Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460440 | XP_013462091.1 | 95.787 | 356 | 13 | 1 | 1 | 356 | 1 | 354 | 0.0 | 687 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460440 | A0A072V374 | 95.787 | 356 | 13 | 1 | 1 | 356 | 1 | 354 | 0.0 | 687 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001950 | Msa1460440 | 0.825126 | 5.557048e-54 | -8.615850e-47 |
| Msa0027540 | Msa1460440 | 0.803140 | 4.018031e-49 | -8.615850e-47 |
| Msa0030380 | Msa1460440 | 0.805112 | 1.562361e-49 | -8.615850e-47 |
| Msa0032120 | Msa1460440 | 0.832892 | 7.292611e-56 | -8.615850e-47 |
| Msa0032400 | Msa1460440 | 0.819664 | 1.031631e-52 | -8.615850e-47 |
| Msa0044710 | Msa1460440 | 0.809929 | 1.483927e-50 | -8.615850e-47 |
| Msa0050580 | Msa1460440 | 0.827419 | 1.580636e-54 | -8.615850e-47 |
| Msa0050720 | Msa1460440 | 0.800062 | 1.718911e-48 | -8.615850e-47 |
| Msa0056520 | Msa1460440 | 0.879944 | 8.235044e-70 | -8.615850e-47 |
| Msa0056690 | Msa1460440 | 0.879343 | 1.346146e-69 | -8.615850e-47 |
| Msa1375340 | Msa1460440 | 0.822179 | 2.720393e-53 | -8.615850e-47 |
| Msa1382310 | Msa1460440 | 0.829094 | 6.238984e-55 | -8.615850e-47 |
| Msa1387200 | Msa1460440 | 0.816970 | 4.202224e-52 | -8.615850e-47 |
| Msa1398480 | Msa1460440 | 0.843958 | 1.017205e-58 | -8.615850e-47 |
| Msa1447300 | Msa1460440 | 0.984215 | 6.439565e-160 | -8.615850e-47 |
| Msa1449880 | Msa1460440 | 0.851030 | 1.157088e-60 | -8.615850e-47 |
| Msa1453620 | Msa1460440 | 0.845561 | 3.760582e-59 | -8.615850e-47 |
| Msa0621120 | Msa1460440 | 0.864660 | 1.036245e-64 | -8.615850e-47 |
| Msa0639370 | Msa1460440 | 0.851549 | 8.257408e-61 | -8.615850e-47 |
| Msa0661240 | Msa1460440 | 0.868948 | 4.467053e-66 | -8.615850e-47 |
| Msa0669220 | Msa1460440 | 0.807274 | 5.477247e-50 | -8.615850e-47 |
| Msa0677290 | Msa1460440 | 0.826776 | 2.252961e-54 | -8.615850e-47 |
| Msa0688370 | Msa1460440 | 0.811084 | 8.354062e-51 | -8.615850e-47 |
| Msa0704220 | Msa1460440 | 0.804535 | 2.061774e-49 | -8.615850e-47 |
| Msa0727170 | Msa1460440 | 0.834429 | 3.013727e-56 | -8.615850e-47 |
| Msa0728280 | Msa1460440 | 0.817106 | 3.915676e-52 | -8.615850e-47 |
| Msa0728380 | Msa1460440 | 0.816689 | 4.857626e-52 | -8.615850e-47 |
| Msa0728540 | Msa1460440 | 0.823704 | 1.199981e-53 | -8.615850e-47 |
| Msa0746600 | Msa1460440 | 0.806287 | 8.852717e-50 | -8.615850e-47 |
| Msa0767520 | Msa1460440 | 0.872983 | 2.090397e-67 | -8.615850e-47 |
| Msa0769830 | Msa1460440 | 0.809616 | 1.732953e-50 | -8.615850e-47 |
| Msa0776480 | Msa1460440 | 0.817139 | 3.849843e-52 | -8.615850e-47 |
| Msa0816640 | Msa1460440 | 0.812074 | 5.090866e-51 | -8.615850e-47 |
| Msa0835520 | Msa1460440 | 0.848668 | 5.293889e-60 | -8.615850e-47 |
| Msa0166570 | Msa1460440 | 0.803488 | 3.403026e-49 | -8.615850e-47 |
| Msa0173740 | Msa1460440 | 0.806945 | 6.427334e-50 | -8.615850e-47 |
| Msa0173820 | Msa1460440 | 0.812545 | 4.018009e-51 | -8.615850e-47 |
| Msa0173830 | Msa1460440 | 0.823581 | 1.282599e-53 | -8.615850e-47 |
| Msa0182930 | Msa1460440 | 0.804024 | 2.634101e-49 | -8.615850e-47 |
| Msa0185700 | Msa1460440 | 0.838923 | 2.154879e-57 | -8.615850e-47 |
| Msa1235150 | Msa1460440 | 0.818421 | 1.978017e-52 | -8.615850e-47 |
| Msa1243170 | Msa1460440 | 0.825245 | 5.207161e-54 | -8.615850e-47 |
| Msa1284520 | Msa1460440 | 0.850448 | 1.687054e-60 | -8.615850e-47 |
| Msa1290200 | Msa1460440 | 0.816641 | 4.981113e-52 | -8.615850e-47 |
| Msa1306580 | Msa1460440 | 0.810285 | 1.243422e-50 | -8.615850e-47 |
| Msa1317030 | Msa1460440 | 0.883178 | 5.589058e-71 | -8.615850e-47 |
| Msa1324000 | Msa1460440 | 0.856778 | 2.556135e-62 | -8.615850e-47 |
| Msa0376510 | Msa1460440 | 0.802537 | 5.351417e-49 | -8.615850e-47 |
| Msa0378080 | Msa1460440 | 0.849147 | 3.897968e-60 | -8.615850e-47 |
| Msa0384430 | Msa1460440 | 0.965742 | 5.310182e-125 | -8.615850e-47 |
| Msa0384750 | Msa1460440 | 0.826440 | 2.709568e-54 | -8.615850e-47 |
| Msa0390060 | Msa1460440 | 0.876683 | 1.148527e-68 | -8.615850e-47 |
| Msa0392210 | Msa1460440 | 0.838004 | 3.720218e-57 | -8.615850e-47 |
| Msa0425050 | Msa1460440 | 0.809166 | 2.164527e-50 | -8.615850e-47 |
