Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0907690 | XP_013451196.1 | 97.275 | 367 | 10 | 0 | 1 | 367 | 1 | 367 | 0.0 | 738 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0907690 | sp|Q96CN4|EVI5L_HUMAN | 39.576 | 283 | 162 | 5 | 63 | 342 | 91 | 367 | 3.04e-59 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015390 | Msa0907690 | 0.817185 | 3.759560e-52 | -8.615850e-47 |
| Msa0117710 | Msa0907690 | 0.820353 | 7.173299e-53 | -8.615850e-47 |
| Msa0661650 | Msa0907690 | 0.804700 | 1.904339e-49 | -8.615850e-47 |
| Msa0672690 | Msa0907690 | 0.834356 | 3.142749e-56 | -8.615850e-47 |
| Msa0703780 | Msa0907690 | 0.804541 | 2.056167e-49 | -8.615850e-47 |
| Msa0716530 | Msa0907690 | 0.804166 | 2.461351e-49 | -8.615850e-47 |
| Msa0724210 | Msa0907690 | 0.801941 | 7.099310e-49 | -8.615850e-47 |
| Msa0807470 | Msa0907690 | 0.818016 | 2.442761e-52 | -8.615850e-47 |
| Msa0811080 | Msa0907690 | 0.802421 | 5.655025e-49 | -8.615850e-47 |
| Msa0813400 | Msa0907690 | 0.803799 | 2.934484e-49 | -8.615850e-47 |
| Msa0211150 | Msa0907690 | 0.816203 | 6.240478e-52 | -8.615850e-47 |
| Msa0367870 | Msa0907690 | 0.801614 | 8.287767e-49 | -8.615850e-47 |
| Msa0411390 | Msa0907690 | 0.802173 | 6.361203e-49 | -8.615850e-47 |
| Msa0464680 | Msa0907690 | 0.818304 | 2.102014e-52 | -8.615850e-47 |
| Msa0274730 | Msa0907690 | 0.800844 | 1.191048e-48 | -8.615850e-47 |
| Msa0315530 | Msa0907690 | 0.805544 | 1.268077e-49 | -8.615850e-47 |
| Msa0357340 | Msa0907690 | 0.812840 | 3.462195e-51 | -8.615850e-47 |
| Msa0585230 | Msa0907690 | 0.840085 | 1.074991e-57 | -8.615850e-47 |
| Msa0846770 | Msa0907690 | 0.817489 | 3.211649e-52 | -8.615850e-47 |
| Msa0907690 | Msa0909120 | 0.803876 | 2.827882e-49 | -8.615850e-47 |
| Msa0907690 | Msa0927310 | 0.801705 | 7.938279e-49 | -8.615850e-47 |
| Msa0907690 | Msa0931520 | 0.850426 | 1.711061e-60 | -8.615850e-47 |
| Msa0907690 | Msa0969450 | 0.802769 | 4.794844e-49 | -8.615850e-47 |
| Msa0907690 | Msa0969600 | 0.816443 | 5.515335e-52 | -8.615850e-47 |
| Msa0907690 | Msa0989360 | 0.807871 | 4.090905e-50 | -8.615850e-47 |
| Msa0907690 | Msa1001180 | 0.805887 | 1.074373e-49 | -8.615850e-47 |
| Msa0907690 | Msa1014540 | 0.802655 | 5.060287e-49 | -8.615850e-47 |
| Msa0907690 | Msa1019000 | 0.834517 | 2.863069e-56 | -8.615850e-47 |
| Msa0907690 | Msa1019150 | 0.801037 | 1.087638e-48 | -8.615850e-47 |
| Msa0907690 | Msa1065010 | 0.826814 | 2.206279e-54 | -8.615850e-47 |
| Msa0907690 | Msa1075650 | 0.811045 | 8.519189e-51 | -8.615850e-47 |
| Msa0907690 | Msa1101860 | 0.836248 | 1.045916e-56 | -8.615850e-47 |
| Msa0907690 | Msa1104090 | 0.802121 | 6.520542e-49 | -8.615850e-47 |
| Msa0907690 | Msa1119940 | 0.802711 | 4.929187e-49 | -8.615850e-47 |
| Msa0907690 | Msa1120740 | 0.811040 | 8.541497e-51 | -8.615850e-47 |
| Msa0907690 | Msa1121490 | 0.815369 | 9.574865e-52 | -8.615850e-47 |
| Msa0907690 | Msa1122520 | 0.800165 | 1.638132e-48 | -8.615850e-47 |
| Msa0907690 | Msa1147740 | 0.811500 | 6.785937e-51 | -8.615850e-47 |
| Msa0907690 | Msa1152440 | 0.829812 | 4.175210e-55 | -8.615850e-47 |
| Msa0907690 | Msa1233910 | 0.808155 | 3.559376e-50 | -8.615850e-47 |
| Msa0907690 | Msa1282580 | -0.803000 | 4.294803e-49 | -8.615850e-47 |
| Msa0907690 | Msa1284680 | 0.810141 | 1.335915e-50 | -8.615850e-47 |
| Msa0907690 | Msa1296760 | 0.802134 | 6.478785e-49 | -8.615850e-47 |
| Msa0907690 | Msa1322890 | 0.809883 | 1.518212e-50 | -8.615850e-47 |
| Msa0907690 | Msa1331000 | 0.810717 | 1.003275e-50 | -8.615850e-47 |
| Msa0907690 | Msa1372760 | 0.826651 | 2.413993e-54 | -8.615850e-47 |
| Msa0907690 | Msa1402730 | 0.800984 | 1.115252e-48 | -8.615850e-47 |
| Msa0907690 | Msa1420820 | 0.807081 | 6.015109e-50 | -8.615850e-47 |
| Msa0907690 | Msa1466540 | 0.809343 | 1.982898e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0907690 | MtrunA17_Chr6g0456341 | 97.275 | 367 | 10 | 0 | 1 | 367 | 1 | 367 | 0.0 | 738 |
| Msa0907690 | MtrunA17_Chr5g0448071 | 34.902 | 255 | 155 | 5 | 79 | 327 | 105 | 354 | 1.23e-39 | 144 |
| Msa0907690 | MtrunA17_Chr1g0181831 | 33.482 | 224 | 124 | 5 | 84 | 291 | 299 | 513 | 2.88e-30 | 122 |
| Msa0907690 | MtrunA17_Chr1g0213391 | 31.915 | 235 | 126 | 5 | 84 | 291 | 242 | 469 | 4.36e-28 | 115 |
| Msa0907690 | MtrunA17_Chr2g0329691 | 26.909 | 275 | 146 | 8 | 86 | 313 | 150 | 416 | 4.12e-18 | 85.5 |
| Msa0907690 | MtrunA17_Chr4g0033831 | 27.007 | 274 | 145 | 8 | 87 | 313 | 158 | 423 | 1.23e-15 | 77.8 |
| Msa0907690 | MtrunA17_Chr3g0121451 | 24.901 | 253 | 167 | 8 | 98 | 332 | 183 | 430 | 3.73e-13 | 70.5 |
| Msa0907690 | MtrunA17_Chr4g0064141 | 26.230 | 183 | 125 | 5 | 129 | 306 | 431 | 608 | 1.95e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0907690 | AT5G15930.1 | 79.944 | 354 | 69 | 1 | 1 | 354 | 1 | 352 | 0.0 | 588 |
| Msa0907690 | AT3G02460.1 | 82.857 | 350 | 57 | 3 | 1 | 348 | 1 | 349 | 0.0 | 588 |
| Msa0907690 | AT3G02460.3 | 83.434 | 332 | 54 | 1 | 1 | 331 | 1 | 332 | 0.0 | 569 |
| Msa0907690 | AT3G02460.2 | 77.077 | 349 | 59 | 2 | 1 | 348 | 1 | 329 | 0.0 | 539 |
| Msa0907690 | AT3G02460.4 | 82.274 | 299 | 52 | 1 | 1 | 298 | 1 | 299 | 0.0 | 505 |
| Msa0907690 | AT3G02460.5 | 81.338 | 284 | 50 | 3 | 1 | 282 | 1 | 283 | 3.78e-167 | 468 |
| Msa0907690 | AT3G07890.1 | 34.118 | 255 | 157 | 5 | 79 | 327 | 108 | 357 | 2.39e-37 | 139 |
| Msa0907690 | AT3G07890.4 | 34.118 | 255 | 157 | 5 | 79 | 327 | 108 | 357 | 2.39e-37 | 139 |
| Msa0907690 | AT3G07890.5 | 34.118 | 255 | 157 | 5 | 79 | 327 | 108 | 357 | 2.39e-37 | 139 |
| Msa0907690 | AT3G07890.2 | 34.118 | 255 | 157 | 5 | 79 | 327 | 108 | 357 | 2.39e-37 | 139 |
| Msa0907690 | AT3G07890.3 | 34.118 | 255 | 157 | 5 | 79 | 327 | 108 | 357 | 2.39e-37 | 139 |
| Msa0907690 | AT2G37290.3 | 34.562 | 217 | 126 | 5 | 84 | 291 | 314 | 523 | 4.13e-31 | 125 |
| Msa0907690 | AT2G37290.1 | 34.562 | 217 | 126 | 5 | 84 | 291 | 314 | 523 | 5.04e-31 | 125 |
| Msa0907690 | AT2G37290.2 | 31.076 | 251 | 123 | 7 | 84 | 291 | 314 | 557 | 1.16e-27 | 115 |
| Msa0907690 | AT3G55020.1 | 33.047 | 233 | 124 | 6 | 84 | 291 | 241 | 466 | 8.73e-23 | 100 |
| Msa0907690 | AT3G55020.3 | 33.047 | 233 | 124 | 6 | 84 | 291 | 241 | 466 | 1.49e-22 | 99.8 |
| Msa0907690 | AT3G55020.2 | 33.047 | 233 | 124 | 6 | 84 | 291 | 241 | 466 | 1.50e-22 | 99.8 |
| Msa0907690 | AT2G39280.1 | 29.237 | 236 | 131 | 5 | 84 | 292 | 228 | 454 | 1.57e-19 | 90.9 |
| Msa0907690 | AT2G39280.2 | 29.237 | 236 | 131 | 5 | 84 | 292 | 256 | 482 | 1.83e-19 | 90.5 |
| Msa0907690 | AT2G30710.1 | 25.424 | 354 | 193 | 12 | 16 | 313 | 70 | 408 | 2.59e-19 | 89.4 |
| Msa0907690 | AT1G04830.1 | 26.570 | 207 | 125 | 8 | 129 | 313 | 227 | 428 | 2.04e-11 | 65.5 |
| Msa0907690 | AT1G04830.2 | 26.570 | 207 | 125 | 8 | 129 | 313 | 227 | 428 | 2.09e-11 | 65.5 |
Find 123 sgRNAs with CRISPR-Local
Find 437 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAATTCCTGATTGTTTA+AGG | 0.138057 | 6_2:-6443993 | Msa0907690:CDS |
| CATCATGGCAGTACTTTAAT+AGG | 0.180072 | 6_2:+6442295 | None:intergenic |
| TCCATTTGGCTCTTCGAATC+TGG | 0.189355 | 6_2:-6442448 | Msa0907690:CDS |
| TATCATCTACTTGTGTTCTT+AGG | 0.195948 | 6_2:-6439644 | Msa0907690:three_prime_UTR |
