Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1447300 | A0A072V374 | 96.067 | 356 | 12 | 1 | 1 | 356 | 1 | 354 | 0.0 | 688 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001950 | Msa1447300 | 0.830541 | 2.771757e-55 | -8.615850e-47 |
| Msa0012240 | Msa1447300 | 0.801361 | 9.338286e-49 | -8.615850e-47 |
| Msa0027540 | Msa1447300 | 0.812056 | 5.137021e-51 | -8.615850e-47 |
| Msa0030380 | Msa1447300 | 0.817806 | 2.723617e-52 | -8.615850e-47 |
| Msa0032120 | Msa1447300 | 0.849943 | 2.337804e-60 | -8.615850e-47 |
| Msa0032400 | Msa1447300 | 0.831942 | 1.254237e-55 | -8.615850e-47 |
| Msa0044710 | Msa1447300 | 0.807653 | 4.551115e-50 | -8.615850e-47 |
| Msa0050580 | Msa1447300 | 0.834132 | 3.576061e-56 | -8.615850e-47 |
| Msa0050720 | Msa1447300 | 0.806898 | 6.578167e-50 | -8.615850e-47 |
| Msa0050770 | Msa1447300 | 0.803003 | 4.288831e-49 | -8.615850e-47 |
| Msa0056520 | Msa1447300 | 0.878337 | 3.047972e-69 | -8.615850e-47 |
| Msa0056690 | Msa1447300 | 0.879450 | 1.233574e-69 | -8.615850e-47 |
| Msa0075310 | Msa1447300 | 0.800607 | 1.331327e-48 | -8.615850e-47 |
| Msa1375340 | Msa1447300 | 0.821585 | 3.734202e-53 | -8.615850e-47 |
| Msa1382310 | Msa1447300 | 0.838341 | 3.045828e-57 | -8.615850e-47 |
| Msa1387200 | Msa1447300 | 0.824576 | 7.487960e-54 | -8.615850e-47 |
| Msa1397950 | Msa1447300 | 0.803433 | 3.493737e-49 | -8.615850e-47 |
| Msa1398480 | Msa1447300 | 0.859218 | 4.814302e-63 | -8.615850e-47 |
| Msa1440610 | Msa1447300 | 0.804672 | 1.930233e-49 | -8.615850e-47 |
| Msa1447300 | Msa1449880 | 0.854019 | 1.626586e-61 | -8.615850e-47 |
| Msa1447300 | Msa1453620 | 0.849269 | 3.604868e-60 | -8.615850e-47 |
| Msa1447300 | Msa1454110 | 0.803153 | 3.993258e-49 | -8.615850e-47 |
| Msa1447300 | Msa1460440 | 0.984215 | 6.439565e-160 | -8.615850e-47 |
| Msa0621120 | Msa1447300 | 0.879654 | 1.044123e-69 | -8.615850e-47 |
| Msa0639370 | Msa1447300 | 0.843147 | 1.675157e-58 | -8.615850e-47 |
| Msa0661240 | Msa1447300 | 0.866191 | 3.413728e-65 | -8.615850e-47 |
| Msa0669220 | Msa1447300 | 0.816639 | 4.985291e-52 | -8.615850e-47 |
| Msa0677290 | Msa1447300 | 0.839721 | 1.337878e-57 | -8.615850e-47 |
| Msa0688370 | Msa1447300 | 0.806616 | 7.543873e-50 | -8.615850e-47 |
| Msa0704220 | Msa1447300 | 0.809352 | 1.974683e-50 | -8.615850e-47 |
| Msa0727170 | Msa1447300 | 0.838954 | 2.115482e-57 | -8.615850e-47 |
| Msa0728280 | Msa1447300 | 0.811144 | 8.109558e-51 | -8.615850e-47 |
| Msa0728380 | Msa1447300 | 0.817056 | 4.019207e-52 | -8.615850e-47 |
| Msa0728540 | Msa1447300 | 0.821223 | 4.525336e-53 | -8.615850e-47 |
| Msa0734660 | Msa1447300 | 0.802146 | 6.443391e-49 | -8.615850e-47 |
| Msa0746600 | Msa1447300 | 0.813251 | 2.813433e-51 | -8.615850e-47 |
| Msa0767520 | Msa1447300 | 0.871340 | 7.366004e-67 | -8.615850e-47 |
| Msa0769830 | Msa1447300 | 0.810842 | 9.426421e-51 | -8.615850e-47 |
| Msa0776220 | Msa1447300 | 0.812657 | 3.797877e-51 | -8.615850e-47 |
| Msa0776480 | Msa1447300 | 0.814116 | 1.815169e-51 | -8.615850e-47 |
| Msa0813320 | Msa1447300 | -0.800840 | 1.193247e-48 | -8.615850e-47 |
| Msa0813670 | Msa1447300 | 0.805610 | 1.228416e-49 | -8.615850e-47 |
| Msa0813720 | Msa1447300 | 0.816127 | 6.489961e-52 | -8.615850e-47 |
| Msa0816640 | Msa1447300 | 0.811217 | 7.818136e-51 | -8.615850e-47 |
| Msa0835520 | Msa1447300 | 0.841120 | 5.760093e-58 | -8.615850e-47 |
| Msa0141830 | Msa1447300 | 0.806813 | 6.856223e-50 | -8.615850e-47 |
| Msa0168100 | Msa1447300 | 0.803733 | 3.028587e-49 | -8.615850e-47 |
| Msa0173740 | Msa1447300 | 0.821200 | 4.581286e-53 | -8.615850e-47 |
| Msa0173820 | Msa1447300 | 0.826846 | 2.167435e-54 | -8.615850e-47 |
| Msa0173830 | Msa1447300 | 0.837615 | 4.682735e-57 | -8.615850e-47 |
| Msa0185700 | Msa1447300 | 0.851775 | 7.121821e-61 | -8.615850e-47 |
| Msa0238250 | Msa1447300 | -0.813755 | 2.179472e-51 | -8.615850e-47 |
| Msa1235150 | Msa1447300 | 0.808147 | 3.572481e-50 | -8.615850e-47 |
| Msa1243170 | Msa1447300 | 0.833792 | 4.351024e-56 | -8.615850e-47 |
| Msa1284520 | Msa1447300 | 0.866918 | 2.005545e-65 | -8.615850e-47 |
| Msa1290200 | Msa1447300 | 0.812941 | 3.290191e-51 | -8.615850e-47 |
| Msa1306580 | Msa1447300 | 0.809516 | 1.820459e-50 | -8.615850e-47 |
| Msa1317030 | Msa1447300 | 0.877780 | 4.775194e-69 | -8.615850e-47 |
| Msa1324000 | Msa1447300 | 0.861629 | 8.969682e-64 | -8.615850e-47 |
| Msa0376510 | Msa1447300 | 0.815853 | 7.470563e-52 | -8.615850e-47 |
