AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0384430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0384430 MtrunA17_Chr3g0141281 97.838 185 2 1 1 183 170 354 1.99e-128 364
Msa0384430 MtrunA17_Chr3g0117341 34.857 175 111 1 5 176 196 370 4.28e-31 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0384430 AT1G48460.2 61.622 185 69 1 1 183 119 303 8.46e-82 244
Msa0384430 AT1G48460.1 61.622 185 69 1 1 183 156 340 2.49e-81 244
Msa0384430 AT5G63040.2 35.329 167 108 0 5 171 190 356 2.78e-22 92.4
Msa0384430 AT5G63040.1 35.329 167 108 0 5 171 190 356 3.07e-22 92.4

Find 52 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGAGGCTATTCCCTTCT+AGG 0.161760 3_1:-87523459 Msa0384430:CDS
AGACAAACCTCAAATATAAT+AGG 0.229602 3_1:+87523793 None:intergenic
AGCAGCACAGCCAACTAAAA+AGG 0.270995 3_1:+87523873 None:intergenic
TTAGAGCTGTACTGTAAATA+TGG 0.272745 3_1:+87524036 None:intergenic
CATCAACTTCTCGGCAAAAT+TGG 0.283065 3_1:+87523603 None:intergenic
GAACGAAGTGGAGCTTTGTT+TGG 0.345152 3_1:-87523541 Msa0384430:CDS
TGCATACAATACCCAGTAAC+TGG 0.357271 3_1:+87523503 None:intergenic
GGTGTGCGAATCAATTATTT+TGG 0.360901 3_1:+87523226 None:intergenic
CCACTTCGTTCTAGTACTTC+AGG 0.361982 3_1:+87523553 None:intergenic
TCTAGTCCCTATTATATTTG+AGG 0.362027 3_1:-87523800 Msa0384430:intron
ATTTGCATTTGAGAGACATT+TGG 0.369154 3_1:-87523848 Msa0384430:CDS
TACTGGGTATTGTATGCATT+TGG 0.376974 3_1:-87523498 Msa0384430:CDS
TGGAGCTTTGTTTGGAATGA+TGG 0.401307 3_1:-87523533 Msa0384430:CDS
ACCTCTGCTTTCCTCACAAC+GGG 0.412478 3_1:-87523976 Msa0384430:CDS
CGGAGCGGATAACATTTATA+AGG 0.421430 3_1:-87523379 Msa0384430:three_prime_UTR
GACAAACCTCAAATATAATA+GGG 0.437022 3_1:+87523794 None:intergenic
TACAGTACAGCTCTAAAAGA+TGG 0.450227 3_1:-87524029 Msa0384430:intron
CATAGAGTACATCAACTTCT+CGG 0.455751 3_1:+87523594 None:intergenic
AAAAGATGGGGTCTCATCAC+TGG 0.458268 3_1:-87524015 Msa0384430:CDS
AAGGCGATTAACTTCAATGT+AGG 0.460653 3_1:-87523360 Msa0384430:three_prime_UTR
GAAGTTGATGTACTCTATGA+AGG 0.469649 3_1:-87523590 Msa0384430:CDS
CAGAGGTTATATATCCTTTG+AGG 0.492149 3_1:+87523992 None:intergenic
CATTGATGACGTTTCTCTTG+AGG 0.505870 3_1:-87523474 Msa0384430:CDS
ACAGTACAGCTCTAAAAGAT+GGG 0.516922 3_1:-87524028 Msa0384430:intron
GTCGGTGGTTCGCATGGCAG+CGG 0.518805 3_1:-87523911 Msa0384430:CDS
ACAGACGTGGGTCATCGTGC+TGG 0.519318 3_1:-87523825 Msa0384430:CDS
GGTCTCATCACTGGCCTCAA+AGG 0.549169 3_1:-87524006 Msa0384430:CDS
GTCACATACAAAAGAAGAAG+AGG 0.559688 3_1:+87523937 None:intergenic
