Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0850880 | GAU29153.1 | 70.000 | 90 | 19 | 1 | 1 | 82 | 26 | 115 | 8.60e-32 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0850880 | sp|Q8LMR2|DCL1_ORYSJ | 84.483 | 58 | 9 | 0 | 112 | 169 | 502 | 559 | 5.18e-26 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0850880 | A0A2Z6MH44 | 70.000 | 90 | 19 | 1 | 1 | 82 | 26 | 115 | 4.11e-32 | 123 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0701010 | Msa0850880 | 0.814417 | 1.556942e-51 | -8.615850e-47 |
| Msa0768370 | Msa0850880 | 0.804158 | 2.470067e-49 | -8.615850e-47 |
| Msa0814800 | Msa0850880 | 0.848188 | 7.187559e-60 | -8.615850e-47 |
| Msa0479340 | Msa0850880 | 0.802088 | 6.622972e-49 | -8.615850e-47 |
| Msa0523940 | Msa0850880 | 0.814089 | 1.839730e-51 | -8.615850e-47 |
| Msa0850880 | Msa0877250 | 0.808755 | 2.650135e-50 | -8.615850e-47 |
| Msa0850880 | Msa0899430 | 0.810317 | 1.223891e-50 | -8.615850e-47 |
| Msa0850880 | Msa0927380 | 0.812028 | 5.209679e-51 | -8.615850e-47 |
| Msa0850880 | Msa0958550 | 0.809173 | 2.156470e-50 | -8.615850e-47 |
| Msa0850880 | Msa1244250 | 0.807239 | 5.569923e-50 | -8.615850e-47 |
| Msa0850880 | Msa1276890 | 0.800820 | 1.204275e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0850880 | MtrunA17_Chr6g0454541 | 71.111 | 90 | 18 | 1 | 1 | 82 | 327 | 416 | 3.09e-34 | 125 |
| Msa0850880 | MtrunA17_Chr7g0276451 | 89.831 | 59 | 6 | 0 | 112 | 170 | 493 | 551 | 7.05e-29 | 112 |
| Msa0850880 | MtrunA17_Chr7g0218721 | 62.025 | 79 | 22 | 1 | 12 | 82 | 309 | 387 | 1.06e-24 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0850880 | AT5G15510.4 | 65.823 | 79 | 19 | 1 | 12 | 82 | 344 | 422 | 2.21e-28 | 110 |
| Msa0850880 | AT5G15510.3 | 65.823 | 79 | 19 | 1 | 12 | 82 | 344 | 422 | 2.21e-28 | 110 |
| Msa0850880 | AT5G15510.2 | 65.823 | 79 | 19 | 1 | 12 | 82 | 344 | 422 | 3.56e-28 | 110 |
| Msa0850880 | AT5G15510.1 | 65.823 | 79 | 19 | 1 | 12 | 82 | 344 | 422 | 4.32e-28 | 109 |
| Msa0850880 | AT1G01040.2 | 76.271 | 59 | 14 | 0 | 112 | 170 | 522 | 580 | 1.55e-24 | 100 |
| Msa0850880 | AT1G01040.1 | 76.271 | 59 | 14 | 0 | 112 | 170 | 522 | 580 | 1.58e-24 | 100 |
| Msa0850880 | AT3G01015.1 | 58.228 | 79 | 25 | 1 | 12 | 82 | 334 | 412 | 1.19e-23 | 97.4 |
Find 32 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAGCAACATGCAGTTTA+TGG | 0.180066 | 5_4:-40693349 | Msa0850880:CDS |
| CCAACTAGATGTCAAGTTTC+AGG | 0.268767 | 5_4:-40693081 | Msa0850880:CDS |
| TTTGATAGAACAACAGAAAA+AGG | 0.290816 | 5_4:-40693686 | Msa0850880:CDS |
| TAATTATGCACTTGGTGAAC+TGG | 0.358117 | 5_4:-40693252 | Msa0850880:CDS |
| CATGGAAGACCTTGTGCAAT+AGG | 0.361306 | 5_4:+40694686 | None:intergenic |
| TGAAGCAACATGCAGTTTAT+GGG | 0.373840 | 5_4:-40693348 | Msa0850880:CDS |