| Msa0378080 | Msa1447300 | 0.861601 | 9.151583e-64 | -8.615850e-47 |
| Msa0384430 | Msa1447300 | 0.962582 | 4.753823e-121 | -8.615850e-47 |
| Msa0384750 | Msa1447300 | 0.860417 | 2.096327e-63 | -8.615850e-47 |
| Msa0390060 | Msa1447300 | 0.875569 | 2.778953e-68 | -8.615850e-47 |
| Msa0392210 | Msa1447300 | 0.840091 | 1.071297e-57 | -8.615850e-47 |
| Msa0395960 | Msa1447300 | 0.817343 | 3.464195e-52 | -8.615850e-47 |
| Msa0425050 | Msa1447300 | 0.819770 | 9.753172e-53 | -8.615850e-47 |
| Msa0425940 | Msa1447300 | 0.816869 | 4.425979e-52 | -8.615850e-47 |
| Msa0426160 | Msa1447300 | 0.819268 | 1.269681e-52 | -8.615850e-47 |
| Msa0443500 | Msa1447300 | 0.829133 | 6.103607e-55 | -8.615850e-47 |
| Msa0465790 | Msa1447300 | 0.817490 | 3.209303e-52 | -8.615850e-47 |
| Msa0468160 | Msa1447300 | 0.841595 | 4.318791e-58 | -8.615850e-47 |
| Msa0470180 | Msa1447300 | 0.864399 | 1.250974e-64 | -8.615850e-47 |
| Msa1072340 | Msa1447300 | 0.843783 | 1.133161e-58 | -8.615850e-47 |
| Msa0244270 | Msa1447300 | 0.806245 | 9.031580e-50 | -8.615850e-47 |
| Msa0246690 | Msa1447300 | 0.801512 | 8.693374e-49 | -8.615850e-47 |
| Msa0346980 | Msa1447300 | 0.823297 | 1.494352e-53 | -8.615850e-47 |
| Msa0349060 | Msa1447300 | 0.853189 | 2.816199e-61 | -8.615850e-47 |
| Msa0358170 | Msa1447300 | 0.850758 | 1.380751e-60 | -8.615850e-47 |
| Msa1111630 | Msa1447300 | 0.842112 | 3.155165e-58 | -8.615850e-47 |
| Msa1118150 | Msa1447300 | 0.833897 | 4.095554e-56 | -8.615850e-47 |
| Msa1159350 | Msa1447300 | 0.836782 | 7.648522e-57 | -8.615850e-47 |
| Msa1167170 | Msa1447300 | 0.835868 | 1.305805e-56 | -8.615850e-47 |
| Msa1171690 | Msa1447300 | 0.804678 | 1.925284e-49 | -8.615850e-47 |
| Msa1177240 | Msa1447300 | 0.862621 | 4.451593e-64 | -8.615850e-47 |
| Msa1188940 | Msa1447300 | 0.868007 | 8.990371e-66 | -8.615850e-47 |
| Msa0487770 | Msa1447300 | 0.849098 | 4.019794e-60 | -8.615850e-47 |
| Msa0491020 | Msa1447300 | 0.856521 | 3.041804e-62 | -8.615850e-47 |
| Msa0518040 | Msa1447300 | 0.856956 | 2.265595e-62 | -8.615850e-47 |
| Msa0522660 | Msa1447300 | 0.967506 | 2.264914e-127 | -8.615850e-47 |
| Msa0546840 | Msa1447300 | 0.853236 | 2.731361e-61 | -8.615850e-47 |
| Msa0571610 | Msa1447300 | 0.806039 | 9.981297e-50 | -8.615850e-47 |
| Msa0583740 | Msa1447300 | 0.861903 | 7.395023e-64 | -8.615850e-47 |
| Msa0590680 | Msa1447300 | 0.820649 | 6.134262e-53 | -8.615850e-47 |
| Msa0847100 | Msa1447300 | 0.845920 | 3.005036e-59 | -8.615850e-47 |
| Msa0848760 | Msa1447300 | 0.808300 | 3.314411e-50 | -8.615850e-47 |
| Msa0854120 | Msa1447300 | 0.802591 | 5.218324e-49 | -8.615850e-47 |
| Msa0878980 | Msa1447300 | -0.804451 | 2.147159e-49 | -8.615850e-47 |
| Msa0880220 | Msa1447300 | 0.816975 | 4.190364e-52 | -8.615850e-47 |
| Msa0913090 | Msa1447300 | 0.829891 | 3.994498e-55 | -8.615850e-47 |
| Msa0950320 | Msa1447300 | 0.837174 | 6.074253e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1447300 | MtrunA17_Chr3g0141281 | 96.067 | 356 | 12 | 1 | 1 | 356 | 1 | 354 | 0.0 | 688 |
| Msa1447300 | MtrunA17_Chr3g0117341 | 29.907 | 321 | 206 | 6 | 42 | 349 | 56 | 370 | 4.77e-46 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1447300 | AT1G48460.1 | 60.584 | 274 | 104 | 1 | 83 | 356 | 71 | 340 | 6.08e-120 | 350 |
| Msa1447300 | AT1G48460.2 | 53.650 | 274 | 86 | 2 | 83 | 356 | 71 | 303 | 2.31e-98 | 294 |
| Msa1447300 | AT5G63040.1 | 29.762 | 336 | 222 | 5 | 13 | 346 | 35 | 358 | 1.83e-34 | 130 |
| Msa1447300 | AT5G63040.2 | 29.762 | 336 | 222 | 5 | 13 | 346 | 35 | 358 | 1.91e-34 | 130 |
Find 90 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGAGGCTATTCCCTTCT+AGG | 0.161760 | tig0031687:-34097 | Msa1447300:CDS |
| AGATATCAGAAACAGAATTT+TGG | 0.173325 | tig0031687:-37011 | Msa1447300:CDS |
| AGTTCTAGTGTTCCTGTTAA+TGG | 0.210562 | tig0031687:-36767 | Msa1447300:CDS |
| GAGCTCTTACTTATGGGTTT+TGG | 0.226459 | tig0031687:-36627 | Msa1447300:CDS |
| AGACAAACCTCAAATATAAT+AGG | 0.229602 | tig0031687:+34431 | None:intergenic |
| AGCAGCACAGCCAACTAAAA+AGG | 0.270995 | tig0031687:+34511 | None:intergenic |
| TTAGAGCTGTACTGTAAATA+TGG | 0.272745 | tig0031687:+34674 | None:intergenic |
| CATCAACTTCTCGGCAAAAT+TGG | 0.283065 | tig0031687:+34241 | None:intergenic |
| AAGAGGAGAGCTCTTACTTA+TGG | 0.285229 | tig0031687:-36634 | Msa1447300:CDS |
| TTCCATCGTCACATCAGTTT+AGG | 0.286689 | tig0031687:+37218 | None:intergenic |
| GTTCTAGTGTTCCTGTTAAT+GGG | 0.303684 | tig0031687:-36766 | Msa1447300:CDS |