GACCTGGTCGGTGGTTCGCA+TGG 0.562381 3_1:-87523917 Msa0384430:CDS
TGCCATGCGAACCACCGACC+AGG 0.563381 3_1:+87523915 None:intergenic
TGTACTGTAAATATGGCCTC+TGG 0.563744 3_1:+87524043 None:intergenic
GGAAGAGTGTTGTACATAGT+CGG 0.575600 3_1:-87523399 Msa0384430:three_prime_UTR
AAGTTGATGTACTCTATGAA+GGG 0.577690 3_1:-87523589 Msa0384430:CDS
TCCGAGGCACTGTTCTATGT+CGG 0.580851 3_1:-87524099 Msa0384430:CDS
GAGAGACATTTGGACAGACG+TGG 0.588933 3_1:-87523838 Msa0384430:CDS
TTTCTGCTACTGGCCTAGAA+GGG 0.597512 3_1:+87523446 None:intergenic
TCAAATATAATAGGGACTAG+AGG 0.608339 3_1:+87523802 None:intergenic
TGTGACTTCATTCTCTTCCG+AGG 0.611821 3_1:-87524115 Msa0384430:CDS
AACCTCTGCTTTCCTCACAA+CGG 0.613720 3_1:-87523977 Msa0384430:CDS
AGTTGATGTACTCTATGAAG+GGG 0.619565 3_1:-87523588 Msa0384430:CDS
TCCGACATAGAACAGTGCCT+CGG 0.628444 3_1:+87524098 None:intergenic
AGGTGGCTGATCGTGTCCAG+AGG 0.630587 3_1:-87524059 Msa0384430:CDS
TCTAGTACTTCAGGTGACGC+AGG 0.632274 3_1:+87523562 None:intergenic
TTTGTATGTGACCTGGTCGG+TGG 0.632802 3_1:-87523926 Msa0384430:CDS
CCTGAAGTACTAGAACGAAG+TGG 0.656210 3_1:-87523553 Msa0384430:CDS
CAGTACAGCTCTAAAAGATG+GGG 0.663248 3_1:-87524027 Msa0384430:intron
AGAGACATTTGGACAGACGT+GGG 0.672518 3_1:-87523837 Msa0384430:CDS
ATACAAAAGAAGAAGAGGAA+CGG 0.679901 3_1:+87523942 None:intergenic
ACCCGTTGTGAGGAAAGCAG+AGG 0.694025 3_1:+87523975 None:intergenic
AATAATTGATTCGCACACCG+TGG 0.717711 3_1:-87523222 Msa0384430:three_prime_UTR
AGTGTTGTACATAGTCGGAG+CGG 0.720519 3_1:-87523394 Msa0384430:three_prime_UTR
TGAACCCTAACAGCTTACCA+CGG 0.761108 3_1:+87523205 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGACATTGTTTATTTTCT+CGG + chr3_1:87524067-87524086 None:intergenic 20.0%
!!! AAAGACATTGTTTATTTTCT+CGG + chr3_1:87524067-87524086 None:intergenic 20.0%
! GACAAACCTCAAATATAATA+GGG + chr3_1:87523544-87523563 None:intergenic 25.0%
! AGACAAACCTCAAATATAAT+AGG + chr3_1:87523545-87523564 None:intergenic 25.0%
!!! GAAAATTACTGAGTTTTGTA+TGG - chr3_1:87523908-87523927 Msa0384430:CDS 25.0%
! GACAAACCTCAAATATAATA+GGG + chr3_1:87523544-87523563 None:intergenic 25.0%
! AGACAAACCTCAAATATAAT+AGG + chr3_1:87523545-87523564 None:intergenic 25.0%
!!! GAAAATTACTGAGTTTTGTA+TGG - chr3_1:87523908-87523927 Msa0384430:CDS 25.0%
TTAGAGCTGTACTGTAAATA+TGG + chr3_1:87523302-87523321 None:intergenic 30.0%
ATACAAAAGAAGAAGAGGAA+CGG + chr3_1:87523396-87523415 None:intergenic 30.0%
ATTTGCATTTGAGAGACATT+TGG - chr3_1:87523487-87523506 Msa0384430:CDS 30.0%
