AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0017930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017930 MtrunA17_Chr1g0152131 98.131 428 6 1 1 428 1 426 0.0 857
Msa0017930 MtrunA17_Chr8g0365941 41.768 328 136 10 94 392 114 415 4.84e-56 192
Msa0017930 MtrunA17_Chr5g0421111 54.412 204 64 6 193 392 297 475 7.71e-56 193
Msa0017930 MtrunA17_Chr7g0234761 39.752 322 152 8 76 356 91 411 6.34e-51 179
Msa0017930 MtrunA17_Chr3g0144641 46.890 209 79 4 234 410 163 371 1.48e-50 176
Msa0017930 MtrunA17_Chr8g0339091 38.810 353 161 15 89 392 81 427 1.55e-48 172
Msa0017930 MtrunA17_Chr4g0035101 70.093 107 30 1 245 349 124 230 3.15e-44 157
Msa0017930 MtrunA17_Chr8g0363921 46.970 198 97 4 172 361 53 250 2.37e-42 150
Msa0017930 MtrunA17_Chr3g0131771 66.981 106 32 1 244 346 129 234 1.62e-40 147
Msa0017930 MtrunA17_Chr8g0385911 73.626 91 21 1 259 346 142 232 6.58e-40 145
Msa0017930 MtrunA17_Chr7g0258161 68.041 97 31 0 251 347 162 258 1.24e-39 145
Msa0017930 MtrunA17_Chr5g0415291 60.484 124 44 2 210 333 65 183 1.40e-38 139
Msa0017930 MtrunA17_Chr1g0174161 63.918 97 35 0 251 347 149 245 3.07e-37 138
Msa0017930 MtrunA17_Chr6g0484271 60.000 100 39 1 242 341 136 234 3.48e-32 123
Msa0017930 MtrunA17_Chr4g0074161 60.241 83 32 1 245 327 189 270 2.69e-22 98.2
Msa0017930 MtrunA17_Chr1g0190731 67.164 67 21 1 261 327 192 257 6.33e-21 93.6
Msa0017930 MtrunA17_Chr4g0014771 58.462 65 27 0 262 326 118 182 1.45e-16 77.8
Msa0017930 MtrunA17_Chr2g0329041 43.158 95 46 1 248 334 310 404 3.87e-16 80.1
Msa0017930 MtrunA17_Chr1g0174271 52.055 73 35 0 260 332 296 368 4.24e-16 79.7
Msa0017930 MtrunA17_Chr4g0032951 56.716 67 29 0 260 326 353 419 5.76e-16 79.7
Msa0017930 MtrunA17_Chr7g0258181 52.113 71 34 0 262 332 243 313 5.95e-16 78.6
Msa0017930 MtrunA17_Chr1g0193321 47.945 73 37 1 264 336 464 535 1.16e-15 79.3
Msa0017930 MtrunA17_Chr1g0184841 51.579 95 45 1 233 327 91 184 3.14e-15 75.9
Msa0017930 MtrunA17_Chr1g0182791 52.174 69 32 1 264 332 319 386 4.95e-15 77.0
Msa0017930 MtrunA17_Chr3g0095391 44.000 100 51 3 232 327 275 373 3.17e-13 71.2
Msa0017930 MtrunA17_Chr3g0087771 47.761 67 35 0 260 326 320 386 5.92e-13 70.1
Msa0017930 MtrunA17_Chr7g0262691 40.000 100 56 2 231 327 218 316 7.94e-13 70.1
Msa0017930 MtrunA17_Chr7g0270871 48.387 62 31 1 273 334 213 273 2.45e-12 68.2
Msa0017930 MtrunA17_Chr1g0152651 50.769 65 31 1 262 326 274 337 2.83e-12 67.8
Msa0017930 MtrunA17_Chr1g0153241 46.154 65 34 1 264 328 87 150 5.57e-12 65.9
Msa0017930 MtrunA17_Chr8g0351881 39.506 81 41 1 254 326 300 380 5.77e-12 67.0
Msa0017930 MtrunA17_Chr7g0271251 53.125 64 29 1 264 327 434 496 1.37e-11 66.6
Msa0017930 MtrunA17_Chr3g0134741 51.562 64 30 1 263 326 230 292 2.23e-11 64.7
Msa0017930 MtrunA17_Chr7g0231461 48.438 64 32 1 262 325 297 359 6.64e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017930 AT1G10120.2 42.793 444 160 21 1 428 1 366 3.53e-76 242
Msa0017930 AT1G10120.1 42.793 444 160 21 1 428 1 366 3.53e-76 242
Msa0017930 AT1G68920.3 63.871 155 30 3 239 393 285 413 4.84e-55 190
Msa0017930 AT1G68920.1 63.871 155 30 3 239 393 286 414 5.05e-55 190
Msa0017930 AT1G68920.4 63.871 155 30 3 239 393 286 414 5.05e-55 190
Msa0017930 AT1G68920.2 63.871 155 30 3 239 393 286 414 5.05e-55 190
Msa0017930 AT1G26260.3 69.231 130 34 2 227 351 133 261 3.20e-51 176
Msa0017930 AT1G26260.5 64.583 144 45 2 213 351 148 290 6.23e-51 176
Msa0017930 AT1G26260.4 64.583 144 45 2 213 351 170 312 7.89e-51 176
Msa0017930 AT1G26260.1 64.583 144 45 2 213 351 170 312 7.89e-51 176
Msa0017930 AT1G26260.6 64.583 144 45 2 213 351 170 312 7.89e-51 176
Msa0017930 AT1G26260.2 64.583 144 45 2 213 351 170 312 7.89e-51 176
Msa0017930 AT3G07340.2 68.595 121 37 1 231 351 228 347 3.64e-48 171
Msa0017930 AT3G07340.1 68.595 121 37 1 231 351 228 347 6.04e-48 170
Msa0017930 AT3G23690.1 54.598 174 65 5 246 409 176 345 2.90e-46 164
Msa0017930 AT4G34530.1 70.408 98 29 0 251 348 161 258 3.27e-43 154
Msa0017930 AT5G48560.2 77.419 93 20 1 258 349 297 389 6.36e-43 157
Msa0017930 AT5G48560.1 77.419 93 20 1 258 349 297 389 1.21e-42 157
Msa0017930 AT5G50915.3 54.194 155 54 4 243 397 117 254 3.27e-42 150
Msa0017930 AT5G50915.4 54.194 155 54 4 243 397 117 254 3.27e-42 150
Msa0017930 AT5G50915.1 54.194 155 54 4 243 397 117 254 5.05e-42 150
Msa0017930 AT5G50915.2 54.194 155 54 4 243 397 117 254 5.05e-42 150
Msa0017930 AT3G57800.2 37.838 259 122 5 127 347 32 289 2.36e-40 148
Msa0017930 AT1G59640.1 53.623 138 57 2 213 350 94 224 4.11e-40 144
Msa0017930 AT4G36540.2 55.474 137 55 3 211 346 94 225 4.45e-40 145
Msa0017930 AT4G36540.1 55.474 137 55 3 211 346 94 225 4.72e-40 145
Msa0017930 AT1G59640.2 53.285 137 57 2 213 349 94 223 7.00e-40 146
Msa0017930 AT2G18300.1 59.055 127 34 2 233 341 138 264 1.38e-39 145
Msa0017930 AT2G18300.2 59.055 127 34 2 233 341 138 264 1.55e-39 145
Msa0017930 AT2G18300.3 59.055 127 34 2 233 341 138 264 3.02e-39 145
Msa0017930 AT2G42300.4 62.500 96 36 0 253 348 176 271 1.56e-37 138
Msa0017930 AT2G42300.1 63.158 95 35 0 253 347 176 270 1.34e-36 137
Msa0017930 AT5G62610.2 49.686 159 67 4 187 333 67 224 1.23e-35 133
Msa0017930 AT5G62610.1 49.686 159 67 4 187 333 67 224 1.23e-35 133
Msa0017930 AT1G18400.2 70.732 82 24 0 260 341 143 224 6.40e-33 124
Msa0017930 AT1G18400.1 70.732 82 24 0 260 341 143 224 9.90e-33 124
Msa0017930 AT1G73830.2 69.136 81 25 0 261 341 146 226 8.23e-32 122
Msa0017930 AT1G73830.1 69.136 81 25 0 261 341 146 226 8.60e-32 122