| Msa0425940 | Msa1460440 | 0.803733 | 3.028013e-49 | -8.615850e-47 |
| Msa0426160 | Msa1460440 | 0.805700 | 1.176324e-49 | -8.615850e-47 |
| Msa0443500 | Msa1460440 | 0.819229 | 1.295832e-52 | -8.615850e-47 |
| Msa0465790 | Msa1460440 | 0.806216 | 9.159912e-50 | -8.615850e-47 |
| Msa0468160 | Msa1460440 | 0.834612 | 2.710908e-56 | -8.615850e-47 |
| Msa0470180 | Msa1460440 | 0.856010 | 4.295521e-62 | -8.615850e-47 |
| Msa1072340 | Msa1460440 | 0.837027 | 6.622562e-57 | -8.615850e-47 |
| Msa0346980 | Msa1460440 | 0.821482 | 3.944871e-53 | -8.615850e-47 |
| Msa0349060 | Msa1460440 | 0.844989 | 5.372150e-59 | -8.615850e-47 |
| Msa0358170 | Msa1460440 | 0.845384 | 4.199634e-59 | -8.615850e-47 |
| Msa1111630 | Msa1460440 | 0.836261 | 1.037784e-56 | -8.615850e-47 |
| Msa1118150 | Msa1460440 | 0.839471 | 1.553275e-57 | -8.615850e-47 |
| Msa1159350 | Msa1460440 | 0.827117 | 1.867060e-54 | -8.615850e-47 |
| Msa1167170 | Msa1460440 | 0.825233 | 5.242378e-54 | -8.615850e-47 |
| Msa1177240 | Msa1460440 | 0.865966 | 4.023234e-65 | -8.615850e-47 |
| Msa1188940 | Msa1460440 | 0.853099 | 2.988749e-61 | -8.615850e-47 |
| Msa0487770 | Msa1460440 | 0.839725 | 1.334407e-57 | -8.615850e-47 |
| Msa0491020 | Msa1460440 | 0.830241 | 3.280749e-55 | -8.615850e-47 |
| Msa0518040 | Msa1460440 | 0.848678 | 5.257827e-60 | -8.615850e-47 |
| Msa0522660 | Msa1460440 | 0.980461 | 2.845184e-150 | -8.615850e-47 |
| Msa0546840 | Msa1460440 | 0.848382 | 6.352835e-60 | -8.615850e-47 |
| Msa0571610 | Msa1460440 | 0.816489 | 5.386536e-52 | -8.615850e-47 |
| Msa0583740 | Msa1460440 | 0.866864 | 2.086999e-65 | -8.615850e-47 |
| Msa0590680 | Msa1460440 | 0.805192 | 1.502816e-49 | -8.615850e-47 |
| Msa0847100 | Msa1460440 | 0.847255 | 1.298085e-59 | -8.615850e-47 |
| Msa0848760 | Msa1460440 | 0.807167 | 5.769603e-50 | -8.615850e-47 |
| Msa0880220 | Msa1460440 | 0.817408 | 3.350126e-52 | -8.615850e-47 |
| Msa0913090 | Msa1460440 | 0.821109 | 4.808067e-53 | -8.615850e-47 |
| Msa0950320 | Msa1460440 | 0.830923 | 2.233549e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460440 | MtrunA17_Chr3g0141281 | 95.787 | 356 | 13 | 1 | 1 | 356 | 1 | 354 | 0.0 | 687 |
| Msa1460440 | MtrunA17_Chr3g0117341 | 29.907 | 321 | 206 | 6 | 42 | 349 | 56 | 370 | 3.79e-46 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460440 | AT1G48460.1 | 60.584 | 274 | 104 | 1 | 83 | 356 | 71 | 340 | 6.14e-120 | 350 |
| Msa1460440 | AT1G48460.2 | 53.650 | 274 | 86 | 2 | 83 | 356 | 71 | 303 | 2.44e-98 | 294 |
| Msa1460440 | AT5G63040.2 | 29.762 | 336 | 222 | 5 | 13 | 346 | 35 | 358 | 1.16e-34 | 130 |
| Msa1460440 | AT5G63040.1 | 29.762 | 336 | 222 | 5 | 13 | 346 | 35 | 358 | 1.26e-34 | 130 |
Find 90 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGAGGCTATTCCCTTCT+AGG | 0.161760 | tig0040895:-4342 | Msa1460440:CDS |
| AGATATCAGAAACAGAATTT+TGG | 0.173325 | tig0040895:-6906 | Msa1460440:CDS |
| AGTTCTAGTGTTCCTGTTAA+TGG | 0.210562 | tig0040895:-6662 | Msa1460440:CDS |
| GAGCTCTTACTTATGGGTTT+TGG | 0.226459 | tig0040895:-6522 | Msa1460440:CDS |
| AGACAAACCTCAAATATAAT+AGG | 0.229602 | tig0040895:+4676 | None:intergenic |
| GCTTCTGATTCCAATGTAAA+TGG | 0.239192 | tig0040895:-6710 | Msa1460440:CDS |
| AGCAGCACAGCCAACTAAAA+AGG | 0.270995 | tig0040895:+4756 | None:intergenic |
| TTAGAGCTGTACTGTAAATA+TGG | 0.272745 | tig0040895:+4919 | None:intergenic |
| CATCAACTTCTCGGCAAAAT+TGG | 0.283065 | tig0040895:+4486 | None:intergenic |
| AAGAGGAGAGCTCTTACTTA+TGG | 0.285229 | tig0040895:-6529 | Msa1460440:CDS |
| TTCCATCGTCACATCAGTTT+AGG | 0.286689 | tig0040895:+7113 | None:intergenic |
| GTTCTAGTGTTCCTGTTAAT+GGG | 0.303684 | tig0040895:-6661 | Msa1460440:CDS |
| GAACCATTTCATGGTAAATC+AGG | 0.312758 | tig0040895:-6623 | Msa1460440:CDS |
| GCACACCGTGGTAAGTTGTT+AGG | 0.312996 | tig0040895:-4093 | Msa1460440:three_prime_UTR |
| TCCATCGTCACATCAGTTTA+GGG | 0.322289 | tig0040895:+7114 | None:intergenic |
| CTACATTTGTTGTGAGTAAA+GGG | 0.340887 | tig0040895:-7171 | Msa1460440:five_prime_UTR |
| GAACGAAGTGGAGCTTTGTT+TGG | 0.345152 | tig0040895:-4424 | Msa1460440:CDS |