TCAAATATAATAGGGACTAG+AGG + chr3_1:87523536-87523555 None:intergenic 30.0%
TCTAGTCCCTATTATATTTG+AGG - chr3_1:87523535-87523554 Msa0384430:CDS 30.0%
!! AAGTTGATGTACTCTATGAA+GGG - chr3_1:87523746-87523765 Msa0384430:intron 30.0%
!! TACTGAGTTTTGTATGGAAT+TGG - chr3_1:87523914-87523933 Msa0384430:CDS 30.0%
!! ACTGAGTTTTGTATGGAATT+GGG - chr3_1:87523915-87523934 Msa0384430:CDS 30.0%
!!! TATTTTGGCTGTAAACAAAC+AGG + chr3_1:87524097-87524116 None:intergenic 30.0%
TTAGAGCTGTACTGTAAATA+TGG + chr3_1:87523302-87523321 None:intergenic 30.0%
ATACAAAAGAAGAAGAGGAA+CGG + chr3_1:87523396-87523415 None:intergenic 30.0%
ATTTGCATTTGAGAGACATT+TGG - chr3_1:87523487-87523506 Msa0384430:CDS 30.0%
TCAAATATAATAGGGACTAG+AGG + chr3_1:87523536-87523555 None:intergenic 30.0%
TCTAGTCCCTATTATATTTG+AGG - chr3_1:87523535-87523554 Msa0384430:CDS 30.0%
!! AAGTTGATGTACTCTATGAA+GGG - chr3_1:87523746-87523765 Msa0384430:intron 30.0%
!! TACTGAGTTTTGTATGGAAT+TGG - chr3_1:87523914-87523933 Msa0384430:CDS 30.0%
!! ACTGAGTTTTGTATGGAATT+GGG - chr3_1:87523915-87523934 Msa0384430:CDS 30.0%
!!! TATTTTGGCTGTAAACAAAC+AGG + chr3_1:87524097-87524116 None:intergenic 30.0%
!! TACAGTACAGCTCTAAAAGA+TGG - chr3_1:87523306-87523325 Msa0384430:three_prime_UTR 35.0%
!! ACAGTACAGCTCTAAAAGAT+GGG - chr3_1:87523307-87523326 Msa0384430:three_prime_UTR 35.0%
CAGAGGTTATATATCCTTTG+AGG + chr3_1:87523346-87523365 None:intergenic 35.0%
GTCACATACAAAAGAAGAAG+AGG + chr3_1:87523401-87523420 None:intergenic 35.0%
! TTCTTCTTTTGTATGTGACC+TGG - chr3_1:87523402-87523421 Msa0384430:three_prime_UTR 35.0%
TGAGAGGAATAACAACAACT+TGG - chr3_1:87523623-87523642 Msa0384430:CDS 35.0%
!! TGAAATTGAATTGACTTGCC+AGG - chr3_1:87523679-87523698 Msa0384430:intron 35.0%
CATAGAGTACATCAACTTCT+CGG + chr3_1:87523744-87523763 None:intergenic 35.0%
!! GAAGTTGATGTACTCTATGA+AGG - chr3_1:87523745-87523764 Msa0384430:intron 35.0%
! AGTTGATGTACTCTATGAAG+GGG - chr3_1:87523747-87523766 Msa0384430:intron 35.0%
! ATGGTGATTTTCCAGTTACT+GGG - chr3_1:87523821-87523840 Msa0384430:CDS 35.0%
! TACTGGGTATTGTATGCATT+TGG - chr3_1:87523837-87523856 Msa0384430:CDS 35.0%
! ACTCAGTAATTTTCTGCTAC+TGG + chr3_1:87523902-87523921 None:intergenic 35.0%
AAGGCGATTAACTTCAATGT+AGG - chr3_1:87523975-87523994 Msa0384430:CDS 35.0%
! GGTGTGCGAATCAATTATTT+TGG + chr3_1:87524112-87524131 None:intergenic 35.0%
!! TACAGTACAGCTCTAAAAGA+TGG - chr3_1:87523306-87523325 Msa0384430:three_prime_UTR 35.0%