Msa0017930 AT3G57800.1 32.026 306 122 6 127 347 32 336 9.57e-32 125
Msa0017930 AT1G25330.1 50.806 124 50 1 258 370 100 223 2.33e-31 120
Msa0017930 AT2G24260.2 69.697 66 19 1 262 327 35 99 3.17e-22 95.5
Msa0017930 AT5G58010.1 62.963 81 25 2 261 337 98 177 3.49e-22 96.7
Msa0017930 AT4G30980.1 71.212 66 18 1 262 327 130 194 6.46e-22 95.9
Msa0017930 AT4G30980.2 71.212 66 18 1 262 327 178 242 1.13e-21 96.3
Msa0017930 AT2G24260.1 69.697 66 19 1 262 327 138 202 1.43e-21 95.9
Msa0017930 AT2G42300.5 68.000 50 16 0 253 302 176 225 3.94e-17 80.5
Msa0017930 AT2G42300.3 68.000 50 16 0 253 302 176 225 3.94e-17 80.5
Msa0017930 AT2G42300.2 69.388 49 15 0 253 301 176 224 4.48e-17 80.5
Msa0017930 AT4G09180.1 42.056 107 49 3 242 335 153 259 1.39e-15 77.0
Msa0017930 AT1G35460.1 53.731 67 31 0 260 326 179 245 1.87e-15 76.3
Msa0017930 AT2G20180.7 41.053 95 55 1 233 327 178 271 2.07e-15 78.2
Msa0017930 AT2G20180.1 41.053 95 55 1 233 327 178 271 2.07e-15 78.2
Msa0017930 AT2G20180.5 41.053 95 55 1 233 327 178 271 2.07e-15 78.2
Msa0017930 AT2G20180.4 41.053 95 55 1 233 327 249 342 2.64e-15 78.2
Msa0017930 AT2G20180.6 41.053 95 55 1 233 327 249 342 2.64e-15 78.2
Msa0017930 AT2G20180.2 41.053 95 55 1 233 327 249 342 2.64e-15 78.2
Msa0017930 AT2G20180.3 41.053 95 55 1 233 327 249 342 2.64e-15 78.2
Msa0017930 AT2G42280.1 54.688 64 29 0 262 325 279 342 3.63e-15 77.0
Msa0017930 AT1G09530.3 53.125 64 29 1 264 327 339 401 5.45e-15 77.4
Msa0017930 AT1G09530.2 53.125 64 29 1 264 327 339 401 5.45e-15 77.4
Msa0017930 AT1G09530.5 53.125 64 29 1 264 327 339 401 5.45e-15 77.4
Msa0017930 AT1G09530.1 53.125 64 29 1 264 327 339 401 5.45e-15 77.4
Msa0017930 AT1G09530.4 53.125 64 29 1 264 327 339 401 5.45e-15 77.4
Msa0017930 AT1G09530.6 53.125 64 29 1 264 327 339 401 5.45e-15 77.4
Msa0017930 AT2G42280.3 56.061 66 27 1 262 325 279 344 6.34e-15 76.3
Msa0017930 AT1G51140.1 56.250 64 28 0 262 325 304 367 7.68e-15 76.3
Msa0017930 AT4G28790.1 35.156 128 64 3 212 334 229 342 3.46e-14 74.3
Msa0017930 AT2G20180.8 37.838 111 55 3 214 324 243 339 4.50e-14 73.6
Msa0017930 AT4G02590.3 64.179 67 23 1 261 327 82 147 6.99e-14 71.6
Msa0017930 AT4G02590.2 64.179 67 23 1 261 327 145 210 9.10e-14 72.4
Msa0017930 AT4G02590.1 64.179 67 23 1 261 327 145 210 9.10e-14 72.4
Msa0017930 AT4G28815.2 55.172 58 25 1 265 322 71 127 1.08e-13 70.9
Msa0017930 AT4G28800.1 35.338 133 68 6 265 390 252 373 1.16e-13 72.8
Msa0017930 AT1G03040.2 65.152 66 22 1 262 327 139 203 1.48e-13 71.2
Msa0017930 AT1G03040.1 65.152 66 22 1 262 327 144 208 1.67e-13 71.2
Msa0017930 AT1G03040.3 64.179 67 23 1 261 327 143 208 2.71e-13 71.2
Msa0017930 AT4G28815.1 55.172 58 25 1 265 322 147 203 3.81e-13 70.5
Msa0017930 AT4G28790.2 35.897 117 56 3 212 323 229 331 1.04e-12 69.3
Msa0017930 AT4G28800.2 52.542 59 27 1 265 323 264 321 3.41e-12 68.6
Msa0017930 AT4G00050.2 49.231 65 32 1 262 326 105 168 8.09e-12 66.2
Msa0017930 AT2G46970.1 41.250 80 41 2 260 334 216 294 1.24e-11 66.6
Msa0017930 AT2G46970.3 41.250 80 41 2 260 334 194 272 1.39e-11 66.2
Msa0017930 AT2G46970.2 41.250 80 41 2 260 334 185 263 1.41e-11 66.2
Msa0017930 AT4G00050.1 49.231 65 32 1 262 326 207 270 1.49e-11 66.2
Msa0017930 AT4G00050.3 49.231 65 32 1 262 326 207 270 1.68e-11 65.9
Msa0017930 AT4G33880.1 49.231 65 32 1 262 326 266 329 1.77e-11 65.9
Msa0017930 AT2G43140.2 48.485 66 34 0 260 325 229 294 2.01e-11 65.1
Msa0017930 AT2G43140.1 48.485 66 34 0 260 325 132 197 4.32e-11 62.8

Find 160 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATACTACCTTTGTTGTTTA+TGG 0.090730 1_1:-29960470 Msa0017930:five_prime_UTR
CAATACAGCACTTGACAATT+TGG 0.175917 1_1:-29957078 Msa0017930:CDS
TACTACCCAATTGGTGAAAT+TGG 0.178979 1_1:-29960446 Msa0017930:five_prime_UTR
TTTCCTGATTGTTCAACTTT+TGG 0.201081 1_1:+29958539 None:intergenic
ATCTTATAACCCTCTTGTTT+TGG 0.236824 1_1:-29959372 Msa0017930:CDS
GTACTTGTATTTGATTCTTT+TGG 0.244214 1_1:-29960338 Msa0017930:five_prime_UTR
TTGAGTCAAGCTCATACTTT+TGG 0.246530 1_1:-29959440 Msa0017930:CDS
ATCCCATTCCATAAAAGTTT+TGG 0.257326 1_1:+29957108 None:intergenic
AAGATCTTCACTTACATCTT+TGG 0.264618 1_1:+29957666 None:intergenic
TTCTTCTCTTATTAGATAAC+TGG 0.273700 1_1:-29958086 Msa0017930:intron
TCAGAAATGGTTGGTTCCTT+TGG 0.277793 1_1:-29959254 Msa0017930:CDS
GCAGCAGCAGCATCATTTCA+TGG 0.280443 1_1:-29959495 Msa0017930:CDS
GCTTAGAAACAAACCTTGTT+TGG 0.285521 1_1:+29959011 None:intergenic
TATTAGTTCTGTGTCAAATA+TGG 0.309763 1_1:-29959555 Msa0017930:CDS
ATCCAAAGGGGTCAAATTAA+TGG 0.316200 1_1:-29959143 Msa0017930:CDS
TTTAATTAATACCTAACTAT+TGG 0.316951 1_1:-29956528 Msa0017930:three_prime_UTR
TTGCTTCAAGAACTTGTTCC+AGG 0.318899 1_1:-29958272 Msa0017930:CDS
CAAGTTTCCTCAGTCATTGC+AGG 0.330648 1_1:-29960368 Msa0017930:five_prime_UTR
GAAATTATGTATAGAGTTGC+AGG 0.336424 1_1:-29956312 Msa0017930:three_prime_UTR
TTGTGTTCAAAATTTGTGTT+TGG 0.337717 1_1:-29956279 Msa0017930:three_prime_UTR
CAAATTGTCAAGTGCTGTAT+TGG 0.339868 1_1:+29957079 None:intergenic
AAATGCATATAAATGATTAA+AGG 0.347202 1_1:+29959767 None:intergenic
CACCATTAATTTGACCCCTT+TGG 0.347434 1_1:+29959141 None:intergenic
CAAAATTTGTGTTTGGGGTT+AGG 0.347483 1_1:-29956272 Msa0017930:three_prime_UTR
ATTCCCAAACGCAAGTTTCC+AGG 0.357553 1_1:-29957292 Msa0017930:CDS
AGAGACATAGACATAGAAAA+AGG 0.359398 1_1:-29959684 Msa0017930:five_prime_UTR
CTCCAGTCACGCTTAGGACT+TGG 0.365208 1_1:-29957354 Msa0017930:CDS
CTTGAGCCAATTGCTGAGTC+AGG 0.372677 1_1:-29959744 Msa0017930:five_prime_UTR
