Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727170 | XP_003614114.1 | 96.226 | 583 | 17 | 2 | 1 | 583 | 1 | 578 | 0.0 | 1156 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727170 | sp|F4I0K2|SCKL2_ARATH | 57.983 | 595 | 215 | 9 | 1 | 577 | 1 | 578 | 0.0 | 657 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727170 | G7JY18 | 96.226 | 583 | 17 | 2 | 1 | 583 | 1 | 578 | 0.0 | 1156 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0056520 | Msa0727170 | 0.842655 | 2.265261e-58 | -8.615850e-47 |
| Msa0056690 | Msa0727170 | 0.843790 | 1.128516e-58 | -8.615850e-47 |
| Msa0639370 | Msa0727170 | 0.823479 | 1.354752e-53 | -8.615850e-47 |
| Msa0661240 | Msa0727170 | 0.832294 | 1.026352e-55 | -8.615850e-47 |
| Msa0682460 | Msa0727170 | 0.821935 | 3.099120e-53 | -8.615850e-47 |
| Msa0688370 | Msa0727170 | 0.800018 | 1.754810e-48 | -8.615850e-47 |
| Msa0727170 | Msa0728280 | 0.833780 | 4.379824e-56 | -8.615850e-47 |
| Msa0727170 | Msa0728380 | 0.844628 | 6.721064e-59 | -8.615850e-47 |
| Msa0727170 | Msa0728540 | 0.847040 | 1.486913e-59 | -8.615850e-47 |
| Msa0727170 | Msa0767520 | 0.879608 | 1.084640e-69 | -8.615850e-47 |
| Msa0727170 | Msa0776480 | 0.829559 | 4.809428e-55 | -8.615850e-47 |
| Msa0727170 | Msa0783340 | 0.807931 | 3.972125e-50 | -8.615850e-47 |
| Msa0727170 | Msa0835520 | 0.804235 | 2.381044e-49 | -8.615850e-47 |
| Msa0727170 | Msa0847100 | 0.842236 | 2.924182e-58 | -8.615850e-47 |
| Msa0727170 | Msa0880220 | 0.812011 | 5.252958e-51 | -8.615850e-47 |
| Msa0727170 | Msa0913090 | 0.817665 | 2.931573e-52 | -8.615850e-47 |
| Msa0727170 | Msa0950320 | 0.800623 | 1.321184e-48 | -8.615850e-47 |
| Msa0727170 | Msa1072340 | 0.822848 | 1.901702e-53 | -8.615850e-47 |
| Msa0727170 | Msa1118150 | 0.809848 | 1.544596e-50 | -8.615850e-47 |
| Msa0727170 | Msa1159350 | 0.809122 | 2.211127e-50 | -8.615850e-47 |
| Msa0727170 | Msa1177240 | 0.850330 | 1.820545e-60 | -8.615850e-47 |
| Msa0727170 | Msa1317030 | 0.844295 | 8.258116e-59 | -8.615850e-47 |
| Msa0727170 | Msa1375340 | 0.813421 | 2.581765e-51 | -8.615850e-47 |
| Msa0727170 | Msa1447300 | 0.838954 | 2.115482e-57 | -8.615850e-47 |
| Msa0727170 | Msa1460440 | 0.834429 | 3.013727e-56 | -8.615850e-47 |
| Msa0384430 | Msa0727170 | 0.813897 | 2.028146e-51 | -8.615850e-47 |
| Msa0390060 | Msa0727170 | 0.847097 | 1.434678e-59 | -8.615850e-47 |
| Msa0468160 | Msa0727170 | 0.816138 | 6.453534e-52 | -8.615850e-47 |
| Msa0487770 | Msa0727170 | 0.810487 | 1.124772e-50 | -8.615850e-47 |
| Msa0491020 | Msa0727170 | 0.800484 | 1.410704e-48 | -8.615850e-47 |
| Msa0522660 | Msa0727170 | 0.831089 | 2.034187e-55 | -8.615850e-47 |
| Msa0546840 | Msa0727170 | 0.809318 | 2.007429e-50 | -8.615850e-47 |
| Msa0583740 | Msa0727170 | 0.845434 | 4.071413e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727170 | MtrunA17_Chr5g0419371 | 96.226 | 583 | 17 | 2 | 1 | 583 | 1 | 578 | 0.0 | 1156 |
| Msa0727170 | MtrunA17_Chr4g0008441 | 43.590 | 390 | 190 | 5 | 193 | 565 | 81 | 457 | 9.00e-113 | 344 |
| Msa0727170 | MtrunA17_Chr1g0188291 | 30.747 | 348 | 202 | 5 | 214 | 558 | 7 | 318 | 1.27e-49 | 174 |
| Msa0727170 | MtrunA17_Chr2g0329451 | 32.362 | 309 | 184 | 5 | 255 | 560 | 40 | 326 | 1.35e-49 | 174 |
| Msa0727170 | MtrunA17_Chr4g0033631 | 30.925 | 346 | 200 | 6 | 215 | 557 | 15 | 324 | 1.56e-49 | 174 |
| Msa0727170 | MtrunA17_Chr1g0204101 | 29.651 | 344 | 205 | 5 | 215 | 555 | 23 | 332 | 1.41e-47 | 169 |
| Msa0727170 | MtrunA17_Chr6g0474331 | 29.577 | 355 | 213 | 6 | 204 | 555 | 17 | 337 | 2.12e-47 | 169 |
| Msa0727170 | MtrunA17_Chr5g0434971 | 30.925 | 346 | 199 | 8 | 214 | 555 | 66 | 375 | 2.39e-43 | 159 |
| Msa0727170 | MtrunA17_Chr1g0171921 | 26.710 | 307 | 200 | 3 | 257 | 557 | 206 | 493 | 1.94e-34 | 137 |
| Msa0727170 | MtrunA17_Chr1g0177771 | 27.961 | 304 | 187 | 6 | 257 | 557 | 276 | 550 | 4.16e-32 | 130 |
| Msa0727170 | MtrunA17_Chr1g0177321 | 28.289 | 304 | 177 | 6 | 257 | 557 | 202 | 467 | 1.83e-30 | 124 |
| Msa0727170 | MtrunA17_Chr1g0183241 | 26.667 | 285 | 187 | 6 | 273 | 555 | 134 | 398 | 2.41e-28 | 117 |
| Msa0727170 | MtrunA17_Chr1g0183661 | 26.897 | 290 | 175 | 8 | 255 | 540 | 14 | 270 | 3.19e-28 | 114 |
| Msa0727170 | MtrunA17_Chr7g0246421 | 30.319 | 188 | 112 | 3 | 351 | 538 | 2 | 170 | 3.22e-23 | 97.8 |
| Msa0727170 | MtrunA17_Chr4g0020911 | 26.257 | 179 | 112 | 3 | 338 | 516 | 44 | 202 | 1.58e-15 | 75.5 |
| Msa0727170 | MtrunA17_Chr1g0176221 | 32.955 | 88 | 59 | 0 | 339 | 426 | 35 | 122 | 4.01e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727170 | AT1G69200.1 | 57.983 | 595 | 215 | 9 | 1 | 577 | 1 | 578 | 0.0 | 657 |
| Msa0727170 | AT3G54090.1 | 43.590 | 390 | 204 | 5 | 191 | 565 | 78 | 466 | 1.60e-109 | 336 |
| Msa0727170 | AT5G51830.2 | 30.618 | 356 | 210 | 5 | 208 | 560 | 16 | 337 | 5.28e-51 | 179 |
| Msa0727170 | AT5G51830.1 | 30.618 | 356 | 210 | 5 | 208 | 560 | 16 | 337 | 5.28e-51 | 179 |
| Msa0727170 | AT2G31390.1 | 33.887 | 301 | 174 | 5 | 255 | 552 | 35 | 313 | 3.80e-50 | 176 |
| Msa0727170 | AT3G59480.1 | 31.715 | 309 | 186 | 5 | 255 | 560 | 36 | 322 | 4.34e-49 | 173 |
| Msa0727170 | AT4G10260.1 | 30.857 | 350 | 203 | 6 | 214 | 560 | 5 | 318 | 1.23e-47 | 169 |
| Msa0727170 | AT1G06030.1 | 30.409 | 342 | 197 | 6 | 215 | 552 | 11 | 315 | 3.82e-47 | 168 |