| TGTATATCTAAAGACTGATA+TGG | 0.235365 | 6_2:-6439600 | Msa0907690:three_prime_UTR |
| AGGGGAGAAGGGTTAGAAAA+TGG | 0.270941 | 6_2:-6444098 | Msa0907690:CDS |
| GTCTGGATGCTTGGAAGAAT+TGG | 0.281872 | 6_2:+6439827 | None:intergenic |
| TACTCTTGCTTCAATTGGTC+TGG | 0.295003 | 6_2:+6439810 | None:intergenic |
| TGTTATACTCTTGCTTCAAT+TGG | 0.307978 | 6_2:+6439805 | None:intergenic |
| TTATTGGTGGCATTACTTAA+AGG | 0.308020 | 6_2:-6443453 | Msa0907690:CDS |
| CCCAATGGAGGGACTCTATC+TGG | 0.318018 | 6_2:-6443418 | Msa0907690:intron |
| GAAAACCTAATGTTGTTAAA+AGG | 0.321177 | 6_2:-6444026 | Msa0907690:CDS |
| AATTTCATTCTTTACATTGT+AGG | 0.324299 | 6_2:+6439547 | None:intergenic |
| TAGGTTTGGGTTTATAAAAC+AGG | 0.326893 | 6_2:-6444284 | Msa0907690:CDS |
| AAGCTATGCCATTGGTGTTC+TGG | 0.330570 | 6_2:-6444397 | Msa0907690:five_prime_UTR |
| ATATAATTCGAGACATTTCC+CGG | 0.332656 | 6_2:-6443729 | Msa0907690:CDS |
| TTGGGGTTGGTGGGAGTGAT+TGG | 0.337850 | 6_2:-6444065 | Msa0907690:CDS |
| TGAGCGAGGAGGATGCATTT+TGG | 0.339928 | 6_2:-6443476 | Msa0907690:CDS |
| CCATTTGGCTCTTCGAATCT+GGG | 0.342963 | 6_2:-6442447 | Msa0907690:CDS |
| CAAGAGCGTTGGATAGGTTT+GGG | 0.343604 | 6_2:-6444297 | Msa0907690:CDS |
| GGTCACATATAAAGAATCTA+AGG | 0.345751 | 6_2:+6439705 | None:intergenic |
| CCAAGAGCGTTGGATAGGTT+TGG | 0.347993 | 6_2:-6444298 | Msa0907690:CDS |
| CTTCAATTGGTCTGGATGCT+TGG | 0.348693 | 6_2:+6439818 | None:intergenic |
| ATTGTTTAAGGGGCCTTGTT+TGG | 0.353818 | 6_2:-6443981 | Msa0907690:CDS |
| GAAAATGGAGGAAGATGATT+GGG | 0.374851 | 6_2:-6444083 | Msa0907690:CDS |
| CAATTAAAATTCCAGGGAAT+GGG | 0.376623 | 6_2:-6443528 | Msa0907690:intron |
| GTATTCCTTTCCATTCCATT+TGG | 0.381264 | 6_2:-6442462 | Msa0907690:CDS |
| ATGTTGTTAAAAGGCGTATA+AGG | 0.382064 | 6_2:-6444017 | Msa0907690:CDS |
| GACCAGGTCCATGTCTTTGC+TGG | 0.383615 | 6_2:+6443683 | None:intergenic |
| CTTGGTGAAGGAACTGGACT+TGG | 0.391535 | 6_2:+6444316 | None:intergenic |
| TCAGATAAGGAAGAGTTTAG+AGG | 0.400347 | 6_2:-6439915 | Msa0907690:intron |
| CAGAATTAAGGAGGGGAGAA+GGG | 0.402504 | 6_2:-6444109 | Msa0907690:CDS |
| CTTGTTTGGCAGTTAATATC+TGG | 0.404322 | 6_2:-6443967 | Msa0907690:CDS |
| GCTAGGATTTATCATTTCTT+CGG | 0.407421 | 6_2:+6442520 | None:intergenic |
| AACGCTCTTGGTGAAGGAAC+TGG | 0.418783 | 6_2:+6444310 | None:intergenic |
| CCTCTTTCAATTTGAACGCT+TGG | 0.420703 | 6_2:-6442579 | Msa0907690:CDS |
| CGAGACATCAGCCTCTGAAC+TGG | 0.428563 | 6_2:-6443752 | Msa0907690:CDS |
| ACCTCGGAAATTGGAAATGA+AGG | 0.429725 | 6_2:+6446163 | None:intergenic |
| CTCCAGGATTCATGAGCAAT+AGG | 0.429903 | 6_2:+6443935 | None:intergenic |
| TCAGAATTAAGGAGGGGAGA+AGG | 0.433945 | 6_2:-6444110 | Msa0907690:intron |
| AGGGAGCATCTACCGAAGTT+AGG | 0.434047 | 6_2:-6442554 | Msa0907690:CDS |
| CCAGATAGAGTCCCTCCATT+GGG | 0.436323 | 6_2:+6443418 | None:intergenic |
| CAGAGACGTAGGATATGTTC+AGG | 0.439338 | 6_2:-6443617 | Msa0907690:intron |
| GTATATCTAAAGACTGATAT+GGG | 0.443185 | 6_2:-6439599 | Msa0907690:three_prime_UTR |
| AGGAATTCCTGATTGTTTAA+GGG | 0.446845 | 6_2:-6443992 | Msa0907690:CDS |
| AGAAAATGGAGGAAGATGAT+TGG | 0.449742 | 6_2:-6444084 | Msa0907690:CDS |
| TCAGGATTCATTGCATCCTC+AGG | 0.454288 | 6_2:+6442143 | None:intergenic |
| AGGAAGATGATTGGGGTTGG+TGG | 0.458992 | 6_2:-6444075 | Msa0907690:CDS |
| CTGGGATGTCTTTCTCTATG+AGG | 0.465996 | 6_2:-6442429 | Msa0907690:intron |
| TCCCTCCATTGGGGCGTGAA+CGG | 0.470882 | 6_2:+6443428 | None:intergenic |
| ATCATGGCAGTACTTTAATA+GGG | 0.471038 | 6_2:+6442296 | None:intergenic |
| GACCTATTGCTCATGAATCC+TGG | 0.474375 | 6_2:-6443937 | Msa0907690:CDS |
| TCCTGACACGTTATTGCCGC+TGG | 0.476954 | 6_2:-6442126 | Msa0907690:CDS |
| ACAAGGCCCCTTAAACAATC+AGG | 0.477733 | 6_2:+6443985 | None:intergenic |
| ATACATGTGAAGGGAAAGTC+CGG | 0.481559 | 6_2:+6443710 | None:intergenic |
| TTGTAGAGGGACCGCTGACC+AGG | 0.485256 | 6_2:+6443667 | None:intergenic |
| GCCAGCGGCAATAACGTGTC+AGG | 0.491734 | 6_2:+6442125 | None:intergenic |
| GCATGTATCAGTTTCTCAAA+TGG | 0.499612 | 6_2:+6442179 | None:intergenic |
| TTCAATTTGAACGCTTGGTG+AGG | 0.501511 | 6_2:-6442574 | Msa0907690:CDS |
| AGGAAGGAAGAGAACCTTGA+TGG | 0.502239 | 6_2:+6442097 | None:intergenic |
| CCAAACCTATCCAACGCTCT+TGG | 0.511402 | 6_2:+6444298 | None:intergenic |
| AACGGAAAGATGAGTCGATC+CGG | 0.513702 | 6_2:-6439866 | Msa0907690:CDS |
| ACCAGATAGAGTCCCTCCAT+TGG | 0.514386 | 6_2:+6443417 | None:intergenic |
| CTTCACCAAGAGCGTTGGAT+AGG | 0.519596 | 6_2:-6444303 | Msa0907690:CDS |
| TGCTGGAAGAATACATGTGA+AGG | 0.521392 | 6_2:+6443700 | None:intergenic |
| GCCGCTGGCTTATTCCATCA+AGG | 0.523342 | 6_2:-6442111 | Msa0907690:intron |
| GGAATTCCTGATTGTTTAAG+GGG | 0.525448 | 6_2:-6443991 | Msa0907690:CDS |
| CCAAGCGTTCAAATTGAAAG+AGG | 0.528363 | 6_2:+6442579 | None:intergenic |
| GTAAAATGTTCTCCTAACTT+CGG | 0.533581 | 6_2:+6442542 | None:intergenic |
| TCAATTTGAACGCTTGGTGA+GGG | 0.535468 | 6_2:-6442573 | Msa0907690:CDS |
| AAAGTACTGCCATGATGACT+TGG | 0.536251 | 6_2:-6442289 | Msa0907690:intron |
| AGCCGTTCACGCCCCAATGG+AGG | 0.537817 | 6_2:-6443430 | Msa0907690:CDS |
| CCCAGATTCGAAGAGCCAAA+TGG | 0.538950 | 6_2:+6442447 | None:intergenic |
| GGAAGATGATTGGGGTTGGT+GGG | 0.544484 | 6_2:-6444074 | Msa0907690:CDS |
| AGTTCCTTCACCAAGAGCGT+TGG | 0.544965 | 6_2:-6444308 | Msa0907690:CDS |
| GGAAATGAAGGTTCGATCGA+TGG | 0.549781 | 6_2:+6446175 | None:intergenic |
| AATTAAAATTCCAGGGAATG+GGG | 0.550698 | 6_2:-6443527 | Msa0907690:intron |
| GATTCATGAGCAATAGGTCT+CGG | 0.551811 | 6_2:+6443941 | None:intergenic |
| TGGACTTGGTTCATAGTCAT+CGG | 0.551972 | 6_2:+6444330 | None:intergenic |
| TCTCACACTAGCAGCAAAAG+AGG | 0.554003 | 6_2:+6439735 | None:intergenic |
| AAAATACAGTTATGAACCAC+TGG | 0.556277 | 6_2:+6442486 | None:intergenic |
| CATATAAAGAATCTAAGGGT+AGG | 0.559306 | 6_2:+6439710 | None:intergenic |
| TTTCATCATTCACATTTACA+AGG | 0.561701 | 6_2:-6446103 | Msa0907690:intron |
| ATTCGAAGAGCCAAATGGAA+TGG | 0.564193 | 6_2:+6442452 | None:intergenic |
| GTTAAAAGGCGTATAAGGAA+AGG | 0.564586 | 6_2:-6444012 | Msa0907690:CDS |
| TTTGCTTCTTTATATGAGCG+AGG | 0.566953 | 6_2:-6443490 | Msa0907690:CDS |
| ACAGGATGCTAACACTTCTG+AGG | 0.570828 | 6_2:-6444266 | Msa0907690:CDS |
| ATATAACTGTACAGAGAATG+TGG | 0.572807 | 6_2:+6439683 | None:intergenic |
| TGGATTACCTCGTAAACTCC+AGG | 0.573883 | 6_2:+6443919 | None:intergenic |
| TTCTAAAACCAGAACACCAA+TGG | 0.575942 | 6_2:+6444389 | None:intergenic |
| TGGAGGAAGATGATTGGGGT+TGG | 0.576638 | 6_2:-6444078 | Msa0907690:CDS |
| ACCTTCATTTCCAATTTCCG+AGG | 0.577200 | 6_2:-6446164 | Msa0907690:five_prime_UTR |
| CACTGGCTTGCATACATGCT+AGG | 0.579164 | 6_2:+6442503 | None:intergenic |
| ACGGAGGCAAGCTATGCCAT+TGG | 0.579270 | 6_2:-6444405 | Msa0907690:five_prime_UTR |
| CTATCCAACGCTCTTGGTGA+AGG | 0.580925 | 6_2:+6444304 | None:intergenic |
| TGATACTTACCAAGTCATCA+TGG | 0.583234 | 6_2:+6442280 | None:intergenic |
| CAGGATGCTAACACTTCTGA+GGG | 0.597770 | 6_2:-6444265 | Msa0907690:CDS |
| GTGATTGGAAGCATTACCTA+AGG | 0.601355 | 6_2:-6444050 | Msa0907690:CDS |
| ATGGAAGAAAGAAGAAACGA+TGG | 0.602038 | 6_2:+6446194 | None:intergenic |
| GCTGGAAGAATACATGTGAA+GGG | 0.604825 | 6_2:+6443701 | None:intergenic |
| GGAGAAGGGTTAGAAAATGG+AGG | 0.607258 | 6_2:-6444095 | Msa0907690:CDS |