| GAACCATTTCATGGTAAATC+AGG | 0.312758 | tig0031687:-36728 | Msa1447300:CDS |
| GCACACCGTGGTAAGTTGTT+AGG | 0.312996 | tig0031687:-33848 | Msa1447300:three_prime_UTR |
| TCCATCGTCACATCAGTTTA+GGG | 0.322289 | tig0031687:+37219 | None:intergenic |
| CTACATTTGTTGTGAGTAAA+GGG | 0.340887 | tig0031687:-37276 | Msa1447300:five_prime_UTR |
| GAACGAAGTGGAGCTTTGTT+TGG | 0.345152 | tig0031687:-34179 | Msa1447300:CDS |
| TGCATACAATACCCAGTAAC+TGG | 0.357271 | tig0031687:+34141 | None:intergenic |
| TTTATTACTGACACGATGTT+TGG | 0.357578 | tig0031687:+37149 | None:intergenic |
| GGTGTGCGAATCAATTATTT+TGG | 0.360901 | tig0031687:+33864 | None:intergenic |
| CCACTTCGTTCTAGTACTTC+AGG | 0.361982 | tig0031687:+34191 | None:intergenic |
| TCTAGTCCCTATTATATTTG+AGG | 0.362027 | tig0031687:-34438 | Msa1447300:intron |
| GCTTCTGATTCCAATGTAAA+TGG | 0.366214 | tig0031687:-36815 | Msa1447300:CDS |
| ATTTGCATTTGAGAGACATT+TGG | 0.369154 | tig0031687:-34486 | Msa1447300:CDS |
| AATGGGTTGGAACCATTTCA+TGG | 0.370157 | tig0031687:-36737 | Msa1447300:CDS |
| TACTGGGTATTGTATGCATT+TGG | 0.376974 | tig0031687:-34136 | Msa1447300:CDS |
| CTTTCGCAGTCACAAGCAAC+TGG | 0.380671 | tig0031687:-37050 | Msa1447300:intron |
| TGGAGCTTTGTTTGGAATGA+TGG | 0.401307 | tig0031687:-34171 | Msa1447300:CDS |
| CACACCGTGGTAAGTTGTTA+GGG | 0.409549 | tig0031687:-33847 | Msa1447300:three_prime_UTR |
| GAACCTGATTTACCATGAAA+TGG | 0.410530 | tig0031687:+36725 | None:intergenic |
| ACTACATTTGTTGTGAGTAA+AGG | 0.411169 | tig0031687:-37277 | Msa1447300:five_prime_UTR |
| ACCTCTGCTTTCCTCACAAC+GGG | 0.412478 | tig0031687:-34614 | Msa1447300:CDS |
| AGAGGAGAGCTCTTACTTAT+GGG | 0.413551 | tig0031687:-36633 | Msa1447300:CDS |
| CGGAGCGGATAACATTTATA+AGG | 0.421430 | tig0031687:-34017 | Msa1447300:three_prime_UTR |
| AAAGATGATATGAATGCAAC+AGG | 0.422615 | tig0031687:+36602 | None:intergenic |
| GACAAACCTCAAATATAATA+GGG | 0.437022 | tig0031687:+34432 | None:intergenic |
| GAGAAGTGAAGTGGTTGAGA+GGG | 0.440340 | tig0031687:+37171 | None:intergenic |
| TACAGTACAGCTCTAAAAGA+TGG | 0.450227 | tig0031687:-34667 | Msa1447300:CDS |
| CATAGAGTACATCAACTTCT+CGG | 0.455751 | tig0031687:+34232 | None:intergenic |
| AAAAGATGGGGTCTCATCAC+TGG | 0.458268 | tig0031687:-34653 | Msa1447300:CDS |
| ACTTCCCTTCTTCTACAGAT+TGG | 0.459140 | tig0031687:+36678 | None:intergenic |
| AAGGCGATTAACTTCAATGT+AGG | 0.460653 | tig0031687:-33998 | Msa1447300:three_prime_UTR |
| TTTGATTTCAGCATTCAAAC+AGG | 0.466305 | tig0031687:-36900 | Msa1447300:intron |
| GAAGTTGATGTACTCTATGA+AGG | 0.469649 | tig0031687:-34228 | Msa1447300:CDS |
| CAGAGGTTATATATCCTTTG+AGG | 0.492149 | tig0031687:+34630 | None:intergenic |
| TTCCAATGCACCATTTACAT+TGG | 0.492222 | tig0031687:+36805 | None:intergenic |
| GGAGAAGTGAAGTGGTTGAG+AGG | 0.505328 | tig0031687:+37170 | None:intergenic |
| CATTGATGACGTTTCTCTTG+AGG | 0.505870 | tig0031687:-34112 | Msa1447300:CDS |
| ACAGTACAGCTCTAAAAGAT+GGG | 0.516922 | tig0031687:-34666 | Msa1447300:CDS |
| GTCGGTGGTTCGCATGGCAG+CGG | 0.518805 | tig0031687:-34549 | Msa1447300:CDS |
| ACAGACGTGGGTCATCGTGC+TGG | 0.519318 | tig0031687:-34463 | Msa1447300:CDS |
| ATTCTGCCACAGTTCTTCGT+TGG | 0.519550 | tig0031687:-36578 | Msa1447300:CDS |
| ATCTGTAGAAGAAGGGAAGT+TGG | 0.519792 | tig0031687:-36675 | Msa1447300:CDS |
| TCAGTTTAGGGTTCAAGAAG+TGG | 0.524196 | tig0031687:+37231 | None:intergenic |
| CTTCGTTGGCACTGTTGTTG+CGG | 0.536995 | tig0031687:-36564 | Msa1447300:CDS |
| TTCTAGTGTTCCTGTTAATG+GGG | 0.540217 | tig0031687:-36765 | Msa1447300:CDS |
| ACACACCAATCTGTAGAAGA+AGG | 0.540836 | tig0031687:-36683 | Msa1447300:CDS |
| GGTCTCATCACTGGCCTCAA+AGG | 0.549169 | tig0031687:-34644 | Msa1447300:CDS |
| TTCCAATGTAAATGGTGCAT+TGG | 0.552698 | tig0031687:-36807 | Msa1447300:CDS |
| GAGCTCTCCTCTTGTTTGAA+CGG | 0.557951 | tig0031687:+36644 | None:intergenic |
| GTCACATACAAAAGAAGAAG+AGG | 0.559688 | tig0031687:+34575 | None:intergenic |
| GACCTGGTCGGTGGTTCGCA+TGG | 0.562381 | tig0031687:-34555 | Msa1447300:CDS |
| TGCCATGCGAACCACCGACC+AGG | 0.563381 | tig0031687:+34553 | None:intergenic |
| TGTACTGTAAATATGGCCTC+TGG | 0.563744 | tig0031687:+34681 | None:intergenic |
| GGAAGAGTGTTGTACATAGT+CGG | 0.575600 | tig0031687:-34037 | Msa1447300:three_prime_UTR |
| AAGTTGATGTACTCTATGAA+GGG | 0.577690 | tig0031687:-34227 | Msa1447300:CDS |
| TCCGAGGCACTGTTCTATGT+CGG | 0.580851 | tig0031687:-34737 | Msa1447300:CDS |
| ATCTGCTCCGTTCAAACAAG+AGG | 0.588809 | tig0031687:-36651 | Msa1447300:CDS |