| CAACATGGATGTCCTCTCTA+TGG | 0.390894 | 5_4:-40694760 | None:intergenic |
| CTATGAAGCTTCACATCAAT+AGG | 0.425787 | 5_4:+40693848 | None:intergenic |
| TCGCGCGGAATTTGATCATC+AGG | 0.446879 | 5_4:-40693807 | Msa0850880:intron |
| TGCAAACCTAATTCAAAAGT+TGG | 0.456548 | 5_4:-40693282 | Msa0850880:CDS |
| GGAATTGGATATACAACAAA+AGG | 0.456981 | 5_4:-40693665 | Msa0850880:intron |
| GAAGCTTCATAGTGATTTGA+GGG | 0.498697 | 5_4:-40693837 | Msa0850880:CDS |
| TGAAGCTTCATAGTGATTTG+AGG | 0.503817 | 5_4:-40693838 | Msa0850880:CDS |
| CAGCTCTGCAAAATGATGAA+AGG | 0.521511 | 5_4:-40693112 | Msa0850880:CDS |
| AGCTCTGCAAAATGATGAAA+GGG | 0.523636 | 5_4:-40693111 | Msa0850880:CDS |
| GGGACAGTGGTGTGAATACA+AGG | 0.525908 | 5_4:-40693231 | Msa0850880:intron |
| CCTGAAACTTGACATCTAGT+TGG | 0.536129 | 5_4:+40693081 | None:intergenic |
| CATGCAGTTTATGGGAGCTA+AGG | 0.537068 | 5_4:-40693340 | Msa0850880:CDS |
| CTGACATGTCAACTCTCAAA+GGG | 0.541775 | 5_4:-40693028 | Msa0850880:CDS |
| CTATTGCACAAGGTCTTCCA+TGG | 0.553915 | 5_4:-40694685 | Msa0850880:CDS |
| CACTTGGTGAACTGGGACAG+TGG | 0.557424 | 5_4:-40693244 | Msa0850880:CDS |
| TCTGACATGTCAACTCTCAA+AGG | 0.558725 | 5_4:-40693029 | Msa0850880:CDS |
| GTAGCTGTTAATTATGCACT+TGG | 0.573217 | 5_4:-40693260 | Msa0850880:CDS |
| AATTATGCACTTGGTGAACT+GGG | 0.574377 | 5_4:-40693251 | Msa0850880:CDS |
| TCAGGTTCATCAGTAGTCCA+TGG | 0.582453 | 5_4:+40694668 | None:intergenic |
| TCAAAATCTCTAAACACGTG+TGG | 0.627683 | 5_4:+40694732 | None:intergenic |
| AAATCTCTAAACACGTGTGG+AGG | 0.630210 | 5_4:+40694735 | None:intergenic |
| GTCAAGTATACACAAAGTGA+TGG | 0.643702 | 5_4:-40693308 | Msa0850880:CDS |
| TTTGAGGGCAATTGATCGCG+CGG | 0.653049 | 5_4:-40693822 | Msa0850880:CDS |
| CGTGTGGAGGAGCCATAGAG+AGG | 0.656538 | 5_4:+40694748 | None:intergenic |
| ATGGACTACTGATGAACCTG+AGG | 0.671596 | 5_4:-40694666 | Msa0850880:intron |
| ATGAGAATACCTATTGCACA+AGG | 0.690231 | 5_4:-40694695 | Msa0850880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAATTCTTTACATTGA+CGG | - | chr5_4:40693474-40693493 | Msa0850880:intron | 15.0% |
| !! | TTAAAAATTCTTTACATTGA+CGG | - | chr5_4:40693474-40693493 | Msa0850880:intron | 15.0% |
| !! | AAAACTTTCAGTTTATTTGA+TGG | - | chr5_4:40693433-40693452 | Msa0850880:intron | 20.0% |
| !! | CAAATTTATCATAATTCTGT+TGG | - | chr5_4:40693839-40693858 | Msa0850880:CDS | 20.0% |
| !! | AAAACTTTCAGTTTATTTGA+TGG | - | chr5_4:40693433-40693452 | Msa0850880:intron | 20.0% |
| !! | CAAATTTATCATAATTCTGT+TGG | - | chr5_4:40693839-40693858 | Msa0850880:CDS | 20.0% |
| !!! | GTAATTTGTTAATCAAGCAT+AGG | - | chr5_4:40693225-40693244 | Msa0850880:intron | 25.0% |
| ! | ATGCTAGGATATTAGATATA+AGG | + | chr5_4:40693579-40693598 | None:intergenic | 25.0% |