| TGCATACAATACCCAGTAAC+TGG | 0.357271 | tig0040895:+4386 | None:intergenic |
| TTTATTACTGACACGATGTT+TGG | 0.357578 | tig0040895:+7044 | None:intergenic |
| GGTGTGCGAATCAATTATTT+TGG | 0.360901 | tig0040895:+4109 | None:intergenic |
| CCACTTCGTTCTAGTACTTC+AGG | 0.361982 | tig0040895:+4436 | None:intergenic |
| TCTAGTCCCTATTATATTTG+AGG | 0.362027 | tig0040895:-4683 | Msa1460440:intron |
| ATTTGCATTTGAGAGACATT+TGG | 0.369154 | tig0040895:-4731 | Msa1460440:CDS |
| AATGGGTTGGAACCATTTCA+TGG | 0.370157 | tig0040895:-6632 | Msa1460440:CDS |
| TACTGGGTATTGTATGCATT+TGG | 0.376974 | tig0040895:-4381 | Msa1460440:CDS |
| CTTTCGCAGTCACAAGCAAC+TGG | 0.380671 | tig0040895:-6945 | Msa1460440:intron |
| TTCCAATGTAAATGGTTCAT+TGG | 0.384931 | tig0040895:-6702 | Msa1460440:CDS |
| TGGAGCTTTGTTTGGAATGA+TGG | 0.401307 | tig0040895:-4416 | Msa1460440:CDS |
| CACACCGTGGTAAGTTGTTA+GGG | 0.409549 | tig0040895:-4092 | Msa1460440:three_prime_UTR |
| GAACCTGATTTACCATGAAA+TGG | 0.410530 | tig0040895:+6620 | None:intergenic |
| ACTACATTTGTTGTGAGTAA+AGG | 0.411169 | tig0040895:-7172 | Msa1460440:five_prime_UTR |
| ACCTCTGCTTTCCTCACAAC+GGG | 0.412478 | tig0040895:-4859 | Msa1460440:CDS |
| AGAGGAGAGCTCTTACTTAT+GGG | 0.413551 | tig0040895:-6528 | Msa1460440:CDS |
| CGGAGCGGATAACATTTATA+AGG | 0.421430 | tig0040895:-4262 | Msa1460440:three_prime_UTR |
| AAAGATGATATGAATGCAAC+AGG | 0.422615 | tig0040895:+6497 | None:intergenic |
| GACAAACCTCAAATATAATA+GGG | 0.437022 | tig0040895:+4677 | None:intergenic |
| GAGAAGTGAAGTGGTTGAGA+GGG | 0.440340 | tig0040895:+7066 | None:intergenic |
| TACAGTACAGCTCTAAAAGA+TGG | 0.450227 | tig0040895:-4912 | Msa1460440:CDS |
| CATAGAGTACATCAACTTCT+CGG | 0.455751 | tig0040895:+4477 | None:intergenic |
| AAAAGATGGGGTCTCATCAC+TGG | 0.458268 | tig0040895:-4898 | Msa1460440:CDS |
| ACTTCCCTTCTTCTACAGAT+TGG | 0.459140 | tig0040895:+6573 | None:intergenic |
| AAGGCGATTAACTTCAATGT+AGG | 0.460653 | tig0040895:-4243 | Msa1460440:three_prime_UTR |
| TTTGATTTCAGCATTCAAAC+AGG | 0.466305 | tig0040895:-6795 | Msa1460440:intron |
| TTCCAATGAACCATTTACAT+TGG | 0.468010 | tig0040895:+6700 | None:intergenic |
| GAAGTTGATGTACTCTATGA+AGG | 0.469649 | tig0040895:-4473 | Msa1460440:CDS |
| CAGAGGTTATATATCCTTTG+AGG | 0.492149 | tig0040895:+4875 | None:intergenic |
| GGAGAAGTGAAGTGGTTGAG+AGG | 0.505328 | tig0040895:+7065 | None:intergenic |
| CATTGATGACGTTTCTCTTG+AGG | 0.505870 | tig0040895:-4357 | Msa1460440:CDS |
| ACAGTACAGCTCTAAAAGAT+GGG | 0.516922 | tig0040895:-4911 | Msa1460440:CDS |
| GTCGGTGGTTCGCATGGCAG+CGG | 0.518805 | tig0040895:-4794 | Msa1460440:CDS |
| ACAGACGTGGGTCATCGTGC+TGG | 0.519318 | tig0040895:-4708 | Msa1460440:CDS |
| ATTCTGCCACAGTTCTTCGT+TGG | 0.519550 | tig0040895:-6473 | Msa1460440:CDS |
| ATCTGTAGAAGAAGGGAAGT+TGG | 0.519792 | tig0040895:-6570 | Msa1460440:CDS |
| TCAGTTTAGGGTTCAAGAAG+TGG | 0.524196 | tig0040895:+7126 | None:intergenic |
| CTTCGTTGGCACTGTTGTTG+CGG | 0.536995 | tig0040895:-6459 | Msa1460440:CDS |
| ACACACCAATCTGTAGAAGA+AGG | 0.538353 | tig0040895:-6578 | Msa1460440:CDS |
| TTCTAGTGTTCCTGTTAATG+GGG | 0.540217 | tig0040895:-6660 | Msa1460440:CDS |
| GGTCTCATCACTGGCCTCAA+AGG | 0.549169 | tig0040895:-4889 | Msa1460440:CDS |
| GAGCTCTCCTCTTGTTTGAA+CGG | 0.557951 | tig0040895:+6539 | None:intergenic |
| GTCACATACAAAAGAAGAAG+AGG | 0.559688 | tig0040895:+4820 | None:intergenic |
| GACCTGGTCGGTGGTTCGCA+TGG | 0.562381 | tig0040895:-4800 | Msa1460440:CDS |
| TGCCATGCGAACCACCGACC+AGG | 0.563381 | tig0040895:+4798 | None:intergenic |
| TGTACTGTAAATATGGCCTC+TGG | 0.563744 | tig0040895:+4926 | None:intergenic |
| GGAAGAGTGTTGTACATAGT+CGG | 0.575600 | tig0040895:-4282 | Msa1460440:three_prime_UTR |
| AAGTTGATGTACTCTATGAA+GGG | 0.577690 | tig0040895:-4472 | Msa1460440:CDS |
| TCCGAGGCACTGTTCTATGT+CGG | 0.580851 | tig0040895:-4982 | Msa1460440:CDS |
| ATCTGCTCCGTTCAAACAAG+AGG | 0.588809 | tig0040895:-6546 | Msa1460440:CDS |
| GAGAGACATTTGGACAGACG+TGG | 0.588933 | tig0040895:-4721 | Msa1460440:CDS |
| TTTCTGCTACTGGCCTAGAA+GGG | 0.597512 | tig0040895:+4329 | None:intergenic |
| TCAAATATAATAGGGACTAG+AGG | 0.608339 | tig0040895:+4685 | None:intergenic |