| GAGAGACATTTGGACAGACG+TGG | 0.588933 | tig0031687:-34476 | Msa1447300:CDS |
| CACACCAATCTGTAGAAGAA+GGG | 0.595884 | tig0031687:-36682 | Msa1447300:CDS |
| TTTCTGCTACTGGCCTAGAA+GGG | 0.597512 | tig0031687:+34084 | None:intergenic |
| TCAAATATAATAGGGACTAG+AGG | 0.608339 | tig0031687:+34440 | None:intergenic |
| TGTGACTTCATTCTCTTCCG+AGG | 0.611821 | tig0031687:-34753 | Msa1447300:CDS |
| AACCTCTGCTTTCCTCACAA+CGG | 0.613720 | tig0031687:-34615 | Msa1447300:CDS |
| TCTAGTGTTCCTGTTAATGG+GGG | 0.617974 | tig0031687:-36764 | Msa1447300:CDS |
| AGTTGATGTACTCTATGAAG+GGG | 0.619565 | tig0031687:-34226 | Msa1447300:CDS |
| TCCGACATAGAACAGTGCCT+CGG | 0.628444 | tig0031687:+34736 | None:intergenic |
| AGGTGGCTGATCGTGTCCAG+AGG | 0.630587 | tig0031687:-34697 | Msa1447300:CDS |
| TCTAGTACTTCAGGTGACGC+AGG | 0.632274 | tig0031687:+34200 | None:intergenic |
| TTTGTATGTGACCTGGTCGG+TGG | 0.632802 | tig0031687:-34564 | Msa1447300:CDS |
| CGATGTTTGGAGAAGTGAAG+TGG | 0.648063 | tig0031687:+37162 | None:intergenic |
| CCTGAAGTACTAGAACGAAG+TGG | 0.656210 | tig0031687:-34191 | Msa1447300:CDS |
| CAGTACAGCTCTAAAAGATG+GGG | 0.663248 | tig0031687:-34665 | Msa1447300:CDS |
| AGAGACATTTGGACAGACGT+GGG | 0.672518 | tig0031687:-34475 | Msa1447300:CDS |
| ATACAAAAGAAGAAGAGGAA+CGG | 0.679901 | tig0031687:+34580 | None:intergenic |
| TGAACCCTAACAACTTACCA+CGG | 0.681279 | tig0031687:+33843 | None:intergenic |
| ACCCTAAACTGATGTGACGA+TGG | 0.681521 | tig0031687:-37220 | Msa1447300:exon |
| ACCCGTTGTGAGGAAAGCAG+AGG | 0.694025 | tig0031687:+34613 | None:intergenic |
| ACAGTGCCAACGAAGAACTG+TGG | 0.710210 | tig0031687:+36572 | None:intergenic |
| AATAATTGATTCGCACACCG+TGG | 0.717711 | tig0031687:-33860 | Msa1447300:three_prime_UTR |
| AGTGTTGTACATAGTCGGAG+CGG | 0.720519 | tig0031687:-34032 | Msa1447300:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATGATTTGATTTTAAA+AGG | - | tig0031687:34518-34537 | Msa1447300:CDS | 10.0% |
| !!! | AAATGATTTTTTTAACAAAA+TGG | + | tig0031687:35012-35031 | None:intergenic | 10.0% |
| !!! | ATTTAGAAAAAAATAGATTT+TGG | + | tig0031687:35072-35091 | None:intergenic | 10.0% |
| !!! | ATTTATAACAATTTGTTGAA+TGG | + | tig0031687:34127-34146 | None:intergenic | 15.0% |
| !!! | GAAATTATTTTGTTTACTTA+AGG | + | tig0031687:35805-35824 | None:intergenic | 15.0% |
| !!! | AAATGTACGATTTTTGTTTT+TGG | - | tig0031687:34082-34101 | Msa1447300:CDS | 20.0% |
| !!! | AATGTACGATTTTTGTTTTT+GGG | - | tig0031687:34083-34102 | Msa1447300:CDS | 20.0% |
| !!! | ATTAAAGAACCTTCATTTTT+GGG | - | tig0031687:34179-34198 | Msa1447300:CDS | 20.0% |
| !!! | TGAAATAGATTTTCATTTTG+AGG | + | tig0031687:35039-35058 | None:intergenic | 20.0% |
| !!! | TCTATTTTTTTCTAAATGCA+AGG | - | tig0031687:35075-35094 | Msa1447300:intron | 20.0% |
| !!! | CAGAATTTTATTTTACTTGT+CGG | + | tig0031687:35519-35538 | None:intergenic | 20.0% |
| !!! | ATGATAATTGTTTTTGTTGT+AGG | - | tig0031687:35557-35576 | Msa1447300:intron | 20.0% |
| !! | GTTAATACCAAATTAGTTAT+TGG | - | tig0031687:35703-35722 | Msa1447300:intron | 20.0% |
| !! | TATAAAGCCAATAACTAATT+TGG | + | tig0031687:35713-35732 | None:intergenic | 20.0% |
| !!! | AAAGACATTGTTTATTTTCT+CGG | + | tig0031687:37148-37167 | None:intergenic | 20.0% |
| ! | AAGAAGAAAAAAAGTTAGTG+TGG | + | tig0031687:33984-34003 | None:intergenic | 25.0% |
| !! | AGATATCAGAAACAGAATTT+TGG | - | tig0031687:34043-34062 | Msa1447300:three_prime_UTR | 25.0% |
| !! | GATATCAGAAACAGAATTTT+GGG | - | tig0031687:34044-34063 | Msa1447300:three_prime_UTR | 25.0% |
| !! | GATTAAAGAACCTTCATTTT+TGG | - | tig0031687:34178-34197 | Msa1447300:CDS | 25.0% |
| !!! | TTTTTCAATCCCAAAAATGA+AGG | + | tig0031687:34191-34210 | None:intergenic | 25.0% |
| ! | TGGGATTGAAAAAATTTCAA+AGG | - | tig0031687:34198-34217 | Msa1447300:CDS | 25.0% |
| !! | TAAATGATAGTTTGTGACAT+AGG | - | tig0031687:34618-34637 | Msa1447300:CDS | 25.0% |
| ! | GTTAATGCCAAATTATTTAG+TGG | - | tig0031687:34767-34786 | Msa1447300:intron | 25.0% |
| ! | TTAAAAAAAGCCCAAACAAA+CGG | + | tig0031687:34914-34933 | None:intergenic | 25.0% |
| ! | CCATTCATAATTACAAAACA+TGG | + | tig0031687:35333-35352 | None:intergenic | 25.0% |
| !! | CCATGTTTTGTAATTATGAA+TGG | - | tig0031687:35330-35349 | Msa1447300:intron | 25.0% |
| !! | TATTTTACTTGTCGGAAATT+CGG | + | tig0031687:35511-35530 | None:intergenic | 25.0% |
| !!! | ATATTCTGGTTGTTATTTCA+CGG | + | tig0031687:35591-35610 | None:intergenic | 25.0% |