| GTATTCTTCCAGCAAAGACA+TGG | 0.611629 | 6_2:-6443691 | Msa0907690:CDS |
| TCGAATTATATCCAGTTCAG+AGG | 0.613218 | 6_2:+6443741 | None:intergenic |
| CAAGAGTATGAGAAGAAGAA+CGG | 0.614406 | 6_2:-6439884 | Msa0907690:CDS |
| CAGATATTAACTGCCAAACA+AGG | 0.614959 | 6_2:+6443968 | None:intergenic |
| CATGAATCCTGGAGTTTACG+AGG | 0.618952 | 6_2:-6443926 | Msa0907690:intron |
| AAGAGCCAAATGGAATGGAA+AGG | 0.619876 | 6_2:+6442457 | None:intergenic |
| TGTCATTGTAATGTTTACGG+AGG | 0.629157 | 6_2:-6444421 | Msa0907690:five_prime_UTR |
| CAGGATTCATTGCATCCTCA+GGG | 0.632655 | 6_2:+6442144 | None:intergenic |
| TCAGTATTTGACAGAGACGT+AGG | 0.634382 | 6_2:-6443628 | Msa0907690:CDS |
| AAAATGGAGGAAGATGATTG+GGG | 0.635829 | 6_2:-6444082 | Msa0907690:CDS |
| CAGATAGAGTCCCTCCATTG+GGG | 0.637651 | 6_2:+6443419 | None:intergenic |
| GTCACATATAAAGAATCTAA+GGG | 0.639236 | 6_2:+6439706 | None:intergenic |
| TACATGTGAAGGGAAAGTCC+GGG | 0.641031 | 6_2:+6443711 | None:intergenic |
| TTCCAGCAAAGACATGGACC+TGG | 0.647628 | 6_2:-6443685 | Msa0907690:CDS |
| TATAACTGTACAGAGAATGT+GGG | 0.651838 | 6_2:+6439684 | None:intergenic |
| TAGGAAACAAGATGAACGAA+CGG | 0.655170 | 6_2:+6439566 | None:intergenic |
| GCTTCTTTATATGAGCGAGG+AGG | 0.660085 | 6_2:-6443487 | Msa0907690:CDS |
| AAGAGGTATTGCTGTACGAG+AGG | 0.662170 | 6_2:+6442596 | None:intergenic |
| TGTAGATACAGATAGTGTTG+AGG | 0.668582 | 6_2:-6439492 | Msa0907690:three_prime_UTR |
| AAAGACATGGACCTGGTCAG+CGG | 0.668620 | 6_2:-6443678 | Msa0907690:CDS |
| CTAGCATGTATGCAAGCCAG+TGG | 0.685345 | 6_2:-6442502 | Msa0907690:CDS |
| ACCTTGATGGAATAAGCCAG+CGG | 0.706325 | 6_2:+6442110 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTGATTTTCAATTT+TGG | - | chr6_2:6439650-6439669 | Msa0907690:three_prime_UTR | 10.0% |
| !!! | TTTATTTGATTTTCAATTTT+GGG | - | chr6_2:6439651-6439670 | Msa0907690:three_prime_UTR | 10.0% |
| !! | TTATTAAAGTATATAAGATA+AGG | - | chr6_2:6441059-6441078 | Msa0907690:intron | 10.0% |
| !!! | TCTTGATTTTTTAAAATTTT+GGG | + | chr6_2:6442457-6442476 | None:intergenic | 10.0% |
| !!! | ATCTTGATTTTTTAAAATTT+TGG | + | chr6_2:6442458-6442477 | None:intergenic | 10.0% |
| !! | TTCAAAAAAAAAAAAAAAGA+AGG | + | chr6_2:6444416-6444435 | None:intergenic | 10.0% |
| !! | TAATAAACTAATAAACCTAT+AGG | + | chr6_2:6440420-6440439 | None:intergenic | 15.0% |
| !! | AAACTAAAATAGAAACTATT+AGG | - | chr6_2:6440691-6440710 | Msa0907690:intron | 15.0% |
| !! | TATATGTCAATCAAAATTAT+CGG | + | chr6_2:6440862-6440881 | None:intergenic | 15.0% |
| !! | TACATTAATTAAGATCAATT+TGG | + | chr6_2:6440958-6440977 | None:intergenic | 15.0% |
| !!! | AATATTTTAAATTAGATGCA+TGG | - | chr6_2:6442426-6442445 | Msa0907690:intron | 15.0% |
| !! | AACAATAATTGTGATAAAAA+AGG | + | chr6_2:6443074-6443093 | None:intergenic | 15.0% |
| !!! | GTTAAAATTGTTTTTAAAGT+TGG | - | chr6_2:6443390-6443409 | Msa0907690:intron | 15.0% |
| !! | AATGAACAGTAATAACAAAA+GGG | + | chr6_2:6439689-6439708 | None:intergenic | 20.0% |
| !! | AAATGAACAGTAATAACAAA+AGG | + | chr6_2:6439690-6439709 | None:intergenic | 20.0% |
| !! | TACATTATACCTCAATATAA+AGG | + | chr6_2:6440305-6440324 | None:intergenic | 20.0% |
| !! | TTTATATTGAGGTATAATGT+AGG | - | chr6_2:6440304-6440323 | Msa0907690:intron | 20.0% |
| !!! | GTTTCTATTTTAGTTTTTCT+AGG | + | chr6_2:6440687-6440706 | None:intergenic | 20.0% |
| !! | TAATGAGTTAGATAGAAATA+TGG | - | chr6_2:6440728-6440747 | Msa0907690:intron | 20.0% |
| !! | TGATTGACATATATCATATA+AGG | - | chr6_2:6440869-6440888 | Msa0907690:intron | 20.0% |
| !! | TTAATTAAGATCAATTTGGA+GGG | + | chr6_2:6440954-6440973 | None:intergenic | 20.0% |
| !! | ATTAATTAAGATCAATTTGG+AGG | + | chr6_2:6440955-6440974 | None:intergenic | 20.0% |
| !! | ACTTAACTACAAAATGAAAT+TGG | + | chr6_2:6441035-6441054 | None:intergenic | 20.0% |
| !!! | TTTGCATAAAATGTTTTTTC+TGG | - | chr6_2:6441259-6441278 | Msa0907690:intron | 20.0% |
| !!! | TTTTGTCATTGTAATGTTTA+CGG | - | chr6_2:6441290-6441309 | Msa0907690:intron | 20.0% |
| !! | TATTGATCAATTAAAATTCC+AGG | - | chr6_2:6442179-6442198 | Msa0907690:CDS | 20.0% |
| !! | ATTGATCAATTAAAATTCCA+GGG | - | chr6_2:6442180-6442199 | Msa0907690:CDS | 20.0% |
| !! | AATCAAAATAAACGAATTCA+AGG | + | chr6_2:6442335-6442354 | None:intergenic | 20.0% |
| !! | AAACATATGTTATAAGAGAA+AGG | + | chr6_2:6442386-6442405 | None:intergenic | 20.0% |
| !! | ACAAACTTATTAACATATCT+TGG | + | chr6_2:6442491-6442510 | None:intergenic | 20.0% |
| !!! | TACTTGTTATTATTGAAAGT+AGG | - | chr6_2:6442617-6442636 | Msa0907690:intron | 20.0% |
| !!! | ACTTGTTATTATTGAAAGTA+GGG | - | chr6_2:6442618-6442637 | Msa0907690:intron | 20.0% |
| !! | ATTAAAATTAGATACTGTCT+GGG | - | chr6_2:6442924-6442943 | Msa0907690:intron | 20.0% |
| !! | TAATGTTAGGTTTAAGTATA+TGG | + | chr6_2:6444695-6444714 | None:intergenic | 20.0% |
| !! | ATTTAATGAATATGAAAGTG+TGG | + | chr6_2:6444861-6444880 | None:intergenic | 20.0% |
| !!! | ATGTAATCTTTTCTCTTTAA+TGG | + | chr6_2:6444937-6444956 | None:intergenic | 20.0% |
| !!! | ACAATGAAATAGTCTTTTAA+GGG | - | chr6_2:6445461-6445480 | Msa0907690:intron | 20.0% |
| !! | TAATAGTAAGAATTGTTACT+TGG | + | chr6_2:6445755-6445774 | None:intergenic | 20.0% |
| !! | AATTTCATTCTTTACATTGT+AGG | + | chr6_2:6446170-6446189 | None:intergenic | 20.0% |
| !! | GATGAAAAAGTGAAGATTTT+TGG | + | chr6_2:6439598-6439617 | None:intergenic | 25.0% |
| ! | TTTCATCATTCACATTTACA+AGG | - | chr6_2:6439611-6439630 | Msa0907690:three_prime_UTR | 25.0% |
| ! | AATAACAAAAGGGTCAAAAA+GGG | + | chr6_2:6439679-6439698 | None:intergenic | 25.0% |
| ! | TAATAACAAAAGGGTCAAAA+AGG | + | chr6_2:6439680-6439699 | None:intergenic | 25.0% |
| !!! | ATAATCTCAGATTTGTTGTA+TGG | - | chr6_2:6439767-6439786 | Msa0907690:three_prime_UTR | 25.0% |
| ! | TGGTTTATACTTGAACATTA+TGG | + | chr6_2:6440028-6440047 | None:intergenic | 25.0% |
| ! | TATGCTTGATAAATTGACTA+AGG | + | chr6_2:6440453-6440472 | None:intergenic | 25.0% |
| ! | GACATATATCATATAAGGTT+TGG | - | chr6_2:6440874-6440893 | Msa0907690:intron | 25.0% |
| ! | TATATCATATAAGGTTTGGA+AGG | - | chr6_2:6440878-6440897 | Msa0907690:intron | 25.0% |
| ! | TATATAAGATAAGGTTCAGA+TGG | - | chr6_2:6441068-6441087 | Msa0907690:intron | 25.0% |
| !! | TGGTTACTTTCTTTGTATTA+TGG | - | chr6_2:6441088-6441107 | Msa0907690:intron | 25.0% |
| ! | CTTTCTTTGTATTATGGTTA+TGG | - | chr6_2:6441094-6441113 | Msa0907690:intron | 25.0% |
| ! | TACAATAGTTAGGATCAATT+TGG | + | chr6_2:6441148-6441167 | None:intergenic | 25.0% |
| !! | TTATTCTCTTTTCTTTTCAG+TGG | - | chr6_2:6441236-6441255 | Msa0907690:intron | 25.0% |
| !!! | AAAATGTTTTTTCTGGTTTC+AGG | - | chr6_2:6441266-6441285 | Msa0907690:intron | 25.0% |
| !! | TCTATCTTTTGTCAGAATTA+AGG | - | chr6_2:6441593-6441612 | Msa0907690:intron | 25.0% |
| ! | GAAAACCTAATGTTGTTAAA+AGG | - | chr6_2:6441688-6441707 | Msa0907690:intron | 25.0% |
| !! | TTTTGTCTGAATAAGTTAAC+TGG | + | chr6_2:6441818-6441837 | None:intergenic | 25.0% |
| !!! | TTCTAACTGTAGTTTTACAA+TGG | - | chr6_2:6442697-6442716 | Msa0907690:intron | 25.0% |
| ! | AGAAAGATATGTTCTGATAT+AGG | + | chr6_2:6442788-6442807 | None:intergenic | 25.0% |
| ! | CATTAAAATTAGATACTGTC+TGG | - | chr6_2:6442923-6442942 | Msa0907690:intron | 25.0% |
| ! | AAGAATTATCGTACATGAAT+CGG | - | chr6_2:6442955-6442974 | Msa0907690:intron | 25.0% |
