCAACTCTCCAG+TGG | + | chr1_3:2188106-2188125 | None:intergenic | 40.0% | |
| TGCAAGACTTCATTCCCAAT+AGG | + | chr1_3:2188129-2188148 | None:intergenic | 40.0% | |
| !!! | GCTGTTTTTGTAACCAACTC+TGG | + | chr1_3:2188485-2188504 | None:intergenic | 40.0% |
| GACTACATAGAAATGGTGCA+TGG | - | chr1_3:2188531-2188550 | Msa0096480:CDS | 40.0% | |
| CTTGGATATACTACCGAGAA+GGG | + | chr1_3:2188682-2188701 | None:intergenic | 40.0% | |
| AAAGAGAGACTGCAGATGAA+TGG | - | chr1_3:2188876-2188895 | Msa0096480:intron | 40.0% | |
| AAGAGAGACTGCAGATGAAT+GGG | - | chr1_3:2188877-2188896 | Msa0096480:intron | 40.0% | |
| !! | AAACAAAGGTACTTGGAAGC+AGG | - | chr1_3:2188968-2188987 | Msa0096480:intron | 40.0% |
| GATAGAGCTGATAGATTCCT+GGG | - | chr1_3:2189117-2189136 | Msa0096480:intron | 40.0% | |
| ! | CTCACACCACATATTTTACC+CGG | + | chr1_3:2189423-2189442 | None:intergenic | 40.0% |
| AGAGTGAACTTGAAAAGGGA+AGG | - | chr1_3:2189493-2189512 | Msa0096480:intron | 40.0% | |
| ATTGCAGAGTGAACTTGAAC+GGG | - | chr1_3:2189590-2189609 | Msa0096480:intron | 40.0% | |
| TCTTCAATTAACTCCGCACT+TGG | + | chr1_3:2189753-2189772 | None:intergenic | 40.0% | |
| !! | ATCCTATGGATTAGGGGGAA+GGG | + | chr1_3:2187657-2187676 | None:intergenic | 45.0% |
| !! | AATCCTATGGATTAGGGGGA+AGG | + | chr1_3:2187658-2187677 | None:intergenic | 45.0% |
| ! | AGGTATTTTCCGATCCCTTG+TGG | + | chr1_3:2187904-2187923 | None:intergenic | 45.0% |
| GAAGTGAAGGTAGGGGAAAA+AGG | + | chr1_3:2187966-2187985 | None:intergenic | 45.0% | |
| CCAATGAGAGAAGTGAAGGT+AGG | + | chr1_3:2187975-2187994 | None:intergenic | 45.0% | |
| CCTACCTTCACTTCTCTCAT+TGG | - | chr1_3:2187972-2187991 | Msa0096480:CDS | 45.0% | |
| ACCTTCACTTCTCTCATTGG+TGG | - | chr1_3:2187975-2187994 | Msa0096480:CDS | 45.0% | |
| CTCATTTCAACTCTCCAGTG+GGG | + | chr1_3:2188104-2188123 | None:intergenic | 45.0% | |
| AGAAGAAAAAGGGCCAGAGT+TGG | - | chr1_3:2188469-2188488 | Msa0096480:CDS | 45.0% | |
| ATTGGCCAAGGTCAAAAGCA+AGG | - | chr1_3:2188632-2188651 | Msa0096480:CDS | 45.0% | |
| GCTTGGATATACTACCGAGA+AGG | + | chr1_3:2188683-2188702 | None:intergenic | 45.0% | |
| CATCTGCAGTCTCTCTTTGA+GGG | + | chr1_3:2188874-2188893 | None:intergenic | 45.0% | |
| TCATCTGCAGTCTCTCTTTG+AGG | + | chr1_3:2188875-2188894 | None:intergenic | 45.0% | |
| AGCCCGACAAGATCAAACAA+AGG | - | chr1_3:2188954-2188973 | Msa0096480:intron | 45.0% | |
| CGATAGAGCTGATAGATTCC+TGG | - | chr1_3:2189116-2189135 | Msa0096480:intron | 45.0% | |