| ! | ATCAGCAATATAAACACATT+AGG | + | tig0031687:35626-35645 | None:intergenic | 25.0% |
| ! | TATATGGTAGTATGTTGTTA+AGG | - | tig0031687:35667-35686 | Msa1447300:intron | 25.0% |
| ! | CACAAAGATAACAACAAATA+GGG | + | tig0031687:35887-35906 | None:intergenic | 25.0% |
| ! | CCATTCATAATTTCAAAACA+TGG | + | tig0031687:35919-35938 | None:intergenic | 25.0% |
| !!! | CCATGTTTTGAAATTATGAA+TGG | - | tig0031687:35916-35935 | Msa1447300:intron | 25.0% |
| !!! | TGTATACCTTTTAGAGATTT+TGG | - | tig0031687:36085-36104 | Msa1447300:intron | 25.0% |
| !! | ATTTTGCCAAAATCTCTAAA+AGG | + | tig0031687:36094-36113 | None:intergenic | 25.0% |
| !! | TTTATGTAACTCCATTCTTT+TGG | + | tig0031687:36191-36210 | None:intergenic | 25.0% |
| ! | AAAAGAATGGAGTTACATAA+AGG | - | tig0031687:36190-36209 | Msa1447300:intron | 25.0% |
| !! | TCACAATATCTGCATTTTAT+TGG | + | tig0031687:36286-36305 | None:intergenic | 25.0% |
| ! | GACAAACCTCAAATATAATA+GGG | + | tig0031687:36625-36644 | None:intergenic | 25.0% |
| ! | AGACAAACCTCAAATATAAT+AGG | + | tig0031687:36626-36645 | None:intergenic | 25.0% |
| !!! | GAAAATTACTGAGTTTTGTA+TGG | - | tig0031687:36989-37008 | Msa1447300:intron | 25.0% |
| !! | ACTACATTTGTTGTGAGTAA+AGG | - | tig0031687:33777-33796 | Msa1447300:three_prime_UTR | 30.0% |
| !! | CTACATTTGTTGTGAGTAAA+GGG | - | tig0031687:33778-33797 | Msa1447300:three_prime_UTR | 30.0% |
| TTTATTACTGACACGATGTT+TGG | + | tig0031687:33908-33927 | None:intergenic | 30.0% | |
| ! | TTTGATTTCAGCATTCAAAC+AGG | - | tig0031687:34154-34173 | Msa1447300:CDS | 30.0% |
| AAAGATGATATGAATGCAAC+AGG | + | tig0031687:34455-34474 | None:intergenic | 30.0% | |
| ! | AATTTAAAGCACAGAACAGA+AGG | + | tig0031687:34592-34611 | None:intergenic | 30.0% |
| ! | TTCTGTTCTGTGCTTTAAAT+TGG | - | tig0031687:34591-34610 | Msa1447300:CDS | 30.0% |
| CATCAAGCCACTAAATAATT+TGG | + | tig0031687:34777-34796 | None:intergenic | 30.0% | |
| TGAAACGATCAATTATCAAC+AGG | + | tig0031687:34830-34849 | None:intergenic | 30.0% | |
| CTCAAAGTTTATCATGTGAA+AGG | + | tig0031687:34890-34909 | None:intergenic | 30.0% | |
| TAAAAAAAGCCCAAACAAAC+GGG | + | tig0031687:34913-34932 | None:intergenic | 30.0% | |
| GTTGCATTGTAACTGATAAT+GGG | + | tig0031687:35254-35273 | None:intergenic | 30.0% | |
| AAGAGTTATACAACAAACAG+AGG | + | tig0031687:35429-35448 | None:intergenic | 30.0% | |
| !! | TCTGTTTGTTGTATAACTCT+TGG | - | tig0031687:35428-35447 | Msa1447300:intron | 30.0% |
| !! | CTGTTTGTTGTATAACTCTT+GGG | - | tig0031687:35429-35448 | Msa1447300:intron | 30.0% |
| AGTTCTTTGTCTACACTATA+TGG | - | tig0031687:35651-35670 | Msa1447300:intron | 30.0% | |
| TCAATTACCAATAGTCTTTG+AGG | + | tig0031687:35758-35777 | None:intergenic | 30.0% | |
| ! | CAAAGACTATTGGTAATTGA+TGG | - | tig0031687:35758-35777 | Msa1447300:intron | 30.0% |
| CCACAAAGATAACAACAAAT+AGG | + | tig0031687:35888-35907 | None:intergenic | 30.0% | |
| !! | CCTATTTGTTGTTATCTTTG+TGG | - | tig0031687:35885-35904 | Msa1447300:intron | 30.0% |
| AGAAATGCAGAGAAATTCAA+GGG | + | tig0031687:35960-35979 | None:intergenic | 30.0% | |
| TAGAAATGCAGAGAAATTCA+AGG | + | tig0031687:35961-35980 | None:intergenic | 30.0% | |
| TGAGTTCTCACTAACATATA+TGG | - | tig0031687:36039-36058 | Msa1447300:intron | 30.0% | |
| GAAATTCTGTTCCAAAAGAA+TGG | - | tig0031687:36177-36196 | Msa1447300:intron | 30.0% | |
| ! | TTTGTTTGTGCTGTTAAATG+TGG | - | tig0031687:36220-36239 | Msa1447300:intron | 30.0% |
| TTAGAGCTGTACTGTAAATA+TGG | + | tig0031687:36383-36402 | None:intergenic | 30.0% | |
| ATACAAAAGAAGAAGAGGAA+CGG | + | tig0031687:36477-36496 | None:intergenic | 30.0% | |
| ATTTGCATTTGAGAGACATT+TGG | - | tig0031687:36568-36587 | Msa1447300:CDS | 30.0% | |
| TCAAATATAATAGGGACTAG+AGG | + | tig0031687:36617-36636 | None:intergenic | 30.0% | |
| TCTAGTCCCTATTATATTTG+AGG | - | tig0031687:36616-36635 | Msa1447300:CDS | 30.0% | |
| !! | AAGTTGATGTACTCTATGAA+GGG | - | tig0031687:36827-36846 | Msa1447300:CDS | 30.0% |
| !! | TACTGAGTTTTGTATGGAAT+TGG | - | tig0031687:36995-37014 | Msa1447300:CDS | 30.0% |
| !! | ACTGAGTTTTGTATGGAATT+GGG | - | tig0031687:36996-37015 | Msa1447300:CDS | 30.0% |
| !!! | TATTTTGGCTGTAAACAAAC+AGG | + | tig0031687:37178-37197 | None:intergenic | 30.0% |
| ! | TGTTGTGAGTAAAGGGTTTT+AGG | - | tig0031687:33785-33804 | Msa1447300:three_prime_UTR | 35.0% |
| GCTTCTGATTCCAATGTAAA+TGG | - | tig0031687:34239-34258 | Msa1447300:CDS | 35.0% | |
| TTCCAATGTAAATGGTGCAT+TGG | - | tig0031687:34247-34266 | Msa1447300:CDS | 35.0% | |