| ! | TTTCAAATTTGTCAAAGTAC+CGG | + | chr6_2:6443000-6443019 | None:intergenic | 25.0% |
| !!! | TATTGTTCTATTTTGAATGC+AGG | - | chr6_2:6443087-6443106 | Msa0907690:intron | 25.0% |
| !!! | TAAAAACAATTTTAACACCC+TGG | + | chr6_2:6443386-6443405 | None:intergenic | 25.0% |
| !!! | AATTGTTTTTAAAGTTGGCT+TGG | - | chr6_2:6443395-6443414 | Msa0907690:intron | 25.0% |
| ! | AAAAAGATTGAGAAGGAATA+GGG | + | chr6_2:6443898-6443917 | None:intergenic | 25.0% |
| ! | TAAAAAGATTGAGAAGGAAT+AGG | + | chr6_2:6443899-6443918 | None:intergenic | 25.0% |
| ! | ATACGTGTATAGAAAGTAAT+AGG | - | chr6_2:6443970-6443989 | Msa0907690:CDS | 25.0% |
| ! | TAGTGTGATTATCAATCTAA+CGG | + | chr6_2:6444459-6444478 | None:intergenic | 25.0% |
| ! | GAAAAATAATCAAGTGCATA+TGG | + | chr6_2:6444496-6444515 | None:intergenic | 25.0% |
| ! | GAAAAATTAATTCCCAGATT+TGG | - | chr6_2:6444748-6444767 | Msa0907690:intron | 25.0% |
| !! | TTTAAGTTAATGCCAAATCT+GGG | + | chr6_2:6444763-6444782 | None:intergenic | 25.0% |
| !!! | TTTTAAGTTAATGCCAAATC+TGG | + | chr6_2:6444764-6444783 | None:intergenic | 25.0% |
| ! | GGCATTAACTTAAAAAAGAA+TGG | - | chr6_2:6444769-6444788 | Msa0907690:intron | 25.0% |
| ! | TGTGGATCTTACTATTTAAT+GGG | + | chr6_2:6444843-6444862 | None:intergenic | 25.0% |
| ! | AAGTGTGATTTATTCTTCAT+TGG | + | chr6_2:6444908-6444927 | None:intergenic | 25.0% |
| ! | CTTAAAAGACTATTTCATTG+TGG | + | chr6_2:6445462-6445481 | None:intergenic | 25.0% |
| !! | CACAATGAAATAGTCTTTTA+AGG | - | chr6_2:6445460-6445479 | Msa0907690:intron | 25.0% |
| !!! | TTTGTTTTCCTTATCAGATA+AGG | - | chr6_2:6445786-6445805 | Msa0907690:intron | 25.0% |
| !! | TGCTTTACTAATAGTTTTTC+AGG | + | chr6_2:6445955-6445974 | None:intergenic | 25.0% |
| ! | GTCACATATAAAGAATCTAA+GGG | + | chr6_2:6446011-6446030 | None:intergenic | 25.0% |
| ! | TGTATATCTAAAGACTGATA+TGG | - | chr6_2:6446114-6446133 | Msa0907690:five_prime_UTR | 25.0% |
| ! | GTATATCTAAAGACTGATAT+GGG | - | chr6_2:6446115-6446134 | Msa0907690:five_prime_UTR | 25.0% |
| !! | AAGTGAAGATTTTTGGATGT+GGG | + | chr6_2:6439591-6439610 | None:intergenic | 30.0% |
| !! | AAAGTGAAGATTTTTGGATG+TGG | + | chr6_2:6439592-6439611 | None:intergenic | 30.0% |
| !! | AGACTTTGTTGTTGTATTAC+CGG | + | chr6_2:6439965-6439984 | None:intergenic | 30.0% |
| ! | AAAGTCTTATCCTAGTAAGT+GGG | - | chr6_2:6439978-6439997 | Msa0907690:intron | 30.0% |
| !! | TCACAATACAAAGGTTTTAG+AGG | + | chr6_2:6440342-6440361 | None:intergenic | 30.0% |
| CACCTGTAGATTATGTAATA+AGG | - | chr6_2:6440619-6440638 | Msa0907690:intron | 30.0% | |
| CTCCTTATTACATAATCTAC+AGG | + | chr6_2:6440624-6440643 | None:intergenic | 30.0% | |
| ! | AGGTTACTTTCTTTGTGTTA+TGG | - | chr6_2:6440898-6440917 | Msa0907690:intron | 30.0% |
| CTTTCTTTGTGTTATGGTTA+TGG | - | chr6_2:6440904-6440923 | Msa0907690:intron | 30.0% | |
| CTACAAAATGAAATTGGCTA+AGG | + | chr6_2:6441029-6441048 | None:intergenic | 30.0% | |
| ACTGCAGTTATACAATAGTT+AGG | + | chr6_2:6441158-6441177 | None:intergenic | 30.0% | |
| !!! | GGTTTTAGAATGCTAATTTG+TGG | - | chr6_2:6441338-6441357 | Msa0907690:intron | 30.0% |
| !! | GCTAATTTGTGGTTTTTGAA+TGG | - | chr6_2:6441349-6441368 | Msa0907690:intron | 30.0% |
| ! | TAGGTTTGGGTTTATAAAAC+AGG | - | chr6_2:6441430-6441449 | Msa0907690:intron | 30.0% |
| ! | ATCTTTTGTCAGAATTAAGG+AGG | - | chr6_2:6441596-6441615 | Msa0907690:intron | 30.0% |
| ! | TCTTTTGTCAGAATTAAGGA+GGG | - | chr6_2:6441597-6441616 | Msa0907690:intron | 30.0% |
| ! | ATACGCCTTTTAACAACATT+AGG | + | chr6_2:6441696-6441715 | None:intergenic | 30.0% |
| ! | ATGTTGTTAAAAGGCGTATA+AGG | - | chr6_2:6441697-6441716 | Msa0907690:intron | 30.0% |
| AAGGAATTCCTGATTGTTTA+AGG | - | chr6_2:6441721-6441740 | Msa0907690:intron | 30.0% | |
| AGGAATTCCTGATTGTTTAA+GGG | - | chr6_2:6441722-6441741 | Msa0907690:intron | 30.0% | |
| ATAATGCTAATTGCAGCAAT+TGG | - | chr6_2:6441932-6441951 | Msa0907690:intron | 30.0% | |
| ATATAATTCGAGACATTTCC+CGG | - | chr6_2:6441985-6442004 | Msa0907690:intron | 30.0% | |
| !!! | AGCTTTTAGAACATTGTAGA+GGG | + | chr6_2:6442063-6442082 | None:intergenic | 30.0% |
| !!! | AAGCTTTTAGAACATTGTAG+AGG | + | chr6_2:6442064-6442083 | None:intergenic | 30.0% |
| TAACAAGCAGAAAAAAGTGA+CGG | + | chr6_2:6442137-6442156 | None:intergenic | 30.0% | |
| TCAATTAAAATTCCAGGGAA+TGG | - | chr6_2:6442185-6442204 | Msa0907690:CDS | 30.0% | |
| CAATTAAAATTCCAGGGAAT+GGG | - | chr6_2:6442186-6442205 | Msa0907690:CDS | 30.0% | |
| AATTAAAATTCCAGGGAATG+GGG | - | chr6_2:6442187-6442206 | Msa0907690:CDS | 30.0% | |
| ! | TTATTGGTGGCATTACTTAA+AGG | - | chr6_2:6442261-6442280 | Msa0907690:intron | 30.0% |
| ! | GTTTTCTACGAGTAAAGATT+TGG | - | chr6_2:6442402-6442421 | Msa0907690:intron | 30.0% |
| TAATTGAAACTGCAGTCAAT+TGG | + | chr6_2:6442738-6442757 | None:intergenic | 30.0% | |
| AGATATGTTCTGATATAGGT+GGG | + | chr6_2:6442784-6442803 | None:intergenic | 30.0% | |
| AAGATATGTTCTGATATAGG+TGG | + | chr6_2:6442785-6442804 | None:intergenic | 30.0% | |
| GTAAAATGTTCTCCTAACTT+CGG | + | chr6_2:6443175-6443194 | None:intergenic | 30.0% | |
| GCTAGGATTTATCATTTCTT+CGG | + | chr6_2:6443197-6443216 | None:intergenic | 30.0% | |
| AAAATACAGTTATGAACCAC+TGG | + | chr6_2:6443231-6443250 | None:intergenic | 30.0% | |
| !! | TACTTTTTGTACGCTACAAA+TGG | + | chr6_2:6443333-6443352 | None:intergenic | 30.0% |
| AATGACATTCTTAACTTTCC+AGG | - | chr6_2:6443365-6443384 | Msa0907690:intron | 30.0% | |
| ATGACATTCTTAACTTTCCA+GGG | - | chr6_2:6443366-6443385 | Msa0907690:intron | 30.0% | |
| ATCATGGCAGTACTTTAATA+GGG | + | chr6_2:6443421-6443440 | None:intergenic | 30.0% | |
| CTTTGATGTTGACAAACAAA+AGG | + | chr6_2:6443668-6443687 | None:intergenic | 30.0% | |
| GATTACCTTTGAACTCTTAT+TGG | - | chr6_2:6443713-6443732 | Msa0907690:CDS | 30.0% | |
| ATCAACCAATAAGAGTTCAA+AGG | + | chr6_2:6443721-6443740 | None:intergenic | 30.0% | |
| !! | TATTGGTTGATTTGTTTGCT+CGG | - | chr6_2:6443730-6443749 | Msa0907690:CDS | 30.0% |
| ATACGGTAAAAAGATTGAGA+AGG | + | chr6_2:6443905-6443924 | None:intergenic | 30.0% | |
| TTTACCGTATCAGTTATCAA+AGG | - | chr6_2:6443915-6443934 | Msa0907690:intron | 30.0% | |
| TTACCGTATCAGTTATCAAA+GGG | - | chr6_2:6443916-6443935 | Msa0907690:intron | 30.0% | |
| ! | TAACCCTTTGATAACTGATA+CGG | + | chr6_2:6443922-6443941 | None:intergenic | 30.0% |
| TTTCTTCTATATACAGTCCT+AGG | + | chr6_2:6444021-6444040 | None:intergenic | 30.0% | |
| TAAATGTTGTCCCAATAATC+AGG | - | chr6_2:6444047-6444066 | Msa0907690:CDS | 30.0% | |
| CCAATAAGTTCCTGATTATT+GGG | + | chr6_2:6444060-6444079 | None:intergenic | 30.0% | |
| ACCAATAAGTTCCTGATTAT+TGG | + | chr6_2:6444061-6444080 | None:intergenic | 30.0% | |
| ! | CATCTGCAATCTTAATTTTG+CGG | - | chr6_2:6444181-6444200 | Msa0907690:intron | 30.0% |
| TTCTTCATATTATCAAGTGC+AGG | + | chr6_2:6444210-6444229 | None:intergenic | 30.0% | |
| !! | CATGAGTGGATTATCAATTA+TGG | + | chr6_2:6444269-6444288 | None:intergenic | 30.0% |
| !! | AGTTGAATGAGACTACTTTT+CGG | - | chr6_2:6444343-6444362 | Msa0907690:CDS | 30.0% |
| CACTATAACAACACAATTCA+AGG | - | chr6_2:6444627-6444646 | Msa0907690:intron | 30.0% | |
| ATGGTGAGAAGGAAAAAAAA+TGG | + | chr6_2:6444676-6444695 | None:intergenic | 30.0% | |