!! ACAGTACAGCTCTAAAAGAT+GGG - chr3_1:87523307-87523326 Msa0384430:three_prime_UTR 35.0%
CAGAGGTTATATATCCTTTG+AGG + chr3_1:87523346-87523365 None:intergenic 35.0%
GTCACATACAAAAGAAGAAG+AGG + chr3_1:87523401-87523420 None:intergenic 35.0%
! TTCTTCTTTTGTATGTGACC+TGG - chr3_1:87523402-87523421 Msa0384430:three_prime_UTR 35.0%
TGAGAGGAATAACAACAACT+TGG - chr3_1:87523623-87523642 Msa0384430:CDS 35.0%
!! TGAAATTGAATTGACTTGCC+AGG - chr3_1:87523679-87523698 Msa0384430:intron 35.0%
CATAGAGTACATCAACTTCT+CGG + chr3_1:87523744-87523763 None:intergenic 35.0%
!! GAAGTTGATGTACTCTATGA+AGG - chr3_1:87523745-87523764 Msa0384430:intron 35.0%
! AGTTGATGTACTCTATGAAG+GGG - chr3_1:87523747-87523766 Msa0384430:intron 35.0%
! ATGGTGATTTTCCAGTTACT+GGG - chr3_1:87523821-87523840 Msa0384430:CDS 35.0%
! TACTGGGTATTGTATGCATT+TGG - chr3_1:87523837-87523856 Msa0384430:CDS 35.0%
! ACTCAGTAATTTTCTGCTAC+TGG + chr3_1:87523902-87523921 None:intergenic 35.0%
AAGGCGATTAACTTCAATGT+AGG - chr3_1:87523975-87523994 Msa0384430:CDS 35.0%
! GGTGTGCGAATCAATTATTT+TGG + chr3_1:87524112-87524131 None:intergenic 35.0%
! ACTTGCAACATTTTTGCAGG+TGG - chr3_1:87523259-87523278 Msa0384430:three_prime_UTR 40.0%
TGTACTGTAAATATGGCCTC+TGG + chr3_1:87523295-87523314 None:intergenic 40.0%
!! CAGTACAGCTCTAAAAGATG+GGG - chr3_1:87523308-87523327 Msa0384430:three_prime_UTR 40.0%
! CAATTTTCAAACCCGTTGTG+AGG + chr3_1:87523373-87523392 None:intergenic 40.0%
! TCTTTTGTATGTGACCTGGT+CGG - chr3_1:87523406-87523425 Msa0384430:three_prime_UTR 40.0%
!! GCTATAGCTCCCTTTTTAGT+TGG - chr3_1:87523452-87523471 Msa0384430:CDS 40.0%
GCTGATACAATCTGTATACC+TGG + chr3_1:87523700-87523719 None:intergenic 40.0%
CATCAACTTCTCGGCAAAAT+TGG + chr3_1:87523735-87523754 None:intergenic 40.0%
!! TGGAGCTTTGTTTGGAATGA+TGG - chr3_1:87523802-87523821 Msa0384430:CDS 40.0%
! GATGGTGATTTTCCAGTTAC+TGG - chr3_1:87523820-87523839 Msa0384430:CDS 40.0%
TGCATACAATACCCAGTAAC+TGG + chr3_1:87523835-87523854 None:intergenic 40.0%
!! CATTGATGACGTTTCTCTTG+AGG - chr3_1:87523861-87523880 Msa0384430:CDS 40.0%
!! GGAAGAGTGTTGTACATAGT+CGG - chr3_1:87523936-87523955 Msa0384430:CDS 40.0%
CGGAGCGGATAACATTTATA+AGG - chr3_1:87523956-87523975 Msa0384430:CDS 40.0%
!! AATAATTGATTCGCACACCG+TGG - chr3_1:87524113-87524132 Msa0384430:CDS 40.0%
! ACTTGCAACATTTTTGCAGG+TGG - chr3_1:87523259-87523278 Msa0384430:three_prime_UTR 40.0%
TGTACTGTAAATATGGCCTC+TGG + chr3_1:87523295-87523314 None:intergenic 40.0%