| ! | TCATGATGTGTAAAACTAAA+GGG | + | chr5_4:40694013-40694032 | None:intergenic | 25.0% |
| ! | TTCATGATGTGTAAAACTAA+AGG | + | chr5_4:40694014-40694033 | None:intergenic | 25.0% |
| ! | TTTGATAGAACAACAGAAAA+AGG | - | chr5_4:40694082-40694101 | Msa0850880:intron | 25.0% |
| ! | CAGTTCTTTATGATCTTTAA+TGG | + | chr5_4:40694272-40694291 | None:intergenic | 25.0% |
| ! | CATTAAAGATCATAAAGAAC+TGG | - | chr5_4:40694270-40694289 | Msa0850880:intron | 25.0% |
| ! | TACTCCACTACAATTTAAAA+TGG | + | chr5_4:40694313-40694332 | None:intergenic | 25.0% |
| !!! | GTAATTTGTTAATCAAGCAT+AGG | - | chr5_4:40693225-40693244 | Msa0850880:intron | 25.0% |
| ! | ATGCTAGGATATTAGATATA+AGG | + | chr5_4:40693579-40693598 | None:intergenic | 25.0% |
| ! | TCATGATGTGTAAAACTAAA+GGG | + | chr5_4:40694013-40694032 | None:intergenic | 25.0% |
| ! | TTCATGATGTGTAAAACTAA+AGG | + | chr5_4:40694014-40694033 | None:intergenic | 25.0% |
| ! | TTTGATAGAACAACAGAAAA+AGG | - | chr5_4:40694082-40694101 | Msa0850880:intron | 25.0% |
| ! | CAGTTCTTTATGATCTTTAA+TGG | + | chr5_4:40694272-40694291 | None:intergenic | 25.0% |
| ! | CATTAAAGATCATAAAGAAC+TGG | - | chr5_4:40694270-40694289 | Msa0850880:intron | 25.0% |
| ! | TACTCCACTACAATTTAAAA+TGG | + | chr5_4:40694313-40694332 | None:intergenic | 25.0% |
| AGCATATACACTTCAAACTA+AGG | + | chr5_4:40693151-40693170 | None:intergenic | 30.0% | |
| TAACAACTCACAGTCAAATT+TGG | - | chr5_4:40693174-40693193 | Msa0850880:intron | 30.0% | |
| TCGTAATTGCATTACATGAT+GGG | + | chr5_4:40693294-40693313 | None:intergenic | 30.0% | |
| ATCGTAATTGCATTACATGA+TGG | + | chr5_4:40693295-40693314 | None:intergenic | 30.0% | |
| TTACGATTATAGCTTATGTC+TGG | - | chr5_4:40693308-40693327 | Msa0850880:CDS | 30.0% | |
| GAATTAAATCTGTGAGTAGT+TGG | - | chr5_4:40693504-40693523 | Msa0850880:intron | 30.0% | |
| TCTAATATCCTAGCATAACA+TGG | - | chr5_4:40693583-40693602 | Msa0850880:intron | 30.0% | |
| ATGGCAATTCTCAATTAGAA+CGG | - | chr5_4:40693613-40693632 | Msa0850880:intron | 30.0% | |
| ! | TGGAGTAAATTTAGTTTCAG+TGG | - | chr5_4:40693747-40693766 | Msa0850880:intron | 30.0% |
| CATGATGTGTAAAACTAAAG+GGG | + | chr5_4:40694012-40694031 | None:intergenic | 30.0% | |
| AGAACAACAGAAAAAGGAAT+TGG | - | chr5_4:40694088-40694107 | Msa0850880:intron | 30.0% | |
| GGAATTGGATATACAACAAA+AGG | - | chr5_4:40694103-40694122 | Msa0850880:intron | 30.0% | |
| TTGAGATGTGAAAGTAAACA+TGG | + | chr5_4:40694131-40694150 | None:intergenic | 30.0% | |
| AAACATGGCAACTCAAAATT+AGG | + | chr5_4:40694216-40694235 | None:intergenic | 30.0% | |
| TTGAATCAAGCTTACTTTCA+AGG | + | chr5_4:40694240-40694259 | None:intergenic | 30.0% | |
| !! | TACGCCATTTTAAATTGTAG+TGG | - | chr5_4:40694306-40694325 | Msa0850880:intron | 30.0% |