| Msa0727170 | AT1G06020.1 | 32.119 | 302 | 178 | 6 | 255 | 552 | 36 | 314 | 1.03e-46 | 167 |
| Msa0727170 | AT1G66430.1 | 30.145 | 345 | 203 | 7 | 214 | 555 | 64 | 373 | 6.48e-46 | 166 |
Find 147 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAGATTGCAAAGCATTT+TGG | 0.178739 | 5_1:+29368997 | Msa0727170:CDS |
| CGGTCAGCATTGATAGTAAA+AGG | 0.213176 | 5_1:+29367700 | Msa0727170:CDS |
| CCTCCTCTTGTTTGTTGCTT+TGG | 0.218528 | 5_1:+29367423 | Msa0727170:CDS |
| TCACAAGTGAAAGGGGTAAT+TGG | 0.224197 | 5_1:-29369345 | None:intergenic |
| TCTTCTTTATTCTCCTCTTT+AGG | 0.238219 | 5_1:-29367249 | None:intergenic |
| TTCATCTATGTCACCGATTT+CGG | 0.241991 | 5_1:-29367307 | None:intergenic |
| TTGCCTTAGATTTAGTTCTT+AGG | 0.255741 | 5_1:+29370257 | Msa0727170:three_prime_UTR |
| GTCTTTGCCGACACCTTCTT+AGG | 0.301654 | 5_1:-29366917 | None:intergenic |
| TGCATCTAGTTCTGCTGCTT+TGG | 0.313717 | 5_1:+29367176 | Msa0727170:CDS |
| GAGAAATTTGTTAGGGCTCC+TGG | 0.317093 | 5_1:+29367543 | Msa0727170:CDS |
| GGAAGAAGAGAAAGAAGTTA+AGG | 0.324640 | 5_1:+29367197 | Msa0727170:CDS |
| CTCAAAATTCAGTGTAAATC+TGG | 0.327725 | 5_1:+29366791 | Msa0727170:CDS |
| CCTTTATCAGTTATCAAATC+AGG | 0.336586 | 5_1:-29369933 | None:intergenic |
| CCTGATTTGATAACTGATAA+AGG | 0.337736 | 5_1:+29369933 | Msa0727170:CDS |
| CACAAGTGAAAGGGGTAATT+GGG | 0.339476 | 5_1:-29369344 | None:intergenic |
| ATAAAATGTGTATAACAAAT+TGG | 0.356508 | 5_1:-29370305 | None:intergenic |
| GACATTACTCCTGACCCTTA+TGG | 0.367773 | 5_1:+29370056 | Msa0727170:CDS |
| AAACTTGCAGATGATGAATA+TGG | 0.370202 | 5_1:+29367630 | Msa0727170:CDS |
| TATCACCTGGTTCAACTAAC+TGG | 0.371257 | 5_1:-29370122 | None:intergenic |
| CACTGATGAAGATTGGTAAA+AGG | 0.375060 | 5_1:+29367736 | Msa0727170:CDS |
| GGAGCCCTGAGAAATTTGTT+AGG | 0.379308 | 5_1:+29367535 | Msa0727170:CDS |
| AAACCTAAGAACTAAATCTA+AGG | 0.389763 | 5_1:-29370260 | None:intergenic |
| CATAGTGGTGCAACTACTTC+AGG | 0.392247 | 5_1:-29369222 | None:intergenic |
| TCTGGAGACGGCATTGTTGC+AGG | 0.393744 | 5_1:+29369378 | Msa0727170:CDS |
| AGAAATTTGTTAGGGCTCCT+GGG | 0.394154 | 5_1:+29367544 | Msa0727170:CDS |
| AACAAATCAATTGTCCCTTC+TGG | 0.394435 | 5_1:-29366968 | None:intergenic |
| AGAAGGGACAATTGATTTGT+TGG | 0.395531 | 5_1:+29366970 | Msa0727170:CDS |
| TAAACCTTCCTATGCCACTA+TGG | 0.397175 | 5_1:+29369040 | Msa0727170:CDS |
| ACTATGGCATGAAAATCTTA+AGG | 0.402957 | 5_1:+29369239 | Msa0727170:CDS |
| CTCACTTTCTTCCACTTCCC+AGG | 0.409532 | 5_1:+29366438 | Msa0727170:CDS |
| GGAGCCCTAACAAATTTCTC+AGG | 0.414232 | 5_1:-29367540 | None:intergenic |
| ACTTGTGACATGTCAGCATC+TGG | 0.417881 | 5_1:+29369360 | Msa0727170:CDS |
| TTAACATACTAGCTAAGGTT+TGG | 0.418336 | 5_1:-29366336 | None:intergenic |
| TCATAACAATTGAAATTTCA+AGG | 0.418797 | 5_1:-29370329 | None:intergenic |
| CTGAAGTAGTTGCACCACTA+TGG | 0.424724 | 5_1:+29369223 | Msa0727170:CDS |
| TCTATGAACGTAGTTCAACT+TGG | 0.431744 | 5_1:+29366764 | Msa0727170:CDS |
| GATAGTGCTTCTATTGTAGA+AGG | 0.432468 | 5_1:+29367001 | Msa0727170:CDS |
| TTAGAGAGAGGAAGAGGTGA+AGG | 0.433314 | 5_1:-29366295 | None:intergenic |
| GGATGAGACTGACGATGGTT+TGG | 0.435291 | 5_1:+29367353 | Msa0727170:CDS |
| CTTCAGGTAGGCCTGCCAAT+AGG | 0.463718 | 5_1:+29367469 | Msa0727170:CDS |
| AGCTCGATGGTGCTGTTAGC+GGG | 0.465873 | 5_1:+29369310 | Msa0727170:CDS |
| ACTATCAATGCTGACCGATC+GGG | 0.466215 | 5_1:-29367694 | None:intergenic |
| TACTATCAATGCTGACCGAT+CGG | 0.468391 | 5_1:-29367695 | None:intergenic |
| GACTGACGATGGTTTGGATC+TGG | 0.473146 | 5_1:+29367359 | Msa0727170:CDS |
| TTCATGATCTATAAGCCTAT+TGG | 0.479296 | 5_1:-29367484 | None:intergenic |
| TGTGGTGTAGTAATGTATCT+TGG | 0.479747 | 5_1:-29369286 | None:intergenic |
| GCCATTGCTCTTGCTAGTCT+AGG | 0.481898 | 5_1:+29367585 | Msa0727170:CDS |
| TTGGTGTCAAATTCTTCAGA+TGG | 0.483845 | 5_1:-29369165 | None:intergenic |
| GGGCATCCTTCATTCTTTCG+TGG | 0.485958 | 5_1:-29367509 | None:intergenic |
| CTATGAACGTAGTTCAACTT+GGG | 0.491056 | 5_1:+29366765 | Msa0727170:CDS |
| TGTCAAACAATCTTCAGCAC+AGG | 0.492667 | 5_1:-29367784 | None:intergenic |
| ATCAAGTATGCAATTGATTG+TGG | 0.493118 | 5_1:+29369972 | Msa0727170:CDS |
| TAGAGAGAGGAAGAGGTGAA+GGG | 0.494308 | 5_1:-29366294 | None:intergenic |
| GGCCCATCTCCCTCTGATGA+TGG | 0.494492 | 5_1:+29367022 | Msa0727170:CDS |
| GAGCCCTGAGAAATTTGTTA+GGG | 0.499725 | 5_1:+29367536 | Msa0727170:CDS |
| GGTGGTGGTGAAGCCGAAAT+CGG | 0.500614 | 5_1:+29367294 | Msa0727170:CDS |
| TAAGGCATCTAAACCTAAGA+AGG | 0.501445 | 5_1:+29366904 | Msa0727170:CDS |
| CACACTTAACATACTAGCTA+AGG | 0.502153 | 5_1:-29366341 | None:intergenic |
| AACCATCATCAGAGGGAGAT+GGG | 0.509553 | 5_1:-29367024 | None:intergenic |
| TCAAGTATGCAATTGATTGT+GGG | 0.509821 | 5_1:+29369973 | Msa0727170:CDS |
| GGTGTCTCACTGATGAAGAT+TGG | 0.511624 | 5_1:+29367729 | Msa0727170:CDS |
| AAAGAATGAAGGATGCCCTC+TGG | 0.513107 | 5_1:+29367514 | Msa0727170:CDS |
| AGTACGCGGCTTTCCTCCAC+AGG | 0.514235 | 5_1:+29370022 | Msa0727170:CDS |
| ATTGATAGTAAAAGGGCTAC+AGG | 0.515434 | 5_1:+29367708 | Msa0727170:CDS |
| GAAATTTGTTAGGGCTCCTG+GGG | 0.518314 | 5_1:+29367545 | Msa0727170:CDS |
| GATAAAGGGTACCTGGGAAG+TGG | 0.519562 | 5_1:-29366449 | None:intergenic |
| GAACCATCATCAGAGGGAGA+TGG | 0.523484 | 5_1:-29367025 | None:intergenic |
| CTGACATGTCACAAGTGAAA+GGG | 0.524494 | 5_1:-29369353 | None:intergenic |