!! CAGTACAGCTCTAAAAGATG+GGG - chr3_1:87523308-87523327 Msa0384430:three_prime_UTR 40.0%
! CAATTTTCAAACCCGTTGTG+AGG + chr3_1:87523373-87523392 None:intergenic 40.0%
! TCTTTTGTATGTGACCTGGT+CGG - chr3_1:87523406-87523425 Msa0384430:three_prime_UTR 40.0%
!! GCTATAGCTCCCTTTTTAGT+TGG - chr3_1:87523452-87523471 Msa0384430:CDS 40.0%
GCTGATACAATCTGTATACC+TGG + chr3_1:87523700-87523719 None:intergenic 40.0%
CATCAACTTCTCGGCAAAAT+TGG + chr3_1:87523735-87523754 None:intergenic 40.0%
!! TGGAGCTTTGTTTGGAATGA+TGG - chr3_1:87523802-87523821 Msa0384430:CDS 40.0%
! GATGGTGATTTTCCAGTTAC+TGG - chr3_1:87523820-87523839 Msa0384430:CDS 40.0%
TGCATACAATACCCAGTAAC+TGG + chr3_1:87523835-87523854 None:intergenic 40.0%
!! CATTGATGACGTTTCTCTTG+AGG - chr3_1:87523861-87523880 Msa0384430:CDS 40.0%
!! GGAAGAGTGTTGTACATAGT+CGG - chr3_1:87523936-87523955 Msa0384430:CDS 40.0%
CGGAGCGGATAACATTTATA+AGG - chr3_1:87523956-87523975 Msa0384430:CDS 40.0%
!! AATAATTGATTCGCACACCG+TGG - chr3_1:87524113-87524132 Msa0384430:CDS 40.0%
TGTGACTTCATTCTCTTCCG+AGG - chr3_1:87523220-87523239 Msa0384430:three_prime_UTR 45.0%
! CGGACTTGCAACATTTTTGC+AGG - chr3_1:87523256-87523275 Msa0384430:three_prime_UTR 45.0%
AAAAGATGGGGTCTCATCAC+TGG - chr3_1:87523320-87523339 Msa0384430:three_prime_UTR 45.0%
AACCTCTGCTTTCCTCACAA+CGG - chr3_1:87523358-87523377 Msa0384430:three_prime_UTR 45.0%
GCAGCACAGCCAACTAAAAA+GGG + chr3_1:87523464-87523483 None:intergenic 45.0%
AGCAGCACAGCCAACTAAAA+AGG + chr3_1:87523465-87523484 None:intergenic 45.0%
AGAGACATTTGGACAGACGT+GGG - chr3_1:87523498-87523517 Msa0384430:CDS 45.0%
CCACTTCGTTCTAGTACTTC+AGG + chr3_1:87523785-87523804 None:intergenic 45.0%
! CCTGAAGTACTAGAACGAAG+TGG - chr3_1:87523782-87523801 Msa0384430:intron 45.0%
!! GAACGAAGTGGAGCTTTGTT+TGG - chr3_1:87523794-87523813 Msa0384430:intron 45.0%
TCTTGAGGCTATTCCCTTCT+AGG - chr3_1:87523876-87523895 Msa0384430:CDS 45.0%
! TTTCTGCTACTGGCCTAGAA+GGG + chr3_1:87523892-87523911 None:intergenic 45.0%
!! TTTTCTGCTACTGGCCTAGA+AGG + chr3_1:87523893-87523912 None:intergenic 45.0%
AGTGTTGTACATAGTCGGAG+CGG - chr3_1:87523941-87523960 Msa0384430:CDS 45.0%
TGTGACTTCATTCTCTTCCG+AGG - chr3_1:87523220-87523239 Msa0384430:three_prime_UTR 45.0%
! CGGACTTGCAACATTTTTGC+AGG - chr3_1:87523256-87523275 Msa0384430:three_prime_UTR 45.0%
AAAAGATGGGGTCTCATCAC+TGG - chr3_1:87523320-87523339 Msa0384430:three_prime_UTR 45.0%
AACCTCTGCTTTCCTCACAA+CGG - chr3_1:87523358-87523377 Msa0384430:three_prime_UTR 45.0%