| CACACCAATCTGTAGAAGAA+GGG | 0.610794 | tig0040895:-6577 | Msa1460440:CDS |
| TGTGACTTCATTCTCTTCCG+AGG | 0.611821 | tig0040895:-4998 | Msa1460440:CDS |
| AACCTCTGCTTTCCTCACAA+CGG | 0.613720 | tig0040895:-4860 | Msa1460440:CDS |
| TCTAGTGTTCCTGTTAATGG+GGG | 0.617974 | tig0040895:-6659 | Msa1460440:CDS |
| AGTTGATGTACTCTATGAAG+GGG | 0.619565 | tig0040895:-4471 | Msa1460440:CDS |
| TCCGACATAGAACAGTGCCT+CGG | 0.628444 | tig0040895:+4981 | None:intergenic |
| AGGTGGCTGATCGTGTCCAG+AGG | 0.630587 | tig0040895:-4942 | Msa1460440:CDS |
| TCTAGTACTTCAGGTGACGC+AGG | 0.632274 | tig0040895:+4445 | None:intergenic |
| TTTGTATGTGACCTGGTCGG+TGG | 0.632802 | tig0040895:-4809 | Msa1460440:CDS |
| CGATGTTTGGAGAAGTGAAG+TGG | 0.648063 | tig0040895:+7057 | None:intergenic |
| CCTGAAGTACTAGAACGAAG+TGG | 0.656210 | tig0040895:-4436 | Msa1460440:CDS |
| CAGTACAGCTCTAAAAGATG+GGG | 0.663248 | tig0040895:-4910 | Msa1460440:CDS |
| AGAGACATTTGGACAGACGT+GGG | 0.672518 | tig0040895:-4720 | Msa1460440:CDS |
| ATACAAAAGAAGAAGAGGAA+CGG | 0.679901 | tig0040895:+4825 | None:intergenic |
| TGAACCCTAACAACTTACCA+CGG | 0.681279 | tig0040895:+4088 | None:intergenic |
| ACCCTAAACTGATGTGACGA+TGG | 0.681521 | tig0040895:-7115 | Msa1460440:exon |
| ACCCGTTGTGAGGAAAGCAG+AGG | 0.694025 | tig0040895:+4858 | None:intergenic |
| ACAGTGCCAACGAAGAACTG+TGG | 0.710210 | tig0040895:+6467 | None:intergenic |
| AATAATTGATTCGCACACCG+TGG | 0.717711 | tig0040895:-4105 | Msa1460440:three_prime_UTR |
| AGTGTTGTACATAGTCGGAG+CGG | 0.720519 | tig0040895:-4277 | Msa1460440:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATGATTTGATTTTAAA+AGG | - | tig0040895:4763-4782 | Msa1460440:CDS | 10.0% |
| !!! | ATTTATAACAATTTGTTGAA+TGG | + | tig0040895:4372-4391 | None:intergenic | 15.0% |
| !!! | GAAATTATTTTGTTTACTTA+AGG | + | tig0040895:5700-5719 | None:intergenic | 15.0% |
| !!! | AAATGTACGATTTTTGTTTT+TGG | - | tig0040895:4327-4346 | Msa1460440:CDS | 20.0% |
| !!! | AATGTACGATTTTTGTTTTT+GGG | - | tig0040895:4328-4347 | Msa1460440:CDS | 20.0% |
| !!! | ATTAAAGAACCTTCATTTTT+GGG | - | tig0040895:4424-4443 | Msa1460440:CDS | 20.0% |
| !! | CTTTGATAAAACTTAATGAA+AGG | + | tig0040895:5090-5109 | None:intergenic | 20.0% |
| !!! | CAGAATTTTATTTTACTTGT+CGG | + | tig0040895:5413-5432 | None:intergenic | 20.0% |
| !!! | ATGATAATTGTTTTTGTTGT+AGG | - | tig0040895:5452-5471 | Msa1460440:intron | 20.0% |
| !! | TATAAAGCCAATAACTAATT+CGG | + | tig0040895:5608-5627 | None:intergenic | 20.0% |
| !!! | AAAGACATTGTTTATTTTCT+CGG | + | tig0040895:7043-7062 | None:intergenic | 20.0% |
| ! | AAGAAGAAAAAAAGTTAGTG+TGG | + | tig0040895:4229-4248 | None:intergenic | 25.0% |
| !! | AGATATCAGAAACAGAATTT+TGG | - | tig0040895:4288-4307 | Msa1460440:three_prime_UTR | 25.0% |
| !! | GATATCAGAAACAGAATTTT+GGG | - | tig0040895:4289-4308 | Msa1460440:three_prime_UTR | 25.0% |
| !! | GATTAAAGAACCTTCATTTT+TGG | - | tig0040895:4423-4442 | Msa1460440:CDS | 25.0% |
| !!! | TTTTTCAATCCCAAAAATGA+AGG | + | tig0040895:4436-4455 | None:intergenic | 25.0% |
| ! | TGGGATTGAAAAAATTTCAA+AGG | - | tig0040895:4443-4462 | Msa1460440:CDS | 25.0% |
| ! | GTTAATGCCAAATTATTTAG+TGG | - | tig0040895:5011-5030 | Msa1460440:intron | 25.0% |
| ! | CCATTCATAATTACAAAACA+TGG | + | tig0040895:5227-5246 | None:intergenic | 25.0% |
| !! | CCATGTTTTGTAATTATGAA+TGG | - | tig0040895:5224-5243 | Msa1460440:intron | 25.0% |
| !! | TATTTTACTTGTCGGAAATT+CGG | + | tig0040895:5405-5424 | None:intergenic | 25.0% |
| !!! | ATATTCTGGTTGTTATTTCA+CGG | + | tig0040895:5486-5505 | None:intergenic | 25.0% |
| ! | ATCAGCAATATAAACACATT+AGG | + | tig0040895:5521-5540 | None:intergenic | 25.0% |
| ! | TATATGGTAGTATGTTGTTA+AGG | - | tig0040895:5562-5581 | Msa1460440:intron | 25.0% |
| ! | GTTAATACCGAATTAGTTAT+TGG | - | tig0040895:5598-5617 | Msa1460440:intron | 25.0% |
| !!! | ACTATTTGTTGTTATCTTTG+TGG | - | tig0040895:5780-5799 | Msa1460440:intron | 25.0% |
| ! | CCATTCATAATTTCAAAACA+TGG | + | tig0040895:5814-5833 | None:intergenic | 25.0% |
| !!! | CCATGTTTTGAAATTATGAA+TGG | - | tig0040895:5811-5830 | Msa1460440:intron | 25.0% |