| TTCCAATGCACCATTTACAT+TGG | + | tig0031687:34252-34271 | None:intergenic | 35.0% | |
| ! | AGTTCTAGTGTTCCTGTTAA+TGG | - | tig0031687:34287-34306 | Msa1447300:intron | 35.0% |
| GTTCTAGTGTTCCTGTTAAT+GGG | - | tig0031687:34288-34307 | Msa1447300:intron | 35.0% | |
| TTCTAGTGTTCCTGTTAATG+GGG | - | tig0031687:34289-34308 | Msa1447300:intron | 35.0% | |
| CTGTTAATGGGGGTTATAAT+GGG | - | tig0031687:34300-34319 | Msa1447300:intron | 35.0% | |
| GAACCATTTCATGGTAAATC+AGG | - | tig0031687:34326-34345 | Msa1447300:intron | 35.0% | |
| GAACCTGATTTACCATGAAA+TGG | + | tig0031687:34332-34351 | None:intergenic | 35.0% | |
| ! | TCAGGTTCTGTCTCTTTTTA+TGG | - | tig0031687:34344-34363 | Msa1447300:intron | 35.0% |
| ! | CAGGTTCTGTCTCTTTTTAT+GGG | - | tig0031687:34345-34364 | Msa1447300:intron | 35.0% |
| ! | GTTCTGTGCTTTAAATTGGA+TGG | - | tig0031687:34595-34614 | Msa1447300:CDS | 35.0% |
| ! | TGCTCTTTTTGTCTACACTT+TGG | - | tig0031687:34710-34729 | Msa1447300:CDS | 35.0% |
| ! | CTTTTTGTCTACACTTTGGT+AGG | - | tig0031687:34714-34733 | Msa1447300:CDS | 35.0% |
| TCAATTATCAACAGGCTTTG+AGG | + | tig0031687:34822-34841 | None:intergenic | 35.0% | |
| AAAGGAATGACTTTGTATGC+TGG | + | tig0031687:34872-34891 | None:intergenic | 35.0% | |
| GGTTGCATTGTAACTGATAA+TGG | + | tig0031687:35255-35274 | None:intergenic | 35.0% | |
| AAGCTAACAACAACTAGTGT+TGG | + | tig0031687:35297-35316 | None:intergenic | 35.0% | |
| !! | ACTAGTTGTTGTTAGCTTTG+TGG | - | tig0031687:35299-35318 | Msa1447300:intron | 35.0% |
| TCTCACTCACATAACATACA+TGG | - | tig0031687:35387-35406 | Msa1447300:intron | 35.0% | |
| TGTATAACTCTTGGGTATCT+TGG | - | tig0031687:35437-35456 | Msa1447300:intron | 35.0% | |
| GGAACAGCAATCATATATTC+TGG | + | tig0031687:35605-35624 | None:intergenic | 35.0% | |
| ATAACAACAAATAGGGTCAG+TGG | + | tig0031687:35880-35899 | None:intergenic | 35.0% | |
| GAAATGCAGAGAAATTCAAG+GGG | + | tig0031687:35959-35978 | None:intergenic | 35.0% | |
| GTTCTCACTAACATATATGG+AGG | - | tig0031687:36042-36061 | Msa1447300:intron | 35.0% | |
| ! | CTCTAAAAGGTATACAGCAA+AGG | + | tig0031687:36081-36100 | None:intergenic | 35.0% |
| GTGTTTCCACGTTATTCTAT+CGG | - | tig0031687:36117-36136 | Msa1447300:intron | 35.0% | |
| ACAAATCCGATAGAATAACG+TGG | + | tig0031687:36126-36145 | None:intergenic | 35.0% | |
| ATGGAGTTACATAAAGGTCA+TGG | - | tig0031687:36196-36215 | Msa1447300:intron | 35.0% | |
| !! | TACAGTACAGCTCTAAAAGA+TGG | - | tig0031687:36387-36406 | Msa1447300:intron | 35.0% |
| !! | ACAGTACAGCTCTAAAAGAT+GGG | - | tig0031687:36388-36407 | Msa1447300:intron | 35.0% |
| CAGAGGTTATATATCCTTTG+AGG | + | tig0031687:36427-36446 | None:intergenic | 35.0% | |
| GTCACATACAAAAGAAGAAG+AGG | + | tig0031687:36482-36501 | None:intergenic | 35.0% | |
| ! | TTCTTCTTTTGTATGTGACC+TGG | - | tig0031687:36483-36502 | Msa1447300:intron | 35.0% |
| TGAGAGGAATAACAACAACT+TGG | - | tig0031687:36704-36723 | Msa1447300:CDS | 35.0% | |
| !! | TGAAATTGAATTGACTTGCC+AGG | - | tig0031687:36760-36779 | Msa1447300:CDS | 35.0% |
| CATAGAGTACATCAACTTCT+CGG | + | tig0031687:36825-36844 | None:intergenic | 35.0% | |
| !! | GAAGTTGATGTACTCTATGA+AGG | - | tig0031687:36826-36845 | Msa1447300:CDS | 35.0% |
| ! | AGTTGATGTACTCTATGAAG+GGG | - | tig0031687:36828-36847 | Msa1447300:CDS | 35.0% |
| ! | ATGGTGATTTTCCAGTTACT+GGG | - | tig0031687:36902-36921 | Msa1447300:intron | 35.0% |
| ! | TACTGGGTATTGTATGCATT+TGG | - | tig0031687:36918-36937 | Msa1447300:intron | 35.0% |
| ! | ACTCAGTAATTTTCTGCTAC+TGG | + | tig0031687:36983-37002 | None:intergenic | 35.0% |
| AAGGCGATTAACTTCAATGT+AGG | - | tig0031687:37056-37075 | Msa1447300:intron | 35.0% | |
| ! | GGTGTGCGAATCAATTATTT+TGG | + | tig0031687:37193-37212 | None:intergenic | 35.0% |
| ! | TCAGTTTAGGGTTCAAGAAG+TGG | + | tig0031687:33826-33845 | None:intergenic | 40.0% |
| TCCATCGTCACATCAGTTTA+GGG | + | tig0031687:33838-33857 | None:intergenic | 40.0% | |
| TTCCATCGTCACATCAGTTT+AGG | + | tig0031687:33839-33858 | None:intergenic | 40.0% | |
| TCTAGTGTTCCTGTTAATGG+GGG | - | tig0031687:34290-34309 | Msa1447300:intron | 40.0% | |
| CCATTATAACCCCCATTAAC+AGG | + | tig0031687:34302-34321 | None:intergenic | 40.0% | |
| CCTGTTAATGGGGGTTATAA+TGG | - | tig0031687:34299-34318 | Msa1447300:intron | 40.0% | |
| !! | TAATGGGGGTTATAATGGGT+TGG | - | tig0031687:34304-34323 | Msa1447300:intron | 40.0% |
| !! | AATGGGTTGGAACCATTTCA+TGG | - | tig0031687:34317-34336 | Msa1447300:intron | 40.0% |