| TCTTCCTGAGAGTGCCATAG+TGG | 0.525516 | 5_1:-29369054 | None:intergenic |
| TATGCCACTATGGCACTCTC+AGG | 0.527107 | 5_1:+29369050 | Msa0727170:CDS |
| CTTTCCTCCACAGGAAGATA+CGG | 0.528005 | 5_1:+29370031 | Msa0727170:CDS |
| CATACTTGATGCTATGCTCT+AGG | 0.530128 | 5_1:-29369959 | None:intergenic |
| CAACTACTTCAGGTTCGTAA+TGG | 0.531970 | 5_1:-29369212 | None:intergenic |
| CGATGGTGCTGTTAGCGGGA+TGG | 0.537947 | 5_1:+29369314 | Msa0727170:CDS |
| ATTGTGGGGTAATAGATCAA+TGG | 0.539254 | 5_1:+29369988 | Msa0727170:CDS |
| AATTGTCCCTTCTGGAGACT+CGG | 0.539534 | 5_1:-29366960 | None:intergenic |
| TCTTGCTAGTCTAGGTGGCA+AGG | 0.541756 | 5_1:+29367593 | Msa0727170:CDS |
| CATAACAATTGAAATTTCAA+GGG | 0.543533 | 5_1:-29370328 | None:intergenic |
| TTCTTAGAACCATCATCAGA+GGG | 0.544165 | 5_1:-29367031 | None:intergenic |
| TGAGAGTGCCATAGTGGCAT+AGG | 0.545969 | 5_1:-29369048 | None:intergenic |
| TGGATCTCATGTGACGATCA+AGG | 0.546279 | 5_1:-29368960 | None:intergenic |
| GTAATAGATCAATGGATACT+TGG | 0.547151 | 5_1:+29369996 | Msa0727170:CDS |
| TACAAAACTGATGTGTTACT+TGG | 0.552563 | 5_1:-29370147 | None:intergenic |
| AAATATTGACGTGTTGAAAG+AGG | 0.554016 | 5_1:+29367818 | Msa0727170:CDS |
| TGAACTCCACGAAAGAATGA+AGG | 0.555890 | 5_1:+29367503 | Msa0727170:CDS |
| ACCTTCCTTTACTGAAAATG+TGG | 0.566495 | 5_1:+29367329 | Msa0727170:CDS |
| GGTCAGCATTGATAGTAAAA+GGG | 0.566795 | 5_1:+29367701 | Msa0727170:CDS |
| GAGCTCGATGGTGCTGTTAG+CGG | 0.567047 | 5_1:+29369309 | Msa0727170:CDS |
| AAGAGCAATGGCAACACTAC+CGG | 0.568293 | 5_1:-29367574 | None:intergenic |
| TGGATACTTGGTCGAGTACG+CGG | 0.574750 | 5_1:+29370008 | Msa0727170:CDS |
| CTTCTTAGAACCATCATCAG+AGG | 0.575229 | 5_1:-29367032 | None:intergenic |
| TAGAGCCAGTTAGTTGAACC+AGG | 0.575401 | 5_1:+29370117 | Msa0727170:exon |
| GTGTTACTTGGTGTATCACC+TGG | 0.577764 | 5_1:-29370135 | None:intergenic |
| GCTGACATGTCACAAGTGAA+AGG | 0.578198 | 5_1:-29369354 | None:intergenic |
| TGTGCAGGTGTAACTTGACT+TGG | 0.580944 | 5_1:+29366726 | Msa0727170:intron |
| AGAAGTCGAGTTACAAAGAG+AGG | 0.581961 | 5_1:-29366384 | None:intergenic |
| TTCCTTTACTGAAAATGTGG+AGG | 0.582891 | 5_1:+29367332 | Msa0727170:CDS |
| TGATCTATAAGCCTATTGGC+AGG | 0.586380 | 5_1:-29367480 | None:intergenic |
| GCAAAGGAAAGAGACGACAT+TGG | 0.595465 | 5_1:-29366416 | None:intergenic |
| CTTGATAGCTCGCAATGTCG+TGG | 0.596642 | 5_1:-29368980 | None:intergenic |
| GTCAAACAATCTTCAGCACA+GGG | 0.597382 | 5_1:-29367783 | None:intergenic |
| AGACGTTCGTTCAGCAAGTG+TGG | 0.597817 | 5_1:+29369082 | Msa0727170:CDS |
| CCAAAGCAACAAACAAGAGG+AGG | 0.601556 | 5_1:-29367423 | None:intergenic |
| CTGGTCATGTTGCAATGGCT+AGG | 0.601708 | 5_1:+29366810 | Msa0727170:CDS |
| TCGAAAGCCGAGTCTCCAGA+AGG | 0.601773 | 5_1:+29366953 | Msa0727170:CDS |
| CAAGTATGCAATTGATTGTG+GGG | 0.603065 | 5_1:+29369974 | Msa0727170:CDS |
| GACATGTCAGCATCTGGAGA+CGG | 0.603398 | 5_1:+29369366 | Msa0727170:CDS |
| GCTAGGAAGAAAGCTTCACT+AGG | 0.607054 | 5_1:+29366827 | Msa0727170:CDS |
| ATCTAAACCTAAGAAGGTGT+CGG | 0.614511 | 5_1:+29366910 | Msa0727170:CDS |
| TCTCATGTGACGATCAAGGA+GGG | 0.616712 | 5_1:-29368956 | None:intergenic |
| ATTGCTCTTGCTAGTCTAGG+TGG | 0.617176 | 5_1:+29367588 | Msa0727170:CDS |
| AAGGCGAAGGAAACCTAAAG+AGG | 0.620452 | 5_1:+29367236 | Msa0727170:CDS |
| TAGTGAAAATGAACCTGTGG+TGG | 0.621542 | 5_1:+29366868 | Msa0727170:CDS |
| AAATTTCTCAGGGCTCCAGA+GGG | 0.621942 | 5_1:-29367529 | None:intergenic |
| AAGTGGAAGAAAGTGAGCAA+AGG | 0.622891 | 5_1:-29366432 | None:intergenic |
| CAAATTTCTCAGGGCTCCAG+AGG | 0.624526 | 5_1:-29367530 | None:intergenic |
| ACCTAGACTAGCAAGAGCAA+TGG | 0.625002 | 5_1:-29367586 | None:intergenic |
| CTATTGGCAGGCCTACCTGA+AGG | 0.625259 | 5_1:-29367468 | None:intergenic |
| GAGCCCTAACAAATTTCTCA+GGG | 0.627364 | 5_1:-29367539 | None:intergenic |
| CGAAAGCCGAGTCTCCAGAA+GGG | 0.633282 | 5_1:+29366954 | Msa0727170:CDS |
| ATGTCCTCCGTATCTTCCTG+TGG | 0.633557 | 5_1:-29370038 | None:intergenic |
| GTAATGGACAAACTTTGACC+TGG | 0.633703 | 5_1:-29369196 | None:intergenic |
| GCTCCAAAGCAACAAACAAG+AGG | 0.633915 | 5_1:-29367426 | None:intergenic |
| AGTGCCATAGTGGCATAGGA+AGG | 0.633942 | 5_1:-29369044 | None:intergenic |
| ACAAGTGAAAGGGGTAATTG+GGG | 0.635252 | 5_1:-29369343 | None:intergenic |
| CAGATGGTGTTATTCCGCAT+AGG | 0.638990 | 5_1:-29369149 | None:intergenic |
| TATGAACGTAGTTCAACTTG+GGG | 0.642217 | 5_1:+29366766 | Msa0727170:CDS |
| CGATTACAGAAACAGAGTAT+CGG | 0.647080 | 5_1:+29370087 | Msa0727170:CDS |
| TCCTCCGTATCTTCCTGTGG+AGG | 0.647479 | 5_1:-29370035 | None:intergenic |
| TAAATCTGGTCATGTTGCAA+TGG | 0.648584 | 5_1:+29366805 | Msa0727170:CDS |
| TGACATGTCACAAGTGAAAG+GGG | 0.650172 | 5_1:-29369352 | None:intergenic |
| TGGTGCTGTTAGCGGGATGG+AGG | 0.653175 | 5_1:+29369317 | Msa0727170:CDS |
| ACATAAGCGATACCTACGGT+TGG | 0.654614 | 5_1:+29367400 | Msa0727170:CDS |
| AAATTTGTTAGGGCTCCTGG+GGG | 0.655673 | 5_1:+29367546 | Msa0727170:CDS |
| AAGAGGTGAAGGGTTTAACA+AGG | 0.659842 | 5_1:-29366284 | None:intergenic |
| AAATAATGTTCAAACCCGAT+CGG | 0.661932 | 5_1:+29367680 | Msa0727170:CDS |
| TACTACACCACAGAGCTCGA+TGG | 0.665232 | 5_1:+29369297 | Msa0727170:CDS |
| GCCTAGTGAAAATGAACCTG+TGG | 0.674022 | 5_1:+29366865 | Msa0727170:CDS |