| TGCAAACCTAATTCAAAAGT+TGG | - | chr5_4:40694486-40694505 | Msa0850880:intron | 30.0% | |
| ACAAGGTACATACTATTTCA+TGG | - | chr5_4:40694554-40694573 | Msa0850880:intron | 30.0% | |
| ATACTATTTCATGGAGAATG+AGG | - | chr5_4:40694563-40694582 | Msa0850880:intron | 30.0% | |
| AGCATATACACTTCAAACTA+AGG | + | chr5_4:40693151-40693170 | None:intergenic | 30.0% | |
| TAACAACTCACAGTCAAATT+TGG | - | chr5_4:40693174-40693193 | Msa0850880:intron | 30.0% | |
| TCGTAATTGCATTACATGAT+GGG | + | chr5_4:40693294-40693313 | None:intergenic | 30.0% | |
| ATCGTAATTGCATTACATGA+TGG | + | chr5_4:40693295-40693314 | None:intergenic | 30.0% | |
| TTACGATTATAGCTTATGTC+TGG | - | chr5_4:40693308-40693327 | Msa0850880:CDS | 30.0% | |
| GAATTAAATCTGTGAGTAGT+TGG | - | chr5_4:40693504-40693523 | Msa0850880:intron | 30.0% | |
| TCTAATATCCTAGCATAACA+TGG | - | chr5_4:40693583-40693602 | Msa0850880:intron | 30.0% | |
| ATGGCAATTCTCAATTAGAA+CGG | - | chr5_4:40693613-40693632 | Msa0850880:intron | 30.0% | |
| ! | TGGAGTAAATTTAGTTTCAG+TGG | - | chr5_4:40693747-40693766 | Msa0850880:intron | 30.0% |
| CATGATGTGTAAAACTAAAG+GGG | + | chr5_4:40694012-40694031 | None:intergenic | 30.0% | |
| AGAACAACAGAAAAAGGAAT+TGG | - | chr5_4:40694088-40694107 | Msa0850880:intron | 30.0% | |
| GGAATTGGATATACAACAAA+AGG | - | chr5_4:40694103-40694122 | Msa0850880:intron | 30.0% | |
| TTGAGATGTGAAAGTAAACA+TGG | + | chr5_4:40694131-40694150 | None:intergenic | 30.0% | |
| AAACATGGCAACTCAAAATT+AGG | + | chr5_4:40694216-40694235 | None:intergenic | 30.0% | |
| TTGAATCAAGCTTACTTTCA+AGG | + | chr5_4:40694240-40694259 | None:intergenic | 30.0% | |
| !! | TACGCCATTTTAAATTGTAG+TGG | - | chr5_4:40694306-40694325 | Msa0850880:intron | 30.0% |
| TGCAAACCTAATTCAAAAGT+TGG | - | chr5_4:40694486-40694505 | Msa0850880:intron | 30.0% | |
| ACAAGGTACATACTATTTCA+TGG | - | chr5_4:40694554-40694573 | Msa0850880:intron | 30.0% | |
| ATACTATTTCATGGAGAATG+AGG | - | chr5_4:40694563-40694582 | Msa0850880:intron | 30.0% | |
| TCAAAATCTCTAAACACGTG+TGG | + | chr5_4:40693039-40693058 | None:intergenic | 35.0% | |
| ATGAGAATACCTATTGCACA+AGG | - | chr5_4:40693073-40693092 | Msa0850880:CDS | 35.0% | |
| ! | ATAAATTTTCACGCACTGTC+AGG | - | chr5_4:40693340-40693359 | Msa0850880:CDS | 35.0% |
| ! | TAAATTTTCACGCACTGTCA+GGG | - | chr5_4:40693341-40693360 | Msa0850880:CDS | 35.0% |
| TCAATTAGAACGGTACATTG+TGG | - | chr5_4:40693623-40693642 | Msa0850880:intron | 35.0% | |
| TAACGCAGCAACATCATTAA+GGG | + | chr5_4:40693680-40693699 | None:intergenic | 35.0% | |
| TTAACGCAGCAACATCATTA+AGG | + | chr5_4:40693681-40693700 | None:intergenic | 35.0% | |
| AGACTCAAGAGGATGTTTAT+TGG | + | chr5_4:40693707-40693726 | None:intergenic | 35.0% | |