| ACACACCAATCTGTAGAAGA+AGG | - | tig0031687:34371-34390 | Msa1447300:intron | 40.0% | |
| CACACCAATCTGTAGAAGAA+GGG | - | tig0031687:34372-34391 | Msa1447300:intron | 40.0% | |
| ACTTCCCTTCTTCTACAGAT+TGG | + | tig0031687:34379-34398 | None:intergenic | 40.0% | |
| ATCTGTAGAAGAAGGGAAGT+TGG | - | tig0031687:34379-34398 | Msa1447300:intron | 40.0% | |
| AAGAGGAGAGCTCTTACTTA+TGG | - | tig0031687:34420-34439 | Msa1447300:intron | 40.0% | |
| AGAGGAGAGCTCTTACTTAT+GGG | - | tig0031687:34421-34440 | Msa1447300:intron | 40.0% | |
| ! | GAGCTCTTACTTATGGGTTT+TGG | - | tig0031687:34427-34446 | Msa1447300:intron | 40.0% |
| AGTGTAGACAAAAAGAGCAG+CGG | + | tig0031687:34709-34728 | None:intergenic | 40.0% | |
| AAACTTTGAGCCCGTTTGTT+TGG | - | tig0031687:34900-34919 | Msa1447300:intron | 40.0% | |
| AACTTTGAGCCCGTTTGTTT+GGG | - | tig0031687:34901-34920 | Msa1447300:intron | 40.0% | |
| ! | CTAACAACAACTAGTGTTGG+TGG | + | tig0031687:35294-35313 | None:intergenic | 40.0% |
| GGCAAAACTTTGTGTTTCCA+TGG | - | tig0031687:35458-35477 | Msa1447300:intron | 40.0% | |
| TGTTTCCATGGTGTTCTGTT+GGG | - | tig0031687:35470-35489 | Msa1447300:intron | 40.0% | |
| ATGCGAACCTCAAAGACTAT+TGG | - | tig0031687:35748-35767 | Msa1447300:intron | 40.0% | |
| !! | TCTGCATTTCTAGTGCTTCT+TGG | - | tig0031687:35969-35988 | Msa1447300:intron | 40.0% |
| !! | CTGCATTTCTAGTGCTTCTT+GGG | - | tig0031687:35970-35989 | Msa1447300:intron | 40.0% |
| !! | TGCATTTCTAGTGCTTCTTG+GGG | - | tig0031687:35971-35990 | Msa1447300:intron | 40.0% |
| !! | GTTTTAGATGTAGACTCTCG+TGG | - | tig0031687:35993-36012 | Msa1447300:intron | 40.0% |
| ! | ACTTGCAACATTTTTGCAGG+TGG | - | tig0031687:36340-36359 | Msa1447300:intron | 40.0% |
| TGTACTGTAAATATGGCCTC+TGG | + | tig0031687:36376-36395 | None:intergenic | 40.0% | |
| !! | CAGTACAGCTCTAAAAGATG+GGG | - | tig0031687:36389-36408 | Msa1447300:intron | 40.0% |
| ! | CAATTTTCAAACCCGTTGTG+AGG | + | tig0031687:36454-36473 | None:intergenic | 40.0% |
| ! | TCTTTTGTATGTGACCTGGT+CGG | - | tig0031687:36487-36506 | Msa1447300:intron | 40.0% |
| !! | GCTATAGCTCCCTTTTTAGT+TGG | - | tig0031687:36533-36552 | Msa1447300:intron | 40.0% |
| GCTGATACAATCTGTATACC+TGG | + | tig0031687:36781-36800 | None:intergenic | 40.0% | |
| CATCAACTTCTCGGCAAAAT+TGG | + | tig0031687:36816-36835 | None:intergenic | 40.0% | |
| !! | TGGAGCTTTGTTTGGAATGA+TGG | - | tig0031687:36883-36902 | Msa1447300:CDS | 40.0% |
| ! | GATGGTGATTTTCCAGTTAC+TGG | - | tig0031687:36901-36920 | Msa1447300:intron | 40.0% |
| TGCATACAATACCCAGTAAC+TGG | + | tig0031687:36916-36935 | None:intergenic | 40.0% | |
| !! | CATTGATGACGTTTCTCTTG+AGG | - | tig0031687:36942-36961 | Msa1447300:intron | 40.0% |
| !! | GGAAGAGTGTTGTACATAGT+CGG | - | tig0031687:37017-37036 | Msa1447300:CDS | 40.0% |
| CGGAGCGGATAACATTTATA+AGG | - | tig0031687:37037-37056 | Msa1447300:CDS | 40.0% | |
| !! | AATAATTGATTCGCACACCG+TGG | - | tig0031687:37194-37213 | Msa1447300:CDS | 40.0% |
| TGAACCCTAACAACTTACCA+CGG | + | tig0031687:37214-37233 | None:intergenic | 40.0% | |
| ACCCTAAACTGATGTGACGA+TGG | - | tig0031687:33834-33853 | Msa1447300:three_prime_UTR | 45.0% | |
| GAGAAGTGAAGTGGTTGAGA+GGG | + | tig0031687:33886-33905 | None:intergenic | 45.0% | |
| CGATGTTTGGAGAAGTGAAG+TGG | + | tig0031687:33895-33914 | None:intergenic | 45.0% | |
| ATCTGCTCCGTTCAAACAAG+AGG | - | tig0031687:34403-34422 | Msa1447300:intron | 45.0% | |
| ! | GAGCTCTCCTCTTGTTTGAA+CGG | + | tig0031687:34413-34432 | None:intergenic | 45.0% |
| ATTCTGCCACAGTTCTTCGT+TGG | - | tig0031687:34476-34495 | Msa1447300:CDS | 45.0% | |
| ACTTTGGTAGGACACTGTTG+AGG | - | tig0031687:34726-34745 | Msa1447300:CDS | 45.0% | |
| GGAATGACTTTGTATGCTGG+AGG | + | tig0031687:34869-34888 | None:intergenic | 45.0% | |
| GTGTTTCCATGGTGTTCTGT+TGG | - | tig0031687:35469-35488 | Msa1447300:intron | 45.0% | |
| GTTTCCATGGTGTTCTGTTG+GGG | - | tig0031687:35471-35490 | Msa1447300:intron | 45.0% | |
| AAAACCCCAACAGAACACCA+TGG | + | tig0031687:35478-35497 | None:intergenic | 45.0% | |
| !! | TCAGTTCTGAAGCAAACCTC+TGG | - | tig0031687:35843-35862 | Msa1447300:intron | 45.0% |
| AGTGGTAAGTACAGAACCAG+AGG | + | tig0031687:35862-35881 | None:intergenic | 45.0% | |
| TGTGACTTCATTCTCTTCCG+AGG | - | tig0031687:36301-36320 | Msa1447300:intron | 45.0% | |
| ! | CGGACTTGCAACATTTTTGC+AGG | - | tig0031687:36337-36356 | Msa1447300:intron | 45.0% |
| AAAAGATGGGGTCTCATCAC+TGG | - | tig0031687:36401-36420 | Msa1447300:intron | 45.0% | |