| GTTGAATGTACTGTAATGTT+AGG | + | chr6_2:6444708-6444727 | None:intergenic | 30.0% | |
| ! | TTGTCTAAAATCTTCTCTCA+TGG | + | chr6_2:6444820-6444839 | None:intergenic | 30.0% |
| GTGTGGATCTTACTATTTAA+TGG | + | chr6_2:6444844-6444863 | None:intergenic | 30.0% | |
| ATTATCATGAGTTGTGTTCT+TGG | + | chr6_2:6444984-6445003 | None:intergenic | 30.0% | |
| CATAGACATTCATAATCCAA+CGG | - | chr6_2:6445290-6445309 | Msa0907690:intron | 30.0% | |
| ACTAAAACATCAAACTCTAC+AGG | + | chr6_2:6445407-6445426 | None:intergenic | 30.0% | |
| TGTAAAGCAGAAATATTCTG+TGG | - | chr6_2:6445540-6445559 | Msa0907690:intron | 30.0% | |
| CTTCGTATTGCATTTGATAT+GGG | + | chr6_2:6445709-6445728 | None:intergenic | 30.0% | |
| CATATCAAATGCAATACGAA+GGG | - | chr6_2:6445708-6445727 | Msa0907690:intron | 30.0% | |
| AAACTCTTCCTTATCTGATA+AGG | + | chr6_2:6445797-6445816 | None:intergenic | 30.0% | |
| TGTTATACTCTTGCTTCAAT+TGG | + | chr6_2:6445912-6445931 | None:intergenic | 30.0% | |
| CATATAAAGAATCTAAGGGT+AGG | + | chr6_2:6446007-6446026 | None:intergenic | 30.0% | |
| GGTCACATATAAAGAATCTA+AGG | + | chr6_2:6446012-6446031 | None:intergenic | 30.0% | |
| TATAACTGTACAGAGAATGT+GGG | + | chr6_2:6446033-6446052 | None:intergenic | 30.0% | |
| ATATAACTGTACAGAGAATG+TGG | + | chr6_2:6446034-6446053 | None:intergenic | 30.0% | |
| TATCATCTACTTGTGTTCTT+AGG | - | chr6_2:6446070-6446089 | Msa0907690:intron | 30.0% | |
| ! | CAAAATATTTTCACTCACTG+AGG | + | chr6_2:6446096-6446115 | None:intergenic | 30.0% |
| ATGGAAGAAAGAAGAAACGA+TGG | + | chr6_2:6439523-6439542 | None:intergenic | 35.0% | |
| TTTGGAAAAACCTCGGAAAT+TGG | + | chr6_2:6439563-6439582 | None:intergenic | 35.0% | |
| !! | AGTAGCTAGTTTGTTACTGT+TGG | - | chr6_2:6439869-6439888 | Msa0907690:CDS | 35.0% |
| ! | CAAAGTCTTATCCTAGTAAG+TGG | - | chr6_2:6439977-6439996 | Msa0907690:intron | 35.0% |
| ! | AAGTCTTATCCTAGTAAGTG+GGG | - | chr6_2:6439979-6439998 | Msa0907690:intron | 35.0% |
| ! | GTGCTGATGATCAAACATTA+TGG | + | chr6_2:6440048-6440067 | None:intergenic | 35.0% |
| TAATGTTTGATCATCAGCAC+TGG | - | chr6_2:6440048-6440067 | Msa0907690:intron | 35.0% | |
| ! | ATATCCTTCAGTTTGAAGCA+TGG | - | chr6_2:6440137-6440156 | Msa0907690:intron | 35.0% |
| ! | TGGACCGCAATTTAAAACTA+TGG | - | chr6_2:6440377-6440396 | Msa0907690:intron | 35.0% |
| ! | GGACCGCAATTTAAAACTAT+GGG | - | chr6_2:6440378-6440397 | Msa0907690:intron | 35.0% |
| !!! | CCACCCATAGTTTTAAATTG+CGG | + | chr6_2:6440384-6440403 | None:intergenic | 35.0% |
| TATCAAGCATAACAGAGATG+AGG | - | chr6_2:6440462-6440481 | Msa0907690:intron | 35.0% | |
| ATGACAACATTAGAGAGAGT+TGG | - | chr6_2:6440531-6440550 | Msa0907690:intron | 35.0% | |
| TGACAACATTAGAGAGAGTT+GGG | - | chr6_2:6440532-6440551 | Msa0907690:intron | 35.0% | |
| AAACTAGGTTTAGGTGGTTT+GGG | - | chr6_2:6440583-6440602 | Msa0907690:intron | 35.0% | |
| ! | TGGTATACGATAGAGCATTA+TGG | - | chr6_2:6440748-6440767 | Msa0907690:intron | 35.0% |
| ! | AAGCCTTATCCCACTAAATA+GGG | + | chr6_2:6440797-6440816 | None:intergenic | 35.0% |
| ! | TAAGCCTTATCCCACTAAAT+AGG | + | chr6_2:6440798-6440817 | None:intergenic | 35.0% |
| CGGCAAAATGAAATTGACTA+AGG | + | chr6_2:6440842-6440861 | None:intergenic | 35.0% | |
| !! | TGCTTTTGTAGCTTGTGAAT+TGG | - | chr6_2:6440994-6441013 | Msa0907690:intron | 35.0% |
| TTATGGTTATGGCATAACAC+AGG | - | chr6_2:6441105-6441124 | Msa0907690:intron | 35.0% | |
| TATGGTTATGGCATAACACA+GGG | - | chr6_2:6441106-6441125 | Msa0907690:intron | 35.0% | |
| TGTCATTGTAATGTTTACGG+AGG | - | chr6_2:6441293-6441312 | Msa0907690:intron | 35.0% | |
| !! | TTCTAAAACCAGAACACCAA+TGG | + | chr6_2:6441328-6441347 | None:intergenic | 35.0% |
| ! | CTTTTGTCAGAATTAAGGAG+GGG | - | chr6_2:6441598-6441617 | Msa0907690:intron | 35.0% |
| AGAAAATGGAGGAAGATGAT+TGG | - | chr6_2:6441630-6441649 | Msa0907690:intron | 35.0% | |
| GAAAATGGAGGAAGATGATT+GGG | - | chr6_2:6441631-6441650 | Msa0907690:intron | 35.0% | |
| AAAATGGAGGAAGATGATTG+GGG | - | chr6_2:6441632-6441651 | Msa0907690:intron | 35.0% | |
| ! | CAACATTAGGTTTTCTCCTT+AGG | + | chr6_2:6441683-6441702 | None:intergenic | 35.0% |
| ! | GTTAAAAGGCGTATAAGGAA+AGG | - | chr6_2:6441702-6441721 | Msa0907690:intron | 35.0% |
| GGAATTCCTGATTGTTTAAG+GGG | - | chr6_2:6441723-6441742 | Msa0907690:intron | 35.0% | |
| CAGATATTAACTGCCAAACA+AGG | + | chr6_2:6441749-6441768 | None:intergenic | 35.0% | |
| CTTGTTTGGCAGTTAATATC+TGG | - | chr6_2:6441747-6441766 | Msa0907690:intron | 35.0% | |
| TCGAATTATATCCAGTTCAG+AGG | + | chr6_2:6441976-6441995 | None:intergenic | 35.0% | |
| AACAAGCAGAAAAAAGTGAC+GGG | + | chr6_2:6442136-6442155 | None:intergenic | 35.0% | |
| TTTGCTTCTTTATATGAGCG+AGG | - | chr6_2:6442224-6442243 | Msa0907690:intron | 35.0% | |
| ! | ATTGCAAGTTTTTCACCACA+TGG | - | chr6_2:6442663-6442682 | Msa0907690:intron | 35.0% |
| GACTGCAGTTTCAATTACAA+TGG | - | chr6_2:6442741-6442760 | Msa0907690:intron | 35.0% | |
| ATATGTTCTGATATAGGTGG+GGG | + | chr6_2:6442782-6442801 | None:intergenic | 35.0% | |
| GATATGTTCTGATATAGGTG+GGG | + | chr6_2:6442783-6442802 | None:intergenic | 35.0% | |
| CTATAAACAGAACTGTCATC+TGG | + | chr6_2:6442883-6442902 | None:intergenic | 35.0% | |
| CAGATGACAGTTCTGTTTAT+AGG | - | chr6_2:6442881-6442900 | Msa0907690:intron | 35.0% | |
| ATGACAGTTCTGTTTATAGG+TGG | - | chr6_2:6442884-6442903 | Msa0907690:intron | 35.0% | |
| TATCAGATAGTGTCATACTC+CGG | - | chr6_2:6442978-6442997 | Msa0907690:intron | 35.0% | |
| GTATTCCTTTCCATTCCATT+TGG | - | chr6_2:6443252-6443271 | Msa0907690:intron | 35.0% | |
| CATCATGGCAGTACTTTAAT+AGG | + | chr6_2:6443422-6443441 | None:intergenic | 35.0% | |
| TGATACTTACCAAGTCATCA+TGG | + | chr6_2:6443437-6443456 | None:intergenic | 35.0% | |
| ! | TTGTTTTCTGCTTGCTTATC+AGG | - | chr6_2:6443504-6443523 | Msa0907690:CDS | 35.0% |
| GCATGTATCAGTTTCTCAAA+TGG | + | chr6_2:6443538-6443557 | None:intergenic | 35.0% | |
| !!! | ATCCTCAGGGAAGTTTTTTA+AGG | + | chr6_2:6443560-6443579 | None:intergenic | 35.0% |
| GTTGACAAACAAAAGGCAAA+TGG | + | chr6_2:6443661-6443680 | None:intergenic | 35.0% | |
| !! | AAGTTTTCGAGCCTTTTCAA+TGG | - | chr6_2:6443851-6443870 | Msa0907690:intron | 35.0% |
| CACTCATACTACCATTGAAA+AGG | + | chr6_2:6443865-6443884 | None:intergenic | 35.0% | |
| CAATCTGTGGACACAAATTA+AGG | - | chr6_2:6443945-6443964 | Msa0907690:CDS | 35.0% | |
| CCCAATAATCAGGAACTTAT+TGG | - | chr6_2:6444057-6444076 | Msa0907690:CDS | 35.0% | |
| !! | AAAAGTGTTGCAAGGATGAT+TGG | + | chr6_2:6444138-6444157 | None:intergenic | 35.0% |
| GAAAAAAGACTAGAGTCTCT+AGG | - | chr6_2:6444227-6444246 | Msa0907690:CDS | 35.0% | |
| TCTCTAGGCATATGATCAAT+AGG | - | chr6_2:6444242-6444261 | Msa0907690:CDS | 35.0% | |
| ! | TTGATAATCCACTCATGACT+AGG | - | chr6_2:6444272-6444291 | Msa0907690:CDS | 35.0% |
| CTTGAGGAATTTGTACATGA+CGG | - | chr6_2:6444304-6444323 | Msa0907690:CDS | 35.0% | |
| TTGAGGAATTTGTACATGAC+GGG | - | chr6_2:6444305-6444324 | Msa0907690:CDS | 35.0% | |
| AAAAAAAGAAGGTGATGCAC+CGG | + | chr6_2:6444405-6444424 | None:intergenic | 35.0% | |
| GGTTTAAGTATATGGTGAGA+AGG | + | chr6_2:6444687-6444706 | None:intergenic | 35.0% | |
| CAAGTCTTTCAACGATTCAA+GGG | - | chr6_2:6445026-6445045 | Msa0907690:intron | 35.0% | |