| CAGAAGAATGCTTAGACAAA+TGG | + | chr5_4:40693882-40693901 | None:intergenic | 35.0% | |
| CTATGAAGCTTCACATCAAT+AGG | + | chr5_4:40693923-40693942 | None:intergenic | 35.0% | |
| TGAAGCTTCATAGTGATTTG+AGG | - | chr5_4:40693930-40693949 | Msa0850880:intron | 35.0% | |
| GAAGCTTCATAGTGATTTGA+GGG | - | chr5_4:40693931-40693950 | Msa0850880:intron | 35.0% | |
| TGATGAATGCTTAACTGTGT+AGG | - | chr5_4:40694043-40694062 | Msa0850880:intron | 35.0% | |
| GATGTGAAAGTTGGAAAACA+TGG | + | chr5_4:40694179-40694198 | None:intergenic | 35.0% | |
| ! | CTGATTTGAGATGTGAAAGT+TGG | + | chr5_4:40694188-40694207 | None:intergenic | 35.0% |
| GCTTACTTTCAAGGAAAACA+TGG | + | chr5_4:40694231-40694250 | None:intergenic | 35.0% | |
| ACATGAGCAAATAAAGCAGA+TGG | - | chr5_4:40694360-40694379 | Msa0850880:intron | 35.0% | |
| TTGAAGCAACATGCAGTTTA+TGG | - | chr5_4:40694419-40694438 | Msa0850880:intron | 35.0% | |
| TGAAGCAACATGCAGTTTAT+GGG | - | chr5_4:40694420-40694439 | Msa0850880:intron | 35.0% | |
| GTCAAGTATACACAAAGTGA+TGG | - | chr5_4:40694460-40694479 | Msa0850880:intron | 35.0% | |
| ! | CAGCTACCAACTTTTGAATT+AGG | + | chr5_4:40694495-40694514 | None:intergenic | 35.0% |
| GTAGCTGTTAATTATGCACT+TGG | - | chr5_4:40694508-40694527 | Msa0850880:intron | 35.0% | |
| ! | TAATTATGCACTTGGTGAAC+TGG | - | chr5_4:40694516-40694535 | Msa0850880:intron | 35.0% |
| ! | AATTATGCACTTGGTGAACT+GGG | - | chr5_4:40694517-40694536 | Msa0850880:intron | 35.0% |
| AGCTCTGCAAAATGATGAAA+GGG | - | chr5_4:40694657-40694676 | Msa0850880:intron | 35.0% | |
| TCAAAATCTCTAAACACGTG+TGG | + | chr5_4:40693039-40693058 | None:intergenic | 35.0% | |
| ATGAGAATACCTATTGCACA+AGG | - | chr5_4:40693073-40693092 | Msa0850880:CDS | 35.0% | |
| ! | ATAAATTTTCACGCACTGTC+AGG | - | chr5_4:40693340-40693359 | Msa0850880:CDS | 35.0% |
| ! | TAAATTTTCACGCACTGTCA+GGG | - | chr5_4:40693341-40693360 | Msa0850880:CDS | 35.0% |
| TCAATTAGAACGGTACATTG+TGG | - | chr5_4:40693623-40693642 | Msa0850880:intron | 35.0% | |
| TAACGCAGCAACATCATTAA+GGG | + | chr5_4:40693680-40693699 | None:intergenic | 35.0% | |
| TTAACGCAGCAACATCATTA+AGG | + | chr5_4:40693681-40693700 | None:intergenic | 35.0% | |
| AGACTCAAGAGGATGTTTAT+TGG | + | chr5_4:40693707-40693726 | None:intergenic | 35.0% | |
| CAGAAGAATGCTTAGACAAA+TGG | + | chr5_4:40693882-40693901 | None:intergenic | 35.0% | |
| CTATGAAGCTTCACATCAAT+AGG | + | chr5_4:40693923-40693942 | None:intergenic | 35.0% | |
| TGAAGCTTCATAGTGATTTG+AGG | - | chr5_4:40693930-40693949 | Msa0850880:intron | 35.0% | |
| GAAGCTTCATAGTGATTTGA+GGG | - | chr5_4:40693931-40693950 | Msa0850880:intron | 35.0% | |
| TGATGAATGCTTAACTGTGT+AGG | - | chr5_4:40694043-40694062 | Msa0850880:intron | 35.0% | |
