Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1181190 | XP_013444168.1 | 94.463 | 307 | 15 | 1 | 1 | 305 | 1 | 307 | 0.0 | 590 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1181190 | sp|Q6GL77|UBXN1_XENTR | 28.390 | 236 | 143 | 4 | 11 | 223 | 7 | 239 | 1.06e-13 | 73.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1181190 | 0.825169 | 5.426576e-54 | -8.615850e-47 |
| Msa0022550 | Msa1181190 | 0.815520 | 8.865596e-52 | -8.615850e-47 |
| Msa0024550 | Msa1181190 | 0.800748 | 1.246220e-48 | -8.615850e-47 |
| Msa0049790 | Msa1181190 | 0.805896 | 1.069706e-49 | -8.615850e-47 |
| Msa0068680 | Msa1181190 | 0.803639 | 3.166496e-49 | -8.615850e-47 |
| Msa0069330 | Msa1181190 | 0.800041 | 1.735878e-48 | -8.615850e-47 |
| Msa0074240 | Msa1181190 | 0.811262 | 7.645754e-51 | -8.615850e-47 |
| Msa0078650 | Msa1181190 | 0.801356 | 9.359095e-49 | -8.615850e-47 |
| Msa0081520 | Msa1181190 | 0.846537 | 2.041208e-59 | -8.615850e-47 |
| Msa0089630 | Msa1181190 | 0.809635 | 1.716119e-50 | -8.615850e-47 |
| Msa0110970 | Msa1181190 | 0.812239 | 4.685007e-51 | -8.615850e-47 |
| Msa0118570 | Msa1181190 | 0.801019 | 1.096723e-48 | -8.615850e-47 |
| Msa0616510 | Msa1181190 | 0.804148 | 2.482126e-49 | -8.615850e-47 |
| Msa0623330 | Msa1181190 | 0.802436 | 5.616211e-49 | -8.615850e-47 |
| Msa0626510 | Msa1181190 | 0.814640 | 1.389794e-51 | -8.615850e-47 |
| Msa0641210 | Msa1181190 | 0.802236 | 6.174950e-49 | -8.615850e-47 |
| Msa0662340 | Msa1181190 | 0.802655 | 5.059742e-49 | -8.615850e-47 |
| Msa0663390 | Msa1181190 | 0.808036 | 3.773111e-50 | -8.615850e-47 |
| Msa0664910 | Msa1181190 | 0.811638 | 6.333244e-51 | -8.615850e-47 |
| Msa0677410 | Msa1181190 | 0.808749 | 2.657329e-50 | -8.615850e-47 |
| Msa0693010 | Msa1181190 | -0.810171 | 1.316428e-50 | -8.615850e-47 |
| Msa0710800 | Msa1181190 | 0.800675 | 1.289426e-48 | -8.615850e-47 |
| Msa0726690 | Msa1181190 | 0.819699 | 1.012503e-52 | -8.615850e-47 |
| Msa0727640 | Msa1181190 | 0.807598 | 4.674934e-50 | -8.615850e-47 |
| Msa0727710 | Msa1181190 | 0.826170 | 3.141739e-54 | -8.615850e-47 |
| Msa0742740 | Msa1181190 | 0.819252 | 1.280548e-52 | -8.615850e-47 |
| Msa0770720 | Msa1181190 | 0.806021 | 1.006801e-49 | -8.615850e-47 |
| Msa0796160 | Msa1181190 | 0.833900 | 4.087606e-56 | -8.615850e-47 |
| Msa0823820 | Msa1181190 | 0.834198 | 3.442949e-56 | -8.615850e-47 |
| Msa0824660 | Msa1181190 | 0.805582 | 1.245199e-49 | -8.615850e-47 |
| Msa0828560 | Msa1181190 | 0.811167 | 8.016874e-51 | -8.615850e-47 |
| Msa0829300 | Msa1181190 | 0.800411 | 1.459475e-48 | -8.615850e-47 |
| Msa0833760 | Msa1181190 | 0.825270 | 5.135512e-54 | -8.615850e-47 |
| Msa0142200 | Msa1181190 | 0.811482 | 6.847861e-51 | -8.615850e-47 |
| Msa0157290 | Msa1181190 | 0.825806 | 3.834154e-54 | -8.615850e-47 |
| Msa0170570 | Msa1181190 | 0.804848 | 1.773471e-49 | -8.615850e-47 |
| Msa0171290 | Msa1181190 | 0.803806 | 2.924256e-49 | -8.615850e-47 |
| Msa0173890 | Msa1181190 | 0.844626 | 6.729304e-59 | -8.615850e-47 |
| Msa0186920 | Msa1181190 | 0.806139 | 9.507749e-50 | -8.615850e-47 |
| Msa0195630 | Msa1181190 | 0.807605 | 4.659024e-50 | -8.615850e-47 |
| Msa0211150 | Msa1181190 | 0.821982 | 3.021729e-53 | -8.615850e-47 |
| Msa0212990 | Msa1181190 | 0.806736 | 7.117339e-50 | -8.615850e-47 |
| Msa0218810 | Msa1181190 | 0.803260 | 3.794117e-49 | -8.615850e-47 |
| Msa0221000 | Msa1181190 | 0.810319 | 1.222725e-50 | -8.615850e-47 |
| Msa0223080 | Msa1181190 | 0.828759 | 7.520967e-55 | -8.615850e-47 |
| Msa0227470 | Msa1181190 | 0.813063 | 3.093955e-51 | -8.615850e-47 |
| Msa0367870 | Msa1181190 | 0.812240 | 4.682612e-51 | -8.615850e-47 |
| Msa0371170 | Msa1181190 | 0.808662 | 2.774271e-50 | -8.615850e-47 |
| Msa0376350 | Msa1181190 | 0.801646 | 8.160415e-49 | -8.615850e-47 |
| Msa0376630 | Msa1181190 | 0.822318 | 2.526174e-53 | -8.615850e-47 |
| Msa0378720 | Msa1181190 | 0.819011 | 1.453195e-52 | -8.615850e-47 |
| Msa0388770 | Msa1181190 | 0.854578 | 1.121107e-61 | -8.615850e-47 |
| Msa0392510 | Msa1181190 | 0.812864 | 3.420798e-51 | -8.615850e-47 |
| Msa0393440 | Msa1181190 | 0.855366 | 6.621912e-62 | -8.615850e-47 |
| Msa0410650 | Msa1181190 | 0.815305 | 9.895280e-52 | -8.615850e-47 |
| Msa0425170 | Msa1181190 | 0.813455 | 2.537779e-51 | -8.615850e-47 |
| Msa0432380 | Msa1181190 | 0.821064 | 4.924531e-53 | -8.615850e-47 |
| Msa0437560 | Msa1181190 | 0.801988 | 6.941934e-49 | -8.615850e-47 |
| Msa0452920 | Msa1181190 | 0.815949 | 7.111518e-52 | -8.615850e-47 |
| Msa0460590 | Msa1181190 | 0.811372 | 7.236335e-51 | -8.615850e-47 |
| Msa0461720 | Msa1181190 | 0.809739 | 1.630110e-50 | -8.615850e-47 |
| Msa0462070 | Msa1181190 | 0.827089 | 1.897037e-54 | -8.615850e-47 |