| TCCTCCACAGGAAGATACGG+AGG | 0.688149 | 5_1:+29370034 | Msa0727170:CDS |
| AACAAGAGGAGGCCAACCGT+AGG | 0.689957 | 5_1:-29367412 | None:intergenic |
| GAAGACATAAGCGATACCTA+CGG | 0.698661 | 5_1:+29367396 | Msa0727170:CDS |
| AACAGCACCATCGAGCTCTG+TGG | 0.705418 | 5_1:-29369304 | None:intergenic |
| ATGAACGTAGTTCAACTTGG+GGG | 0.712399 | 5_1:+29366767 | Msa0727170:CDS |
| ATGGTTCTAAGAAGAAAACA+CGG | 0.714612 | 5_1:+29367041 | Msa0727170:CDS |
| ATCTCATGTGACGATCAAGG+AGG | 0.724742 | 5_1:-29368957 | None:intergenic |
| CAAGAACTAGAGTTCCTATG+CGG | 0.738277 | 5_1:+29369135 | Msa0727170:CDS |
| GTGGAGGATGAGACTGACGA+TGG | 0.806142 | 5_1:+29367348 | Msa0727170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTGATTTTTAATCAAA+TGG | + | chr5_1:29366528-29366547 | Msa0727170:intron | 10.0% |
| !!! | ATTTTGATTTTTAATCAAAT+GGG | + | chr5_1:29366529-29366548 | Msa0727170:intron | 10.0% |
| !! | AAAATATAATTCTTCTATAA+AGG | + | chr5_1:29366581-29366600 | Msa0727170:intron | 10.0% |
| !! | CACATATATATTAAAAAAAT+AGG | + | chr5_1:29368131-29368150 | Msa0727170:intron | 10.0% |
| !! | AAATTAGTAGTATTATAATA+AGG | + | chr5_1:29368244-29368263 | Msa0727170:intron | 10.0% |
| !! | AATTAGTAGTATTATAATAA+GGG | + | chr5_1:29368245-29368264 | Msa0727170:intron | 10.0% |
| !!! | AATATAATTTTAGAGGATAA+AGG | + | chr5_1:29367273-29367292 | Msa0727170:CDS | 15.0% |
| !! | ATATATGAGATGATAAATTA+GGG | - | chr5_1:29368224-29368243 | None:intergenic | 15.0% |
| !! | TATATATGAGATGATAAATT+AGG | - | chr5_1:29368225-29368244 | None:intergenic | 15.0% |
| !! | ATTAGTAGTATTATAATAAG+GGG | + | chr5_1:29368246-29368265 | Msa0727170:intron | 15.0% |
| !!! | ATGTATCTATTAATTTGAAA+TGG | + | chr5_1:29368291-29368310 | Msa0727170:intron | 15.0% |
| !!! | TGTATCTATTAATTTGAAAT+GGG | + | chr5_1:29368292-29368311 | Msa0727170:intron | 15.0% |
| !! | TAGATTTCAAGAAAAAAATA+GGG | - | chr5_1:29368625-29368644 | None:intergenic | 15.0% |
| !! | ATAGATTTCAAGAAAAAAAT+AGG | - | chr5_1:29368626-29368645 | None:intergenic | 15.0% |
| !! | ATTTCAACATTATTTAACAA+GGG | - | chr5_1:29369467-29369486 | None:intergenic | 15.0% |
| !! | ATAAAATGTGTATAACAAAT+TGG | - | chr5_1:29370308-29370327 | None:intergenic | 15.0% |
| !!! | TTTTTAAGACTACAGATAAA+GGG | - | chr5_1:29366466-29366485 | None:intergenic | 20.0% |
| !!! | TTTTTTAAGACTACAGATAA+AGG | - | chr5_1:29366467-29366486 | None:intergenic | 20.0% |
| !!! | AGAAGAGAATATAATTTTAG+AGG | + | chr5_1:29367266-29367285 | Msa0727170:CDS | 20.0% |
| !! | ATATATGTGAAAATGATGAA+AGG | - | chr5_1:29368120-29368139 | None:intergenic | 20.0% |
| !!! | ATTATAATAAGGGGTATATT+TGG | + | chr5_1:29368255-29368274 | Msa0727170:intron | 20.0% |
| !! | TACTTAACAGTTAACATATA+AGG | + | chr5_1:29368770-29368789 | Msa0727170:intron | 20.0% |
| !! | TTAATAGACTCAATAACATT+TGG | - | chr5_1:29368891-29368910 | None:intergenic | 20.0% |
| !!! | TTTATGTTTTTCAAATGGAT+TGG | - | chr5_1:29369439-29369458 | None:intergenic | 20.0% |
| !! | AATCCATTTGAAAAACATAA+AGG | + | chr5_1:29369438-29369457 | Msa0727170:intron | 20.0% |
| !!! | TTTCCTTTATGTTTTTCAAA+TGG | - | chr5_1:29369444-29369463 | None:intergenic | 20.0% |
| !! | GATTTCAACATTATTTAACA+AGG | - | chr5_1:29369468-29369487 | None:intergenic | 20.0% |
| !! | AAGAATCATTTAATATGTGA+TGG | + | chr5_1:29369508-29369527 | Msa0727170:intron | 20.0% |
| !!! | ATTTTTGCTATCTTATTTTC+TGG | + | chr5_1:29369590-29369609 | Msa0727170:intron | 20.0% |
| !!! | TTTCCTTTCATAGTAATTTT+AGG | + | chr5_1:29369687-29369706 | Msa0727170:intron | 20.0% |
| !! | TTTTAATCAAATGGGTATCA+TGG | + | chr5_1:29366537-29366556 | Msa0727170:intron | 25.0% |
| !!! | AATTTTGAAGTGAGTATGTT+GGG | + | chr5_1:29366619-29366638 | Msa0727170:intron | 25.0% |
| !!! | ATAATTTTAGAGGATAAAGG+TGG | + | chr5_1:29367276-29367295 | Msa0727170:CDS | 25.0% |
| !! | TTGTTAGAATGATGATGAAA+GGG | - | chr5_1:29368032-29368051 | None:intergenic | 25.0% |
| !! | TTTGTTAGAATGATGATGAA+AGG | - | chr5_1:29368033-29368052 | None:intergenic | 25.0% |
| !! | TTTTAGTAACATACACAGAA+TGG | - | chr5_1:29368174-29368193 | None:intergenic | 25.0% |
| ! | TAGACACATTTGTATACAAA+AGG | - | chr5_1:29368200-29368219 | None:intergenic | 25.0% |
| !! | TCTAAGATGTGCTTATAATT+AGG | + | chr5_1:29368342-29368361 | Msa0727170:intron | 25.0% |
| ! | CTAAGATGTGCTTATAATTA+GGG | + | chr5_1:29368343-29368362 | Msa0727170:intron | 25.0% |
| ! | TAAGATGTGCTTATAATTAG+GGG | + | chr5_1:29368344-29368363 | Msa0727170:intron | 25.0% |
| ! | ATGCATACATTTAAGCAAAA+AGG | + | chr5_1:29368438-29368457 | Msa0727170:intron | 25.0% |
| !! | AACATGAATGATTTTGTAGA+TGG | + | chr5_1:29368465-29368484 | Msa0727170:intron | 25.0% |
| !!! | TCACTAAATAGCTTAGTTTT+GGG | - | chr5_1:29368515-29368534 | None:intergenic | 25.0% |
| !! | TTCACTAAATAGCTTAGTTT+TGG | - | chr5_1:29368516-29368535 | None:intergenic | 25.0% |
| ! | CAAATGATTATTGTGTGAAA+GGG | - | chr5_1:29368565-29368584 | None:intergenic | 25.0% |
| ! | ATGATTCTTCTCATAATAGT+GGG | - | chr5_1:29369497-29369516 | None:intergenic | 25.0% |
| ! | AATGATTCTTCTCATAATAG+TGG | - | chr5_1:29369498-29369517 | None:intergenic | 25.0% |
| ! | TCTCCTAAAATTACTATGAA+AGG | - | chr5_1:29369693-29369712 | None:intergenic | 25.0% |
| !!! | TAATCGATTTTATGCCATAA+GGG | - | chr5_1:29370073-29370092 | None:intergenic | 25.0% |