GCAGCACAGCCAACTAAAAA+GGG + chr3_1:87523464-87523483 None:intergenic 45.0%
AGCAGCACAGCCAACTAAAA+AGG + chr3_1:87523465-87523484 None:intergenic 45.0%
AGAGACATTTGGACAGACGT+GGG - chr3_1:87523498-87523517 Msa0384430:CDS 45.0%
CCACTTCGTTCTAGTACTTC+AGG + chr3_1:87523785-87523804 None:intergenic 45.0%
! CCTGAAGTACTAGAACGAAG+TGG - chr3_1:87523782-87523801 Msa0384430:intron 45.0%
!! GAACGAAGTGGAGCTTTGTT+TGG - chr3_1:87523794-87523813 Msa0384430:intron 45.0%
TCTTGAGGCTATTCCCTTCT+AGG - chr3_1:87523876-87523895 Msa0384430:CDS 45.0%
! TTTCTGCTACTGGCCTAGAA+GGG + chr3_1:87523892-87523911 None:intergenic 45.0%
!! TTTTCTGCTACTGGCCTAGA+AGG + chr3_1:87523893-87523912 None:intergenic 45.0%
AGTGTTGTACATAGTCGGAG+CGG - chr3_1:87523941-87523960 Msa0384430:CDS 45.0%
!! TCCGAGGCACTGTTCTATGT+CGG - chr3_1:87523236-87523255 Msa0384430:three_prime_UTR 50.0%
TCCGACATAGAACAGTGCCT+CGG + chr3_1:87523240-87523259 None:intergenic 50.0%
ACCTCTGCTTTCCTCACAAC+GGG - chr3_1:87523359-87523378 Msa0384430:three_prime_UTR 50.0%
TTTGTATGTGACCTGGTCGG+TGG - chr3_1:87523409-87523428 Msa0384430:three_prime_UTR 50.0%
GAGAGACATTTGGACAGACG+TGG - chr3_1:87523497-87523516 Msa0384430:CDS 50.0%
ATGCAGCTTGACGAGTCTAC+TGG - chr3_1:87523598-87523617 Msa0384430:CDS 50.0%
TCTAGTACTTCAGGTGACGC+AGG + chr3_1:87523776-87523795 None:intergenic 50.0%
!! TCCGAGGCACTGTTCTATGT+CGG - chr3_1:87523236-87523255 Msa0384430:three_prime_UTR 50.0%
TCCGACATAGAACAGTGCCT+CGG + chr3_1:87523240-87523259 None:intergenic 50.0%
ACCTCTGCTTTCCTCACAAC+GGG - chr3_1:87523359-87523378 Msa0384430:three_prime_UTR 50.0%
TTTGTATGTGACCTGGTCGG+TGG - chr3_1:87523409-87523428 Msa0384430:three_prime_UTR 50.0%
GAGAGACATTTGGACAGACG+TGG - chr3_1:87523497-87523516 Msa0384430:CDS 50.0%
ATGCAGCTTGACGAGTCTAC+TGG - chr3_1:87523598-87523617 Msa0384430:CDS 50.0%
TCTAGTACTTCAGGTGACGC+AGG + chr3_1:87523776-87523795 None:intergenic 50.0%
! GGTCTCATCACTGGCCTCAA+AGG - chr3_1:87523329-87523348 Msa0384430:three_prime_UTR 55.0%
ACCCGTTGTGAGGAAAGCAG+AGG + chr3_1:87523363-87523382 None:intergenic 55.0%
! GACGAGTCTACTGGTCTGAG+AGG - chr3_1:87523607-87523626 Msa0384430:CDS 55.0%
! GGTCTCATCACTGGCCTCAA+AGG - chr3_1:87523329-87523348 Msa0384430:three_prime_UTR 55.0%
ACCCGTTGTGAGGAAAGCAG+AGG + chr3_1:87523363-87523382 None:intergenic 55.0%
! GACGAGTCTACTGGTCTGAG+AGG - chr3_1:87523607-87523626 Msa0384430:CDS 55.0%
AGGTGGCTGATCGTGTCCAG+AGG - chr3_1:87523276-87523295 Msa0384430:three_prime_UTR 60.0%