| Msa0464680 | Msa1181190 | 0.829191 | 5.909330e-55 | -8.615850e-47 |
| Msa0471670 | Msa1181190 | 0.813302 | 2.741254e-51 | -8.615850e-47 |
| Msa0475790 | Msa1181190 | 0.812322 | 4.494287e-51 | -8.615850e-47 |
| Msa0479170 | Msa1181190 | 0.836165 | 1.097902e-56 | -8.615850e-47 |
| Msa0481530 | Msa1181190 | 0.803377 | 3.588415e-49 | -8.615850e-47 |
| Msa0996680 | Msa1181190 | 0.836867 | 7.274344e-57 | -8.615850e-47 |
| Msa1013400 | Msa1181190 | 0.820134 | 8.053260e-53 | -8.615850e-47 |
| Msa1019430 | Msa1181190 | 0.828016 | 1.136220e-54 | -8.615850e-47 |
| Msa1019470 | Msa1181190 | 0.808129 | 3.604304e-50 | -8.615850e-47 |
| Msa1020510 | Msa1181190 | 0.811957 | 5.399641e-51 | -8.615850e-47 |
| Msa1020630 | Msa1181190 | 0.864317 | 1.326204e-64 | -8.615850e-47 |
| Msa1031930 | Msa1181190 | 0.854520 | 1.165565e-61 | -8.615850e-47 |
| Msa1043370 | Msa1181190 | 0.801689 | 7.996548e-49 | -8.615850e-47 |
| Msa1050910 | Msa1181190 | 0.804562 | 2.035104e-49 | -8.615850e-47 |
| Msa1065390 | Msa1181190 | 0.814826 | 1.263945e-51 | -8.615850e-47 |
| Msa1071770 | Msa1181190 | 0.836410 | 9.510806e-57 | -8.615850e-47 |
| Msa1078170 | Msa1181190 | 0.827876 | 1.228023e-54 | -8.615850e-47 |
| Msa1085200 | Msa1181190 | 0.816353 | 5.776821e-52 | -8.615850e-47 |
| Msa1093530 | Msa1181190 | 0.826815 | 2.205506e-54 | -8.615850e-47 |
| Msa1093840 | Msa1181190 | 0.801968 | 7.010135e-49 | -8.615850e-47 |
| Msa0254790 | Msa1181190 | 0.826227 | 3.045726e-54 | -8.615850e-47 |
| Msa0258310 | Msa1181190 | 0.823848 | 1.110657e-53 | -8.615850e-47 |
| Msa0259430 | Msa1181190 | 0.806574 | 7.699579e-50 | -8.615850e-47 |
| Msa0266350 | Msa1181190 | 0.808810 | 2.579143e-50 | -8.615850e-47 |
| Msa0267920 | Msa1181190 | 0.822401 | 2.416247e-53 | -8.615850e-47 |
| Msa0277450 | Msa1181190 | 0.805843 | 1.097382e-49 | -8.615850e-47 |
| Msa0287650 | Msa1181190 | 0.823028 | 1.726962e-53 | -8.615850e-47 |
| Msa0287740 | Msa1181190 | 0.802599 | 5.197159e-49 | -8.615850e-47 |
| Msa0297790 | Msa1181190 | 0.842696 | 2.208182e-58 | -8.615850e-47 |
| Msa0300270 | Msa1181190 | 0.810384 | 1.184047e-50 | -8.615850e-47 |
| Msa0300320 | Msa1181190 | 0.818651 | 1.753809e-52 | -8.615850e-47 |
| Msa0302160 | Msa1181190 | 0.829296 | 5.574038e-55 | -8.615850e-47 |
| Msa0302170 | Msa1181190 | 0.814905 | 1.214373e-51 | -8.615850e-47 |
| Msa0305610 | Msa1181190 | 0.806236 | 9.071607e-50 | -8.615850e-47 |
| Msa0326590 | Msa1181190 | 0.805118 | 1.557600e-49 | -8.615850e-47 |
| Msa0330340 | Msa1181190 | 0.802238 | 6.169456e-49 | -8.615850e-47 |
| Msa0335800 | Msa1181190 | 0.831501 | 1.610434e-55 | -8.615850e-47 |
| Msa0337700 | Msa1181190 | 0.824744 | 6.839143e-54 | -8.615850e-47 |
| Msa0339490 | Msa1181190 | 0.829318 | 5.506093e-55 | -8.615850e-47 |
| Msa0346060 | Msa1181190 | 0.818396 | 2.003710e-52 | -8.615850e-47 |
| Msa0357020 | Msa1181190 | 0.805854 | 1.091611e-49 | -8.615850e-47 |
| Msa0361080 | Msa1181190 | 0.813646 | 2.303830e-51 | -8.615850e-47 |
| Msa0363070 | Msa1181190 | 0.805730 | 1.159501e-49 | -8.615850e-47 |
| Msa1113800 | Msa1181190 | 0.872737 | 2.527633e-67 | -8.615850e-47 |
| Msa1123380 | Msa1181190 | 0.840233 | 9.835404e-58 | -8.615850e-47 |
| Msa1125940 | Msa1181190 | 0.813144 | 2.969187e-51 | -8.615850e-47 |
| Msa1132700 | Msa1181190 | 0.826942 | 2.056035e-54 | -8.615850e-47 |
| Msa1139890 | Msa1181190 | 0.812076 | 5.086171e-51 | -8.615850e-47 |
| Msa1142020 | Msa1181190 | 0.816246 | 6.104868e-52 | -8.615850e-47 |
| Msa1150820 | Msa1181190 | 0.801831 | 7.479325e-49 | -8.615850e-47 |
| Msa1151910 | Msa1181190 | 0.837629 | 4.644268e-57 | -8.615850e-47 |
| Msa1158830 | Msa1181190 | 0.829699 | 4.448666e-55 | -8.615850e-47 |
| Msa1160500 | Msa1181190 | 0.877241 | 7.360043e-69 | -8.615850e-47 |
| Msa1168160 | Msa1181190 | 0.807786 | 4.262896e-50 | -8.615850e-47 |
| Msa1181190 | Msa1184330 | 0.808229 | 3.432158e-50 | -8.615850e-47 |
| Msa1181190 | Msa1193290 | 0.821887 | 3.179829e-53 | -8.615850e-47 |
| Msa1181190 | Msa1199570 | 0.801525 | 8.641538e-49 | -8.615850e-47 |
| Msa1181190 | Msa1208160 | 0.830775 | 2.427968e-55 | -8.615850e-47 |
| Msa1181190 | Msa1208430 | 0.804518 | 2.078985e-49 | -8.615850e-47 |
| Msa1181190 | Msa1209460 | 0.800092 | 1.695104e-48 | -8.615850e-47 |
| Msa1181190 | Msa1218600 | 0.808451 | 3.076968e-50 | -8.615850e-47 |
| Msa1181190 | Msa1227940 | 0.801608 | 8.308503e-49 | -8.615850e-47 |
| Msa1181190 | Msa1271990 | 0.801775 | 7.680292e-49 | -8.615850e-47 |
| Msa1181190 | Msa1276660 | 0.828427 | 9.045324e-55 | -8.615850e-47 |
| Msa1181190 | Msa1297290 | 0.802753 | 4.831622e-49 | -8.615850e-47 |
| Msa1181190 | Msa1298370 | 0.819769 | 9.761974e-53 | -8.615850e-47 |
| Msa1181190 | Msa1303250 | 0.801945 | 7.087001e-49 | -8.615850e-47 |