| !! | AATGTGTTTTCAATTGATAG+AGG | + | chr5_1:29370229-29370248 | Msa0727170:three_prime_UTR | 25.0% |
| ! | AAACCTAAGAACTAAATCTA+AGG | - | chr5_1:29370263-29370282 | None:intergenic | 25.0% |
| !!! | AGAAGATTTGTTTTAGAGAG+AGG | - | chr5_1:29366310-29366329 | None:intergenic | 30.0% |
| TTAACATACTAGCTAAGGTT+TGG | - | chr5_1:29366339-29366358 | None:intergenic | 30.0% | |
| !!! | CAATTTTGAAGTGAGTATGT+TGG | + | chr5_1:29366618-29366637 | Msa0727170:intron | 30.0% |
| TTAGTGTATAATTCTTGTGC+TGG | + | chr5_1:29366669-29366688 | Msa0727170:intron | 30.0% | |
| CTCAAAATTCAGTGTAAATC+TGG | + | chr5_1:29366791-29366810 | Msa0727170:CDS | 30.0% | |
| !! | ATGGTTCTAAGAAGAAAACA+CGG | + | chr5_1:29367041-29367060 | Msa0727170:CDS | 30.0% |
| GTGTTAGTTAAACGTTGATA+TGG | + | chr5_1:29367145-29367164 | Msa0727170:intron | 30.0% | |
| AGGAAGTGAAAAAAGTTACA+AGG | + | chr5_1:29367217-29367236 | Msa0727170:CDS | 30.0% | |
| TCTTCTTTATTCTCCTCTTT+AGG | - | chr5_1:29367252-29367271 | None:intergenic | 30.0% | |
| TTGGATCTGGAAAAATATGA+CGG | + | chr5_1:29367372-29367391 | Msa0727170:CDS | 30.0% | |
| TTCATGATCTATAAGCCTAT+TGG | - | chr5_1:29367487-29367506 | None:intergenic | 30.0% | |
| AAACTTGCAGATGATGAATA+TGG | + | chr5_1:29367630-29367649 | Msa0727170:CDS | 30.0% | |
| AAATAATGTTCAAACCCGAT+CGG | + | chr5_1:29367680-29367699 | Msa0727170:CDS | 30.0% | |
| AAATATTGACGTGTTGAAAG+AGG | + | chr5_1:29367818-29367837 | Msa0727170:CDS | 30.0% | |
| ATATGTTCTAGTCTCATCAT+TGG | + | chr5_1:29367908-29367927 | Msa0727170:intron | 30.0% | |
| CCAAATGATTATTGTGTGAA+AGG | - | chr5_1:29368566-29368585 | None:intergenic | 30.0% | |
| CCTTTCACACAATAATCATT+TGG | + | chr5_1:29368563-29368582 | Msa0727170:intron | 30.0% | |
| CTATCATTTGTTTAGAAACG+TGG | + | chr5_1:29368642-29368661 | Msa0727170:intron | 30.0% | |
| !!! | CAGCATTACTTTTTGGTTTA+TGG | - | chr5_1:29368723-29368742 | None:intergenic | 30.0% |
| AAACCAAAAAGTAATGCTGT+TGG | + | chr5_1:29368724-29368743 | Msa0727170:intron | 30.0% | |
| TTGATTGTATGTCAGATTCT+CGG | + | chr5_1:29368802-29368821 | Msa0727170:intron | 30.0% | |
| !! | ATCAAGATTGCAAAGCATTT+TGG | + | chr5_1:29368997-29369016 | Msa0727170:CDS | 30.0% |
| ! | TTAAGATTTTCATGCCATAG+TGG | - | chr5_1:29369240-29369259 | None:intergenic | 30.0% |
| ACTATGGCATGAAAATCTTA+AGG | + | chr5_1:29369239-29369258 | Msa0727170:CDS | 30.0% | |
| !!! | AAGGTTTTGTTTGTGACTAA+TGG | + | chr5_1:29369258-29369277 | Msa0727170:CDS | 30.0% |
| CTTTGTTGAATTGCTTCATA+AGG | - | chr5_1:29369541-29369560 | None:intergenic | 30.0% | |
| AGACAATATCACGATTGAAT+CGG | + | chr5_1:29369710-29369729 | Msa0727170:intron | 30.0% | |
| CCTTTATCAGTTATCAAATC+AGG | - | chr5_1:29369936-29369955 | None:intergenic | 30.0% | |
| ! | CCTGATTTGATAACTGATAA+AGG | + | chr5_1:29369933-29369952 | Msa0727170:CDS | 30.0% |
| ATCAAGTATGCAATTGATTG+TGG | + | chr5_1:29369972-29369991 | Msa0727170:CDS | 30.0% | |
| TCAAGTATGCAATTGATTGT+GGG | + | chr5_1:29369973-29369992 | Msa0727170:CDS | 30.0% | |
| GTAATAGATCAATGGATACT+TGG | + | chr5_1:29369996-29370015 | Msa0727170:CDS | 30.0% | |
| !! | GTAATCGATTTTATGCCATA+AGG | - | chr5_1:29370074-29370093 | None:intergenic | 30.0% |
| ! | TACAAAACTGATGTGTTACT+TGG | - | chr5_1:29370150-29370169 | None:intergenic | 30.0% |
| !! | TTGCCTTAGATTTAGTTCTT+AGG | + | chr5_1:29370257-29370276 | Msa0727170:three_prime_UTR | 30.0% |
| ! | AGGTTTTTGTATCTCTCTTT+TGG | + | chr5_1:29370277-29370296 | Msa0727170:three_prime_UTR | 30.0% |
| !!! | TTTGTTTTAGAGAGAGGAAG+AGG | - | chr5_1:29366304-29366323 | None:intergenic | 35.0% |
| CACACTTAACATACTAGCTA+AGG | - | chr5_1:29366344-29366363 | None:intergenic | 35.0% | |
| !! | TTGGGTTTCAGTTCAAGTTT+TGG | + | chr5_1:29366637-29366656 | Msa0727170:intron | 35.0% |
| TCTATGAACGTAGTTCAACT+TGG | + | chr5_1:29366764-29366783 | Msa0727170:CDS | 35.0% | |
| CTATGAACGTAGTTCAACTT+GGG | + | chr5_1:29366765-29366784 | Msa0727170:CDS | 35.0% | |
| TATGAACGTAGTTCAACTTG+GGG | + | chr5_1:29366766-29366785 | Msa0727170:CDS | 35.0% | |
| TAAATCTGGTCATGTTGCAA+TGG | + | chr5_1:29366805-29366824 | Msa0727170:CDS | 35.0% | |
| GGTGGAAAAAAAAGCAACTA+AGG | + | chr5_1:29366886-29366905 | Msa0727170:CDS | 35.0% | |
| ! | TAAGGCATCTAAACCTAAGA+AGG | + | chr5_1:29366904-29366923 | Msa0727170:CDS | 35.0% |
| ! | ATCTAAACCTAAGAAGGTGT+CGG | + | chr5_1:29366910-29366929 | Msa0727170:CDS | 35.0% |
| AACAAATCAATTGTCCCTTC+TGG | - | chr5_1:29366971-29366990 | None:intergenic | 35.0% | |
| !! | AGAAGGGACAATTGATTTGT+TGG | + | chr5_1:29366970-29366989 | Msa0727170:CDS | 35.0% |
| GATAGTGCTTCTATTGTAGA+AGG | + | chr5_1:29367001-29367020 | Msa0727170:CDS | 35.0% | |
| TTCTTAGAACCATCATCAGA+GGG | - | chr5_1:29367034-29367053 | None:intergenic | 35.0% | |
| GGAAGAAGAGAAAGAAGTTA+AGG | + | chr5_1:29367197-29367216 | Msa0727170:CDS | 35.0% | |
| TGAAAAAAGTTACAAGGCGA+AGG | + | chr5_1:29367223-29367242 | Msa0727170:CDS | 35.0% | |
| !! | ATTTTAGAGGATAAAGGTGG+TGG | + | chr5_1:29367279-29367298 | Msa0727170:CDS | 35.0% |
| !! | TTCATCTATGTCACCGATTT+CGG | - | chr5_1:29367310-29367329 | None:intergenic | 35.0% |
| ACCTTCCTTTACTGAAAATG+TGG | + | chr5_1:29367329-29367348 | Msa0727170:CDS | 35.0% | |
| ! | TCCACATTTTCAGTAAAGGA+AGG | - | chr5_1:29367333-29367352 | None:intergenic | 35.0% |
| TTCCTTTACTGAAAATGTGG+AGG | + | chr5_1:29367332-29367351 | Msa0727170:CDS | 35.0% | |