| !! | TTTATGTAACTCCATTCTTT+TGG | + | tig0040895:6086-6105 | None:intergenic | 25.0% |
| ! | AAAAGAATGGAGTTACATAA+AGG | - | tig0040895:6085-6104 | Msa1460440:intron | 25.0% |
| !! | TCACAATATCTGCATTTTAT+TGG | + | tig0040895:6181-6200 | None:intergenic | 25.0% |
| ! | GACAAACCTCAAATATAATA+GGG | + | tig0040895:6520-6539 | None:intergenic | 25.0% |
| ! | AGACAAACCTCAAATATAAT+AGG | + | tig0040895:6521-6540 | None:intergenic | 25.0% |
| !!! | GAAAATTACTGAGTTTTGTA+TGG | - | tig0040895:6884-6903 | Msa1460440:intron | 25.0% |
| !! | ACTACATTTGTTGTGAGTAA+AGG | - | tig0040895:4022-4041 | Msa1460440:three_prime_UTR | 30.0% |
| !! | CTACATTTGTTGTGAGTAAA+GGG | - | tig0040895:4023-4042 | Msa1460440:three_prime_UTR | 30.0% |
| TTTATTACTGACACGATGTT+TGG | + | tig0040895:4153-4172 | None:intergenic | 30.0% | |
| ! | TTTGATTTCAGCATTCAAAC+AGG | - | tig0040895:4399-4418 | Msa1460440:CDS | 30.0% |
| TTCCAATGTAAATGGTTCAT+TGG | - | tig0040895:4492-4511 | Msa1460440:CDS | 30.0% | |
| TTCCAATGAACCATTTACAT+TGG | + | tig0040895:4497-4516 | None:intergenic | 30.0% | |
| AAAGATGATATGAATGCAAC+AGG | + | tig0040895:4700-4719 | None:intergenic | 30.0% | |
| ! | AATTTAAAGCACAGAACAGA+AGG | + | tig0040895:4837-4856 | None:intergenic | 30.0% |
| ! | TTCTGTTCTGTGCTTTAAAT+TGG | - | tig0040895:4836-4855 | Msa1460440:CDS | 30.0% |
| CATCAAGCCACTAAATAATT+TGG | + | tig0040895:5021-5040 | None:intergenic | 30.0% | |
| TGAAAGGATCAATTATCAAC+AGG | + | tig0040895:5074-5093 | None:intergenic | 30.0% | |
| !! | TTAAGTTTTATCAAAGCCTC+CGG | - | tig0040895:5094-5113 | Msa1460440:intron | 30.0% |
| AAAGAAATGACTTTGTATGC+CGG | + | tig0040895:5116-5135 | None:intergenic | 30.0% | |
| AAGAGTTATACAACAAACAG+AGG | + | tig0040895:5323-5342 | None:intergenic | 30.0% | |
| !! | TCTGTTTGTTGTATAACTCT+TGG | - | tig0040895:5322-5341 | Msa1460440:intron | 30.0% |
| !! | CTGTTTGTTGTATAACTCTT+GGG | - | tig0040895:5323-5342 | Msa1460440:intron | 30.0% |
| AGTTCTTTGTCTACACTATA+TGG | - | tig0040895:5546-5565 | Msa1460440:intron | 30.0% | |
| TCAATTACCAATAGTCTTTG+AGG | + | tig0040895:5653-5672 | None:intergenic | 30.0% | |
| ! | CAAAGACTATTGGTAATTGA+TGG | - | tig0040895:5653-5672 | Msa1460440:intron | 30.0% |
| ATAACAACAAATAGTGTCAG+TGG | + | tig0040895:5775-5794 | None:intergenic | 30.0% | |
| AGAAATGCAGAGAAATTCAA+GGG | + | tig0040895:5855-5874 | None:intergenic | 30.0% | |
| TAGAAATGCAGAGAAATTCA+AGG | + | tig0040895:5856-5875 | None:intergenic | 30.0% | |
| TGAGTTCTCACTAACATATA+TGG | - | tig0040895:5934-5953 | Msa1460440:intron | 30.0% | |
| ! | TGTATACCTTTTAGCGATTT+TGG | - | tig0040895:5980-5999 | Msa1460440:intron | 30.0% |
| ! | ATTTTGCCAAAATCGCTAAA+AGG | + | tig0040895:5989-6008 | None:intergenic | 30.0% |
| GAAATTCTGTTCCAAAAGAA+TGG | - | tig0040895:6072-6091 | Msa1460440:intron | 30.0% | |
| ! | TTTGTTTGTGCTGTTAAATG+TGG | - | tig0040895:6115-6134 | Msa1460440:intron | 30.0% |
| TTAGAGCTGTACTGTAAATA+TGG | + | tig0040895:6278-6297 | None:intergenic | 30.0% | |
| ATACAAAAGAAGAAGAGGAA+CGG | + | tig0040895:6372-6391 | None:intergenic | 30.0% | |
| ATTTGCATTTGAGAGACATT+TGG | - | tig0040895:6463-6482 | Msa1460440:CDS | 30.0% | |
| TCAAATATAATAGGGACTAG+AGG | + | tig0040895:6512-6531 | None:intergenic | 30.0% | |
| TCTAGTCCCTATTATATTTG+AGG | - | tig0040895:6511-6530 | Msa1460440:CDS | 30.0% | |
| !! | AAGTTGATGTACTCTATGAA+GGG | - | tig0040895:6722-6741 | Msa1460440:CDS | 30.0% |
| !! | TACTGAGTTTTGTATGGAAT+TGG | - | tig0040895:6890-6909 | Msa1460440:CDS | 30.0% |
| !! | ACTGAGTTTTGTATGGAATT+GGG | - | tig0040895:6891-6910 | Msa1460440:CDS | 30.0% |
| !!! | TATTTTGGCTGTAAACAAAC+AGG | + | tig0040895:7073-7092 | None:intergenic | 30.0% |
| ! | TGTTGTGAGTAAAGGGTTTT+AGG | - | tig0040895:4030-4049 | Msa1460440:three_prime_UTR | 35.0% |
| GCTTCTGATTCCAATGTAAA+TGG | - | tig0040895:4484-4503 | Msa1460440:CDS | 35.0% | |
| ! | AGTTCTAGTGTTCCTGTTAA+TGG | - | tig0040895:4532-4551 | Msa1460440:intron | 35.0% |
| GTTCTAGTGTTCCTGTTAAT+GGG | - | tig0040895:4533-4552 | Msa1460440:intron | 35.0% | |
| TTCTAGTGTTCCTGTTAATG+GGG | - | tig0040895:4534-4553 | Msa1460440:intron | 35.0% | |