| Msa1181190 | Msa1308140 | 0.831123 | 1.994683e-55 | -8.615850e-47 |
| Msa1181190 | Msa1328710 | 0.812685 | 3.743897e-51 | -8.615850e-47 |
| Msa1181190 | Msa1341890 | 0.806556 | 7.766048e-50 | -8.615850e-47 |
| Msa1181190 | Msa1353980 | 0.827499 | 1.512681e-54 | -8.615850e-47 |
| Msa1181190 | Msa1356830 | 0.827102 | 1.883107e-54 | -8.615850e-47 |
| Msa1181190 | Msa1361400 | 0.810164 | 1.320934e-50 | -8.615850e-47 |
| Msa1181190 | Msa1373100 | 0.818300 | 2.106722e-52 | -8.615850e-47 |
| Msa1181190 | Msa1385000 | 0.801342 | 9.421960e-49 | -8.615850e-47 |
| Msa1181190 | Msa1400870 | -0.825267 | 5.144656e-54 | -8.615850e-47 |
| Msa1181190 | Msa1422580 | 0.804836 | 1.784280e-49 | -8.615850e-47 |
| Msa1181190 | Msa1422950 | 0.818301 | 2.105289e-52 | -8.615850e-47 |
| Msa1181190 | Msa1437940 | 0.820280 | 7.456542e-53 | -8.615850e-47 |
| Msa1181190 | Msa1439610 | 0.814608 | 1.412510e-51 | -8.615850e-47 |
| Msa1181190 | Msa1446820 | 0.828060 | 1.108652e-54 | -8.615850e-47 |
| Msa1181190 | Msa1451160 | 0.832008 | 1.207926e-55 | -8.615850e-47 |
| Msa1181190 | Msa1464810 | 0.812613 | 3.882728e-51 | -8.615850e-47 |
| Msa0495320 | Msa1181190 | 0.811071 | 8.408704e-51 | -8.615850e-47 |
| Msa0498060 | Msa1181190 | 0.802133 | 6.481531e-49 | -8.615850e-47 |
| Msa0507680 | Msa1181190 | 0.811459 | 6.928769e-51 | -8.615850e-47 |
| Msa0572840 | Msa1181190 | 0.801325 | 9.498054e-49 | -8.615850e-47 |
| Msa0574390 | Msa1181190 | 0.823114 | 1.648526e-53 | -8.615850e-47 |
| Msa0580440 | Msa1181190 | 0.814041 | 1.885358e-51 | -8.615850e-47 |
| Msa0589510 | Msa1181190 | 0.807145 | 5.832266e-50 | -8.615850e-47 |
| Msa0601750 | Msa1181190 | 0.803551 | 3.303150e-49 | -8.615850e-47 |
| Msa0846770 | Msa1181190 | 0.808022 | 3.798797e-50 | -8.615850e-47 |
| Msa0863010 | Msa1181190 | 0.834301 | 3.244096e-56 | -8.615850e-47 |
| Msa0870550 | Msa1181190 | 0.800453 | 1.431351e-48 | -8.615850e-47 |
| Msa0880140 | Msa1181190 | 0.823364 | 1.441144e-53 | -8.615850e-47 |
| Msa0898750 | Msa1181190 | 0.801839 | 7.448950e-49 | -8.615850e-47 |
| Msa0902760 | Msa1181190 | 0.825108 | 5.608964e-54 | -8.615850e-47 |
| Msa0922410 | Msa1181190 | 0.825835 | 3.773643e-54 | -8.615850e-47 |
| Msa0926470 | Msa1181190 | 0.800088 | 1.697704e-48 | -8.615850e-47 |
| Msa0928130 | Msa1181190 | 0.803614 | 3.204738e-49 | -8.615850e-47 |
| Msa0964310 | Msa1181190 | 0.814498 | 1.494596e-51 | -8.615850e-47 |
| Msa0966400 | Msa1181190 | 0.811383 | 7.196790e-51 | -8.615850e-47 |
| Msa0967870 | Msa1181190 | 0.804611 | 1.987969e-49 | -8.615850e-47 |
| Msa0972100 | Msa1181190 | 0.804416 | 2.183076e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1181190 | MtrunA17_Chr8g0339951 | 94.463 | 307 | 15 | 1 | 1 | 305 | 1 | 307 | 0.0 | 590 |
| Msa1181190 | MtrunA17_Chr8g0378341 | 54.902 | 306 | 133 | 4 | 1 | 302 | 104 | 408 | 6.90e-93 | 281 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1181190 | AT1G04850.2 | 55.195 | 308 | 132 | 4 | 1 | 302 | 17 | 324 | 5.01e-95 | 284 |
| Msa1181190 | AT1G04850.1 | 55.195 | 308 | 132 | 4 | 1 | 302 | 106 | 413 | 3.45e-94 | 285 |
| Msa1181190 | AT5G48690.1 | 50.325 | 308 | 143 | 7 | 6 | 304 | 12 | 318 | 3.31e-87 | 264 |
| Msa1181190 | AT5G48690.2 | 53.922 | 204 | 87 | 5 | 107 | 304 | 66 | 268 | 1.88e-62 | 199 |
| Msa1181190 | AT5G48690.3 | 47.826 | 207 | 101 | 5 | 6 | 206 | 12 | 217 | 3.16e-47 | 159 |
Find 58 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATGAAAGCACAGTATTTA+AGG | 0.147947 | 8_1:-15516956 | Msa1181190:intron |
| CTTCTATTTGCTTGCATGAT+TGG | 0.213192 | 8_1:-15517830 | Msa1181190:five_prime_UTR |
| GATAGAGTTGGAAGTTTAGA+TGG | 0.214147 | 8_1:-15514153 | Msa1181190:CDS |
| ATTCTCATTTCTTCTGTGAT+AGG | 0.247492 | 8_1:+15516975 | None:intergenic |
| AAATGTCTTACTTGGAATAA+TGG | 0.248440 | 8_1:+15514369 | None:intergenic |
| AACTCATTATTAATTTAGTT+TGG | 0.285158 | 8_1:-15513975 | Msa1181190:three_prime_UTR |
| AAGGCATGTATAATGTTAAA+TGG | 0.308157 | 8_1:-15513936 | Msa1181190:three_prime_UTR |
| TTCCTTTACAGTTAAATAGA+AGG | 0.370449 | 8_1:-15515232 | Msa1181190:intron |
| CAACTCTTCTAGTGAGTTGA+AGG | 0.373722 | 8_1:+15517803 | None:intergenic |
| ACAAGAGCACTGTACTATTC+TGG | 0.377911 | 8_1:-15517465 | Msa1181190:intron |
| AATAGGCAATAACAGCTTAG+AGG | 0.406935 | 8_1:-15517216 | Msa1181190:intron |
| GCAATGACAAATCCTTACTT+TGG | 0.409516 | 8_1:-15514015 | Msa1181190:CDS |
| CTGGTGATCTCACATTTGCT+TGG | 0.411365 | 8_1:+15515183 | None:intergenic |
| GCTTGAAGACCTTGAAGAAA+TGG | 0.417815 | 8_1:-15517508 | Msa1181190:CDS |
| AGCACTTGAGAGAATGTTTG+AGG | 0.424843 | 8_1:-15514984 | Msa1181190:CDS |
| CTTGTATCTTCCTAGTGAAA+AGG | 0.431080 | 8_1:-15514082 | Msa1181190:CDS |