| ! | ATCCTCCACATTTTCAGTAA+AGG | - | chr5_1:29367337-29367356 | None:intergenic | 35.0% |
| !! | GGTCAGCATTGATAGTAAAA+GGG | + | chr5_1:29367701-29367720 | Msa0727170:CDS | 35.0% |
| ! | ATTGATAGTAAAAGGGCTAC+AGG | + | chr5_1:29367708-29367727 | Msa0727170:CDS | 35.0% |
| CACTGATGAAGATTGGTAAA+AGG | + | chr5_1:29367736-29367755 | Msa0727170:CDS | 35.0% | |
| ! | TTGGTGATATAGCAGCATTA+TGG | + | chr5_1:29367927-29367946 | Msa0727170:intron | 35.0% |
| GATGAAAGGGCTTACAAATA+CGG | - | chr5_1:29368019-29368038 | None:intergenic | 35.0% | |
| AAGGAGCTTATGAATAGAGA+TGG | - | chr5_1:29368101-29368120 | None:intergenic | 35.0% | |
| AACGATGTTGTCTATTGCAA+TGG | + | chr5_1:29368384-29368403 | Msa0727170:intron | 35.0% | |
| !!! | TAGCTTAGTTTTGGGATAGT+TGG | - | chr5_1:29368507-29368526 | None:intergenic | 35.0% |
| !! | CAACCAACAGCATTACTTTT+TGG | - | chr5_1:29368730-29368749 | None:intergenic | 35.0% |
| !!! | TCTGTTTTGTTTTAGCTGCT+TGG | + | chr5_1:29368850-29368869 | Msa0727170:intron | 35.0% |
| !!! | CTGTTTTGTTTTAGCTGCTT+GGG | + | chr5_1:29368851-29368870 | Msa0727170:intron | 35.0% |
| ATTAAGAACACATCTCATGC+AGG | + | chr5_1:29368906-29368925 | Msa0727170:intron | 35.0% | |
| !! | TTGGTGTCAAATTCTTCAGA+TGG | - | chr5_1:29369168-29369187 | None:intergenic | 35.0% |
| TGTGGTGTAGTAATGTATCT+TGG | - | chr5_1:29369289-29369308 | None:intergenic | 35.0% | |
| GAAGCAATTCAACAAAGTAC+TGG | + | chr5_1:29369544-29369563 | Msa0727170:intron | 35.0% | |
| GCTTAATGAATGCCATAACA+AGG | + | chr5_1:29369732-29369751 | Msa0727170:intron | 35.0% | |
| GTAATATAAGTCCTGAGTGT+TGG | - | chr5_1:29369760-29369779 | None:intergenic | 35.0% | |
| !! | TGAAACATCTCTCTAAAGCT+AGG | + | chr5_1:29369851-29369870 | Msa0727170:intron | 35.0% |
| CAAGTATGCAATTGATTGTG+GGG | + | chr5_1:29369974-29369993 | Msa0727170:CDS | 35.0% | |
| ATTGTGGGGTAATAGATCAA+TGG | + | chr5_1:29369988-29370007 | Msa0727170:CDS | 35.0% | |
| CGATTACAGAAACAGAGTAT+CGG | + | chr5_1:29370087-29370106 | Msa0727170:CDS | 35.0% | |
| AAGAGGTGAAGGGTTTAACA+AGG | - | chr5_1:29366287-29366306 | None:intergenic | 40.0% | |
| AGAAGTCGAGTTACAAAGAG+AGG | - | chr5_1:29366387-29366406 | None:intergenic | 40.0% | |
| AAGTGGAAGAAAGTGAGCAA+AGG | - | chr5_1:29366435-29366454 | None:intergenic | 40.0% | |
| !! | ACTACAGATAAAGGGTACCT+GGG | - | chr5_1:29366458-29366477 | None:intergenic | 40.0% |
| !! | ATTCTTGTGCTGGTTGAATG+TGG | + | chr5_1:29366679-29366698 | Msa0727170:intron | 40.0% |
| TCTTGTCTTTGCAATTGTGC+AGG | + | chr5_1:29366711-29366730 | Msa0727170:intron | 40.0% | |
| ATGAACGTAGTTCAACTTGG+GGG | + | chr5_1:29366767-29366786 | Msa0727170:CDS | 40.0% | |
| ! | ACCACAGGTTCATTTTCACT+AGG | - | chr5_1:29366869-29366888 | None:intergenic | 40.0% |
| TAGTGAAAATGAACCTGTGG+TGG | + | chr5_1:29366868-29366887 | Msa0727170:CDS | 40.0% | |
| !!! | GTTGCTTTTTTTTCCACCAC+AGG | - | chr5_1:29366884-29366903 | None:intergenic | 40.0% |
| CTTCTTAGAACCATCATCAG+AGG | - | chr5_1:29367035-29367054 | None:intergenic | 40.0% | |
| ACACGGAAGACTCGAAAAAA+AGG | + | chr5_1:29367058-29367077 | Msa0727170:CDS | 40.0% | |
| GAAGACATAAGCGATACCTA+CGG | + | chr5_1:29367396-29367415 | Msa0727170:CDS | 40.0% | |
| TGATCTATAAGCCTATTGGC+AGG | - | chr5_1:29367483-29367502 | None:intergenic | 40.0% | |
| TGAACTCCACGAAAGAATGA+AGG | + | chr5_1:29367503-29367522 | Msa0727170:CDS | 40.0% | |
| !! | GAGCCCTGAGAAATTTGTTA+GGG | + | chr5_1:29367536-29367555 | Msa0727170:CDS | 40.0% |
| GAGCCCTAACAAATTTCTCA+GGG | - | chr5_1:29367542-29367561 | None:intergenic | 40.0% | |
| !! | AGAAATTTGTTAGGGCTCCT+GGG | + | chr5_1:29367544-29367563 | Msa0727170:CDS | 40.0% |
| TACTATCAATGCTGACCGAT+CGG | - | chr5_1:29367698-29367717 | None:intergenic | 40.0% | |
| !! | CGGTCAGCATTGATAGTAAA+AGG | + | chr5_1:29367700-29367719 | Msa0727170:CDS | 40.0% |
| GTCAAACAATCTTCAGCACA+GGG | - | chr5_1:29367786-29367805 | None:intergenic | 40.0% | |
| TGTCAAACAATCTTCAGCAC+AGG | - | chr5_1:29367787-29367806 | None:intergenic | 40.0% | |
| TTGACGTGTTGAAAGAGGTA+CGG | + | chr5_1:29367823-29367842 | Msa0727170:intron | 40.0% | |
| GAGCTTATGAATAGAGATGG+AGG | - | chr5_1:29368098-29368117 | None:intergenic | 40.0% | |
| TTAGAAACGTGGCGACAATA+AGG | + | chr5_1:29368653-29368672 | Msa0727170:intron | 40.0% | |
| GACAATAAGGATTGAACCCT+AGG | + | chr5_1:29368666-29368685 | Msa0727170:intron | 40.0% | |
| TCTATGTCCAAGTTGTCCTA+GGG | - | chr5_1:29368685-29368704 | None:intergenic | 40.0% | |
| TTCTATGTCCAAGTTGTCCT+AGG | - | chr5_1:29368686-29368705 | None:intergenic | 40.0% | |
| CAACTTGGACATAGAAGCTT+TGG | + | chr5_1:29368690-29368709 | Msa0727170:intron | 40.0% | |
| GTTGGTTGAAAGCTCATGAA+TGG | + | chr5_1:29368742-29368761 | Msa0727170:intron | 40.0% | |
| !! | GATTGCAAAGCATTTTGGAG+CGG | + | chr5_1:29369002-29369021 | Msa0727170:CDS | 40.0% |
| TAAACCTTCCTATGCCACTA+TGG | + | chr5_1:29369040-29369059 | Msa0727170:CDS | 40.0% | |
| CAAGAACTAGAGTTCCTATG+CGG | + | chr5_1:29369135-29369154 | Msa0727170:CDS | 40.0% | |
| TTGACACCAAAAACAATGCC+AGG | + | chr5_1:29369178-29369197 | Msa0727170:CDS | 40.0% | |
| ! | CTTTGACCTGGCATTGTTTT+TGG | - | chr5_1:29369187-29369206 | None:intergenic | 40.0% |
| !! | GTAATGGACAAACTTTGACC+TGG | - | chr5_1:29369199-29369218 | None:intergenic | 40.0% |