| AACCTCTGCTTTCCTCACAA+CGG | - | tig0031687:36439-36458 | Msa1447300:intron | 45.0% | |
| GCAGCACAGCCAACTAAAAA+GGG | + | tig0031687:36545-36564 | None:intergenic | 45.0% | |
| AGCAGCACAGCCAACTAAAA+AGG | + | tig0031687:36546-36565 | None:intergenic | 45.0% | |
| AGAGACATTTGGACAGACGT+GGG | - | tig0031687:36579-36598 | Msa1447300:CDS | 45.0% | |
| CCACTTCGTTCTAGTACTTC+AGG | + | tig0031687:36866-36885 | None:intergenic | 45.0% | |
| ! | CCTGAAGTACTAGAACGAAG+TGG | - | tig0031687:36863-36882 | Msa1447300:CDS | 45.0% |
| !! | GAACGAAGTGGAGCTTTGTT+TGG | - | tig0031687:36875-36894 | Msa1447300:CDS | 45.0% |
| TCTTGAGGCTATTCCCTTCT+AGG | - | tig0031687:36957-36976 | Msa1447300:intron | 45.0% | |
| ! | TTTCTGCTACTGGCCTAGAA+GGG | + | tig0031687:36973-36992 | None:intergenic | 45.0% |
| !! | TTTTCTGCTACTGGCCTAGA+AGG | + | tig0031687:36974-36993 | None:intergenic | 45.0% |
| AGTGTTGTACATAGTCGGAG+CGG | - | tig0031687:37022-37041 | Msa1447300:CDS | 45.0% | |
| CACACCGTGGTAAGTTGTTA+GGG | - | tig0031687:37207-37226 | Msa1447300:exon | 45.0% | |
| GGAGAAGTGAAGTGGTTGAG+AGG | + | tig0031687:33887-33906 | None:intergenic | 50.0% | |
| CTTTCGCAGTCACAAGCAAC+TGG | - | tig0031687:34004-34023 | Msa1447300:three_prime_UTR | 50.0% | |
| ACAGTGCCAACGAAGAACTG+TGG | + | tig0031687:34485-34504 | None:intergenic | 50.0% | |
| CTTCGTTGGCACTGTTGTTG+CGG | - | tig0031687:34490-34509 | Msa1447300:CDS | 50.0% | |
| GGTGGTCAGTACAGAACTAG+AGG | + | tig0031687:35276-35295 | None:intergenic | 50.0% | |
| !! | TCCGAGGCACTGTTCTATGT+CGG | - | tig0031687:36317-36336 | Msa1447300:intron | 50.0% |
| TCCGACATAGAACAGTGCCT+CGG | + | tig0031687:36321-36340 | None:intergenic | 50.0% | |
| ACCTCTGCTTTCCTCACAAC+GGG | - | tig0031687:36440-36459 | Msa1447300:intron | 50.0% | |
| TTTGTATGTGACCTGGTCGG+TGG | - | tig0031687:36490-36509 | Msa1447300:intron | 50.0% | |
| GAGAGACATTTGGACAGACG+TGG | - | tig0031687:36578-36597 | Msa1447300:CDS | 50.0% | |
| ATGCAGCTTGACGAGTCTAC+TGG | - | tig0031687:36679-36698 | Msa1447300:CDS | 50.0% | |
| TCTAGTACTTCAGGTGACGC+AGG | + | tig0031687:36857-36876 | None:intergenic | 50.0% | |
| GCACACCGTGGTAAGTTGTT+AGG | - | tig0031687:37206-37225 | Msa1447300:exon | 50.0% | |
| ! | GGTCTCATCACTGGCCTCAA+AGG | - | tig0031687:36410-36429 | Msa1447300:intron | 55.0% |
| ACCCGTTGTGAGGAAAGCAG+AGG | + | tig0031687:36444-36463 | None:intergenic | 55.0% | |
| ! | GACGAGTCTACTGGTCTGAG+AGG | - | tig0031687:36688-36707 | Msa1447300:CDS | 55.0% |
| AGGTGGCTGATCGTGTCCAG+AGG | - | tig0031687:36357-36376 | Msa1447300:intron | 60.0% | |
| ACAGACGTGGGTCATCGTGC+TGG | - | tig0031687:36591-36610 | Msa1447300:CDS | 60.0% | |
| GACCTGGTCGGTGGTTCGCA+TGG | - | tig0031687:36499-36518 | Msa1447300:intron | 65.0% | |
| TGCCATGCGAACCACCGACC+AGG | + | tig0031687:36504-36523 | None:intergenic | 65.0% | |
| GTCGGTGGTTCGCATGGCAG+CGG | - | tig0031687:36505-36524 | Msa1447300:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0031687 | gene | 33771 | 37305 | 33771 | ID=Msa1447300;Name=Msa1447300 |
| tig0031687 | mRNA | 33771 | 37305 | 33771 | ID=Msa1447300-mRNA-1;Parent=Msa1447300;Name=Msa1447300-mRNA-1;_AED=0.08;_eAED=0.08;_QI=82|1|1|1|1|0.8|5|305|356 |
| tig0031687 | exon | 33771 | 34294 | 33771 | ID=Msa1447300-mRNA-1:exon:15858;Parent=Msa1447300-mRNA-1 |
| tig0031687 | exon | 34439 | 34779 | 34439 | ID=Msa1447300-mRNA-1:exon:15857;Parent=Msa1447300-mRNA-1 |
| tig0031687 | exon | 36537 | 36911 | 36537 | ID=Msa1447300-mRNA-1:exon:15856;Parent=Msa1447300-mRNA-1 |
| tig0031687 | exon | 36991 | 37063 | 36991 | ID=Msa1447300-mRNA-1:exon:15855;Parent=Msa1447300-mRNA-1 |
| tig0031687 | exon | 37161 | 37305 | 37161 | ID=Msa1447300-mRNA-1:exon:15854;Parent=Msa1447300-mRNA-1 |
| tig0031687 | five_prime_UTR | 37224 | 37305 | 37224 | ID=Msa1447300-mRNA-1:five_prime_utr;Parent=Msa1447300-mRNA-1 |
| tig0031687 | CDS | 37161 | 37223 | 37161 | ID=Msa1447300-mRNA-1:cds;Parent=Msa1447300-mRNA-1 |
| tig0031687 | CDS | 36991 | 37063 | 36991 | ID=Msa1447300-mRNA-1:cds;Parent=Msa1447300-mRNA-1 |
| tig0031687 | CDS | 36537 | 36911 | 36537 | ID=Msa1447300-mRNA-1:cds;Parent=Msa1447300-mRNA-1 |
| tig0031687 | CDS | 34439 | 34779 | 34439 | ID=Msa1447300-mRNA-1:cds;Parent=Msa1447300-mRNA-1 |
| tig0031687 | CDS | 34076 | 34294 | 34076 | ID=Msa1447300-mRNA-1:cds;Parent=Msa1447300-mRNA-1 |
| tig0031687 | three_prime_UTR | 33771 | 34075 | 33771 | ID=Msa1447300-mRNA-1:three_prime_utr;Parent=Msa1447300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