| TTCTCATTTCTTCTGTGATA+GGG | 0.431613 | 8_1:+15516976 | None:intergenic |
| GTGGAAATGCCATTTCTTCA+AGG | 0.434871 | 8_1:+15517499 | None:intergenic |
| ACATTTGCTTGGCTTTCTAA+AGG | 0.450784 | 8_1:+15515194 | None:intergenic |
| TCTTGCTTTATCACAATGGC+TGG | 0.454277 | 8_1:+15515164 | None:intergenic |
| TATTAATTTAGTTTGGAAAG+TGG | 0.463958 | 8_1:-15513968 | Msa1181190:three_prime_UTR |
| TTAAATAGAAGGTCTGTACT+TGG | 0.465070 | 8_1:-15515221 | Msa1181190:CDS |
| TATCCTGCTCTAGTTTCTTG+AGG | 0.473441 | 8_1:+15515595 | None:intergenic |
| ATTTATACTCAAAATCTCAT+AGG | 0.478689 | 8_1:-15517773 | Msa1181190:five_prime_UTR |
| CAAGTGCCAAAGAAAATAGA+AGG | 0.479539 | 8_1:+15517732 | None:intergenic |
| GAAACACTTCTAGTGTATGT+TGG | 0.482560 | 8_1:-15514447 | Msa1181190:CDS |
| AAGAAAATAGAAGGTAGCTA+AGG | 0.503657 | 8_1:+15517741 | None:intergenic |
| CAAGAAACTAGAGCAGGATA+AGG | 0.505428 | 8_1:-15515592 | Msa1181190:intron |
| TTTCTTTAACAGGATAGAGT+TGG | 0.506570 | 8_1:-15514165 | Msa1181190:intron |
| AATAGAAGAATGAAATGCTA+TGG | 0.506637 | 8_1:+15517845 | None:intergenic |
| CGGAAGAAAATGAAAGAAAA+CGG | 0.506897 | 8_1:-15515767 | Msa1181190:intron |
| GTACTTAAAAGTCCAAAGTA+AGG | 0.507326 | 8_1:+15514003 | None:intergenic |
| GCTCTTGTTGCCCTTGCATG+TGG | 0.512999 | 8_1:+15517480 | None:intergenic |
| CATTGTGATAAAGCAAGAAA+AGG | 0.520403 | 8_1:-15515159 | Msa1181190:intron |
| AAGAAGAAGAACAAAGAGCT+AGG | 0.531028 | 8_1:-15515626 | Msa1181190:CDS |
| TCTTCTGTGATAGGGAATGA+TGG | 0.531487 | 8_1:+15516984 | None:intergenic |
| GAAGGTAGCTAAGGAAGCTA+TGG | 0.537079 | 8_1:+15517750 | None:intergenic |
| ATGGAACTACTAAGTTCAGC+TGG | 0.537946 | 8_1:-15514054 | Msa1181190:CDS |
| AGAGTTGGAAGTTTAGATGG+AGG | 0.539241 | 8_1:-15514150 | Msa1181190:CDS |
| GCTTAGAGGATGCTATAACT+TGG | 0.541270 | 8_1:-15517202 | Msa1181190:CDS |
| GTAGAGTTTCTTGAGCTATG+TGG | 0.542378 | 8_1:-15514126 | Msa1181190:CDS |
| TGGAAAGTGGATTAATGCAA+AGG | 0.546737 | 8_1:-15513955 | Msa1181190:three_prime_UTR |
| AGAGGATGCTATAACTTGGA+TGG | 0.549716 | 8_1:-15517198 | Msa1181190:CDS |
| GTGAAAATGCAAGAATCAGA+AGG | 0.554564 | 8_1:-15514476 | Msa1181190:CDS |
| GTCTCTCAAGCGTGAACACA+AGG | 0.558102 | 8_1:-15514962 | Msa1181190:intron |
| ATACACTAGAAGTGTTTCAA+AGG | 0.560419 | 8_1:+15514452 | None:intergenic |
| AAATGGCATTTCCACATGCA+AGG | 0.567048 | 8_1:-15517491 | Msa1181190:CDS |
| TCCTAGTGAAAAGGTTGACA+TGG | 0.567134 | 8_1:-15514073 | Msa1181190:CDS |
| GCAGGGAACAAGTGCGAGAG+AGG | 0.569066 | 8_1:-15516588 | Msa1181190:intron |
| CATCCTCAAGAAACTAGAGC+AGG | 0.588545 | 8_1:-15515598 | Msa1181190:CDS |
| AATGGCATTTCCACATGCAA+GGG | 0.602200 | 8_1:-15517490 | Msa1181190:CDS |
| TCTTGAGGCAAAGCGGATTG+CGG | 0.602925 | 8_1:-15515787 | Msa1181190:CDS |
| AGATATTGATGAGATTCCGT+TGG | 0.608755 | 8_1:-15517156 | Msa1181190:intron |
| AAATGTTGTCAAGAATCCTA+AGG | 0.615510 | 8_1:-15514424 | Msa1181190:CDS |
| ATCAGGTAAGAAACTTCTTG+AGG | 0.616254 | 8_1:-15515802 | Msa1181190:CDS |
| TGAAAATGCAAGAATCAGAA+GGG | 0.643372 | 8_1:-15514475 | Msa1181190:CDS |
| TGTGATAGGGAATGATGGAG+AGG | 0.655551 | 8_1:+15516989 | None:intergenic |
| AGAAACTTCTTGAGGCAAAG+CGG | 0.679777 | 8_1:-15515794 | Msa1181190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTATATATTTTTTTCTTT+TGG | - | chr8_1:15514783-15514802 | Msa1181190:intron | 10.0% |
| !!! | CAATTATTTTTTAATGTTTT+AGG | - | chr8_1:15517840-15517859 | Msa1181190:five_prime_UTR | 10.0% |
| !!! | TCATTTTATTTTTGTAGAAA+TGG | - | chr8_1:15514127-15514146 | Msa1181190:CDS | 15.0% |
| !! | ATAAAAAGAAGAAAAAATGA+GGG | + | chr8_1:15514563-15514582 | None:intergenic | 15.0% |
| !! | TATAAAAAGAAGAAAAAATG+AGG | + | chr8_1:15514564-15514583 | None:intergenic | 15.0% |
| !!! | TAATTTGTTAAAATCTTAAC+AGG | - | chr8_1:15514647-15514666 | Msa1181190:intron | 15.0% |
| !! | TGAAGAAGTTAATAAAATTA+AGG | + | chr8_1:15515160-15515179 | None:intergenic | 15.0% |
| !!! | TTTAAAACCAATATCTTTTT+AGG | + | chr8_1:15517487-15517506 | None:intergenic | 15.0% |
| !! | AACTCATTATTAATTTAGTT+TGG | - | chr8_1:15517708-15517727 | Msa1181190:intron | 15.0% |
| !! | ATTTATACTCAAAATCTCAT+AGG | - | chr8_1:15513910-15513929 | Msa1181190:three_prime_UTR | 20.0% |
| !!! | ATGAAGGATTTTCAAAAATA+TGG | + | chr8_1:15514037-15514056 | None:intergenic | 20.0% |
| !! | AATCAAAACATTTGTGTTTA+AGG | + | chr8_1:15514446-15514465 | None:intergenic | 20.0% |
| !!! | CACAAATGTTTTGATTTAAT+AGG | - | chr8_1:15514450-15514469 | Msa1181190:CDS | 20.0% |
| !!! | TTTAAAACTTTGATTTGCAT+TGG | - | chr8_1:15514622-15514641 | Msa1181190:intron | 20.0% |
| !!! | CTATTTTTTCAAGCTATTAT+CGG | - | chr8_1:15514861-15514880 | Msa1181190:intron | 20.0% |
| !!! | TCTGAATATAATTTTATGAG+TGG | + | chr8_1:15514985-15515004 | None:intergenic | 20.0% |