| ATTCCTGGGTAGACAAGAAG+AGG | - | chr1_3:2189131-2189150 | Msa0096480:intron | 45.0% | |
| ! | TTCCTTCACTAGCTTGCGTT+TGG | + | chr1_3:2189164-2189183 | None:intergenic | 45.0% |
| TTGCAGAGTGAACTTGAACG+GGG | - | chr1_3:2189591-2189610 | Msa0096480:intron | 45.0% | |
| ACGGGGAAGGAAGAAATCTT+TGG | - | chr1_3:2189608-2189627 | Msa0096480:intron | 45.0% | |
| GGCAAGTACAATTCCAAGTG+CGG | - | chr1_3:2189737-2189756 | Msa0096480:intron | 45.0% | |
| AGGACCATATGGTCCCTGAA+GGG | - | chr1_3:2187629-2187648 | Msa0096480:CDS | 50.0% | |
| AACCCTTCCCCCTAATCCAT+AGG | - | chr1_3:2187652-2187671 | Msa0096480:intron | 50.0% | |
| !! | AAGCTGATCTTGGTGCCACA+AGG | - | chr1_3:2187886-2187905 | Msa0096480:intron | 50.0% |
| !! | AGCTGATCTTGGTGCCACAA+GGG | - | chr1_3:2187887-2187906 | Msa0096480:intron | 50.0% |
| !! | ATCTTGGTGCCACAAGGGAT+CGG | - | chr1_3:2187892-2187911 | Msa0096480:intron | 50.0% |
| GCCACCAATGAGAGAAGTGA+AGG | + | chr1_3:2187979-2187998 | None:intergenic | 50.0% | |
| GTTCTCACTCTTCTGCTCAG+AGG | + | chr1_3:2188601-2188620 | None:intergenic | 50.0% | |
| TGAGCAGAAGAGTGAGAACC+CGG | - | chr1_3:2188602-2188621 | Msa0096480:CDS | 50.0% | |
| ! | GCTTTTGACCTTGGCCAATG+AGG | + | chr1_3:2188631-2188650 | None:intergenic | 50.0% |
| !! | GTCCACCTTGCTTTTGACCT+TGG | + | chr1_3:2188640-2188659 | None:intergenic | 50.0% |
| CTTCCTCTTCTTGTCTACCC+AGG | + | chr1_3:2189137-2189156 | None:intergenic | 50.0% | |
| AGCCAAACGCAAGCTAGTGA+AGG | - | chr1_3:2189159-2189178 | Msa0096480:intron | 50.0% | |
| ACGCAAGCTAGTGAAGGAAC+AGG | - | chr1_3:2189165-2189184 | Msa0096480:intron | 50.0% | |
| GAGAGGCCGGGTAAAATATG+TGG | - | chr1_3:2189414-2189433 | Msa0096480:intron | 50.0% | |
| ! | TTTTCGGCTTTCCTCAGCCT+TGG | + | chr1_3:2189568-2189587 | None:intergenic | 50.0% |
| AGAGTGAACTTGAACGGGGA+AGG | - | chr1_3:2189595-2189614 | Msa0096480:intron | 50.0% | |
| TGCAAACAGAGCGAGAGACA+AGG | - | chr1_3:2189668-2189687 | Msa0096480:intron | 50.0% | |
| CAGGACCATATGGTCCCTGA+AGG | - | chr1_3:2187628-2187647 | Msa0096480:CDS | 55.0% | |
| GGTTCCCTTCAGGGACCATA+TGG | + | chr1_3:2187636-2187655 | None:intergenic | 55.0% | |
| GGCCAAGGTCAAAAGCAAGG+TGG | - | chr1_3:2188635-2188654 | Msa0096480:CDS | 55.0% | |
| ! | GCAGTCTCTCTTTGAGGGTC+CGG | + | chr1_3:2188869-2188888 | None:intergenic | 55.0% |
| AGGGGGAAGGGTTCCCTTCA+GGG | + | chr1_3:2187645-2187664 | None:intergenic | 60.0% | |
| TAGGGGGAAGGGTTCCCTTC+AGG | + | chr1_3:2187646-2187665 | None:intergenic | 60.0% | |