AATTCGAAGCGCCAATAGTT+AGG 0.373908 1_1:+29956517 None:intergenic
TGCAAGACTGTGGCTGTTTG+TGG 0.374048 1_1:+29958439 None:intergenic
AATGCATATAAATGATTAAA+GGG 0.377617 1_1:+29959768 None:intergenic
TCCTTTGGCCAACATGGGTC+AGG 0.379373 1_1:-29959239 Msa0017930:CDS
AGTTAAATTGTGCAGTCAAC+AGG 0.381342 1_1:+29956610 None:intergenic
TGGGCTCTAAACCTTTGAAT+TGG 0.383247 1_1:-29956085 Msa0017930:three_prime_UTR
ATTTCATGGCTTCTTCAGCT+TGG 0.391101 1_1:-29959481 Msa0017930:CDS
TTCTTGTCCATCTTCAGAAA+TGG 0.392622 1_1:-29959579 Msa0017930:CDS
TTTCATGGCTTCTTCAGCTT+GGG 0.397346 1_1:-29959480 Msa0017930:CDS
TGTGTTCAAAATTTGTGTTT+GGG 0.398180 1_1:-29956278 Msa0017930:three_prime_UTR
TACCCTGGAAACTTGCGTTT+GGG 0.399150 1_1:+29957289 None:intergenic
GGAATCGGTGGATTTGTTCC+TGG 0.401252 1_1:-29957333 Msa0017930:CDS
AAGTGGAAGTTTCTCAGAAA+TGG 0.401403 1_1:-29959267 Msa0017930:CDS
AATACAGCACTTGACAATTT+GGG 0.404050 1_1:-29957077 Msa0017930:CDS
CTGCAATGACTGAGGAAACT+TGG 0.404304 1_1:+29960369 None:intergenic
TCTACATCAAAGTTCAGTTC+CGG 0.405761 1_1:+29957700 None:intergenic
CTACATCAAAGTTCAGTTCC+GGG 0.407748 1_1:+29957701 None:intergenic
TATGTACATGCAGAATGCTT+TGG 0.415983 1_1:-29957141 Msa0017930:intron
CTTGTTCAATACTCAAACCT+TGG 0.420686 1_1:-29959320 Msa0017930:CDS
TATCAATAGTTATAAGAAGA+AGG 0.423090 1_1:+29960255 None:intergenic
TTGTTAGATTCAATATCAAT+TGG 0.426359 1_1:-29956477 Msa0017930:three_prime_UTR
AAATTGTCAAGTGCTGTATT+GGG 0.430882 1_1:+29957080 None:intergenic
TTACCCTGGAAACTTGCGTT+TGG 0.431578 1_1:+29957288 None:intergenic
TTTGGCCAACATGGGTCAGG+TGG 0.434581 1_1:-29959236 Msa0017930:CDS
TGGCTCAAGAGATATCTTGC+AGG 0.441362 1_1:+29959812 None:intergenic
AAGGGTATTTATTGATATGA+AGG 0.443214 1_1:-29956393 Msa0017930:three_prime_UTR
GACTGTGGACAAAGGAGAAA+AGG 0.443873 1_1:-29960165 Msa0017930:five_prime_UTR
AACAATCCTGACTCAGCAAT+TGG 0.444131 1_1:+29959738 None:intergenic
TTCCAAGTCCTAAGCGTGAC+TGG 0.444135 1_1:+29957352 None:intergenic
ATGTATAGAGTTGCAGGACT+TGG 0.446164 1_1:-29956306 Msa0017930:three_prime_UTR
ATCGCTACCTTGTTGCATCC+TGG 0.450261 1_1:+29958254 None:intergenic
GTTGGTTCCTTTGGCCAACA+TGG 0.452089 1_1:-29959245 Msa0017930:CDS
CAGCCACAGTCTTGCAGAAA+GGG 0.452630 1_1:-29958432 Msa0017930:intron
GAACATGTAGCTAACACATC+AGG 0.456379 1_1:-29959212 Msa0017930:CDS
ACAGGATCTGCACCTGGTAG+TGG 0.456742 1_1:-29959077 Msa0017930:CDS
CTAATATCCATTTCTGAAGA+TGG 0.462754 1_1:+29959572 None:intergenic
AAACCAAAAGTTGAACAATC+AGG 0.463056 1_1:-29958542 Msa0017930:CDS
ATCCACAAGATTCCTTCCTA+TGG 0.466206 1_1:-29959290 Msa0017930:CDS
GTTTCTACAACAGAAGACTT+TGG 0.470200 1_1:-29956639 Msa0017930:three_prime_UTR
TGTGCAATCACTGCAGCAAC+AGG 0.471611 1_1:-29958030 Msa0017930:CDS
TATTCAACACACTATAACTC+TGG 0.473092 1_1:+29956671 None:intergenic
AAAGTTCAGTTCCGGGTTCA+CGG 0.473106 1_1:+29957708 None:intergenic
TAGATTCTCCAGTCACGCTT+AGG 0.473536 1_1:-29957360 Msa0017930:CDS
TTCTTTCTTGAATTAAGAGA+TGG 0.473587 1_1:-29959654 Msa0017930:exon
ATTCACGAGGATGGAGGTAC+AGG 0.478235 1_1:-29959095 Msa0017930:CDS
TGGAAACTTGCGTTTGGGAA+TGG 0.479393 1_1:+29957294 None:intergenic
GTTTATGGTTACTACCCAAT+TGG 0.482901 1_1:-29960455 Msa0017930:five_prime_UTR
TTATAATGCTGTGACGGAAT+TGG 0.483604 1_1:+29959185 None:intergenic
CGCTTAGGACTTGGAATCGG+TGG 0.488486 1_1:-29957345 Msa0017930:CDS
ACAGTTCCCTCCTTTGCCTC+AGG 0.492804 1_1:-29957238 Msa0017930:intron
ATCACTGCAGCAACAGGTTG+AGG 0.493756 1_1:-29958024 Msa0017930:intron
CGCAAGTTTCCAGGGTAACA+TGG 0.498356 1_1:-29957283 Msa0017930:CDS
TATAATCACATCAAGGATGC+TGG 0.503047 1_1:-29959167 Msa0017930:CDS
AAAAGATTAGCGAGCGAATG+AGG 0.508531 1_1:-29958295 Msa0017930:CDS
GAAACTTGCCACCGTGAACC+CGG 0.509079 1_1:-29957719 Msa0017930:CDS
CAAGGATGCTGGAATCCAAA+GGG 0.509335 1_1:-29959156 Msa0017930:CDS
AAGATTCCTTCCTATGGAAG+TGG 0.511892 1_1:-29959284 Msa0017930:CDS
TGAGAAACTTCCACTTCCAT+AGG 0.519524 1_1:+29959274 None:intergenic
TTTCTTCTACTTCCACTACC+AGG 0.520640 1_1:+29959065 None:intergenic
ATTTATTGATATGAAGGGCA+TGG 0.524106 1_1:-29956387 Msa0017930:three_prime_UTR
ACAGCCACAGTCTTGCAGAA+AGG 0.526933 1_1:-29958433 Msa0017930:CDS
AACTTGGAAGTGAAAGGGAC+AGG 0.526946 1_1:+29960385 None:intergenic
GGATGAGAGGAGCTTATACC+AGG 0.529199 1_1:+29957315 None:intergenic
GTTCAATACTCAAACCTTGG+AGG 0.531231 1_1:-29959317 Msa0017930:CDS
ATCATTAAGAACAAGTTGCA+AGG 0.531774 1_1:-29956412 Msa0017930:three_prime_UTR
GGAAGTTTCTCAGAAATGGT+TGG 0.538496 1_1:-29959263 Msa0017930:CDS
TTGGTTCCTTTGGCCAACAT+GGG 0.538891 1_1:-29959244 Msa0017930:CDS
GATTAGAATGCTGAGGGTGA+TGG 0.542326 1_1:-29958617 Msa0017930:intron
TCTTTAGAAGCATCTCCACT+TGG 0.543899 1_1:+29958497 None:intergenic
ATGCTCTTAACAAGACTGAA+AGG 0.547541 1_1:-29960048 Msa0017930:five_prime_UTR
AGTTTCCAGGGTAACATGGC+TGG 0.548496 1_1:-29957279 Msa0017930:CDS
TGAGGAAACTTGGAAGTGAA+AGG 0.550184 1_1:+29960379 None:intergenic
TCTTGTGGATCATGCCTCCA+AGG 0.550691 1_1:+29959303 None:intergenic
TCTTTCTTGAATTAAGAGAT+GGG 0.551193 1_1:-29959653 Msa0017930:exon
TTGGCCAACATGGGTCAGGT+GGG 0.552278 1_1:-29959235 Msa0017930:CDS
ACTGTTGAAAGTGAAAGTGT+TGG 0.558922 1_1:+29960295 None:intergenic
CGTCTGAGTGAACTATCGAT+TGG 0.560939 1_1:-29956048 None:intergenic
TTCTTCTTTCAGTCCAAACA+AGG 0.563605 1_1:-29959024 Msa0017930:intron
AGGGTATTTATTGATATGAA+GGG 0.566466 1_1:-29956392 Msa0017930:three_prime_UTR
ACCTGACCCATGTTGGCCAA+AGG 0.569057 1_1:+29959238 None:intergenic
TTCCCAAACGCAAGTTTCCA+GGG 0.570083 1_1:-29957291 Msa0017930:CDS
TCTCCGAGGAAGATTTCTGA+TGG 0.571010 1_1:-29958584 Msa0017930:CDS