| CTGTTAATGGGGGTTATAAT+GGG | - | tig0040895:4545-4564 | Msa1460440:intron | 35.0% | |
| GAACCATTTCATGGTAAATC+AGG | - | tig0040895:4571-4590 | Msa1460440:intron | 35.0% | |
| GAACCTGATTTACCATGAAA+TGG | + | tig0040895:4577-4596 | None:intergenic | 35.0% | |
| ! | TCAGGTTCTGTCTCTTTTTA+TGG | - | tig0040895:4589-4608 | Msa1460440:intron | 35.0% |
| ! | CAGGTTCTGTCTCTTTTTAT+GGG | - | tig0040895:4590-4609 | Msa1460440:intron | 35.0% |
| ! | GTTCTGTGCTTTAAATTGGA+TGG | - | tig0040895:4840-4859 | Msa1460440:CDS | 35.0% |
| ! | TGCTCTTTTTGTCTACACTT+CGG | - | tig0040895:4954-4973 | Msa1460440:CDS | 35.0% |
| TCAATTATCAACAGGCTTTG+AGG | + | tig0040895:5066-5085 | None:intergenic | 35.0% | |
| AAGCTAACAACAACTAGTGT+TGG | + | tig0040895:5191-5210 | None:intergenic | 35.0% | |
| !! | ACTAGTTGTTGTTAGCTTTG+TGG | - | tig0040895:5193-5212 | Msa1460440:intron | 35.0% |
| TCTCACTCAGATAACATACA+TGG | - | tig0040895:5281-5300 | Msa1460440:intron | 35.0% | |
| TGTATAACTCTTGGGTATCT+TGG | - | tig0040895:5331-5350 | Msa1460440:intron | 35.0% | |
| GGAACAGCAATCATATATTC+TGG | + | tig0040895:5500-5519 | None:intergenic | 35.0% | |
| GAAATGCAGAGAAATTCAAG+GGG | + | tig0040895:5854-5873 | None:intergenic | 35.0% | |
| GTTCTCACTAACATATATGG+AGG | - | tig0040895:5937-5956 | Msa1460440:intron | 35.0% | |
| GTGTTTCCACGTTATTCTAT+CGG | - | tig0040895:6012-6031 | Msa1460440:intron | 35.0% | |
| ACAAATCCGATAGAATAACG+TGG | + | tig0040895:6021-6040 | None:intergenic | 35.0% | |
| ATGGAGTTACATAAAGGTCA+TGG | - | tig0040895:6091-6110 | Msa1460440:intron | 35.0% | |
| !! | TACAGTACAGCTCTAAAAGA+TGG | - | tig0040895:6282-6301 | Msa1460440:intron | 35.0% |
| !! | ACAGTACAGCTCTAAAAGAT+GGG | - | tig0040895:6283-6302 | Msa1460440:intron | 35.0% |
| CAGAGGTTATATATCCTTTG+AGG | + | tig0040895:6322-6341 | None:intergenic | 35.0% | |
| GTCACATACAAAAGAAGAAG+AGG | + | tig0040895:6377-6396 | None:intergenic | 35.0% | |
| ! | TTCTTCTTTTGTATGTGACC+TGG | - | tig0040895:6378-6397 | Msa1460440:intron | 35.0% |
| TGAGAGGAATAACAACAACT+TGG | - | tig0040895:6599-6618 | Msa1460440:CDS | 35.0% | |
| !! | TGAAATTGAATTGACTTGCC+AGG | - | tig0040895:6655-6674 | Msa1460440:CDS | 35.0% |
| CATAGAGTACATCAACTTCT+CGG | + | tig0040895:6720-6739 | None:intergenic | 35.0% | |
| !! | GAAGTTGATGTACTCTATGA+AGG | - | tig0040895:6721-6740 | Msa1460440:CDS | 35.0% |
| ! | AGTTGATGTACTCTATGAAG+GGG | - | tig0040895:6723-6742 | Msa1460440:CDS | 35.0% |
| ! | ATGGTGATTTTCCAGTTACT+GGG | - | tig0040895:6797-6816 | Msa1460440:intron | 35.0% |
| ! | TACTGGGTATTGTATGCATT+TGG | - | tig0040895:6813-6832 | Msa1460440:intron | 35.0% |
| ! | ACTCAGTAATTTTCTGCTAC+TGG | + | tig0040895:6878-6897 | None:intergenic | 35.0% |
| AAGGCGATTAACTTCAATGT+AGG | - | tig0040895:6951-6970 | Msa1460440:intron | 35.0% | |
| ! | GGTGTGCGAATCAATTATTT+TGG | + | tig0040895:7088-7107 | None:intergenic | 35.0% |
| !!! | TGAGTAAAGGGTTTTAGGAG+CGG | - | tig0040895:4035-4054 | Msa1460440:three_prime_UTR | 40.0% |
| ! | TCAGTTTAGGGTTCAAGAAG+TGG | + | tig0040895:4071-4090 | None:intergenic | 40.0% |
| TCCATCGTCACATCAGTTTA+GGG | + | tig0040895:4083-4102 | None:intergenic | 40.0% | |
| TTCCATCGTCACATCAGTTT+AGG | + | tig0040895:4084-4103 | None:intergenic | 40.0% | |
| TCTAGTGTTCCTGTTAATGG+GGG | - | tig0040895:4535-4554 | Msa1460440:intron | 40.0% | |
| CCATTATAACCCCCATTAAC+AGG | + | tig0040895:4547-4566 | None:intergenic | 40.0% | |
| CCTGTTAATGGGGGTTATAA+TGG | - | tig0040895:4544-4563 | Msa1460440:intron | 40.0% | |
| !! | TAATGGGGGTTATAATGGGT+TGG | - | tig0040895:4549-4568 | Msa1460440:intron | 40.0% |
| !! | AATGGGTTGGAACCATTTCA+TGG | - | tig0040895:4562-4581 | Msa1460440:intron | 40.0% |
| ACACACCAATCTGTAGAAGA+AGG | - | tig0040895:4616-4635 | Msa1460440:intron | 40.0% | |
| CACACCAATCTGTAGAAGAA+GGG | - | tig0040895:4617-4636 | Msa1460440:intron | 40.0% | |
| ACTTCCCTTCTTCTACAGAT+TGG | + | tig0040895:4624-4643 | None:intergenic | 40.0% | |
| ATCTGTAGAAGAAGGGAAGT+TGG | - | tig0040895:4624-4643 | Msa1460440:intron | 40.0% | |
| AAGAGGAGAGCTCTTACTTA+TGG | - | tig0040895:4665-4684 | Msa1460440:intron | 40.0% | |
| AGAGGAGAGCTCTTACTTAT+GGG | - | tig0040895:4666-4685 | Msa1460440:intron | 40.0% | |