| ! | CAACTACTTCAGGTTCGTAA+TGG | - | chr5_1:29369215-29369234 | None:intergenic | 40.0% |
| ACAAGTGAAAGGGGTAATTG+GGG | - | chr5_1:29369346-29369365 | None:intergenic | 40.0% | |
| CACAAGTGAAAGGGGTAATT+GGG | - | chr5_1:29369347-29369366 | None:intergenic | 40.0% | |
| TCACAAGTGAAAGGGGTAAT+TGG | - | chr5_1:29369348-29369367 | None:intergenic | 40.0% | |
| TGACATGTCACAAGTGAAAG+GGG | - | chr5_1:29369355-29369374 | None:intergenic | 40.0% | |
| CTGACATGTCACAAGTGAAA+GGG | - | chr5_1:29369356-29369375 | None:intergenic | 40.0% | |
| ! | TTTCTGGAAAATCAGCCGAT+TGG | + | chr5_1:29369606-29369625 | Msa0727170:intron | 40.0% |
| CATACTTGATGCTATGCTCT+AGG | - | chr5_1:29369962-29369981 | None:intergenic | 40.0% | |
| ! | GATTTTATGCCATAAGGGTC+AGG | - | chr5_1:29370068-29370087 | None:intergenic | 40.0% |
| TATCACCTGGTTCAACTAAC+TGG | - | chr5_1:29370125-29370144 | None:intergenic | 40.0% | |
| TAGAGAGAGGAAGAGGTGAA+GGG | - | chr5_1:29366297-29366316 | None:intergenic | 45.0% | |
| TTAGAGAGAGGAAGAGGTGA+AGG | - | chr5_1:29366298-29366317 | None:intergenic | 45.0% | |
| GCAAAGGAAAGAGACGACAT+TGG | - | chr5_1:29366419-29366438 | None:intergenic | 45.0% | |
| !! | GACTACAGATAAAGGGTACC+TGG | - | chr5_1:29366459-29366478 | None:intergenic | 45.0% |
| TGTGCAGGTGTAACTTGACT+TGG | + | chr5_1:29366726-29366745 | Msa0727170:intron | 45.0% | |
| GCTAGGAAGAAAGCTTCACT+AGG | + | chr5_1:29366827-29366846 | Msa0727170:CDS | 45.0% | |
| GCCTAGTGAAAATGAACCTG+TGG | + | chr5_1:29366865-29366884 | Msa0727170:CDS | 45.0% | |
| ! | AATTGTCCCTTCTGGAGACT+CGG | - | chr5_1:29366963-29366982 | None:intergenic | 45.0% |
| AACCATCATCAGAGGGAGAT+GGG | - | chr5_1:29367027-29367046 | None:intergenic | 45.0% | |
| !! | TGCATCTAGTTCTGCTGCTT+TGG | + | chr5_1:29367176-29367195 | Msa0727170:CDS | 45.0% |
| AAGGCGAAGGAAACCTAAAG+AGG | + | chr5_1:29367236-29367255 | Msa0727170:CDS | 45.0% | |
| ACATAAGCGATACCTACGGT+TGG | + | chr5_1:29367400-29367419 | Msa0727170:CDS | 45.0% | |
| CCAAAGCAACAAACAAGAGG+AGG | - | chr5_1:29367426-29367445 | None:intergenic | 45.0% | |
| ! | CCTCCTCTTGTTTGTTGCTT+TGG | + | chr5_1:29367423-29367442 | Msa0727170:CDS | 45.0% |
| GCTCCAAAGCAACAAACAAG+AGG | - | chr5_1:29367429-29367448 | None:intergenic | 45.0% | |
| ! | CAACATGCTTTTGTGCCTTC+AGG | + | chr5_1:29367453-29367472 | Msa0727170:CDS | 45.0% |
| ! | ATGCTTTTGTGCCTTCAGGT+AGG | + | chr5_1:29367457-29367476 | Msa0727170:CDS | 45.0% |
| AAAGAATGAAGGATGCCCTC+TGG | + | chr5_1:29367514-29367533 | Msa0727170:CDS | 45.0% | |
| AAATTTCTCAGGGCTCCAGA+GGG | - | chr5_1:29367532-29367551 | None:intergenic | 45.0% | |
| ! | GGAGCCCTGAGAAATTTGTT+AGG | + | chr5_1:29367535-29367554 | Msa0727170:CDS | 45.0% |
| GGAGCCCTAACAAATTTCTC+AGG | - | chr5_1:29367543-29367562 | None:intergenic | 45.0% | |
| !! | GAGAAATTTGTTAGGGCTCC+TGG | + | chr5_1:29367543-29367562 | Msa0727170:CDS | 45.0% |
| !! | GAAATTTGTTAGGGCTCCTG+GGG | + | chr5_1:29367545-29367564 | Msa0727170:CDS | 45.0% |
| !! | AAATTTGTTAGGGCTCCTGG+GGG | + | chr5_1:29367546-29367565 | Msa0727170:CDS | 45.0% |
| AAGAGCAATGGCAACACTAC+CGG | - | chr5_1:29367577-29367596 | None:intergenic | 45.0% | |
| ACCTAGACTAGCAAGAGCAA+TGG | - | chr5_1:29367589-29367608 | None:intergenic | 45.0% | |
| ! | ATTGCTCTTGCTAGTCTAGG+TGG | + | chr5_1:29367588-29367607 | Msa0727170:CDS | 45.0% |
| !!! | AGGTGGCAAGGTTGCTTTTA+TGG | + | chr5_1:29367605-29367624 | Msa0727170:CDS | 45.0% |
| !!! | GGTGGCAAGGTTGCTTTTAT+GGG | + | chr5_1:29367606-29367625 | Msa0727170:CDS | 45.0% |
| ACTATCAATGCTGACCGATC+GGG | - | chr5_1:29367697-29367716 | None:intergenic | 45.0% | |
| GGTGTCTCACTGATGAAGAT+TGG | + | chr5_1:29367729-29367748 | Msa0727170:CDS | 45.0% | |
| GATTGAACCCTAGGACAACT+TGG | + | chr5_1:29368675-29368694 | Msa0727170:intron | 45.0% | |
| TCTCATGTGACGATCAAGGA+GGG | - | chr5_1:29368959-29368978 | None:intergenic | 45.0% | |
| ATCTCATGTGACGATCAAGG+AGG | - | chr5_1:29368960-29368979 | None:intergenic | 45.0% | |
| TGGATCTCATGTGACGATCA+AGG | - | chr5_1:29368963-29368982 | None:intergenic | 45.0% | |
| !! | CAGATGGTGTTATTCCGCAT+AGG | - | chr5_1:29369152-29369171 | None:intergenic | 45.0% |
| CATAGTGGTGCAACTACTTC+AGG | - | chr5_1:29369225-29369244 | None:intergenic | 45.0% | |
| CTGAAGTAGTTGCACCACTA+TGG | + | chr5_1:29369223-29369242 | Msa0727170:CDS | 45.0% | |
| GCTGACATGTCACAAGTGAA+AGG | - | chr5_1:29369357-29369376 | None:intergenic | 45.0% | |
| ACTTGTGACATGTCAGCATC+TGG | + | chr5_1:29369360-29369379 | Msa0727170:CDS | 45.0% | |
| ATCAGCCGATTGGACTTTGT+TGG | + | chr5_1:29369616-29369635 | Msa0727170:intron | 45.0% | |
| CCTTGCCAACAAAGTCCAAT+CGG | - | chr5_1:29369624-29369643 | None:intergenic | 45.0% | |
| !! | TGAGTGTTGGCTCCTTGTTA+TGG | - | chr5_1:29369747-29369766 | None:intergenic | 45.0% |
| ATAACAAGGAGCCAACACTC+AGG | + | chr5_1:29369746-29369765 | Msa0727170:intron | 45.0% | |
| CTTTCCTCCACAGGAAGATA+CGG | + | chr5_1:29370031-29370050 | Msa0727170:CDS | 45.0% | |
| GACATTACTCCTGACCCTTA+TGG | + | chr5_1:29370056-29370075 | Msa0727170:CDS | 45.0% | |
| TAGAGCCAGTTAGTTGAACC+AGG | + | chr5_1:29370117-29370136 | Msa0727170:exon | 45.0% | |
| !! | GTGTTACTTGGTGTATCACC+TGG | - | chr5_1:29370138-29370157 | None:intergenic | 45.0% |
| CTCACTTTCTTCCACTTCCC+AGG | + | chr5_1:29366438-29366457 | Msa0727170:CDS | 50.0% | |