TTTCTTGCTTGTATCAGAGA+GGG 0.571979 1_1:-29960017 Msa0017930:five_prime_UTR
GAGGAAACTTGGAAGTGAAA+GGG 0.572419 1_1:+29960380 None:intergenic
GTGTTCAAAATTTGTGTTTG+GGG 0.576966 1_1:-29956277 Msa0017930:three_prime_UTR
TGGTGAACAATCTCAGATTG+AGG 0.578059 1_1:-29959123 Msa0017930:CDS
GGGAACTGTGTTGATGAACT+AGG 0.579147 1_1:+29957252 None:intergenic
TCACGCTTAGGACTTGGAAT+CGG 0.580584 1_1:-29957348 Msa0017930:CDS
GCATGCCAGCCATGTTACCC+TGG 0.580745 1_1:+29957274 None:intergenic
ACTGTGGACAAAGGAGAAAA+GGG 0.582202 1_1:-29960164 Msa0017930:five_prime_UTR
TAAACAAGGAACAAATAACT+TGG 0.582620 1_1:+29959837 None:intergenic
TCTATACATAATTTCACAGA+AGG 0.586134 1_1:+29956320 None:intergenic
TCAAGGATGCTGGAATCCAA+AGG 0.589904 1_1:-29959157 Msa0017930:CDS
CCTTGATTCTCCAAAACAAG+AGG 0.592951 1_1:+29959362 None:intergenic
AAACTTCCACTTCCATAGGA+AGG 0.598638 1_1:+29959278 None:intergenic
GAACCATCAGAAATCTTCCT+CGG 0.600200 1_1:+29958581 None:intergenic
GCTTGACTCAATGAAACAAG+TGG 0.600555 1_1:+29959452 None:intergenic
TTCCATAGGAAGGAATCTTG+TGG 0.606199 1_1:+29959288 None:intergenic
GGGTGGTGAGGAAAATGCAA+TGG 0.606665 1_1:-29959633 Msa0017930:CDS
CTTGACAATTTGGGACCCAA+TGG 0.608459 1_1:-29957068 Msa0017930:intron
TGGCCAACATGGGTCAGGTG+GGG 0.608930 1_1:-29959234 Msa0017930:CDS
GAGGACTCTATTCACGAGGA+TGG 0.609630 1_1:-29959104 Msa0017930:CDS
TGCGTTTGGGAATGGATGAG+AGG 0.610999 1_1:+29957302 None:intergenic
CTTGATTCTCCAAAACAAGA+GGG 0.612056 1_1:+29959363 None:intergenic
AGTCTTCTGTTGTAGAAACA+AGG 0.612748 1_1:+29956643 None:intergenic
ACAGCATTATAATCACATCA+AGG 0.612775 1_1:-29959174 Msa0017930:CDS
TCATTAAGAACAAGTTGCAA+GGG 0.618041 1_1:-29956411 Msa0017930:three_prime_UTR
GAGGTTGGATTAGAATGCTG+AGG 0.619937 1_1:-29958624 Msa0017930:intron
AACTGAACTTTGATGTAGAG+CGG 0.623663 1_1:-29957696 Msa0017930:CDS
GTTCCCCACCTGACCCATGT+TGG 0.625912 1_1:+29959231 None:intergenic
TAAGTTTGTTGTGTGGACTG+TGG 0.626396 1_1:-29960180 Msa0017930:five_prime_UTR
GAATTAAGAGATGGGTGGTG+AGG 0.626693 1_1:-29959645 Msa0017930:exon
ATATCTTGCAGGACTAAACA+AGG 0.628784 1_1:+29959823 None:intergenic
AACATGTAGCTAACACATCA+GGG 0.630115 1_1:-29959211 Msa0017930:CDS
GGAGGTACAGGATCTGCACC+TGG 0.632655 1_1:-29959083 Msa0017930:CDS
GCTAAAGACAACTCTCCAAG+TGG 0.635670 1_1:-29958512 Msa0017930:CDS
GTACCCTTTCTGCAAGACTG+TGG 0.636291 1_1:+29958429 None:intergenic
TCAAAATCCTGCAATGACTG+AGG 0.636610 1_1:+29960361 None:intergenic
AATGCAATGGAGTTTCAACA+TGG 0.644756 1_1:-29959620 Msa0017930:CDS
GACTCTATTCACGAGGATGG+AGG 0.650722 1_1:-29959101 Msa0017930:CDS
AGGTTGGATTAGAATGCTGA+GGG 0.650823 1_1:-29958623 Msa0017930:intron
GAAGGGCATGGAATTACATG+AGG 0.652992 1_1:-29956375 Msa0017930:three_prime_UTR
ATTCATGTGAGAGCTAGAAG+AGG 0.658128 1_1:-29958467 Msa0017930:CDS
TTCTTGAATTAAGAGATGGG+TGG 0.661303 1_1:-29959650 Msa0017930:exon
ATGTGATTATAATGCTGTGA+CGG 0.663370 1_1:+29959179 None:intergenic
GTTGTGTGGACTGTGGACAA+AGG 0.667680 1_1:-29960173 Msa0017930:five_prime_UTR
GTAGTAACCATAAACAACAA+AGG 0.668529 1_1:+29960463 None:intergenic
ACTTGTTCCAGGATGCAACA+AGG 0.687844 1_1:-29958261 Msa0017930:intron
GATTGAGGACTCTATTCACG+AGG 0.712793 1_1:-29959108 Msa0017930:CDS
AAGGATGCTGGAATCCAAAG+GGG 0.724973 1_1:-29959155 Msa0017930:CDS
ATGGAGTGAAAGATTCTCCG+AGG 0.725092 1_1:-29958598 Msa0017930:CDS
GTTCAGTTCCGGGTTCACGG+TGG 0.752023 1_1:+29957711 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGCATATAAATGATTAAA+GGG + chr1_1:29956858-29956877 None:intergenic 15.0%
!! AAATGCATATAAATGATTAA+AGG + chr1_1:29956859-29956878 None:intergenic 15.0%
!! TTTAATTAATACCTAACTAT+TGG - chr1_1:29960095-29960114 Msa0017930:five_prime_UTR 15.0%
!! TATCAATAGTTATAAGAAGA+AGG + chr1_1:29956371-29956390 None:intergenic 20.0%
!!! TATTCTATTTTATGAGAACA+AGG - chr1_1:29956708-29956727 Msa0017930:intron 20.0%
!!! ATTCTATTTTATGAGAACAA+GGG - chr1_1:29956709-29956728 Msa0017930:intron 20.0%
!!! TTAGTTGTTAATTTGTTAGA+GGG - chr1_1:29957695-29957714 Msa0017930:CDS 20.0%
!! ATATAAGACATTTCATTCAT+TGG + chr1_1:29957837-29957856 None:intergenic 20.0%
!! TATATCAATGAATCTCATAT+AGG - chr1_1:29957907-29957926 Msa0017930:intron 20.0%
!!! ATTTAATTGTCTTGTTTATG+AGG - chr1_1:29957939-29957958 Msa0017930:intron 20.0%
!!! ATTTGGACATATTTAAGATT+TGG + chr1_1:29959093-29959112 None:intergenic 20.0%
!! AATCATAATTGTGTATTAAC+TGG + chr1_1:29959220-29959239 None:intergenic 20.0%
!! ACTAACAAAAAATACATTCA+AGG - chr1_1:29959748-29959767 Msa0017930:five_prime_UTR 20.0%
!! AACAATGAAAAAAGAGTAAA+TGG + chr1_1:29959874-29959893 None:intergenic 20.0%
!! ACTGAAGTTAAAAAAAATAG+AGG - chr1_1:29960033-29960052 Msa0017930:five_prime_UTR 20.0%
!! CTGAAGTTAAAAAAAATAGA+GGG - chr1_1:29960034-29960053 Msa0017930:five_prime_UTR 20.0%
!!! AAAGGTTTTATTAGTTGTAT+AGG - chr1_1:29960071-29960090 Msa0017930:five_prime_UTR 20.0%
!! TTGTTAGATTCAATATCAAT+TGG - chr1_1:29960146-29960165 Msa0017930:five_prime_UTR 20.0%
!!! TGATAATTTTACCAATTCAA+AGG + chr1_1:29960552-29960571 None:intergenic 20.0%
!!! TATACTACCTTTGTTGTTTA+TGG - chr1_1:29956153-29956172 Msa0017930:three_prime_UTR 25.0%
! AAAAACCAATTTCACCAATT+GGG + chr1_1:29956185-29956204 None:intergenic 25.0%
! TAAAAACCAATTTCACCAAT+TGG + chr1_1:29956186-29956205 None:intergenic 25.0%
!! GTACTTGTATTTGATTCTTT+TGG - chr1_1:29956285-29956304 Msa0017930:three_prime_UTR 25.0%
!!! AGATTTTTAAGTTTGTTGTG+TGG - chr1_1:29956436-29956455 Msa0017930:three_prime_UTR 25.0%
!!! TTAGATTTTGATTTGATCCT+AGG - chr1_1:29956646-29956665 Msa0017930:three_prime_UTR 25.0%