| !!! | TATAATATTTAAGTGTTGCA+GGG | - | chr8_1:15515078-15515097 | Msa1181190:intron | 20.0% |
| !! | AAAGAACGAAGAAAAAATAA+TGG | - | chr8_1:15515120-15515139 | Msa1181190:intron | 20.0% |
| !!! | AAAAATAATGGAAAGAGAAA+AGG | - | chr8_1:15515132-15515151 | Msa1181190:intron | 20.0% |
| !! | ATAAACAAATGCAAATGAAA+TGG | - | chr8_1:15515284-15515303 | Msa1181190:intron | 20.0% |
| !! | AAAGAAATATTAGAAGATGA+TGG | + | chr8_1:15515415-15515434 | None:intergenic | 20.0% |
| !!! | TTTGAACAAACCATTATTTT+CGG | + | chr8_1:15515499-15515518 | None:intergenic | 20.0% |
| !! | ATCACAATGTTATTAAATAG+TGG | + | chr8_1:15515669-15515688 | None:intergenic | 20.0% |
| !! | AAGATAATGAAAATCTATGT+TGG | + | chr8_1:15515831-15515850 | None:intergenic | 20.0% |
| !!! | GATTTTCATTATCTTTTCAA+TGG | - | chr8_1:15515836-15515855 | Msa1181190:intron | 20.0% |
| !! | AAACTCTTCAAGAAAATATT+TGG | + | chr8_1:15516132-15516151 | None:intergenic | 20.0% |
| !! | AAAATAAACTCAACAACTTA+TGG | + | chr8_1:15516310-15516329 | None:intergenic | 20.0% |
| !!! | CATCTATGTTCATTTTATAT+TGG | - | chr8_1:15516556-15516575 | Msa1181190:CDS | 20.0% |
| !! | CTAAATCTTATACATTTCAA+TGG | - | chr8_1:15516633-15516652 | Msa1181190:intron | 20.0% |
| !! | CATTTGAAAAAACAAATGTA+TGG | + | chr8_1:15517155-15517174 | None:intergenic | 20.0% |
| !! | TCAATATTCAAATTCTCTAT+AGG | - | chr8_1:15517184-15517203 | Msa1181190:CDS | 20.0% |
| !! | CAATATTCAAATTCTCTATA+GGG | - | chr8_1:15517185-15517204 | Msa1181190:CDS | 20.0% |
| !!! | TTTTCCAAAACAAAACATAT+TGG | - | chr8_1:15517334-15517353 | Msa1181190:intron | 20.0% |
| !!! | TATTAATTTAGTTTGGAAAG+TGG | - | chr8_1:15517715-15517734 | Msa1181190:intron | 20.0% |
| ! | AATAGAAGAATGAAATGCTA+TGG | + | chr8_1:15513841-15513860 | None:intergenic | 25.0% |
| ! | TATGTTTCTTCTATGTTCTT+TGG | - | chr8_1:15514388-15514407 | Msa1181190:CDS | 25.0% |
| !! | GAATATAATTTTATGAGTGG+AGG | + | chr8_1:15514982-15515001 | None:intergenic | 25.0% |
| ! | TAAATATTATAGCGAAACAC+AGG | + | chr8_1:15515069-15515088 | None:intergenic | 25.0% |
| !! | CTATAATATTTAAGTGTTGC+AGG | - | chr8_1:15515077-15515096 | Msa1181190:intron | 25.0% |
| ! | AATGTGATGAAGCAAATATA+AGG | + | chr8_1:15515226-15515245 | None:intergenic | 25.0% |
| ! | ATTGTAAAATAGCAGGTATA+AGG | + | chr8_1:15515548-15515567 | None:intergenic | 25.0% |
| ! | CCAAAATATTGTAAAATAGC+AGG | + | chr8_1:15515555-15515574 | None:intergenic | 25.0% |
| !!! | CCTGCTATTTTACAATATTT+TGG | - | chr8_1:15515552-15515571 | Msa1181190:intron | 25.0% |
| ! | ACAATGTTATTAAATAGTGG+CGG | + | chr8_1:15515666-15515685 | None:intergenic | 25.0% |
| !! | ACTATGATTTTCACTAATTC+TGG | - | chr8_1:15515774-15515793 | Msa1181190:CDS | 25.0% |
| !! | CTTTTCAATGGTATGATTTT+AGG | - | chr8_1:15515848-15515867 | Msa1181190:intron | 25.0% |
| !! | CTTGATGATTACTATTTACT+AGG | - | chr8_1:15515942-15515961 | Msa1181190:intron | 25.0% |
| ! | TTCTAACTATATCAATCTCT+TGG | - | chr8_1:15516385-15516404 | Msa1181190:intron | 25.0% |
| !! | GGAAAAGGTATACAAAAAAA+AGG | + | chr8_1:15516435-15516454 | None:intergenic | 25.0% |
| ! | CTATTTAACTGTAAAGGAAA+AGG | + | chr8_1:15516450-15516469 | None:intergenic | 25.0% |
| ! | TTCCTTTACAGTTAAATAGA+AGG | - | chr8_1:15516451-15516470 | Msa1181190:intron | 25.0% |
| ! | TTAGATAACACAATCTCAAA+AGG | + | chr8_1:15516617-15516636 | None:intergenic | 25.0% |
| ! | CTATACTTAAACATAACTCT+TGG | - | chr8_1:15516814-15516833 | Msa1181190:intron | 25.0% |
| !! | GACATGTTAGTTGTTATTAT+CGG | - | chr8_1:15517056-15517075 | Msa1181190:intron | 25.0% |
| ! | AAATGTCTTACTTGGAATAA+TGG | + | chr8_1:15517317-15517336 | None:intergenic | 25.0% |
| !!! | ACATCCAATATGTTTTGTTT+TGG | + | chr8_1:15517341-15517360 | None:intergenic | 25.0% |
| ! | AAAACAAAACATATTGGATG+TGG | - | chr8_1:15517340-15517359 | Msa1181190:intron | 25.0% |
| ! | AAGGCATGTATAATGTTAAA+TGG | - | chr8_1:15517747-15517766 | Msa1181190:five_prime_UTR | 25.0% |
| AAGAAAATAGAAGGTAGCTA+AGG | + | chr8_1:15513945-15513964 | None:intergenic | 30.0% | |
| ! | TAGCTACCTTCTATTTTCTT+TGG | - | chr8_1:15513945-15513964 | Msa1181190:three_prime_UTR | 30.0% |
| ! | TTTTCTTTGGCACTTGTAAA+AGG | - | chr8_1:15513958-15513977 | Msa1181190:three_prime_UTR | 30.0% |
| ACATGTTACATGAAAGATGA+AGG | + | chr8_1:15514053-15514072 | None:intergenic | 30.0% | |
| ! | AGCAACTTTTCATTCACTTT+TGG | + | chr8_1:15514158-15514177 | None:intergenic | 30.0% |
| CAATTCTTAGGTATCTAATG+AGG | + | chr8_1:15514352-15514371 | None:intergenic | 30.0% | |
| TTCTCATTTCTTCTGTGATA+GGG | + | chr8_1:15514710-15514729 | None:intergenic | 30.0% | |
| ATTCTCATTTCTTCTGTGAT+AGG | + | chr8_1:15514711-15514730 | None:intergenic | 30.0% | |
| ! | GAATGAAAGCACAGTATTTA+AGG | - | chr8_1:15514727-15514746 | Msa1181190:intron | 30.0% |