| ATCTGAACCAACAATAGTGT+GGG | + | chr6_2:6445067-6445086 | None:intergenic | 35.0% | |
| AATCTGAACCAACAATAGTG+TGG | + | chr6_2:6445068-6445087 | None:intergenic | 35.0% | |
| !! | TAATTGATGGTGCTACAACA+AGG | + | chr6_2:6445142-6445161 | None:intergenic | 35.0% |
| AGCACCATCAATTATGTTGT+TGG | - | chr6_2:6445148-6445167 | Msa0907690:intron | 35.0% | |
| GCAACCAACAACATAATTGA+TGG | + | chr6_2:6445155-6445174 | None:intergenic | 35.0% | |
| CGTTGGATTATGAATGTCTA+TGG | + | chr6_2:6445292-6445311 | None:intergenic | 35.0% | |
| ! | GAGGAAATTTTCTTAACCGT+TGG | + | chr6_2:6445309-6445328 | None:intergenic | 35.0% |
| !! | AATTTCCTCTAACTTGCTCA+CGG | - | chr6_2:6445320-6445339 | Msa0907690:intron | 35.0% |
| ACCTCTGATAAGGAAAAGTA+GGG | + | chr6_2:6445382-6445401 | None:intergenic | 35.0% | |
| AACCTCTGATAAGGAAAAGT+AGG | + | chr6_2:6445383-6445402 | None:intergenic | 35.0% | |
| AAATATTCTGTGGAACATGC+TGG | - | chr6_2:6445550-6445569 | Msa0907690:intron | 35.0% | |
| AATATTCTGTGGAACATGCT+GGG | - | chr6_2:6445551-6445570 | Msa0907690:intron | 35.0% | |
| CCTTCGTATTGCATTTGATA+TGG | + | chr6_2:6445710-6445729 | None:intergenic | 35.0% | |
| CCATATCAAATGCAATACGA+AGG | - | chr6_2:6445707-6445726 | Msa0907690:intron | 35.0% | |
| TCAGATAAGGAAGAGTTTAG+AGG | - | chr6_2:6445799-6445818 | Msa0907690:intron | 35.0% | |
| ! | CAAGAGTATGAGAAGAAGAA+CGG | - | chr6_2:6445830-6445849 | Msa0907690:intron | 35.0% |
| TAGGAAACAAGATGAACGAA+CGG | + | chr6_2:6446151-6446170 | None:intergenic | 35.0% | |
| TGTAGATACAGATAGTGTTG+AGG | - | chr6_2:6446222-6446241 | Msa0907690:five_prime_UTR | 35.0% | |
| ACCTTCATTTCCAATTTCCG+AGG | - | chr6_2:6439550-6439569 | Msa0907690:three_prime_UTR | 40.0% | |
| ACCTCGGAAATTGGAAATGA+AGG | + | chr6_2:6439554-6439573 | None:intergenic | 40.0% | |
| !! | AAGATTTTTGGATGTGGGTG+TGG | + | chr6_2:6439586-6439605 | None:intergenic | 40.0% |
| GAAACCATGCTTCAAACTGA+AGG | + | chr6_2:6440144-6440163 | None:intergenic | 40.0% | |
| AGTTACTCCGTAATTGAGAG+TGG | - | chr6_2:6440240-6440259 | Msa0907690:intron | 40.0% | |
| CAATTGCGGTCACAATACAA+AGG | + | chr6_2:6440351-6440370 | None:intergenic | 40.0% | |
| ! | CCGCAATTTAAAACTATGGG+TGG | - | chr6_2:6440381-6440400 | Msa0907690:intron | 40.0% |
| ! | GGTGTAAGTTTTGCTCCTAT+AGG | - | chr6_2:6440402-6440421 | Msa0907690:intron | 40.0% |
| GATGTGTGGTAAAACTAGAC+TGG | - | chr6_2:6440496-6440515 | Msa0907690:intron | 40.0% | |
| GACAACATTAGAGAGAGTTG+GGG | - | chr6_2:6440533-6440552 | Msa0907690:intron | 40.0% | |
| ACCTATAGCACAAAAGATGG+TGG | - | chr6_2:6440560-6440579 | Msa0907690:intron | 40.0% | |
| ! | TCCACCATCTTTTGTGCTAT+AGG | + | chr6_2:6440564-6440583 | None:intergenic | 40.0% |
| !! | CACAAAAGATGGTGGAAACT+AGG | - | chr6_2:6440568-6440587 | Msa0907690:intron | 40.0% |
| !! | AGATGGTGGAAACTAGGTTT+AGG | - | chr6_2:6440574-6440593 | Msa0907690:intron | 40.0% |
| GAAACTAGGTTTAGGTGGTT+TGG | - | chr6_2:6440582-6440601 | Msa0907690:intron | 40.0% | |
| AAGGAGAGTAGATCAGATGA+AGG | - | chr6_2:6440638-6440657 | Msa0907690:intron | 40.0% | |
| AGGAGAGTAGATCAGATGAA+GGG | - | chr6_2:6440639-6440658 | Msa0907690:intron | 40.0% | |
| AAGGGTAGTCAAATCACTAG+AGG | - | chr6_2:6440657-6440676 | Msa0907690:intron | 40.0% | |
| CTTATCCCACTAAATAGGGT+CGG | + | chr6_2:6440793-6440812 | None:intergenic | 40.0% | |
| TTGTGTTATGGTTATGGCAC+AGG | - | chr6_2:6440910-6440929 | Msa0907690:intron | 40.0% | |
| TTATGGTTATGGCACAGGAA+AGG | - | chr6_2:6440915-6440934 | Msa0907690:intron | 40.0% | |
| TATGGTTATGGCACAGGAAA+GGG | - | chr6_2:6440916-6440935 | Msa0907690:intron | 40.0% | |
| ! | TGGACTTGGTTCATAGTCAT+CGG | + | chr6_2:6441387-6441406 | None:intergenic | 40.0% |
| CAGAGAAACACATAATGAGC+AGG | + | chr6_2:6441530-6441549 | None:intergenic | 40.0% | |
| CTGACAAAAGATAGACGACA+AGG | + | chr6_2:6441588-6441607 | None:intergenic | 40.0% | |
| !! | GTGATTGGAAGCATTACCTA+AGG | - | chr6_2:6441664-6441683 | Msa0907690:intron | 40.0% |
| !! | ATTGTTTAAGGGGCCTTGTT+TGG | - | chr6_2:6441733-6441752 | Msa0907690:intron | 40.0% |
| GATTCATGAGCAATAGGTCT+CGG | + | chr6_2:6441776-6441795 | None:intergenic | 40.0% | |
| TCAATGCAAACCGACAAATG+TGG | + | chr6_2:6441908-6441927 | None:intergenic | 40.0% | |
| ATACATGTGAAGGGAAAGTC+CGG | + | chr6_2:6442007-6442026 | None:intergenic | 40.0% | |
| GCTGGAAGAATACATGTGAA+GGG | + | chr6_2:6442016-6442035 | None:intergenic | 40.0% | |
| TGCTGGAAGAATACATGTGA+AGG | + | chr6_2:6442017-6442036 | None:intergenic | 40.0% | |
| GTATTCTTCCAGCAAAGACA+TGG | - | chr6_2:6442023-6442042 | Msa0907690:intron | 40.0% | |
| TCAGTATTTGACAGAGACGT+AGG | - | chr6_2:6442086-6442105 | Msa0907690:intron | 40.0% | |
| !!! | GGAGGATGCATTTTGGTTAT+TGG | - | chr6_2:6442245-6442264 | Msa0907690:intron | 40.0% |
| !!! | GGATGCATTTTGGTTATTGG+TGG | - | chr6_2:6442248-6442267 | Msa0907690:intron | 40.0% |
| AGAAGCTTCATGTTACCATG+TGG | + | chr6_2:6442681-6442700 | None:intergenic | 40.0% | |
| TCAATTGGACTTGGAACATG+CGG | + | chr6_2:6442723-6442742 | None:intergenic | 40.0% | |
| AAACTGCAGTCAATTGGACT+TGG | + | chr6_2:6442732-6442751 | None:intergenic | 40.0% | |
| ACAGAACTGTCATCTGGATA+CGG | + | chr6_2:6442877-6442896 | None:intergenic | 40.0% | |
| !! | GTTCTATTTTGAATGCAGGC+AGG | - | chr6_2:6443091-6443110 | Msa0907690:intron | 40.0% |
| CCAAGCGTTCAAATTGAAAG+AGG | + | chr6_2:6443138-6443157 | None:intergenic | 40.0% | |
| CCTCTTTCAATTTGAACGCT+TGG | - | chr6_2:6443135-6443154 | Msa0907690:intron | 40.0% | |
| ! | TTCAATTTGAACGCTTGGTG+AGG | - | chr6_2:6443140-6443159 | Msa0907690:intron | 40.0% |
| ! | TCAATTTGAACGCTTGGTGA+GGG | - | chr6_2:6443141-6443160 | Msa0907690:intron | 40.0% |
| AAGAGCCAAATGGAATGGAA+AGG | + | chr6_2:6443260-6443279 | None:intergenic | 40.0% | |
| ATTCGAAGAGCCAAATGGAA+TGG | + | chr6_2:6443265-6443284 | None:intergenic | 40.0% | |
| AATGGAACTTGGAGAAACTG+TGG | + | chr6_2:6443315-6443334 | None:intergenic | 40.0% | |
| TGTACGCTACAAATGGAACT+TGG | + | chr6_2:6443326-6443345 | None:intergenic | 40.0% | |
| !! | AAAGTACTGCCATGATGACT+TGG | - | chr6_2:6443425-6443444 | Msa0907690:CDS | 40.0% |
| TGCCTTAAAAAACTTCCCTG+AGG | - | chr6_2:6443555-6443574 | Msa0907690:intron | 40.0% | |
| ! | ATAAGTTGAAACGCAGAGGA+AGG | + | chr6_2:6443636-6443655 | None:intergenic | 40.0% |
| ! | GGAAATAAGTTGAAACGCAG+AGG | + | chr6_2:6443640-6443659 | None:intergenic | 40.0% |
| CAAAGGGTTATGTCAATCTG+TGG | - | chr6_2:6443932-6443951 | Msa0907690:CDS | 40.0% | |
| GAGATTGCAGTCTATCATCA+CGG | - | chr6_2:6444082-6444101 | Msa0907690:CDS | 40.0% | |
| ATTCTCTTTCAGCCATTCCT+GGG | + | chr6_2:6444161-6444180 | None:intergenic | 40.0% | |
| TTTCATCTGTCTTCACTCAG+TGG | - | chr6_2:6444512-6444531 | Msa0907690:intron | 40.0% | |
| TTCATCTGTCTTCACTCAGT+GGG | - | chr6_2:6444513-6444532 | Msa0907690:intron | 40.0% | |
| TTCAAGAAGACGAGTGAACA+GGG | + | chr6_2:6444584-6444603 | None:intergenic | 40.0% | |
| TTTCAAGAAGACGAGTGAAC+AGG | + | chr6_2:6444585-6444604 | None:intergenic | 40.0% | |
| GCAAGTCTTTCAACGATTCA+AGG | - | chr6_2:6445025-6445044 | Msa0907690:intron | 40.0% | |
| TCTTCTTCCCACACTATTGT+TGG | - | chr6_2:6445057-6445076 | Msa0907690:intron | 40.0% | |
| ! | TGTTGTTGGTTGCTGTAGAT+CGG | - | chr6_2:6445162-6445181 | Msa0907690:intron | 40.0% |