| GATGTGAAAGTTGGAAAACA+TGG | + | chr5_4:40694179-40694198 | None:intergenic | 35.0% | |
| ! | CTGATTTGAGATGTGAAAGT+TGG | + | chr5_4:40694188-40694207 | None:intergenic | 35.0% |
| GCTTACTTTCAAGGAAAACA+TGG | + | chr5_4:40694231-40694250 | None:intergenic | 35.0% | |
| ACATGAGCAAATAAAGCAGA+TGG | - | chr5_4:40694360-40694379 | Msa0850880:intron | 35.0% | |
| TTGAAGCAACATGCAGTTTA+TGG | - | chr5_4:40694419-40694438 | Msa0850880:intron | 35.0% | |
| TGAAGCAACATGCAGTTTAT+GGG | - | chr5_4:40694420-40694439 | Msa0850880:intron | 35.0% | |
| GTCAAGTATACACAAAGTGA+TGG | - | chr5_4:40694460-40694479 | Msa0850880:intron | 35.0% | |
| ! | CAGCTACCAACTTTTGAATT+AGG | + | chr5_4:40694495-40694514 | None:intergenic | 35.0% |
| GTAGCTGTTAATTATGCACT+TGG | - | chr5_4:40694508-40694527 | Msa0850880:intron | 35.0% | |
| ! | TAATTATGCACTTGGTGAAC+TGG | - | chr5_4:40694516-40694535 | Msa0850880:intron | 35.0% |
| ! | AATTATGCACTTGGTGAACT+GGG | - | chr5_4:40694517-40694536 | Msa0850880:intron | 35.0% |
| AGCTCTGCAAAATGATGAAA+GGG | - | chr5_4:40694657-40694676 | Msa0850880:intron | 35.0% | |
| AAATCTCTAAACACGTGTGG+AGG | + | chr5_4:40693036-40693055 | None:intergenic | 40.0% | |
| TGAGAAATTGACCTTACCTC+AGG | + | chr5_4:40693121-40693140 | None:intergenic | 40.0% | |
| ! | GCTAATGGACAAGCATTAGT+AGG | + | chr5_4:40693261-40693280 | None:intergenic | 40.0% |
| ! | TTACATGATGGGACAATCAG+AGG | + | chr5_4:40693283-40693302 | None:intergenic | 40.0% |
| CGATTATAGCTTATGTCTGG+TGG | - | chr5_4:40693311-40693330 | Msa0850880:CDS | 40.0% | |
| ! | CATGATCAGTTGAGAAGTAC+TGG | + | chr5_4:40693381-40693400 | None:intergenic | 40.0% |
| TATCCTAGCATAACATGGCA+AGG | - | chr5_4:40693588-40693607 | Msa0850880:intron | 40.0% | |
| ACATATGGTCAAGACTCAAG+AGG | + | chr5_4:40693718-40693737 | None:intergenic | 40.0% | |
| TGACCATATGTCAGCTGATA+TGG | - | chr5_4:40693727-40693746 | Msa0850880:intron | 40.0% | |
| ACTCCATATCAGCTGACATA+TGG | + | chr5_4:40693733-40693752 | None:intergenic | 40.0% | |
| !! | ACGAGGTATTGTGAGCAATA+AGG | + | chr5_4:40693783-40693802 | None:intergenic | 40.0% |
| ! | ACAAACACAGAAAGTACACG+AGG | + | chr5_4:40693800-40693819 | None:intergenic | 40.0% |
| TGAATGCTTAACTGTGTAGG+CGG | - | chr5_4:40694046-40694065 | Msa0850880:intron | 40.0% | |
| CAGCTCTGCAAAATGATGAA+AGG | - | chr5_4:40694656-40694675 | Msa0850880:intron | 40.0% | |
| CCTGAAACTTGACATCTAGT+TGG | + | chr5_4:40694690-40694709 | None:intergenic | 40.0% | |
| CCAACTAGATGTCAAGTTTC+AGG | - | chr5_4:40694687-40694706 | Msa0850880:CDS | 40.0% | |
| TCTGACATGTCAACTCTCAA+AGG | - | chr5_4:40694739-40694758 | Msa0850880:CDS | 40.0% | |
| CTGACATGTCAACTCTCAAA+GGG | - | chr5_4:40694740-40694759 | Msa0850880:CDS | 40.0% | |
| AAATCTCTAAACACGTGTGG+AGG | + | chr5_4:40693036-40693055 | None:intergenic | 40.0% | |