| !! | TTTACAAGCCAGTTTTATAG+GGG | + | chr8_1:15514949-15514968 | None:intergenic | 30.0% |
| !! | CTTTACAAGCCAGTTTTATA+GGG | + | chr8_1:15514950-15514969 | None:intergenic | 30.0% |
| !! | ACTTTACAAGCCAGTTTTAT+AGG | + | chr8_1:15514951-15514970 | None:intergenic | 30.0% |
| AGACATTAACTCATTCATTC+TGG | - | chr8_1:15515002-15515021 | Msa1181190:CDS | 30.0% | |
| GACATTAACTCATTCATTCT+GGG | - | chr8_1:15515003-15515022 | Msa1181190:CDS | 30.0% | |
| !! | ATTCATTCTGGGATTCTTAA+CGG | - | chr8_1:15515014-15515033 | Msa1181190:CDS | 30.0% |
| ! | TAGCGCAACTTATAGATTTT+TGG | + | chr8_1:15515723-15515742 | None:intergenic | 30.0% |
| CGGAAGAAAATGAAAGAAAA+CGG | - | chr8_1:15515916-15515935 | Msa1181190:intron | 30.0% | |
| !! | TTCTTTTTCTGCTTTTCTCA+AGG | + | chr8_1:15516042-15516061 | None:intergenic | 30.0% |
| TATGAAAACAAGCTATTCTG+AGG | + | chr8_1:15516346-15516365 | None:intergenic | 30.0% | |
| !! | AATCTCTTGGTAGTTCTAAA+GGG | - | chr8_1:15516398-15516417 | Msa1181190:intron | 30.0% |
| !! | GTAGTTCTAAAGGGTTTAAA+TGG | - | chr8_1:15516407-15516426 | Msa1181190:intron | 30.0% |
| GACCTTCTATTTAACTGTAA+AGG | + | chr8_1:15516456-15516475 | None:intergenic | 30.0% | |
| TTAAATAGAAGGTCTGTACT+TGG | - | chr8_1:15516462-15516481 | Msa1181190:intron | 30.0% | |
| ! | CTTTTCTTGCTTTATCACAA+TGG | + | chr8_1:15516526-15516545 | None:intergenic | 30.0% |
| CATTGTGATAAAGCAAGAAA+AGG | - | chr8_1:15516524-15516543 | Msa1181190:intron | 30.0% | |
| ! | ACTTTTGTGGTTGTATAAAC+AGG | + | chr8_1:15516677-15516696 | None:intergenic | 30.0% |
| TCCAATGTTTATGTTCATGA+CGG | + | chr8_1:15516899-15516918 | None:intergenic | 30.0% | |
| ! | TGTTATGTGGAGAAATTTTC+AGG | + | chr8_1:15516995-15517014 | None:intergenic | 30.0% |
| CCTATTACTACTATGTTATG+TGG | + | chr8_1:15517008-15517027 | None:intergenic | 30.0% | |
| CCACATAACATAGTAGTAAT+AGG | - | chr8_1:15517005-15517024 | Msa1181190:CDS | 30.0% | |
| ! | GTTAGTTGTTATTATCGGTA+CGG | - | chr8_1:15517061-15517080 | Msa1181190:intron | 30.0% |
| TGAAAATGCAAGAATCAGAA+GGG | - | chr8_1:15517208-15517227 | Msa1181190:CDS | 30.0% | |
| !! | ATACACTAGAAGTGTTTCAA+AGG | + | chr8_1:15517234-15517253 | None:intergenic | 30.0% |
| AAATGTTGTCAAGAATCCTA+AGG | - | chr8_1:15517259-15517278 | Msa1181190:intron | 30.0% | |
| ATCCTAAGGAAGAAAAATAC+AGG | - | chr8_1:15517273-15517292 | Msa1181190:intron | 30.0% | |
| ! | TTCCTGTATTTTTCTTCCTT+AGG | + | chr8_1:15517278-15517297 | None:intergenic | 30.0% |
| !!! | GTTTTGGAAAATGTCTTACT+TGG | + | chr8_1:15517325-15517344 | None:intergenic | 30.0% |
| GCATGTACCTAAAAAGATAT+TGG | - | chr8_1:15517477-15517496 | Msa1181190:CDS | 30.0% | |
| TTCTTCCACATTTCTTTAAC+AGG | - | chr8_1:15517508-15517527 | Msa1181190:CDS | 30.0% | |
| TCTATCCTGTTAAAGAAATG+TGG | + | chr8_1:15517516-15517535 | None:intergenic | 30.0% | |
| TTTCTTTAACAGGATAGAGT+TGG | - | chr8_1:15517518-15517537 | Msa1181190:CDS | 30.0% | |
| GTACTTAAAAGTCCAAAGTA+AGG | + | chr8_1:15517683-15517702 | None:intergenic | 30.0% | |
| CTTCTATTTGCTTGCATGAT+TGG | - | chr8_1:15513853-15513872 | Msa1181190:three_prime_UTR | 35.0% | |
| CAAGTGCCAAAGAAAATAGA+AGG | + | chr8_1:15513954-15513973 | None:intergenic | 35.0% | |
| AATAGGCAATAACAGCTTAG+AGG | - | chr8_1:15514467-15514486 | Msa1181190:CDS | 35.0% | |
| AGATATTGATGAGATTCCGT+TGG | - | chr8_1:15514527-15514546 | Msa1181190:intron | 35.0% | |
| TCTCTATGATAGTTGAGAGA+AGG | + | chr8_1:15514762-15514781 | None:intergenic | 35.0% | |
| !! | AGTTTTATAGGGGTTGAGTT+AGG | + | chr8_1:15514939-15514958 | None:intergenic | 35.0% |
| TAACTCAACCCCTATAAAAC+TGG | - | chr8_1:15514938-15514957 | Msa1181190:intron | 35.0% | |
| TTAACGGTCTGTGTCTATAT+TGG | - | chr8_1:15515030-15515049 | Msa1181190:intron | 35.0% | |
| GTGATGAAGCAAATATAAGG+AGG | + | chr8_1:15515223-15515242 | None:intergenic | 35.0% | |
| GAAGAATTTACCAAAGTCTC+AGG | - | chr8_1:15515306-15515325 | Msa1181190:intron | 35.0% | |
| AGGTATTCAGCATAGGTATA+TGG | - | chr8_1:15515326-15515345 | Msa1181190:intron | 35.0% | |
| ATTCAGCATAGGTATATGGT+AGG | - | chr8_1:15515330-15515349 | Msa1181190:intron | 35.0% | |
| ! | TCGATCAGTGTTGTTAACTA+CGG | - | chr8_1:15515469-15515488 | Msa1181190:intron | 35.0% |
| TTGGACTAAATAGCACATGA+TGG | - | chr8_1:15515571-15515590 | Msa1181190:intron | 35.0% | |
| !! | CAATGGTATGATTTTAGGAG+AGG | - | chr8_1:15515853-15515872 | Msa1181190:intron | 35.0% |
| !! | TTTTAGGAGAGGATTCAATC+AGG | - | chr8_1:15515864-15515883 | Msa1181190:intron | 35.0% |
| ATCAGGTAAGAAACTTCTTG+AGG | - | chr8_1:15515881-15515900 | Msa1181190:intron | 35.0% | |
| AGGCTAAATTCCTGACAATA+GGG | + | chr8_1:15516022-15516041 | None:intergenic | 35.0% | |
| AAGGCTAAATTCCTGACAAT+AGG | + | chr8_1:15516023-15516042 | None:intergenic | 35.0% | |