| ! | GAGCTCTTACTTATGGGTTT+TGG | - | tig0040895:4672-4691 | Msa1460440:intron | 40.0% |
| AGTGTAGACAAAAAGAGCAG+CGG | + | tig0040895:4953-4972 | None:intergenic | 40.0% | |
| ! | CTTTTTGTCTACACTTCGGT+AGG | - | tig0040895:4958-4977 | Msa1460440:CDS | 40.0% |
| ! | CTAACAACAACTAGTGTTGG+TGG | + | tig0040895:5188-5207 | None:intergenic | 40.0% |
| GGCAAAACTTTGTGTTTCCA+TGG | - | tig0040895:5352-5371 | Msa1460440:intron | 40.0% | |
| TGTTTCCATGGTGTTCTGTT+GGG | - | tig0040895:5364-5383 | Msa1460440:intron | 40.0% | |
| ATGCGAACCTCAAAGACTAT+TGG | - | tig0040895:5643-5662 | Msa1460440:intron | 40.0% | |
| !! | TCTGCATTTCTAGTGCTTCT+TGG | - | tig0040895:5864-5883 | Msa1460440:intron | 40.0% |
| !! | CTGCATTTCTAGTGCTTCTT+GGG | - | tig0040895:5865-5884 | Msa1460440:intron | 40.0% |
| !! | TGCATTTCTAGTGCTTCTTG+GGG | - | tig0040895:5866-5885 | Msa1460440:intron | 40.0% |
| !! | GTTTTAGATGTAGACTCTCG+TGG | - | tig0040895:5888-5907 | Msa1460440:intron | 40.0% |
| ! | CGCTAAAAGGTATACAGCAA+AGG | + | tig0040895:5976-5995 | None:intergenic | 40.0% |
| ! | ACTTGCAACATTTTTGCAGG+TGG | - | tig0040895:6235-6254 | Msa1460440:intron | 40.0% |
| TGTACTGTAAATATGGCCTC+TGG | + | tig0040895:6271-6290 | None:intergenic | 40.0% | |
| !! | CAGTACAGCTCTAAAAGATG+GGG | - | tig0040895:6284-6303 | Msa1460440:intron | 40.0% |
| ! | CAATTTTCAAACCCGTTGTG+AGG | + | tig0040895:6349-6368 | None:intergenic | 40.0% |
| ! | TCTTTTGTATGTGACCTGGT+CGG | - | tig0040895:6382-6401 | Msa1460440:intron | 40.0% |
| !! | GCTATAGCTCCCTTTTTAGT+TGG | - | tig0040895:6428-6447 | Msa1460440:intron | 40.0% |
| GCTGATACAATCTGTATACC+TGG | + | tig0040895:6676-6695 | None:intergenic | 40.0% | |
| CATCAACTTCTCGGCAAAAT+TGG | + | tig0040895:6711-6730 | None:intergenic | 40.0% | |
| !! | TGGAGCTTTGTTTGGAATGA+TGG | - | tig0040895:6778-6797 | Msa1460440:CDS | 40.0% |
| ! | GATGGTGATTTTCCAGTTAC+TGG | - | tig0040895:6796-6815 | Msa1460440:intron | 40.0% |
| TGCATACAATACCCAGTAAC+TGG | + | tig0040895:6811-6830 | None:intergenic | 40.0% | |
| !! | CATTGATGACGTTTCTCTTG+AGG | - | tig0040895:6837-6856 | Msa1460440:intron | 40.0% |
| !! | GGAAGAGTGTTGTACATAGT+CGG | - | tig0040895:6912-6931 | Msa1460440:CDS | 40.0% |
| CGGAGCGGATAACATTTATA+AGG | - | tig0040895:6932-6951 | Msa1460440:CDS | 40.0% | |
| !! | AATAATTGATTCGCACACCG+TGG | - | tig0040895:7089-7108 | Msa1460440:CDS | 40.0% |
| TGAACCCTAACAACTTACCA+CGG | + | tig0040895:7109-7128 | None:intergenic | 40.0% | |
| ACCCTAAACTGATGTGACGA+TGG | - | tig0040895:4079-4098 | Msa1460440:three_prime_UTR | 45.0% | |
| GAGAAGTGAAGTGGTTGAGA+GGG | + | tig0040895:4131-4150 | None:intergenic | 45.0% | |
| CGATGTTTGGAGAAGTGAAG+TGG | + | tig0040895:4140-4159 | None:intergenic | 45.0% | |
| ATCTGCTCCGTTCAAACAAG+AGG | - | tig0040895:4648-4667 | Msa1460440:intron | 45.0% | |
| ! | GAGCTCTCCTCTTGTTTGAA+CGG | + | tig0040895:4658-4677 | None:intergenic | 45.0% |
| ATTCTGCCACAGTTCTTCGT+TGG | - | tig0040895:4721-4740 | Msa1460440:CDS | 45.0% | |
| GAAATGACTTTGTATGCCGG+AGG | + | tig0040895:5113-5132 | None:intergenic | 45.0% | |
| GTGTTTCCATGGTGTTCTGT+TGG | - | tig0040895:5363-5382 | Msa1460440:intron | 45.0% | |
| GTTTCCATGGTGTTCTGTTG+GGG | - | tig0040895:5365-5384 | Msa1460440:intron | 45.0% | |
| AAAACCCCAACAGAACACCA+TGG | + | tig0040895:5372-5391 | None:intergenic | 45.0% | |
| !! | TCAGTTCTGAAGCAAACCTC+TGG | - | tig0040895:5738-5757 | Msa1460440:intron | 45.0% |
| AGTGGTAAGTACAGAACCAG+AGG | + | tig0040895:5757-5776 | None:intergenic | 45.0% | |
| TGTGACTTCATTCTCTTCCG+AGG | - | tig0040895:6196-6215 | Msa1460440:intron | 45.0% | |
| ! | CGGACTTGCAACATTTTTGC+AGG | - | tig0040895:6232-6251 | Msa1460440:intron | 45.0% |
| AAAAGATGGGGTCTCATCAC+TGG | - | tig0040895:6296-6315 | Msa1460440:intron | 45.0% | |
| AACCTCTGCTTTCCTCACAA+CGG | - | tig0040895:6334-6353 | Msa1460440:intron | 45.0% | |
| GCAGCACAGCCAACTAAAAA+GGG | + | tig0040895:6440-6459 | None:intergenic | 45.0% | |
| AGCAGCACAGCCAACTAAAA+AGG | + | tig0040895:6441-6460 | None:intergenic | 45.0% | |
| AGAGACATTTGGACAGACGT+GGG | - | tig0040895:6474-6493 | Msa1460440:CDS | 45.0% | |