!!! TAGATTTTGATTTGATCCTA+GGG - chr1_1:29956647-29956666 Msa0017930:three_prime_UTR 25.0%
! TAAACAAGGAACAAATAACT+TGG + chr1_1:29956789-29956808 None:intergenic 25.0%
!!! AAGTGAATTTTGACTAAGTT+TGG + chr1_1:29956834-29956853 None:intergenic 25.0%
! TTCTTTCTTGAATTAAGAGA+TGG - chr1_1:29956969-29956988 Msa0017930:intron 25.0%
! TCTTTCTTGAATTAAGAGAT+GGG - chr1_1:29956970-29956989 Msa0017930:intron 25.0%
!!! TATTAGTTCTGTGTCAAATA+TGG - chr1_1:29957068-29957087 Msa0017930:intron 25.0%
! TATATCAATGAATCTTATGC+AGG - chr1_1:29957650-29957669 Msa0017930:intron 25.0%
!!! GTTAGTTGTTAATTTGTTAG+AGG - chr1_1:29957694-29957713 Msa0017930:CDS 25.0%
! AAATGTCTTATATATGAGCT+TGG - chr1_1:29957844-29957863 Msa0017930:intron 25.0%
! AAAGAAATGCCTTATATATG+AGG - chr1_1:29957980-29957999 Msa0017930:intron 25.0%
!! AACAGCTTTATAGTATAAGA+TGG + chr1_1:29958236-29958255 None:intergenic 25.0%
! GTTAAGATGATTGTGTTAAA+TGG - chr1_1:29958395-29958414 Msa0017930:intron 25.0%
! GTCGTAACTTATAACTTATT+TGG - chr1_1:29958431-29958450 Msa0017930:intron 25.0%
! TTCTTCTCTTATTAGATAAC+TGG - chr1_1:29958537-29958556 Msa0017930:CDS 25.0%
!! TTGATACTTTAAAGATTGCA+AGG + chr1_1:29958638-29958657 None:intergenic 25.0%
!! GCTTCAATTCCATTATATTT+TGG - chr1_1:29958831-29958850 Msa0017930:intron 25.0%
!! TTCCAAAACTTTTATGGAAT+GGG - chr1_1:29959513-29959532 Msa0017930:CDS 25.0%
!! ATCTTTTGCTAGTTATTAAG+CGG - chr1_1:29959694-29959713 Msa0017930:five_prime_UTR 25.0%
!! ATTTTTATCCTTGAATGTGT+CGG + chr1_1:29959849-29959868 None:intergenic 25.0%
! AATTTATTTCCATGTTGAAC+AGG - chr1_1:29959919-29959938 Msa0017930:five_prime_UTR 25.0%
! ATTTATTTCCATGTTGAACA+GGG - chr1_1:29959920-29959939 Msa0017930:five_prime_UTR 25.0%
! AAAAAAATAGAGGGAGAAAA+AGG - chr1_1:29960043-29960062 Msa0017930:five_prime_UTR 25.0%
!!! AAGGGTATTTATTGATATGA+AGG - chr1_1:29960230-29960249 Msa0017930:five_prime_UTR 25.0%
!! AGGGTATTTATTGATATGAA+GGG - chr1_1:29960231-29960250 Msa0017930:five_prime_UTR 25.0%
! TCTATACATAATTTCACAGA+AGG + chr1_1:29960306-29960325 None:intergenic 25.0%
! TTGTGTTCAAAATTTGTGTT+TGG - chr1_1:29960344-29960363 Msa0017930:five_prime_UTR 25.0%
! TGTGTTCAAAATTTGTGTTT+GGG - chr1_1:29960345-29960364 Msa0017930:five_prime_UTR 25.0%
!!! TGATGTGTGCATTTTTTTTA+AGG - chr1_1:29960374-29960393 Msa0017930:five_prime_UTR 25.0%
!!! GATGTGTGCATTTTTTTTAA+GGG - chr1_1:29960375-29960394 Msa0017930:five_prime_UTR 25.0%
GTAGTAACCATAAACAACAA+AGG + chr1_1:29956163-29956182 None:intergenic 30.0%
!! TTTTGGTCTTTGTTTCTTCT+TGG - chr1_1:29956302-29956321 Msa0017930:three_prime_UTR 30.0%
AGAGACATAGACATAGAAAA+AGG - chr1_1:29956939-29956958 Msa0017930:intron 30.0%
! CTAATATCCATTTCTGAAGA+TGG + chr1_1:29957054-29957073 None:intergenic 30.0%
!! ATCTTATAACCCTCTTGTTT+TGG - chr1_1:29957251-29957270 Msa0017930:CDS 30.0%
ATGTGATTATAATGCTGTGA+CGG + chr1_1:29957447-29957466 None:intergenic 30.0%
ACAGCATTATAATCACATCA+AGG - chr1_1:29957449-29957468 Msa0017930:intron 30.0%
!! GTTTGTTTCTAAGCTAAGTT+TGG - chr1_1:29957621-29957640 Msa0017930:intron 30.0%
TTGTATAGGACTTGTATTGT+TGG - chr1_1:29957781-29957800 Msa0017930:intron 30.0%
!!! GTTGGTTTGTTTTGTTTATG+AGG - chr1_1:29957799-29957818 Msa0017930:intron 30.0%
! TTGGATTAGATCAAACTTTG+TGG - chr1_1:29957863-29957882 Msa0017930:intron 30.0%
AAATGCCTTATATATGAGGT+TGG - chr1_1:29957984-29958003 Msa0017930:intron 30.0%
CTAATCCAACCTCATATATA+AGG + chr1_1:29957992-29958011 None:intergenic 30.0%
AAACCAAAAGTTGAACAATC+AGG - chr1_1:29958081-29958100 Msa0017930:intron 30.0%
! TTTCCTGATTGTTCAACTTT+TGG + chr1_1:29958087-29958106 None:intergenic 30.0%
! TTTATAGTATAAGATGGTGG+TGG + chr1_1:29958230-29958249 None:intergenic 30.0%
! AGCTTTATAGTATAAGATGG+TGG + chr1_1:29958233-29958252 None:intergenic 30.0%
!!! TTCCTTTTTTTGATTTCCCT+TGG + chr1_1:29958721-29958740 None:intergenic 30.0%
CCAGGAAAACCAAAATATAA+TGG + chr1_1:29958843-29958862 None:intergenic 30.0%
!!! CCATTATATTTTGGTTTTCC+TGG - chr1_1:29958840-29958859 Msa0017930:intron 30.0%
TCTTTATACGATAAATAGCC+AGG + chr1_1:29958861-29958880 None:intergenic 30.0%
AAGATCTTCACTTACATCTT+TGG + chr1_1:29958960-29958979 None:intergenic 30.0%
ATATGTCCAAATATCAGTCA+TGG - chr1_1:29959101-29959120 Msa0017930:CDS 30.0%
! ATCTTTACTCTTTTTACCTG+AGG + chr1_1:29959404-29959423 None:intergenic 30.0%
!!! CATAAAAGTTTTGGAAGTCA+TGG + chr1_1:29959509-29959528 None:intergenic 30.0%
! CATGACTTCCAAAACTTTTA+TGG - chr1_1:29959507-29959526 Msa0017930:CDS 30.0%
! CTTCCAAAACTTTTATGGAA+TGG - chr1_1:29959512-29959531 Msa0017930:CDS 30.0%
! ATCCCATTCCATAAAAGTTT+TGG + chr1_1:29959518-29959537 None:intergenic 30.0%
! AAATTGTCAAGTGCTGTATT+GGG + chr1_1:29959546-29959565 None:intergenic 30.0%
AATACAGCACTTGACAATTT+GGG - chr1_1:29959546-29959565 Msa0017930:CDS 30.0%
AGACAATGTTACTACAGTAT+CGG - chr1_1:29959638-29959657 Msa0017930:CDS 30.0%
ACTAGCAAAAGATACACTTA+AGG + chr1_1:29959687-29959706 None:intergenic 30.0%
TATTCAACACACTATAACTC+TGG + chr1_1:29959955-29959974 None:intergenic 30.0%
AGGGAGAAAAAGGAAAATAA+AGG - chr1_1:29960053-29960072 Msa0017930:five_prime_UTR 30.0%
ATCATTAAGAACAAGTTGCA+AGG - chr1_1:29960211-29960230 Msa0017930:five_prime_UTR 30.0%
TCATTAAGAACAAGTTGCAA+GGG - chr1_1:29960212-29960231 Msa0017930:five_prime_UTR 30.0%
ATTTATTGATATGAAGGGCA+TGG - chr1_1:29960236-29960255 Msa0017930:five_prime_UTR 30.0%
GAAATTATGTATAGAGTTGC+AGG - chr1_1:29960311-29960330 Msa0017930:five_prime_UTR 30.0%
GTGTTCAAAATTTGTGTTTG+GGG - chr1_1:29960346-29960365 Msa0017930:five_prime_UTR 30.0%