| TGAGAAATTGACCTTACCTC+AGG | + | chr5_4:40693121-40693140 | None:intergenic | 40.0% | |
| ! | GCTAATGGACAAGCATTAGT+AGG | + | chr5_4:40693261-40693280 | None:intergenic | 40.0% |
| ! | TTACATGATGGGACAATCAG+AGG | + | chr5_4:40693283-40693302 | None:intergenic | 40.0% |
| CGATTATAGCTTATGTCTGG+TGG | - | chr5_4:40693311-40693330 | Msa0850880:CDS | 40.0% | |
| ! | CATGATCAGTTGAGAAGTAC+TGG | + | chr5_4:40693381-40693400 | None:intergenic | 40.0% |
| TATCCTAGCATAACATGGCA+AGG | - | chr5_4:40693588-40693607 | Msa0850880:intron | 40.0% | |
| ACATATGGTCAAGACTCAAG+AGG | + | chr5_4:40693718-40693737 | None:intergenic | 40.0% | |
| TGACCATATGTCAGCTGATA+TGG | - | chr5_4:40693727-40693746 | Msa0850880:intron | 40.0% | |
| ACTCCATATCAGCTGACATA+TGG | + | chr5_4:40693733-40693752 | None:intergenic | 40.0% | |
| !! | ACGAGGTATTGTGAGCAATA+AGG | + | chr5_4:40693783-40693802 | None:intergenic | 40.0% |
| ! | ACAAACACAGAAAGTACACG+AGG | + | chr5_4:40693800-40693819 | None:intergenic | 40.0% |
| TGAATGCTTAACTGTGTAGG+CGG | - | chr5_4:40694046-40694065 | Msa0850880:intron | 40.0% | |
| CAGCTCTGCAAAATGATGAA+AGG | - | chr5_4:40694656-40694675 | Msa0850880:intron | 40.0% | |
| CCTGAAACTTGACATCTAGT+TGG | + | chr5_4:40694690-40694709 | None:intergenic | 40.0% | |
| CCAACTAGATGTCAAGTTTC+AGG | - | chr5_4:40694687-40694706 | Msa0850880:CDS | 40.0% | |
| TCTGACATGTCAACTCTCAA+AGG | - | chr5_4:40694739-40694758 | Msa0850880:CDS | 40.0% | |
| CTGACATGTCAACTCTCAAA+GGG | - | chr5_4:40694740-40694759 | Msa0850880:CDS | 40.0% | |
| CATGGAAGACCTTGTGCAAT+AGG | + | chr5_4:40693085-40693104 | None:intergenic | 45.0% | |
| CTATTGCACAAGGTCTTCCA+TGG | - | chr5_4:40693083-40693102 | Msa0850880:CDS | 45.0% | |
| TCAGGTTCATCAGTAGTCCA+TGG | + | chr5_4:40693103-40693122 | None:intergenic | 45.0% | |
| ! | ATGGACTACTGATGAACCTG+AGG | - | chr5_4:40693102-40693121 | Msa0850880:CDS | 45.0% |
| CTACTGATGAACCTGAGGTA+AGG | - | chr5_4:40693107-40693126 | Msa0850880:CDS | 45.0% | |
| ATGGGACAATCAGAGGCTAA+TGG | + | chr5_4:40693276-40693295 | None:intergenic | 45.0% | |
| TCTCCTTGCCATGTTATGCT+AGG | + | chr5_4:40693594-40693613 | None:intergenic | 45.0% | |
| AGCATAACATGGCAAGGAGA+TGG | - | chr5_4:40693594-40693613 | Msa0850880:intron | 45.0% | |
| CATGCAGTTTATGGGAGCTA+AGG | - | chr5_4:40694428-40694447 | Msa0850880:intron | 45.0% | |
| CATGGAAGACCTTGTGCAAT+AGG | + | chr5_4:40693085-40693104 | None:intergenic | 45.0% | |
| CTATTGCACAAGGTCTTCCA+TGG | - | chr5_4:40693083-40693102 | Msa0850880:CDS | 45.0% | |
| TCAGGTTCATCAGTAGTCCA+TGG | + | chr5_4:40693103-40693122 | None:intergenic | 45.0% | |
| ! | ATGGACTACTGATGAACCTG+AGG | - | chr5_4:40693102-40693121 | Msa0850880:CDS | 45.0% |