| CCACTTCGTTCTAGTACTTC+AGG | + | tig0040895:6761-6780 | None:intergenic | 45.0% | |
| ! | CCTGAAGTACTAGAACGAAG+TGG | - | tig0040895:6758-6777 | Msa1460440:CDS | 45.0% |
| !! | GAACGAAGTGGAGCTTTGTT+TGG | - | tig0040895:6770-6789 | Msa1460440:CDS | 45.0% |
| TCTTGAGGCTATTCCCTTCT+AGG | - | tig0040895:6852-6871 | Msa1460440:intron | 45.0% | |
| ! | TTTCTGCTACTGGCCTAGAA+GGG | + | tig0040895:6868-6887 | None:intergenic | 45.0% |
| !! | TTTTCTGCTACTGGCCTAGA+AGG | + | tig0040895:6869-6888 | None:intergenic | 45.0% |
| AGTGTTGTACATAGTCGGAG+CGG | - | tig0040895:6917-6936 | Msa1460440:CDS | 45.0% | |
| CACACCGTGGTAAGTTGTTA+GGG | - | tig0040895:7102-7121 | Msa1460440:exon | 45.0% | |
| GGAGAAGTGAAGTGGTTGAG+AGG | + | tig0040895:4132-4151 | None:intergenic | 50.0% | |
| CTTTCGCAGTCACAAGCAAC+TGG | - | tig0040895:4249-4268 | Msa1460440:three_prime_UTR | 50.0% | |
| ACAGTGCCAACGAAGAACTG+TGG | + | tig0040895:4730-4749 | None:intergenic | 50.0% | |
| CTTCGTTGGCACTGTTGTTG+CGG | - | tig0040895:4735-4754 | Msa1460440:CDS | 50.0% | |
| ACTTCGGTAGGACACTGTTG+AGG | - | tig0040895:4970-4989 | Msa1460440:CDS | 50.0% | |
| GGTGGTCAGTACAGAACTAG+AGG | + | tig0040895:5170-5189 | None:intergenic | 50.0% | |
| !! | TCCGAGGCACTGTTCTATGT+CGG | - | tig0040895:6212-6231 | Msa1460440:intron | 50.0% |
| TCCGACATAGAACAGTGCCT+CGG | + | tig0040895:6216-6235 | None:intergenic | 50.0% | |
| ACCTCTGCTTTCCTCACAAC+GGG | - | tig0040895:6335-6354 | Msa1460440:intron | 50.0% | |
| TTTGTATGTGACCTGGTCGG+TGG | - | tig0040895:6385-6404 | Msa1460440:intron | 50.0% | |
| GAGAGACATTTGGACAGACG+TGG | - | tig0040895:6473-6492 | Msa1460440:CDS | 50.0% | |
| ATGCAGCTTGACGAGTCTAC+TGG | - | tig0040895:6574-6593 | Msa1460440:CDS | 50.0% | |
| TCTAGTACTTCAGGTGACGC+AGG | + | tig0040895:6752-6771 | None:intergenic | 50.0% | |
| GCACACCGTGGTAAGTTGTT+AGG | - | tig0040895:7101-7120 | Msa1460440:exon | 50.0% | |
| ! | GGTCTCATCACTGGCCTCAA+AGG | - | tig0040895:6305-6324 | Msa1460440:intron | 55.0% |
| ACCCGTTGTGAGGAAAGCAG+AGG | + | tig0040895:6339-6358 | None:intergenic | 55.0% | |
| ! | GACGAGTCTACTGGTCTGAG+AGG | - | tig0040895:6583-6602 | Msa1460440:CDS | 55.0% |
| AGGTGGCTGATCGTGTCCAG+AGG | - | tig0040895:6252-6271 | Msa1460440:intron | 60.0% | |
| ACAGACGTGGGTCATCGTGC+TGG | - | tig0040895:6486-6505 | Msa1460440:CDS | 60.0% | |
| GACCTGGTCGGTGGTTCGCA+TGG | - | tig0040895:6394-6413 | Msa1460440:intron | 65.0% | |
| TGCCATGCGAACCACCGACC+AGG | + | tig0040895:6399-6418 | None:intergenic | 65.0% | |
| GTCGGTGGTTCGCATGGCAG+CGG | - | tig0040895:6400-6419 | Msa1460440:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0040895 | gene | 4016 | 7200 | 4016 | ID=Msa1460440;Name=Msa1460440 |
| tig0040895 | mRNA | 4016 | 7200 | 4016 | ID=Msa1460440-mRNA-1;Parent=Msa1460440;Name=Msa1460440-mRNA-1;_AED=0.08;_eAED=0.08;_QI=82|1|1|1|1|1|5|305|356 |
| tig0040895 | exon | 4016 | 4539 | 4016 | ID=Msa1460440-mRNA-1:exon:22744;Parent=Msa1460440-mRNA-1 |
| tig0040895 | exon | 4684 | 5024 | 4684 | ID=Msa1460440-mRNA-1:exon:22743;Parent=Msa1460440-mRNA-1 |
| tig0040895 | exon | 6432 | 6806 | 6432 | ID=Msa1460440-mRNA-1:exon:22742;Parent=Msa1460440-mRNA-1 |
| tig0040895 | exon | 6886 | 6958 | 6886 | ID=Msa1460440-mRNA-1:exon:22741;Parent=Msa1460440-mRNA-1 |
| tig0040895 | exon | 7056 | 7200 | 7056 | ID=Msa1460440-mRNA-1:exon:22740;Parent=Msa1460440-mRNA-1 |
| tig0040895 | five_prime_UTR | 7119 | 7200 | 7119 | ID=Msa1460440-mRNA-1:five_prime_utr;Parent=Msa1460440-mRNA-1 |
| tig0040895 | CDS | 7056 | 7118 | 7056 | ID=Msa1460440-mRNA-1:cds;Parent=Msa1460440-mRNA-1 |
| tig0040895 | CDS | 6886 | 6958 | 6886 | ID=Msa1460440-mRNA-1:cds;Parent=Msa1460440-mRNA-1 |
| tig0040895 | CDS | 6432 | 6806 | 6432 | ID=Msa1460440-mRNA-1:cds;Parent=Msa1460440-mRNA-1 |
| tig0040895 | CDS | 4684 | 5024 | 4684 | ID=Msa1460440-mRNA-1:cds;Parent=Msa1460440-mRNA-1 |
| tig0040895 | CDS | 4321 | 4539 | 4321 | ID=Msa1460440-mRNA-1:cds;Parent=Msa1460440-mRNA-1 |
| tig0040895 | three_prime_UTR | 4016 | 4320 | 4016 | ID=Msa1460440-mRNA-1:three_prime_utr;Parent=Msa1460440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