ACAGACGTGGGTCATCGTGC+TGG - chr3_1:87523510-87523529 Msa0384430:CDS 60.0%
AGGTGGCTGATCGTGTCCAG+AGG - chr3_1:87523276-87523295 Msa0384430:three_prime_UTR 60.0%
ACAGACGTGGGTCATCGTGC+TGG - chr3_1:87523510-87523529 Msa0384430:CDS 60.0%
GACCTGGTCGGTGGTTCGCA+TGG - chr3_1:87523418-87523437 Msa0384430:three_prime_UTR 65.0%
TGCCATGCGAACCACCGACC+AGG + chr3_1:87523423-87523442 None:intergenic 65.0%
GTCGGTGGTTCGCATGGCAG+CGG - chr3_1:87523424-87523443 Msa0384430:exon 65.0%
GACCTGGTCGGTGGTTCGCA+TGG - chr3_1:87523418-87523437 Msa0384430:three_prime_UTR 65.0%
TGCCATGCGAACCACCGACC+AGG + chr3_1:87523423-87523442 None:intergenic 65.0%
GTCGGTGGTTCGCATGGCAG+CGG - chr3_1:87523424-87523443 Msa0384430:exon 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 87523218 87524139 87523218 ID=Msa0384430;Name=Msa0384430
chr3_1 mRNA 87523218 87524139 87523218 ID=Msa0384430-mRNA-1;Parent=Msa0384430;Name=Msa0384430-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.5|0.33|1|0.5|0.33|3|220|183
chr3_1 exon 87523218 87523656 87523218 ID=Msa0384430-mRNA-1:exon:23455;Parent=Msa0384430-mRNA-1
chr3_1 exon 87523801 87524041 87523801 ID=Msa0384430-mRNA-1:exon:23454;Parent=Msa0384430-mRNA-1
chr3_1 exon 87524048 87524139 87524048 ID=Msa0384430-mRNA-1:exon:23453;Parent=Msa0384430-mRNA-1
chr3_1 CDS 87524048 87524139 87524048 ID=Msa0384430-mRNA-1:cds;Parent=Msa0384430-mRNA-1
chr3_1 CDS 87523801 87524041 87523801 ID=Msa0384430-mRNA-1:cds;Parent=Msa0384430-mRNA-1
chr3_1 CDS 87523438 87523656 87523438 ID=Msa0384430-mRNA-1:cds;Parent=Msa0384430-mRNA-1
chr3_1 three_prime_UTR 87523218 87523437 87523218 ID=Msa0384430-mRNA-1:three_prime_utr;Parent=Msa0384430-mRNA-1
Gene Sequence

>Msa0384430

ATTGTGACTTCATTCTCTTCCGAGGCACTGTTCTATGTCGGACTTGCAACATTTTTGCAGGTGGCTGATCGTGTCCAGAGGCCATATTTACACTCTAAAAGATGGGGTCTCATCACTGGCCTCAAAGGATATATAACCTCTGCTTTCCTCACAACGGGTTTGAAAATTGCCGTTCCTCTTCTTCTTTTGTATGTGACCTGGTCGGTGGTTCGCATGGCAGCGGTTGTTGCTATAGCTCCCTTTTTAGTTGGCTGTGCTGCTCAATTTGCATTTGAGAGACATTTGGACAGACGTGGGTCATCGTGCTGGCCTCTAGTCCCTATTATATTTGAGGTATACAGATTGTATCAGCTAACAAAAGCAGCCAATTTTGCCGAGAAGTTGATGTACTCTATGAAGGGGCTACCTGCGTCACCTGAAGTACTAGAACGAAGTGGAGCTTTGTTTGGAATGATGGTGATTTTCCAGTTACTGGGTATTGTATGCATTTGGTCATTGATGACGTTTCTCTTGAGGCTATTCCCTTCTAGGCCAGTAGCAGAAAATTACTGA
Protein sequence

>Msa0384430

IVTSFSSEALFYVGLATFLQVADRVQRPYLHSKRWGLITGLKGYITSAFLTTGLKIAVPLLLLYVTWSVVRMAAVVAIAPFLVGCAAQFAFERHLDRRGSSCWPLVPIIFEVYRLYQLTKAANFAEKLMYSMKGLPASPEVLERSGALFGMMVIFQLLGIVCIWSLMTFLLRLFPSRPVAENY*