| CTACTGATGAACCTGAGGTA+AGG | - | chr5_4:40693107-40693126 | Msa0850880:CDS | 45.0% | |
| ATGGGACAATCAGAGGCTAA+TGG | + | chr5_4:40693276-40693295 | None:intergenic | 45.0% | |
| TCTCCTTGCCATGTTATGCT+AGG | + | chr5_4:40693594-40693613 | None:intergenic | 45.0% | |
| AGCATAACATGGCAAGGAGA+TGG | - | chr5_4:40693594-40693613 | Msa0850880:intron | 45.0% | |
| CATGCAGTTTATGGGAGCTA+AGG | - | chr5_4:40694428-40694447 | Msa0850880:intron | 45.0% | |
| TTTGAGGGCAATTGATCGCG+CGG | - | chr5_4:40693946-40693965 | Msa0850880:intron | 50.0% | |
| TCGCGCGGAATTTGATCATC+AGG | - | chr5_4:40693961-40693980 | Msa0850880:intron | 50.0% | |
| GGGACAGTGGTGTGAATACA+AGG | - | chr5_4:40694537-40694556 | Msa0850880:intron | 50.0% | |
| TTTGAGGGCAATTGATCGCG+CGG | - | chr5_4:40693946-40693965 | Msa0850880:intron | 50.0% | |
| TCGCGCGGAATTTGATCATC+AGG | - | chr5_4:40693961-40693980 | Msa0850880:intron | 50.0% | |
| GGGACAGTGGTGTGAATACA+AGG | - | chr5_4:40694537-40694556 | Msa0850880:intron | 50.0% | |
| ! | CACTTGGTGAACTGGGACAG+TGG | - | chr5_4:40694524-40694543 | Msa0850880:intron | 55.0% |
| ! | CACTTGGTGAACTGGGACAG+TGG | - | chr5_4:40694524-40694543 | Msa0850880:intron | 55.0% |
| CGTGTGGAGGAGCCATAGAG+AGG | + | chr5_4:40693023-40693042 | None:intergenic | 60.0% | |
| CGTGTGGAGGAGCCATAGAG+AGG | + | chr5_4:40693023-40693042 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 40693016 | 40694774 | 40693016 | ID=Msa0850880;Name=Msa0850880 |
| chr5_4 | mRNA | 40693016 | 40694774 | 40693016 | ID=Msa0850880-mRNA-1;Parent=Msa0850880;Name=Msa0850880-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|1|0.6|1|1|1|5|0|186 |
| chr5_4 | exon | 40694667 | 40694774 | 40694667 | ID=Msa0850880-mRNA-1:exon:12866;Parent=Msa0850880-mRNA-1 |
| chr5_4 | exon | 40693808 | 40693882 | 40693808 | ID=Msa0850880-mRNA-1:exon:12865;Parent=Msa0850880-mRNA-1 |
| chr5_4 | exon | 40693666 | 40693725 | 40693666 | ID=Msa0850880-mRNA-1:exon:12864;Parent=Msa0850880-mRNA-1 |
| chr5_4 | exon | 40693232 | 40693411 | 40693232 | ID=Msa0850880-mRNA-1:exon:12863;Parent=Msa0850880-mRNA-1 |
| chr5_4 | exon | 40693016 | 40693153 | 40693016 | ID=Msa0850880-mRNA-1:exon:12862;Parent=Msa0850880-mRNA-1 |
| chr5_4 | CDS | 40694667 | 40694774 | 40694667 | ID=Msa0850880-mRNA-1:cds;Parent=Msa0850880-mRNA-1 |
| chr5_4 | CDS | 40693808 | 40693882 | 40693808 | ID=Msa0850880-mRNA-1:cds;Parent=Msa0850880-mRNA-1 |
| chr5_4 | CDS | 40693666 | 40693725 | 40693666 | ID=Msa0850880-mRNA-1:cds;Parent=Msa0850880-mRNA-1 |
| chr5_4 | CDS | 40693232 | 40693411 | 40693232 | ID=Msa0850880-mRNA-1:cds;Parent=Msa0850880-mRNA-1 |
| chr5_4 | CDS | 40693016 | 40693153 | 40693016 | ID=Msa0850880-mRNA-1:cds;Parent=Msa0850880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