| AATAACACGCAAGAGTTGAC+AGG | - | chr6_2:6445204-6445223 | Msa0907690:intron | 40.0% | |
| TCTACAGGAAACCTCTGATA+AGG | + | chr6_2:6445392-6445411 | None:intergenic | 40.0% | |
| ! | TGGCTTTTCAGAAAGTTCTC+CGG | + | chr6_2:6445870-6445889 | None:intergenic | 40.0% |
| TACTCTTGCTTCAATTGGTC+TGG | + | chr6_2:6445907-6445926 | None:intergenic | 40.0% | |
| GGAAATGAAGGTTCGATCGA+TGG | + | chr6_2:6439542-6439561 | None:intergenic | 45.0% | |
| ! | GGTGTGGTTTGGAAAAACCT+CGG | + | chr6_2:6439570-6439589 | None:intergenic | 45.0% |
| ! | TTTTGGATGTGGGTGTGGTT+TGG | + | chr6_2:6439581-6439600 | None:intergenic | 45.0% |
| CTTATCCTAGTAAGTGGGGT+TGG | - | chr6_2:6439983-6440002 | Msa0907690:intron | 45.0% | |
| TACTCCGTAATTGAGAGTGG+TGG | - | chr6_2:6440243-6440262 | Msa0907690:intron | 45.0% | |
| CTTGCCACCACTCTCAATTA+CGG | + | chr6_2:6440250-6440269 | None:intergenic | 45.0% | |
| AACATTAGAGAGAGTTGGGG+TGG | - | chr6_2:6440536-6440555 | Msa0907690:intron | 45.0% | |
| GGCACCTATAGCACAAAAGA+TGG | - | chr6_2:6440557-6440576 | Msa0907690:intron | 45.0% | |
| TGGTGGAAACTAGGTTTAGG+TGG | - | chr6_2:6440577-6440596 | Msa0907690:intron | 45.0% | |
| ACTAAATAGGGTCGGCTACA+TGG | + | chr6_2:6440785-6440804 | None:intergenic | 45.0% | |
| ATGTAGCCGACCCTATTTAG+TGG | - | chr6_2:6440784-6440803 | Msa0907690:intron | 45.0% | |
| TGTAGCCGACCCTATTTAGT+GGG | - | chr6_2:6440785-6440804 | Msa0907690:intron | 45.0% | |
| CGACCCTATTTAGTGGGATA+AGG | - | chr6_2:6440791-6440810 | Msa0907690:intron | 45.0% | |
| ! | AAGCTATGCCATTGGTGTTC+TGG | - | chr6_2:6441317-6441336 | Msa0907690:intron | 45.0% |
| !! | CAAGAGCGTTGGATAGGTTT+GGG | - | chr6_2:6441417-6441436 | Msa0907690:intron | 45.0% |
| ACAGGATGCTAACACTTCTG+AGG | - | chr6_2:6441448-6441467 | Msa0907690:intron | 45.0% | |
| CAGGATGCTAACACTTCTGA+GGG | - | chr6_2:6441449-6441468 | Msa0907690:intron | 45.0% | |
| TCAGAATTAAGGAGGGGAGA+AGG | - | chr6_2:6441604-6441623 | Msa0907690:intron | 45.0% | |
| CAGAATTAAGGAGGGGAGAA+GGG | - | chr6_2:6441605-6441624 | Msa0907690:intron | 45.0% | |
| AGGGGAGAAGGGTTAGAAAA+TGG | - | chr6_2:6441616-6441635 | Msa0907690:intron | 45.0% | |
| GGAGAAGGGTTAGAAAATGG+AGG | - | chr6_2:6441619-6441638 | Msa0907690:intron | 45.0% | |
| ACAAGGCCCCTTAAACAATC+AGG | + | chr6_2:6441732-6441751 | None:intergenic | 45.0% | |
| GACCTATTGCTCATGAATCC+TGG | - | chr6_2:6441777-6441796 | Msa0907690:intron | 45.0% | |
| CTCCAGGATTCATGAGCAAT+AGG | + | chr6_2:6441782-6441801 | None:intergenic | 45.0% | |
| CATGAATCCTGGAGTTTACG+AGG | - | chr6_2:6441788-6441807 | Msa0907690:intron | 45.0% | |
| TGGATTACCTCGTAAACTCC+AGG | + | chr6_2:6441798-6441817 | None:intergenic | 45.0% | |
| CGCAACTGTTCCACATTTGT+CGG | - | chr6_2:6441895-6441914 | Msa0907690:intron | 45.0% | |
| TACATGTGAAGGGAAAGTCC+GGG | + | chr6_2:6442006-6442025 | None:intergenic | 45.0% | |
| CAGAGACGTAGGATATGTTC+AGG | - | chr6_2:6442097-6442116 | Msa0907690:intron | 45.0% | |
| GCTTCTTTATATGAGCGAGG+AGG | - | chr6_2:6442227-6442246 | Msa0907690:intron | 45.0% | |
| !! | AAGAGGTATTGCTGTACGAG+AGG | + | chr6_2:6443121-6443140 | None:intergenic | 45.0% |
| !! | TCCATTTGGCTCTTCGAATC+TGG | - | chr6_2:6443266-6443285 | Msa0907690:intron | 45.0% |
| !! | CCATTTGGCTCTTCGAATCT+GGG | - | chr6_2:6443267-6443286 | Msa0907690:intron | 45.0% |
| CTGGGATGTCTTTCTCTATG+AGG | - | chr6_2:6443285-6443304 | Msa0907690:intron | 45.0% | |
| CAGGATTCATTGCATCCTCA+GGG | + | chr6_2:6443573-6443592 | None:intergenic | 45.0% | |
| TCAGGATTCATTGCATCCTC+AGG | + | chr6_2:6443574-6443593 | None:intergenic | 45.0% | |
| ACCTTGATGGAATAAGCCAG+CGG | + | chr6_2:6443607-6443626 | None:intergenic | 45.0% | |
| AGGAAGGAAGAGAACCTTGA+TGG | + | chr6_2:6443620-6443639 | None:intergenic | 45.0% | |
| ! | AAGGATGATTGGTTGTGCGA+AGG | + | chr6_2:6444127-6444146 | None:intergenic | 45.0% |
| ! | ATCCTTGCAACACTTTTCCC+AGG | - | chr6_2:6444141-6444160 | Msa0907690:intron | 45.0% |
| !! | TTCCTGGGAAAAGTGTTGCA+AGG | + | chr6_2:6444146-6444165 | None:intergenic | 45.0% |
| ! | TGCAACACTTTTCCCAGGAA+TGG | - | chr6_2:6444146-6444165 | Msa0907690:intron | 45.0% |
| GATTCTCTTTCAGCCATTCC+TGG | + | chr6_2:6444162-6444181 | None:intergenic | 45.0% | |
| GTGTCAATCCTAGTCATGAG+TGG | + | chr6_2:6444283-6444302 | None:intergenic | 45.0% | |
| GACTAGGATTGACACTCTTG+AGG | - | chr6_2:6444288-6444307 | Msa0907690:CDS | 45.0% | |
| !! | CTACTTTTCGGCTCTGTCTA+TGG | - | chr6_2:6444355-6444374 | Msa0907690:exon | 45.0% |
| ! | TTTTCGGCTCTGTCTATGGT+GGG | - | chr6_2:6444359-6444378 | Msa0907690:exon | 45.0% |
| ! | CTATGGTGGGAGACCTTAAT+AGG | - | chr6_2:6444372-6444391 | Msa0907690:five_prime_UTR | 45.0% |
| GACCTTAATAGGTCTCCTAC+CGG | - | chr6_2:6444383-6444402 | Msa0907690:five_prime_UTR | 45.0% | |
| !! | TTCACTCAGTGGGTTACATG+AGG | - | chr6_2:6444523-6444542 | Msa0907690:intron | 45.0% |
| ! | GAGGTACCAGAAGGTCTTAA+CGG | + | chr6_2:6444555-6444574 | None:intergenic | 45.0% |
| TAAGACCTTCTGGTACCTCT+CGG | - | chr6_2:6444556-6444575 | Msa0907690:intron | 45.0% | |
| CAACAAGGAACACGGTAGAA+TGG | + | chr6_2:6445127-6445146 | None:intergenic | 45.0% | |
| !! | TGGTGCTACAACAAGGAACA+CGG | + | chr6_2:6445135-6445154 | None:intergenic | 45.0% |
| !! | GCCCTACTTTTCCTTATCAG+AGG | - | chr6_2:6445378-6445397 | Msa0907690:intron | 45.0% |
| AACGGAAAGATGAGTCGATC+CGG | - | chr6_2:6445848-6445867 | Msa0907690:intron | 45.0% | |
| GTCTGGATGCTTGGAAGAAT+TGG | + | chr6_2:6445890-6445909 | None:intergenic | 45.0% | |
| ! | CTTCAATTGGTCTGGATGCT+TGG | + | chr6_2:6445899-6445918 | None:intergenic | 45.0% |
| TCTCACACTAGCAGCAAAAG+AGG | + | chr6_2:6445982-6446001 | None:intergenic | 45.0% | |
| ! | TGATGTGTGAGTGTCGTGTC+TGG | + | chr6_2:6439939-6439958 | None:intergenic | 50.0% |
| CGACACTCACACATCAACAC+CGG | - | chr6_2:6439943-6439962 | Msa0907690:intron | 50.0% | |
| TGTAGCCAACCCCACTTACT+AGG | + | chr6_2:6439991-6440010 | None:intergenic | 50.0% | |
| !! | AGTAAGTGGGGTTGGCTACA+TGG | - | chr6_2:6439991-6440010 | Msa0907690:intron | 50.0% |
| CGTAATTGAGAGTGGTGGCA+AGG | - | chr6_2:6440248-6440267 | Msa0907690:intron | 50.0% | |
| TTGAGAGTGGTGGCAAGGTT+CGG | - | chr6_2:6440253-6440272 | Msa0907690:intron | 50.0% | |
| CGCGACGGACCTTTATATTG+AGG | - | chr6_2:6440293-6440312 | Msa0907690:intron | 50.0% | |
| TGTGACCGCAATTGCAGTTG+TGG | - | chr6_2:6440357-6440376 | Msa0907690:intron | 50.0% | |
| CAGAGATGAGGATGTTGCGT+TGG | - | chr6_2:6440474-6440493 | Msa0907690:intron | 50.0% | |
| AGGATGTTGCGTTGGATGTG+TGG | - | chr6_2:6440482-6440501 | Msa0907690:intron | 50.0% | |
| CTTGGTGAAGGAACTGGACT+TGG | + | chr6_2:6441401-6441420 | None:intergenic | 50.0% | |
| AACGCTCTTGGTGAAGGAAC+TGG | + | chr6_2:6441407-6441426 | None:intergenic | 50.0% | |
| ! | AGTTCCTTCACCAAGAGCGT+TGG | - | chr6_2:6441406-6441425 | Msa0907690:intron | 50.0% |
| CTATCCAACGCTCTTGGTGA+AGG | + | chr6_2:6441413-6441432 | None:intergenic | 50.0% | |
| !! | CTTCACCAAGAGCGTTGGAT+AGG | - | chr6_2:6441411-6441430 | Msa0907690:intron | 50.0% |
| CCAAACCTATCCAACGCTCT+TGG | + | chr6_2:6441419-6441438 | None:intergenic | 50.0% | |
| !! | CCAAGAGCGTTGGATAGGTT+TGG | - | chr6_2:6441416-6441435 | Msa0907690:intron | 50.0% |