| AAGAAGAAGAACAAAGAGCT+AGG | - | chr8_1:15516057-15516076 | Msa1181190:intron | 35.0% | |
| GTATAAGCCAATCAAAGAAC+TGG | + | chr8_1:15516219-15516238 | None:intergenic | 35.0% | |
| !! | CAATCTCTTGGTAGTTCTAA+AGG | - | chr8_1:15516397-15516416 | Msa1181190:intron | 35.0% |
| ! | ACATTTGCTTGGCTTTCTAA+AGG | + | chr8_1:15516492-15516511 | None:intergenic | 35.0% |
| CTTAAACATAACTCTTGGCA+TGG | - | chr8_1:15516819-15516838 | Msa1181190:intron | 35.0% | |
| ! | GTTTATGTTCATGACGGTTT+TGG | + | chr8_1:15516893-15516912 | None:intergenic | 35.0% |
| ACCGTCATGAACATAAACAT+TGG | - | chr8_1:15516895-15516914 | Msa1181190:intron | 35.0% | |
| ACATGTCTATCAGAAACCTA+CGG | + | chr8_1:15517043-15517062 | None:intergenic | 35.0% | |
| GTGAAAATGCAAGAATCAGA+AGG | - | chr8_1:15517207-15517226 | Msa1181190:CDS | 35.0% | |
| GAAACACTTCTAGTGTATGT+TGG | - | chr8_1:15517236-15517255 | Msa1181190:intron | 35.0% | |
| GATAGAGTTGGAAGTTTAGA+TGG | - | chr8_1:15517530-15517549 | Msa1181190:CDS | 35.0% | |
| CTTGTATCTTCCTAGTGAAA+AGG | - | chr8_1:15517601-15517620 | Msa1181190:intron | 35.0% | |
| GCAATGACAAATCCTTACTT+TGG | - | chr8_1:15517668-15517687 | Msa1181190:intron | 35.0% | |
| !! | TGGAAAGTGGATTAATGCAA+AGG | - | chr8_1:15517728-15517747 | Msa1181190:five_prime_UTR | 35.0% |
| ! | CAACTCTTCTAGTGAGTTGA+AGG | + | chr8_1:15513883-15513902 | None:intergenic | 40.0% |
| GCTTGAAGACCTTGAAGAAA+TGG | - | chr8_1:15514175-15514194 | Msa1181190:intron | 40.0% | |
| ! | GTGGAAATGCCATTTCTTCA+AGG | + | chr8_1:15514187-15514206 | None:intergenic | 40.0% |
| AAATGGCATTTCCACATGCA+AGG | - | chr8_1:15514192-15514211 | Msa1181190:intron | 40.0% | |
| AATGGCATTTCCACATGCAA+GGG | - | chr8_1:15514193-15514212 | Msa1181190:intron | 40.0% | |
| !! | ACAAGAGCACTGTACTATTC+TGG | - | chr8_1:15514218-15514237 | Msa1181190:intron | 40.0% |
| ! | GCACAAGAAGCACAATTCTT+AGG | + | chr8_1:15514364-15514383 | None:intergenic | 40.0% |
| GCTTAGAGGATGCTATAACT+TGG | - | chr8_1:15514481-15514500 | Msa1181190:intron | 40.0% | |
| AGAGGATGCTATAACTTGGA+TGG | - | chr8_1:15514485-15514504 | Msa1181190:intron | 40.0% | |
| TCTTCTGTGATAGGGAATGA+TGG | + | chr8_1:15514702-15514721 | None:intergenic | 40.0% | |
| AACAAGTGCTAGTGTAGTGT+CGG | + | chr8_1:15514823-15514842 | None:intergenic | 40.0% | |
| ! | CAATGCCCAATTCTAAGAAC+CGG | + | chr8_1:15514915-15514934 | None:intergenic | 40.0% |
| ATGCTGAATACCTGAGACTT+TGG | + | chr8_1:15515319-15515338 | None:intergenic | 40.0% | |
| AAGTCTCAGGTATTCAGCAT+AGG | - | chr8_1:15515319-15515338 | Msa1181190:intron | 40.0% | |
| ! | CTACGGATTGCCGAAAATAA+TGG | - | chr8_1:15515486-15515505 | Msa1181190:intron | 40.0% |
| CACTATAGACTATAGCGTAG+TGG | + | chr8_1:15515622-15515641 | None:intergenic | 40.0% | |
| CGCTATAGTCTATAGTGCTT+TGG | - | chr8_1:15515625-15515644 | Msa1181190:CDS | 40.0% | |
| AGAAACTTCTTGAGGCAAAG+CGG | - | chr8_1:15515889-15515908 | Msa1181190:intron | 40.0% | |
| ! | TATCCTGCTCTAGTTTCTTG+AGG | + | chr8_1:15516091-15516110 | None:intergenic | 40.0% |
| CAAGAAACTAGAGCAGGATA+AGG | - | chr8_1:15516091-15516110 | Msa1181190:intron | 40.0% | |
| GTTTGCACCAGTTCTTTGAT+TGG | - | chr8_1:15516209-15516228 | Msa1181190:intron | 40.0% | |
| AGACTACTTGAGAGAGCTTA+TGG | - | chr8_1:15516268-15516287 | Msa1181190:intron | 40.0% | |
| !! | AAACAAGCTATTCTGAGGTG+AGG | + | chr8_1:15516341-15516360 | None:intergenic | 40.0% |
| TCTTGCTTTATCACAATGGC+TGG | + | chr8_1:15516522-15516541 | None:intergenic | 40.0% | |
| ! | TCTCAAGTGCTCAACTTTTG+TGG | + | chr8_1:15516690-15516709 | None:intergenic | 40.0% |
| AGCACTTGAGAGAATGTTTG+AGG | - | chr8_1:15516699-15516718 | Msa1181190:intron | 40.0% | |
| !! | AGGATGTGTTGACTACTCAT+CGG | + | chr8_1:15516975-15516994 | None:intergenic | 40.0% |
| TCTATCAGAAACCTACGGAA+AGG | + | chr8_1:15517038-15517057 | None:intergenic | 40.0% | |
| AGAGTTGGAAGTTTAGATGG+AGG | - | chr8_1:15517533-15517552 | Msa1181190:CDS | 40.0% | |
| GTAGAGTTTCTTGAGCTATG+TGG | - | chr8_1:15517557-15517576 | Msa1181190:intron | 40.0% | |
| !!! | CTATGTGGTTTTGAGAGAAG+TGG | - | chr8_1:15517572-15517591 | Msa1181190:intron | 40.0% |
| TCCTAGTGAAAAGGTTGACA+TGG | - | chr8_1:15517610-15517629 | Msa1181190:intron | 40.0% | |
| ! | TCCATGTCAACCTTTTCACT+AGG | + | chr8_1:15517614-15517633 | None:intergenic | 40.0% |
| ATGGAACTACTAAGTTCAGC+TGG | - | chr8_1:15517629-15517648 | Msa1181190:intron | 40.0% | |
| GAAGGTAGCTAAGGAAGCTA+TGG | + | chr8_1:15513936-15513955 | None:intergenic | 45.0% | |
| !! | TGAGGGTGTGAAAGTACCAA+CGG | + | chr8_1:15514546-15514565 | None:intergenic | 45.0% |
| ! | TGTGATAGGGAATGATGGAG+AGG | + | chr8_1:15514697-15514716 | None:intergenic | 45.0% |
| GTCTGTGTTTATGTCGTGTC+CGG | - | chr8_1:15514893-15514912 | Msa1181190:intron | 45.0% | |