!!! GCATTTTTTTTAAGGGTTTC+TGG - chr1_1:29960382-29960401 Msa0017930:five_prime_UTR 30.0%
!!! AAGTGCTGCTTAGAATTTTT+GGG - chr1_1:29960519-29960538 Msa0017930:five_prime_UTR 30.0%
GTTTATGGTTACTACCCAAT+TGG - chr1_1:29956168-29956187 Msa0017930:three_prime_UTR 35.0%
TACTACCCAATTGGTGAAAT+TGG - chr1_1:29956177-29956196 Msa0017930:three_prime_UTR 35.0%
! ACTGTTGAAAGTGAAAGTGT+TGG + chr1_1:29956331-29956350 None:intergenic 35.0%
ATGCTCTTAACAAGACTGAA+AGG - chr1_1:29956575-29956594 Msa0017930:three_prime_UTR 35.0%
! TTTTCTTGCTTGTATCAGAG+AGG - chr1_1:29956605-29956624 Msa0017930:three_prime_UTR 35.0%
TTTCTTGCTTGTATCAGAGA+GGG - chr1_1:29956606-29956625 Msa0017930:three_prime_UTR 35.0%
! TTTGATCCTAGGGTTTTTGA+AGG - chr1_1:29956657-29956676 Msa0017930:three_prime_UTR 35.0%
ATATCTTGCAGGACTAAACA+AGG + chr1_1:29956803-29956822 None:intergenic 35.0%
TTCTTGAATTAAGAGATGGG+TGG - chr1_1:29956973-29956992 Msa0017930:intron 35.0%
AATGCAATGGAGTTTCAACA+TGG - chr1_1:29957003-29957022 Msa0017930:intron 35.0%
TTCTTGTCCATCTTCAGAAA+TGG - chr1_1:29957044-29957063 Msa0017930:intron 35.0%
! TTGAGTCAAGCTCATACTTT+TGG - chr1_1:29957183-29957202 Msa0017930:intron 35.0%
!! TACTTTTGGAGGTTCTTCAA+TGG - chr1_1:29957197-29957216 Msa0017930:intron 35.0%
CTTGATTCTCCAAAACAAGA+GGG + chr1_1:29957263-29957282 None:intergenic 35.0%
!!! CTCTTGTTTTGGAGAATCAA+GGG - chr1_1:29957262-29957281 Msa0017930:CDS 35.0%
CTTGTTCAATACTCAAACCT+TGG - chr1_1:29957303-29957322 Msa0017930:CDS 35.0%
AAGTGGAAGTTTCTCAGAAA+TGG - chr1_1:29957356-29957375 Msa0017930:CDS 35.0%
AACATGTAGCTAACACATCA+GGG - chr1_1:29957412-29957431 Msa0017930:intron 35.0%
! TTATAATGCTGTGACGGAAT+TGG + chr1_1:29957441-29957460 None:intergenic 35.0%
TATAATCACATCAAGGATGC+TGG - chr1_1:29957456-29957475 Msa0017930:intron 35.0%
ATCCAAAGGGGTCAAATTAA+TGG - chr1_1:29957480-29957499 Msa0017930:intron 35.0%
AGTGGAAGTAGAAGAAAAAG+AGG - chr1_1:29957564-29957583 Msa0017930:intron 35.0%
TTCTTCTTTCAGTCCAAACA+AGG - chr1_1:29957599-29957618 Msa0017930:intron 35.0%
GCTTAGAAACAAACCTTGTT+TGG + chr1_1:29957615-29957634 None:intergenic 35.0%
CCTGATTTATCGAACTTCAT+CGG - chr1_1:29957754-29957773 Msa0017930:intron 35.0%
!!! ACTTCTGTTTTTGCTTTTGC+AGG - chr1_1:29958296-29958315 Msa0017930:CDS 35.0%
CACCAAGGGAAATCAAAAAA+AGG - chr1_1:29958716-29958735 Msa0017930:intron 35.0%
TCTACATCAAAGTTCAGTTC+CGG + chr1_1:29958926-29958945 None:intergenic 35.0%
AACTGAACTTTGATGTAGAG+CGG - chr1_1:29958927-29958946 Msa0017930:intron 35.0%
AAGTGAATAGTTCACTTCCA+AGG + chr1_1:29959001-29959020 None:intergenic 35.0%
TGGAAGTGAACTATTCACTT+TGG - chr1_1:29959001-29959020 Msa0017930:intron 35.0%
AAGTGAACTATTCACTTTGG+AGG - chr1_1:29959004-29959023 Msa0017930:intron 35.0%
AGTGAACTATTCACTTTGGA+GGG - chr1_1:29959005-29959024 Msa0017930:intron 35.0%
TAAGCATATCGTTACATCGA+TGG + chr1_1:29959068-29959087 None:intergenic 35.0%
ATGAGACCATGACTGATATT+TGG + chr1_1:29959110-29959129 None:intergenic 35.0%
AAATATCAGTCATGGTCTCA+TGG - chr1_1:29959109-29959128 Msa0017930:CDS 35.0%
TATGTACATGCAGAATGCTT+TGG - chr1_1:29959482-29959501 Msa0017930:CDS 35.0%
! CAAATTGTCAAGTGCTGTAT+TGG + chr1_1:29959547-29959566 None:intergenic 35.0%
CAATACAGCACTTGACAATT+TGG - chr1_1:29959545-29959564 Msa0017930:CDS 35.0%
GATTCTGCCTATTTACCATT+GGG + chr1_1:29959573-29959592 None:intergenic 35.0%
AGATTCTGCCTATTTACCAT+TGG + chr1_1:29959574-29959593 None:intergenic 35.0%
AGTTATTAAGCGGCTAATAG+AGG - chr1_1:29959704-29959723 Msa0017930:five_prime_UTR 35.0%
CAAATGTGTCTCTCATTAGT+CGG + chr1_1:29959780-29959799 None:intergenic 35.0%
ACTAATGAGAGACACATTTG+AGG - chr1_1:29959780-29959799 Msa0017930:five_prime_UTR 35.0%
AGTCTTCTGTTGTAGAAACA+AGG + chr1_1:29959983-29960002 None:intergenic 35.0%
GTTTCTACAACAGAAGACTT+TGG - chr1_1:29959984-29960003 Msa0017930:five_prime_UTR 35.0%
AGTTAAATTGTGCAGTCAAC+AGG + chr1_1:29960016-29960035 None:intergenic 35.0%
! CAAAATTTGTGTTTGGGGTT+AGG - chr1_1:29960351-29960370 Msa0017930:five_prime_UTR 35.0%
!!! CAAGTGCTGCTTAGAATTTT+TGG - chr1_1:29960518-29960537 Msa0017930:five_prime_UTR 35.0%
GAGGAAACTTGGAAGTGAAA+GGG + chr1_1:29956246-29956265 None:intergenic 40.0%
TGAGGAAACTTGGAAGTGAA+AGG + chr1_1:29956247-29956266 None:intergenic 40.0%
TCAAAATCCTGCAATGACTG+AGG + chr1_1:29956265-29956284 None:intergenic 40.0%
!! TAAGTTTGTTGTGTGGACTG+TGG - chr1_1:29956443-29956462 Msa0017930:three_prime_UTR 40.0%
ACTGTGGACAAAGGAGAAAA+GGG - chr1_1:29956459-29956478 Msa0017930:three_prime_UTR 40.0%
AACAATCCTGACTCAGCAAT+TGG + chr1_1:29956888-29956907 None:intergenic 40.0%
ATTTCATGGCTTCTTCAGCT+TGG - chr1_1:29957142-29957161 Msa0017930:intron 40.0%
TTTCATGGCTTCTTCAGCTT+GGG - chr1_1:29957143-29957162 Msa0017930:intron 40.0%
GCTTGACTCAATGAAACAAG+TGG + chr1_1:29957174-29957193 None:intergenic 40.0%
! AGTCAAGCTCATACTTTTGG+AGG - chr1_1:29957186-29957205 Msa0017930:intron 40.0%
CCTTGATTCTCCAAAACAAG+AGG + chr1_1:29957264-29957283 None:intergenic 40.0%
!!! CCTCTTGTTTTGGAGAATCA+AGG - chr1_1:29957261-29957280 Msa0017930:CDS 40.0%
GTTCAATACTCAAACCTTGG+AGG - chr1_1:29957306-29957325 Msa0017930:CDS 40.0%
ATCCACAAGATTCCTTCCTA+TGG - chr1_1:29957333-29957352 Msa0017930:CDS 40.0%
TTCCATAGGAAGGAATCTTG+TGG + chr1_1:29957338-29957357 None:intergenic 40.0%
AAGATTCCTTCCTATGGAAG+TGG - chr1_1:29957339-29957358 Msa0017930:CDS 40.0%
AAACTTCCACTTCCATAGGA+AGG + chr1_1:29957348-29957367 None:intergenic 40.0%
TGAGAAACTTCCACTTCCAT+AGG + chr1_1:29957352-29957371 None:intergenic 40.0%