| TGGAGGAAGATGATTGGGGT+TGG | - | chr6_2:6441636-6441655 | Msa0907690:intron | 50.0% | |
| AGGAAGATGATTGGGGTTGG+TGG | - | chr6_2:6441639-6441658 | Msa0907690:intron | 50.0% | |
| ! | GGAAGATGATTGGGGTTGGT+GGG | - | chr6_2:6441640-6441659 | Msa0907690:intron | 50.0% |
| TTCCAGCAAAGACATGGACC+TGG | - | chr6_2:6442029-6442048 | Msa0907690:intron | 50.0% | |
| AAAGACATGGACCTGGTCAG+CGG | - | chr6_2:6442036-6442055 | Msa0907690:intron | 50.0% | |
| CAGCTAAAAACCCCATTCCC+TGG | + | chr6_2:6442200-6442219 | None:intergenic | 50.0% | |
| !!! | CAGGGAATGGGGTTTTTAGC+TGG | - | chr6_2:6442198-6442217 | Msa0907690:intron | 50.0% |
| ! | TGAGCGAGGAGGATGCATTT+TGG | - | chr6_2:6442238-6442257 | Msa0907690:intron | 50.0% |
| CAGATAGAGTCCCTCCATTG+GGG | + | chr6_2:6442298-6442317 | None:intergenic | 50.0% | |
| CCAGATAGAGTCCCTCCATT+GGG | + | chr6_2:6442299-6442318 | None:intergenic | 50.0% | |
| ACCAGATAGAGTCCCTCCAT+TGG | + | chr6_2:6442300-6442319 | None:intergenic | 50.0% | |
| !! | AGGGAGCATCTACCGAAGTT+AGG | - | chr6_2:6443160-6443179 | Msa0907690:intron | 50.0% |
| !! | CACTGGCTTGCATACATGCT+AGG | + | chr6_2:6443214-6443233 | None:intergenic | 50.0% |
| CTAGCATGTATGCAAGCCAG+TGG | - | chr6_2:6443212-6443231 | Msa0907690:intron | 50.0% | |
| CCCAGATTCGAAGAGCCAAA+TGG | + | chr6_2:6443270-6443289 | None:intergenic | 50.0% | |
| CATGTCTATCGCTACAGCCT+AGG | - | chr6_2:6444001-6444020 | Msa0907690:CDS | 50.0% | |
| ! | CTTTTCGGCTCTGTCTATGG+TGG | - | chr6_2:6444358-6444377 | Msa0907690:exon | 50.0% |
| CACCGGTAGGAGACCTATTA+AGG | + | chr6_2:6444388-6444407 | None:intergenic | 50.0% | |
| ! | AAAGAAGGTGATGCACCGGT+AGG | + | chr6_2:6444401-6444420 | None:intergenic | 50.0% |
| CAACCACCGTTAAGACCTTC+TGG | - | chr6_2:6444546-6444565 | Msa0907690:intron | 50.0% | |
| GTACCAGAAGGTCTTAACGG+TGG | + | chr6_2:6444552-6444571 | None:intergenic | 50.0% | |
| AAGACCTTCTGGTACCTCTC+GGG | - | chr6_2:6444557-6444576 | Msa0907690:intron | 50.0% | |
| AATGGAGGACATGTCGGAGA+GGG | + | chr6_2:6445109-6445128 | None:intergenic | 50.0% | |
| CGGTAGAATGGAGGACATGT+CGG | + | chr6_2:6445115-6445134 | None:intergenic | 50.0% | |
| CAAGGAACACGGTAGAATGG+AGG | + | chr6_2:6445124-6445143 | None:intergenic | 50.0% | |
| !! | TCCTCTAACTTGCTCACGGT+AGG | - | chr6_2:6445324-6445343 | Msa0907690:intron | 50.0% |
| TCCTACCGTGAGCAAGTTAG+AGG | + | chr6_2:6445328-6445347 | None:intergenic | 50.0% | |
| TCACGGTAGGAGACCTATCA+AGG | - | chr6_2:6445337-6445356 | Msa0907690:intron | 50.0% | |
| AGACCTATCAAGGTCTCCCA+CGG | - | chr6_2:6445347-6445366 | Msa0907690:intron | 50.0% | |
| ! | GTGAGTGTCGTGTCTGGTGT+CGG | + | chr6_2:6439933-6439952 | None:intergenic | 55.0% |
| GGTGGCAAGGTTCGGAATTG+TGG | - | chr6_2:6440261-6440280 | Msa0907690:intron | 55.0% | |
| TTGTGGCTGCAGTTACGCGA+CGG | - | chr6_2:6440278-6440297 | Msa0907690:intron | 55.0% | |
| GCGGTCCACAACTGCAATTG+CGG | + | chr6_2:6440365-6440384 | None:intergenic | 55.0% | |
| ACGGAGGCAAGCTATGCCAT+TGG | - | chr6_2:6441309-6441328 | Msa0907690:intron | 55.0% | |
| !! | TTGGGGTTGGTGGGAGTGAT+TGG | - | chr6_2:6441649-6441668 | Msa0907690:intron | 55.0% |
| CGAGACATCAGCCTCTGAAC+TGG | - | chr6_2:6441962-6441981 | Msa0907690:intron | 55.0% | |
| GACCAGGTCCATGTCTTTGC+TGG | + | chr6_2:6442034-6442053 | None:intergenic | 55.0% | |
| CCCAATGGAGGGACTCTATC+TGG | - | chr6_2:6442296-6442315 | Msa0907690:CDS | 55.0% | |
| TCCTGACACGTTATTGCCGC+TGG | - | chr6_2:6443588-6443607 | Msa0907690:intron | 55.0% | |
| !! | GCCGCTGGCTTATTCCATCA+AGG | - | chr6_2:6443603-6443622 | Msa0907690:intron | 55.0% |
| ATGGAGGACATGTCGGAGAG+GGG | + | chr6_2:6445108-6445127 | None:intergenic | 55.0% | |
| GAATGGAGGACATGTCGGAG+AGG | + | chr6_2:6445110-6445129 | None:intergenic | 55.0% | |
| CTACCGTGGGAGACCTTGAT+AGG | + | chr6_2:6445353-6445372 | None:intergenic | 55.0% | |
| TTGTAGAGGGACCGCTGACC+AGG | + | chr6_2:6442050-6442069 | None:intergenic | 60.0% | |
| TCCCTCCATTGGGGCGTGAA+CGG | + | chr6_2:6442289-6442308 | None:intergenic | 60.0% | |
| GCCAGCGGCAATAACGTGTC+AGG | + | chr6_2:6443592-6443611 | None:intergenic | 60.0% | |
| TGGAGGACATGTCGGAGAGG+GGG | + | chr6_2:6445107-6445126 | None:intergenic | 60.0% | |
| !! | AGTAGGGCGCTGTCTACCGT+GGG | + | chr6_2:6445366-6445385 | None:intergenic | 60.0% |
| !! | AAGTAGGGCGCTGTCTACCG+TGG | + | chr6_2:6445367-6445386 | None:intergenic | 60.0% |
| AGGAGCCGTTCACGCCCCAA+TGG | - | chr6_2:6442281-6442300 | Msa0907690:intron | 65.0% | |
| AGCCGTTCACGCCCCAATGG+AGG | - | chr6_2:6442284-6442303 | Msa0907690:intron | 65.0% | |
| GCCGTTCACGCCCCAATGGA+GGG | - | chr6_2:6442285-6442304 | Msa0907690:intron | 65.0% | |
| !! | GGGACCCGAGAGGTACCAGA+AGG | + | chr6_2:6444564-6444583 | None:intergenic | 65.0% |
| CGAGTGAACAGGGACCCGAG+AGG | + | chr6_2:6444574-6444593 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 6439479 | 6446257 | 6439479 | ID=Msa0907690;Name=Msa0907690 |
| chr6_2 | mRNA | 6439479 | 6446257 | 6439479 | ID=Msa0907690-mRNA-1;Parent=Msa0907690;Name=Msa0907690-mRNA-1;_AED=0.28;_eAED=0.28;_QI=234|1|1|1|0.87|0.77|9|341|367 |
| chr6_2 | exon | 6439479 | 6439933 | 6439479 | ID=Msa0907690-mRNA-1:exon:2015;Parent=Msa0907690-mRNA-1 |
| chr6_2 | exon | 6442112 | 6442210 | 6442112 | ID=Msa0907690-mRNA-1:exon:2014;Parent=Msa0907690-mRNA-1 |
| chr6_2 | exon | 6442290 | 6442349 | 6442290 | ID=Msa0907690-mRNA-1:exon:2013;Parent=Msa0907690-mRNA-1 |
| chr6_2 | exon | 6442430 | 6442627 | 6442430 | ID=Msa0907690-mRNA-1:exon:2012;Parent=Msa0907690-mRNA-1 |
| chr6_2 | exon | 6443419 | 6443535 | 6443419 | ID=Msa0907690-mRNA-1:exon:2011;Parent=Msa0907690-mRNA-1 |
| chr6_2 | exon | 6443618 | 6443788 | 6443618 | ID=Msa0907690-mRNA-1:exon:2010;Parent=Msa0907690-mRNA-1 |
| chr6_2 | exon | 6443927 | 6444128 | 6443927 | ID=Msa0907690-mRNA-1:exon:2009;Parent=Msa0907690-mRNA-1 |
| chr6_2 | exon | 6444226 | 6444448 | 6444226 | ID=Msa0907690-mRNA-1:exon:2008;Parent=Msa0907690-mRNA-1 |
| chr6_2 | exon | 6446104 | 6446257 | 6446104 | ID=Msa0907690-mRNA-1:exon:2007;Parent=Msa0907690-mRNA-1 |
| chr6_2 | five_prime_UTR | 6446104 | 6446257 | 6446104 | ID=Msa0907690-mRNA-1:five_prime_utr;Parent=Msa0907690-mRNA-1 |
| chr6_2 | five_prime_UTR | 6444369 | 6444448 | 6444369 | ID=Msa0907690-mRNA-1:five_prime_utr;Parent=Msa0907690-mRNA-1 |
| chr6_2 | CDS | 6444226 | 6444368 | 6444226 | ID=Msa0907690-mRNA-1:cds;Parent=Msa0907690-mRNA-1 |
| chr6_2 | CDS | 6443927 | 6444128 | 6443927 | ID=Msa0907690-mRNA-1:cds;Parent=Msa0907690-mRNA-1 |
| chr6_2 | CDS | 6443618 | 6443788 | 6443618 | ID=Msa0907690-mRNA-1:cds;Parent=Msa0907690-mRNA-1 |
| chr6_2 | CDS | 6443419 | 6443535 | 6443419 | ID=Msa0907690-mRNA-1:cds;Parent=Msa0907690-mRNA-1 |
| chr6_2 | CDS | 6442430 | 6442627 | 6442430 | ID=Msa0907690-mRNA-1:cds;Parent=Msa0907690-mRNA-1 |
| chr6_2 | CDS | 6442290 | 6442349 | 6442290 | ID=Msa0907690-mRNA-1:cds;Parent=Msa0907690-mRNA-1 |
| chr6_2 | CDS | 6442112 | 6442210 | 6442112 | ID=Msa0907690-mRNA-1:cds;Parent=Msa0907690-mRNA-1 |
| chr6_2 | CDS | 6439820 | 6439933 | 6439820 | ID=Msa0907690-mRNA-1:cds;Parent=Msa0907690-mRNA-1 |
| chr6_2 | three_prime_UTR | 6439479 | 6439819 | 6439479 | ID=Msa0907690-mRNA-1:three_prime_utr;Parent=Msa0907690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