| TCGTGTCCGGTTCTTAGAAT+TGG | - | chr8_1:15514906-15514925 | Msa1181190:intron | 45.0% | |
| CGTGTCCGGTTCTTAGAATT+GGG | - | chr8_1:15514907-15514926 | Msa1181190:intron | 45.0% | |
| CGGTTCTTAGAATTGGGCAT+TGG | - | chr8_1:15514913-15514932 | Msa1181190:intron | 45.0% | |
| TGCTTTGGCGCTGCTATATA+TGG | - | chr8_1:15515640-15515659 | Msa1181190:CDS | 45.0% | |
| CTCATGATTGCCCTATTGTC+AGG | - | chr8_1:15516009-15516028 | Msa1181190:intron | 45.0% | |
| CATCCTCAAGAAACTAGAGC+AGG | - | chr8_1:15516085-15516104 | Msa1181190:intron | 45.0% | |
| CTGGTGATCTCACATTTGCT+TGG | + | chr8_1:15516503-15516522 | None:intergenic | 45.0% | |
| ! | GTTCCTATGAAGCACCAACA+CGG | + | chr8_1:15516953-15516972 | None:intergenic | 45.0% |
| CATATTGGATGTGGAGTCGT+AGG | - | chr8_1:15517349-15517368 | Msa1181190:intron | 45.0% | |
| !! | AAAACAAAAATAAAAATAAA+GGG | + | chr8_1:15514011-15514030 | None:intergenic | 5.0% |
| !! | TAAAACAAAAATAAAAATAA+AGG | + | chr8_1:15514012-15514031 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTGTA+AGG | - | chr8_1:15515980-15515999 | Msa1181190:intron | 5.0% |
| !! | TCTTGAGGCAAAGCGGATTG+CGG | - | chr8_1:15515896-15515915 | Msa1181190:intron | 50.0% |
| GTCTCTCAAGCGTGAACACA+AGG | - | chr8_1:15516721-15516740 | Msa1181190:intron | 50.0% | |
| ! | ACACCGTGTTGGTGCTTCAT+AGG | - | chr8_1:15516947-15516966 | Msa1181190:intron | 50.0% |
| TAGGATGCATGCCTTTCCGT+AGG | - | chr8_1:15517024-15517043 | Msa1181190:intron | 50.0% | |
| GCTCTTGTTGCCCTTGCATG+TGG | + | chr8_1:15514206-15514225 | None:intergenic | 55.0% | |
| GCAGGGAACAAGTGCGAGAG+AGG | - | chr8_1:15515095-15515114 | Msa1181190:intron | 60.0% | |
| ACGACACGTCGACACCGTGT+TGG | - | chr8_1:15516936-15516955 | Msa1181190:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 15513825 | 15517880 | 15513825 | ID=Msa1181190;Name=Msa1181190 |
| chr8_1 | mRNA | 15513825 | 15517880 | 15513825 | ID=Msa1181190-mRNA-1;Parent=Msa1181190;Name=Msa1181190-mRNA-1;_AED=0.11;_eAED=0.11;_QI=157|1|1|1|0.9|0.90|11|171|305 |
| chr8_1 | exon | 15513825 | 15514175 | 15513825 | ID=Msa1181190-mRNA-1:exon:5853;Parent=Msa1181190-mRNA-1 |
| chr8_1 | exon | 15514380 | 15514499 | 15514380 | ID=Msa1181190-mRNA-1:exon:5852;Parent=Msa1181190-mRNA-1 |
| chr8_1 | exon | 15514963 | 15515040 | 15514963 | ID=Msa1181190-mRNA-1:exon:5851;Parent=Msa1181190-mRNA-1 |
| chr8_1 | exon | 15515160 | 15515243 | 15515160 | ID=Msa1181190-mRNA-1:exon:5850;Parent=Msa1181190-mRNA-1 |
| chr8_1 | exon | 15515593 | 15515674 | 15515593 | ID=Msa1181190-mRNA-1:exon:5849;Parent=Msa1181190-mRNA-1 |
| chr8_1 | exon | 15515768 | 15515835 | 15515768 | ID=Msa1181190-mRNA-1:exon:5848;Parent=Msa1181190-mRNA-1 |
| chr8_1 | exon | 15516552 | 15516606 | 15516552 | ID=Msa1181190-mRNA-1:exon:5847;Parent=Msa1181190-mRNA-1 |
| chr8_1 | exon | 15516957 | 15517036 | 15516957 | ID=Msa1181190-mRNA-1:exon:5846;Parent=Msa1181190-mRNA-1 |
| chr8_1 | exon | 15517157 | 15517233 | 15517157 | ID=Msa1181190-mRNA-1:exon:5845;Parent=Msa1181190-mRNA-1 |
| chr8_1 | exon | 15517466 | 15517561 | 15517466 | ID=Msa1181190-mRNA-1:exon:5844;Parent=Msa1181190-mRNA-1 |
| chr8_1 | exon | 15517726 | 15517880 | 15517726 | ID=Msa1181190-mRNA-1:exon:5843;Parent=Msa1181190-mRNA-1 |
| chr8_1 | five_prime_UTR | 15517726 | 15517880 | 15517726 | ID=Msa1181190-mRNA-1:five_prime_utr;Parent=Msa1181190-mRNA-1 |
| chr8_1 | five_prime_UTR | 15517560 | 15517561 | 15517560 | ID=Msa1181190-mRNA-1:five_prime_utr;Parent=Msa1181190-mRNA-1 |
| chr8_1 | CDS | 15517466 | 15517559 | 15517466 | ID=Msa1181190-mRNA-1:cds;Parent=Msa1181190-mRNA-1 |
| chr8_1 | CDS | 15517157 | 15517233 | 15517157 | ID=Msa1181190-mRNA-1:cds;Parent=Msa1181190-mRNA-1 |
| chr8_1 | CDS | 15516957 | 15517036 | 15516957 | ID=Msa1181190-mRNA-1:cds;Parent=Msa1181190-mRNA-1 |
| chr8_1 | CDS | 15516552 | 15516606 | 15516552 | ID=Msa1181190-mRNA-1:cds;Parent=Msa1181190-mRNA-1 |
| chr8_1 | CDS | 15515768 | 15515835 | 15515768 | ID=Msa1181190-mRNA-1:cds;Parent=Msa1181190-mRNA-1 |
| chr8_1 | CDS | 15515593 | 15515674 | 15515593 | ID=Msa1181190-mRNA-1:cds;Parent=Msa1181190-mRNA-1 |
| chr8_1 | CDS | 15515160 | 15515243 | 15515160 | ID=Msa1181190-mRNA-1:cds;Parent=Msa1181190-mRNA-1 |
| chr8_1 | CDS | 15514963 | 15515040 | 15514963 | ID=Msa1181190-mRNA-1:cds;Parent=Msa1181190-mRNA-1 |
| chr8_1 | CDS | 15514380 | 15514499 | 15514380 | ID=Msa1181190-mRNA-1:cds;Parent=Msa1181190-mRNA-1 |
| chr8_1 | CDS | 15513996 | 15514175 | 15513996 | ID=Msa1181190-mRNA-1:cds;Parent=Msa1181190-mRNA-1 |
| chr8_1 | three_prime_UTR | 15513825 | 15513995 | 15513825 | ID=Msa1181190-mRNA-1:three_prime_utr;Parent=Msa1181190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