GGAAGTTTCTCAGAAATGGT+TGG - chr1_1:29957360-29957379 Msa0017930:CDS 40.0%
! TCAGAAATGGTTGGTTCCTT+TGG - chr1_1:29957369-29957388 Msa0017930:intron 40.0%
GAACATGTAGCTAACACATC+AGG - chr1_1:29957411-29957430 Msa0017930:intron 40.0%
! CACCATTAATTTGACCCCTT+TGG + chr1_1:29957485-29957504 None:intergenic 40.0%
TGGTGAACAATCTCAGATTG+AGG - chr1_1:29957500-29957519 Msa0017930:intron 40.0%
TTTCTTCTACTTCCACTACC+AGG + chr1_1:29957561-29957580 None:intergenic 40.0%
CCGATGAAGTTCGATAAATC+AGG + chr1_1:29957757-29957776 None:intergenic 40.0%
! ACTTCATCGGTGTCTTGTAT+AGG - chr1_1:29957767-29957786 Msa0017930:intron 40.0%
! AGGTTGGATTAGAATGCTGA+GGG - chr1_1:29958000-29958019 Msa0017930:intron 40.0%
GAACCATCAGAAATCTTCCT+CGG + chr1_1:29958045-29958064 None:intergenic 40.0%
!! TCTTTAGAAGCATCTCCACT+TGG + chr1_1:29958129-29958148 None:intergenic 40.0%
ATTCATGTGAGAGCTAGAAG+AGG - chr1_1:29958156-29958175 Msa0017930:intron 40.0%
AAAAGATTAGCGAGCGAATG+AGG - chr1_1:29958328-29958347 Msa0017930:intron 40.0%
! TTGCTTCAAGAACTTGTTCC+AGG - chr1_1:29958351-29958370 Msa0017930:intron 40.0%
CTACATCAAAGTTCAGTTCC+GGG + chr1_1:29958925-29958944 None:intergenic 40.0%
ATCATACAGATTCGACTCCT+TGG - chr1_1:29958981-29959000 Msa0017930:intron 40.0%
! TTTTTACCTGAGGCAAAGGA+GGG + chr1_1:29959394-29959413 None:intergenic 40.0%
! ACTCTTTTTACCTGAGGCAA+AGG + chr1_1:29959398-29959417 None:intergenic 40.0%
! TTTGGGACCCAATGGTAAAT+AGG - chr1_1:29959563-29959582 Msa0017930:CDS 40.0%
TTTATCCTTGAATGTGTCGG+TGG + chr1_1:29959846-29959865 None:intergenic 40.0%
TATTTCCATGTTGAACAGGG+AGG - chr1_1:29959923-29959942 Msa0017930:five_prime_UTR 40.0%
! AATTCGAAGCGCCAATAGTT+AGG + chr1_1:29960109-29960128 None:intergenic 40.0%
ATGTATAGAGTTGCAGGACT+TGG - chr1_1:29960317-29960336 Msa0017930:five_prime_UTR 40.0%
!! TGGGCTCTAAACCTTTGAAT+TGG - chr1_1:29960538-29960557 Msa0017930:five_prime_UTR 40.0%
AACTTGGAAGTGAAAGGGAC+AGG + chr1_1:29956241-29956260 None:intergenic 45.0%
CTGCAATGACTGAGGAAACT+TGG + chr1_1:29956257-29956276 None:intergenic 45.0%
CAAGTTTCCTCAGTCATTGC+AGG - chr1_1:29956255-29956274 Msa0017930:three_prime_UTR 45.0%
GACTGTGGACAAAGGAGAAA+AGG - chr1_1:29956458-29956477 Msa0017930:three_prime_UTR 45.0%
CCTTCACCTTCAAAAACCCT+AGG + chr1_1:29956666-29956685 None:intergenic 45.0%
!! CCTAGGGTTTTTGAAGGTGA+AGG - chr1_1:29956663-29956682 Msa0017930:exon 45.0%
!! AGGGTTTTTGAAGGTGAAGG+TGG - chr1_1:29956666-29956685 Msa0017930:exon 45.0%
TGGCTCAAGAGATATCTTGC+AGG + chr1_1:29956814-29956833 None:intergenic 45.0%
GAATTAAGAGATGGGTGGTG+AGG - chr1_1:29956978-29956997 Msa0017930:intron 45.0%
TTGGTTCCTTTGGCCAACAT+GGG - chr1_1:29957379-29957398 Msa0017930:intron 45.0%
TCAAGGATGCTGGAATCCAA+AGG - chr1_1:29957466-29957485 Msa0017930:intron 45.0%
CAAGGATGCTGGAATCCAAA+GGG - chr1_1:29957467-29957486 Msa0017930:intron 45.0%
AAGGATGCTGGAATCCAAAG+GGG - chr1_1:29957468-29957487 Msa0017930:intron 45.0%
GATTGAGGACTCTATTCACG+AGG - chr1_1:29957515-29957534 Msa0017930:intron 45.0%
! GAGGTTGGATTAGAATGCTG+AGG - chr1_1:29957999-29958018 Msa0017930:intron 45.0%
GATTAGAATGCTGAGGGTGA+TGG - chr1_1:29958006-29958025 Msa0017930:intron 45.0%
ATGGAGTGAAAGATTCTCCG+AGG - chr1_1:29958025-29958044 Msa0017930:CDS 45.0%
TCTCCGAGGAAGATTTCTGA+TGG - chr1_1:29958039-29958058 Msa0017930:CDS 45.0%
GCTAAAGACAACTCTCCAAG+TGG - chr1_1:29958111-29958130 Msa0017930:intron 45.0%
ACTTGTTCCAGGATGCAACA+AGG - chr1_1:29958362-29958381 Msa0017930:intron 45.0%
GATGCAACAAGGTAGCGATT+TGG - chr1_1:29958373-29958392 Msa0017930:intron 45.0%
TGTGCACATGCTTAACACCA+AGG - chr1_1:29958701-29958720 Msa0017930:intron 45.0%
GTGCACATGCTTAACACCAA+GGG - chr1_1:29958702-29958721 Msa0017930:intron 45.0%
AAAGTTCAGTTCCGGGTTCA+CGG + chr1_1:29958918-29958937 None:intergenic 45.0%
TAGATTCTCCAGTCACGCTT+AGG - chr1_1:29959263-29959282 Msa0017930:CDS 45.0%
TCACGCTTAGGACTTGGAAT+CGG - chr1_1:29959275-29959294 Msa0017930:CDS 45.0%
TGGAAACTTGCGTTTGGGAA+TGG + chr1_1:29959332-29959351 None:intergenic 45.0%
ATTCCCAAACGCAAGTTTCC+AGG - chr1_1:29959331-29959350 Msa0017930:CDS 45.0%
TTCCCAAACGCAAGTTTCCA+GGG - chr1_1:29959332-29959351 Msa0017930:CDS 45.0%
TACCCTGGAAACTTGCGTTT+GGG + chr1_1:29959337-29959356 None:intergenic 45.0%
TTACCCTGGAAACTTGCGTT+TGG + chr1_1:29959338-29959357 None:intergenic 45.0%
! GGGAACTGTGTTGATGAACT+AGG + chr1_1:29959374-29959393 None:intergenic 45.0%
! CTTTTTACCTGAGGCAAAGG+AGG + chr1_1:29959395-29959414 None:intergenic 45.0%
! CTTGACAATTTGGGACCCAA+TGG - chr1_1:29959555-29959574 Msa0017930:CDS 45.0%
TTCAACCTCCCTGTTCAACA+TGG + chr1_1:29959931-29959950 None:intergenic 45.0%
! GAAGGGCATGGAATTACATG+AGG - chr1_1:29960248-29960267 Msa0017930:five_prime_UTR 45.0%
! GTTGTGTGGACTGTGGACAA+AGG - chr1_1:29956450-29956469 Msa0017930:three_prime_UTR 50.0%
CTTGAGCCAATTGCTGAGTC+AGG - chr1_1:29956879-29956898 Msa0017930:intron 50.0%
GGGTGGTGAGGAAAATGCAA+TGG - chr1_1:29956990-29957009 Msa0017930:intron 50.0%
GCAGCAGCAGCATCATTTCA+TGG - chr1_1:29957128-29957147 Msa0017930:CDS 50.0%
TCTTGTGGATCATGCCTCCA+AGG + chr1_1:29957323-29957342 None:intergenic 50.0%
! GTTGGTTCCTTTGGCCAACA+TGG - chr1_1:29957378-29957397 Msa0017930:intron 50.0%
GAGGACTCTATTCACGAGGA+TGG - chr1_1:29957519-29957538 Msa0017930:intron 50.0%
GACTCTATTCACGAGGATGG+AGG - chr1_1:29957522-29957541 Msa0017930:intron 50.0%
! ATTCACGAGGATGGAGGTAC+AGG - chr1_1:29957528-29957547 Msa0017930:intron 50.0%
TGCAAGACTGTGGCTGTTTG+TGG + chr1_1:29958187-29958206 None:intergenic 50.0%