| GCAGAAGAGTGAGAACCCGG+AGG | - | chr1_3:2188605-2188624 | Msa0096480:CDS | 60.0% | |
| TGAGAACCCGGAGGCCTCAT+TGG | - | chr1_3:2188614-2188633 | Msa0096480:CDS | 60.0% | |
| ACCTTGGCCAATGAGGCCTC+CGG | + | chr1_3:2188624-2188643 | None:intergenic | 60.0% | |
| CAGAGCGAGAGACAAGGCTG+TGG | - | chr1_3:2189674-2189693 | Msa0096480:intron | 60.0% | |
| CCTTGGCCAATGAGGCCTCC+GGG | + | chr1_3:2188623-2188642 | None:intergenic | 65.0% | |
| TGCAGACGGAGCGAGAGCCA+AGG | - | chr1_3:2189548-2189567 | Msa0096480:intron | 65.0% | |
| CCCGGAGGCCTCATTGGCCA+AGG | - | chr1_3:2188620-2188639 | Msa0096480:CDS | 70.0% | |
| CGGAGCGAGAGCCAAGGCTG+AGG | - | chr1_3:2189554-2189573 | Msa0096480:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 2187187 | 2189957 | 2187187 | ID=Msa0096480;Name=Msa0096480 |
| chr1_3 | mRNA | 2187187 | 2189957 | 2187187 | ID=Msa0096480-mRNA-1;Parent=Msa0096480;Name=Msa0096480-mRNA-1;_AED=0.33;_eAED=0.33;_QI=26|0.8|0.83|1|0.8|0.66|6|163|292 |
| chr1_3 | exon | 2187187 | 2187649 | 2187187 | ID=Msa0096480-mRNA-1:exon:570;Parent=Msa0096480-mRNA-1 |
| chr1_3 | exon | 2187958 | 2188039 | 2187958 | ID=Msa0096480-mRNA-1:exon:569;Parent=Msa0096480-mRNA-1 |
| chr1_3 | exon | 2188169 | 2188322 | 2188169 | ID=Msa0096480-mRNA-1:exon:568;Parent=Msa0096480-mRNA-1 |
| chr1_3 | exon | 2188433 | 2188678 | 2188433 | ID=Msa0096480-mRNA-1:exon:567;Parent=Msa0096480-mRNA-1 |
| chr1_3 | exon | 2189196 | 2189287 | 2189196 | ID=Msa0096480-mRNA-1:exon:566;Parent=Msa0096480-mRNA-1 |
| chr1_3 | exon | 2189927 | 2189957 | 2189927 | ID=Msa0096480-mRNA-1:exon:565;Parent=Msa0096480-mRNA-1 |
| chr1_3 | five_prime_UTR | 2189932 | 2189957 | 2189932 | ID=Msa0096480-mRNA-1:five_prime_utr;Parent=Msa0096480-mRNA-1 |
| chr1_3 | CDS | 2189927 | 2189931 | 2189927 | ID=Msa0096480-mRNA-1:cds;Parent=Msa0096480-mRNA-1 |
| chr1_3 | CDS | 2189196 | 2189287 | 2189196 | ID=Msa0096480-mRNA-1:cds;Parent=Msa0096480-mRNA-1 |
| chr1_3 | CDS | 2188433 | 2188678 | 2188433 | ID=Msa0096480-mRNA-1:cds;Parent=Msa0096480-mRNA-1 |
| chr1_3 | CDS | 2188169 | 2188322 | 2188169 | ID=Msa0096480-mRNA-1:cds;Parent=Msa0096480-mRNA-1 |
| chr1_3 | CDS | 2187958 | 2188039 | 2187958 | ID=Msa0096480-mRNA-1:cds;Parent=Msa0096480-mRNA-1 |
| chr1_3 | CDS | 2187350 | 2187649 | 2187350 | ID=Msa0096480-mRNA-1:cds;Parent=Msa0096480-mRNA-1 |
| chr1_3 | three_prime_UTR | 2187187 | 2187349 | 2187187 | ID=Msa0096480-mRNA-1:three_prime_utr;Parent=Msa0096480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