| !! | GATAAAGGGTACCTGGGAAG+TGG | - | chr5_1:29366452-29366471 | None:intergenic | 50.0% |
| CTGGTCATGTTGCAATGGCT+AGG | + | chr5_1:29366810-29366829 | Msa0727170:CDS | 50.0% | |
| GTCTTTGCCGACACCTTCTT+AGG | - | chr5_1:29366920-29366939 | None:intergenic | 50.0% | |
| GAACCATCATCAGAGGGAGA+TGG | - | chr5_1:29367028-29367047 | None:intergenic | 50.0% | |
| GGATGAGACTGACGATGGTT+TGG | + | chr5_1:29367353-29367372 | Msa0727170:CDS | 50.0% | |
| ! | GACTGACGATGGTTTGGATC+TGG | + | chr5_1:29367359-29367378 | Msa0727170:CDS | 50.0% |
| GGGCATCCTTCATTCTTTCG+TGG | - | chr5_1:29367512-29367531 | None:intergenic | 50.0% | |
| CAAATTTCTCAGGGCTCCAG+AGG | - | chr5_1:29367533-29367552 | None:intergenic | 50.0% | |
| ! | GCCATTGCTCTTGCTAGTCT+AGG | + | chr5_1:29367585-29367604 | Msa0727170:CDS | 50.0% |
| ! | TCTTGCTAGTCTAGGTGGCA+AGG | + | chr5_1:29367593-29367612 | Msa0727170:CDS | 50.0% |
| GGGCTTACAAATACGGACAG+AGG | - | chr5_1:29368012-29368031 | None:intergenic | 50.0% | |
| ! | CTTGATAGCTCGCAATGTCG+TGG | - | chr5_1:29368983-29369002 | None:intergenic | 50.0% |
| AGTGCCATAGTGGCATAGGA+AGG | - | chr5_1:29369047-29369066 | None:intergenic | 50.0% | |
| !! | TGAGAGTGCCATAGTGGCAT+AGG | - | chr5_1:29369051-29369070 | None:intergenic | 50.0% |
| TATGCCACTATGGCACTCTC+AGG | + | chr5_1:29369050-29369069 | Msa0727170:CDS | 50.0% | |
| !! | TCTTCCTGAGAGTGCCATAG+TGG | - | chr5_1:29369057-29369076 | None:intergenic | 50.0% |
| AGACGTTCGTTCAGCAAGTG+TGG | + | chr5_1:29369082-29369101 | Msa0727170:CDS | 50.0% | |
| TACTACACCACAGAGCTCGA+TGG | + | chr5_1:29369297-29369316 | Msa0727170:CDS | 50.0% | |
| GACATGTCAGCATCTGGAGA+CGG | + | chr5_1:29369366-29369385 | Msa0727170:CDS | 50.0% | |
| CCGATTGGACTTTGTTGGCA+AGG | + | chr5_1:29369621-29369640 | Msa0727170:intron | 50.0% | |
| TGGATACTTGGTCGAGTACG+CGG | + | chr5_1:29370008-29370027 | Msa0727170:CDS | 50.0% | |
| ATGTCCTCCGTATCTTCCTG+TGG | - | chr5_1:29370041-29370060 | None:intergenic | 50.0% | |
| TCGAAAGCCGAGTCTCCAGA+AGG | + | chr5_1:29366953-29366972 | Msa0727170:CDS | 55.0% | |
| CGAAAGCCGAGTCTCCAGAA+GGG | + | chr5_1:29366954-29366973 | Msa0727170:CDS | 55.0% | |
| ! | GGTGGTGGTGAAGCCGAAAT+CGG | + | chr5_1:29367294-29367313 | Msa0727170:CDS | 55.0% |
| GTGGAGGATGAGACTGACGA+TGG | + | chr5_1:29367348-29367367 | Msa0727170:CDS | 55.0% | |
| AACAAGAGGAGGCCAACCGT+AGG | - | chr5_1:29367415-29367434 | None:intergenic | 55.0% | |
| CTATTGGCAGGCCTACCTGA+AGG | - | chr5_1:29367471-29367490 | None:intergenic | 55.0% | |
| CTTCAGGTAGGCCTGCCAAT+AGG | + | chr5_1:29367469-29367488 | Msa0727170:CDS | 55.0% | |
| AACAGCACCATCGAGCTCTG+TGG | - | chr5_1:29369307-29369326 | None:intergenic | 55.0% | |
| !! | GAGCTCGATGGTGCTGTTAG+CGG | + | chr5_1:29369309-29369328 | Msa0727170:CDS | 55.0% |
| !! | AGCTCGATGGTGCTGTTAGC+GGG | + | chr5_1:29369310-29369329 | Msa0727170:CDS | 55.0% |
| TCTGGAGACGGCATTGTTGC+AGG | + | chr5_1:29369378-29369397 | Msa0727170:CDS | 55.0% | |
| TCCTCCACAGGAAGATACGG+AGG | + | chr5_1:29370034-29370053 | Msa0727170:CDS | 55.0% | |
| TCCTCCGTATCTTCCTGTGG+AGG | - | chr5_1:29370038-29370057 | None:intergenic | 55.0% | |
| GGCCCATCTCCCTCTGATGA+TGG | + | chr5_1:29367022-29367041 | Msa0727170:CDS | 60.0% | |
| !! | CGATGGTGCTGTTAGCGGGA+TGG | + | chr5_1:29369314-29369333 | Msa0727170:CDS | 60.0% |
| !! | TGGTGCTGTTAGCGGGATGG+AGG | + | chr5_1:29369317-29369336 | Msa0727170:CDS | 60.0% |
| AGTACGCGGCTTTCCTCCAC+AGG | + | chr5_1:29370022-29370041 | Msa0727170:CDS | 60.0% | |
| ACACTACCGGCACAACCCCC+AGG | - | chr5_1:29367564-29367583 | None:intergenic | 65.0% | |
| AGGGCTCCTGGGGGTTGTGC+CGG | + | chr5_1:29367555-29367574 | Msa0727170:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 29366277 | 29370348 | 29366277 | ID=Msa0727170;Name=Msa0727170 |
| chr5_1 | mRNA | 29366277 | 29370348 | 29366277 | ID=Msa0727170-mRNA-1;Parent=Msa0727170;Name=Msa0727170-mRNA-1;_AED=0.04;_eAED=0.04;_QI=142|1|1|1|1|1|5|215|583 |
| chr5_1 | exon | 29366277 | 29366459 | 29366277 | ID=Msa0727170-mRNA-1:exon:10003;Parent=Msa0727170-mRNA-1 |
| chr5_1 | exon | 29366733 | 29367079 | 29366733 | ID=Msa0727170-mRNA-1:exon:10004;Parent=Msa0727170-mRNA-1 |
| chr5_1 | exon | 29367175 | 29367839 | 29367175 | ID=Msa0727170-mRNA-1:exon:10005;Parent=Msa0727170-mRNA-1 |
| chr5_1 | exon | 29368928 | 29369399 | 29368928 | ID=Msa0727170-mRNA-1:exon:10006;Parent=Msa0727170-mRNA-1 |
| chr5_1 | exon | 29369907 | 29370348 | 29369907 | ID=Msa0727170-mRNA-1:exon:10007;Parent=Msa0727170-mRNA-1 |
| chr5_1 | five_prime_UTR | 29366277 | 29366418 | 29366277 | ID=Msa0727170-mRNA-1:five_prime_utr;Parent=Msa0727170-mRNA-1 |
| chr5_1 | CDS | 29366419 | 29366459 | 29366419 | ID=Msa0727170-mRNA-1:cds;Parent=Msa0727170-mRNA-1 |
| chr5_1 | CDS | 29366733 | 29367079 | 29366733 | ID=Msa0727170-mRNA-1:cds;Parent=Msa0727170-mRNA-1 |
| chr5_1 | CDS | 29367175 | 29367839 | 29367175 | ID=Msa0727170-mRNA-1:cds;Parent=Msa0727170-mRNA-1 |
| chr5_1 | CDS | 29368928 | 29369399 | 29368928 | ID=Msa0727170-mRNA-1:cds;Parent=Msa0727170-mRNA-1 |
| chr5_1 | CDS | 29369907 | 29370133 | 29369907 | ID=Msa0727170-mRNA-1:cds;Parent=Msa0727170-mRNA-1 |
| chr5_1 | three_prime_UTR | 29370134 | 29370348 | 29370134 | ID=Msa0727170-mRNA-1:three_prime_utr;Parent=Msa0727170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