ACAGCCACAGTCTTGCAGAA+AGG - chr1_1:29958190-29958209 Msa0017930:intron 50.0%
CAGCCACAGTCTTGCAGAAA+GGG - chr1_1:29958191-29958210 Msa0017930:intron 50.0%
GTACCCTTTCTGCAAGACTG+TGG + chr1_1:29958197-29958216 None:intergenic 50.0%
ATCGCTACCTTGTTGCATCC+TGG + chr1_1:29958372-29958391 None:intergenic 50.0%
TGTGCAATCACTGCAGCAAC+AGG - chr1_1:29958593-29958612 Msa0017930:CDS 50.0%
ATCACTGCAGCAACAGGTTG+AGG - chr1_1:29958599-29958618 Msa0017930:CDS 50.0%
TTCCAAGTCCTAAGCGTGAC+TGG + chr1_1:29959274-29959293 None:intergenic 50.0%
! GGAATCGGTGGATTTGTTCC+TGG - chr1_1:29959290-29959309 Msa0017930:CDS 50.0%
GGATGAGAGGAGCTTATACC+AGG + chr1_1:29959311-29959330 None:intergenic 50.0%
TGCGTTTGGGAATGGATGAG+AGG + chr1_1:29959324-29959343 None:intergenic 50.0%
CGCAAGTTTCCAGGGTAACA+TGG - chr1_1:29959340-29959359 Msa0017930:CDS 50.0%
AGTTTCCAGGGTAACATGGC+TGG - chr1_1:29959344-29959363 Msa0017930:CDS 50.0%
CGATACCACCGACACATTCA+AGG - chr1_1:29959838-29959857 Msa0017930:five_prime_UTR 50.0%
TCCTTTGGCCAACATGGGTC+AGG - chr1_1:29957384-29957403 Msa0017930:intron 55.0%
ACCTGACCCATGTTGGCCAA+AGG + chr1_1:29957388-29957407 None:intergenic 55.0%
TTTGGCCAACATGGGTCAGG+TGG - chr1_1:29957387-29957406 Msa0017930:intron 55.0%
TTGGCCAACATGGGTCAGGT+GGG - chr1_1:29957388-29957407 Msa0017930:intron 55.0%
ACAGGATCTGCACCTGGTAG+TGG - chr1_1:29957546-29957565 Msa0017930:intron 55.0%
GAAACTTGCCACCGTGAACC+CGG - chr1_1:29958904-29958923 Msa0017930:intron 55.0%
CTCCAGTCACGCTTAGGACT+TGG - chr1_1:29959269-29959288 Msa0017930:CDS 55.0%
CGCTTAGGACTTGGAATCGG+TGG - chr1_1:29959278-29959297 Msa0017930:CDS 55.0%
ACAGTTCCCTCCTTTGCCTC+AGG - chr1_1:29959385-29959404 Msa0017930:CDS 55.0%
TGGCCAACATGGGTCAGGTG+GGG - chr1_1:29957389-29957408 Msa0017930:intron 60.0%
GTTCCCCACCTGACCCATGT+TGG + chr1_1:29957395-29957414 None:intergenic 60.0%
! GGAGGTACAGGATCTGCACC+TGG - chr1_1:29957540-29957559 Msa0017930:intron 60.0%
GTTCAGTTCCGGGTTCACGG+TGG + chr1_1:29958915-29958934 None:intergenic 60.0%
GCATGCCAGCCATGTTACCC+TGG + chr1_1:29959352-29959371 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 29956049 29960596 29956049 ID=Msa0017930;Name=Msa0017930
chr1_1 mRNA 29956049 29960596 29956049 ID=Msa0017930-mRNA-1;Parent=Msa0017930;Name=Msa0017930-mRNA-1;_AED=0.03;_eAED=0.03;_QI=939|1|1|1|1|1|8|633|428
chr1_1 exon 29956049 29956704 29956049 ID=Msa0017930-mRNA-1:exon:9978;Parent=Msa0017930-mRNA-1
chr1_1 exon 29957069 29957150 29957069 ID=Msa0017930-mRNA-1:exon:9977;Parent=Msa0017930-mRNA-1
chr1_1 exon 29957239 29957379 29957239 ID=Msa0017930-mRNA-1:exon:9976;Parent=Msa0017930-mRNA-1
chr1_1 exon 29957681 29957752 29957681 ID=Msa0017930-mRNA-1:exon:9975;Parent=Msa0017930-mRNA-1
chr1_1 exon 29958025 29958093 29958025 ID=Msa0017930-mRNA-1:exon:9974;Parent=Msa0017930-mRNA-1
chr1_1 exon 29958262 29958327 29958262 ID=Msa0017930-mRNA-1:exon:9973;Parent=Msa0017930-mRNA-1
chr1_1 exon 29958433 29958633 29958433 ID=Msa0017930-mRNA-1:exon:9972;Parent=Msa0017930-mRNA-1
chr1_1 exon 29959025 29960596 29959025 ID=Msa0017930-mRNA-1:exon:9971;Parent=Msa0017930-mRNA-1
chr1_1 five_prime_UTR 29959658 29960596 29959658 ID=Msa0017930-mRNA-1:five_prime_utr;Parent=Msa0017930-mRNA-1
chr1_1 CDS 29959025 29959657 29959025 ID=Msa0017930-mRNA-1:cds;Parent=Msa0017930-mRNA-1
chr1_1 CDS 29958433 29958633 29958433 ID=Msa0017930-mRNA-1:cds;Parent=Msa0017930-mRNA-1
chr1_1 CDS 29958262 29958327 29958262 ID=Msa0017930-mRNA-1:cds;Parent=Msa0017930-mRNA-1
chr1_1 CDS 29958025 29958093 29958025 ID=Msa0017930-mRNA-1:cds;Parent=Msa0017930-mRNA-1
chr1_1 CDS 29957681 29957752 29957681 ID=Msa0017930-mRNA-1:cds;Parent=Msa0017930-mRNA-1
chr1_1 CDS 29957239 29957379 29957239 ID=Msa0017930-mRNA-1:cds;Parent=Msa0017930-mRNA-1
chr1_1 CDS 29957069 29957150 29957069 ID=Msa0017930-mRNA-1:cds;Parent=Msa0017930-mRNA-1
chr1_1 CDS 29956682 29956704 29956682 ID=Msa0017930-mRNA-1:cds;Parent=Msa0017930-mRNA-1
chr1_1 three_prime_UTR 29956049 29956681 29956049 ID=Msa0017930-mRNA-1:three_prime_utr;Parent=Msa0017930-mRNA-1
Gene Sequence

>Msa0017930

ATGGGTGGTGAGGAAAATGCAATGGAGTTTCAACATGGAAATGAGAATATTATGAGTTCTTGTCCATCTTCAGAAATGGATATTAGTTCTGTGTCAAATATGGCTAAGACTTCTTCAGATGTAGTTAATCATCATCAGCAGCAGCAGCAGCATCATTTCATGGCTTCTTCAGCTTGGGATAATCCACTTGTTTCATTGAGTCAAGCTCATACTTTTGGAGGTTCTTCAATGGTTTCTCATAATGAGTTTGCTAATGCAAATTCATCTTATAACCCTCTTGTTTTGGAGAATCAAGGGATGAGTAGCACTTCTCATCTTGTTCAATACTCAAACCTTGGAGGCATGATCCACAAGATTCCTTCCTATGGAAGTGGAAGTTTCTCAGAAATGGTTGGTTCCTTTGGCCAACATGGGTCAGGTGGGGAACATGTAGCTAACACATCAGGGTATCCAATTCCGTCACAGCATTATAATCACATCAAGGATGCTGGAATCCAAAGGGGTCAAATTAATGGTGAACAATCTCAGATTGAGGACTCTATTCACGAGGATGGAGGTACAGGATCTGCACCTGGTAGTGGAAGTAGAAGAAAAAGAGGACTTGATCAAAATTCTTCTTTCAGTCCAAACAAGAATGCTGAGGGTGATGGAGTGAAAGATTCTCCGAGGAAGATTTCTGATGGTTCAATAGAACATGATAAGAAACCAAAAGTTGAACAATCAGGAAAGCAAGCTAAAGACAACTCTCCAAGTGGAGATGCTTCTAAAGATAATTTCATTCATGTGAGAGCTAGAAGAGGTCAAGCCACAAACAGCCACAGTCTTGCAGAAAGGGTCAGAAGAGAAAAGATTAGCGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGCAAAGCAGTAATGCTAGATGAGATAATAAACTATGTGCAATCACTGCAGCAACAGGTTGAGTTTTTGTCAATGAAACTTGCCACCGTGAACCCGGAACTGAACTTTGATGTAGAGCGGCTCTTATCCAAAGATATTCTCCAGTCACGCTTAGGACTTGGAATCGGTGGATTTGTTCCTGGTATAAGCTCCTCTCATCCATTCCCAAACGCAAGTTTCCAGGGTAACATGGCTGGCATGCCTAGTTCATCAACACAGTTCCCTCCTTTGCCTCAGAATGCTTTGGACCATGACTTCCAAAACTTTTATGGAATGGGATATGATCCCAATACAGCACTTGACAATTTGGGACCCAATGGGAGGTTGAAACCAGAGTTATAG
Protein sequence

>Msa0017930

MGGEENAMEFQHGNENIMSSCPSSEMDISSVSNMAKTSSDVVNHHQQQQQHHFMASSAWDNPLVSLSQAHTFGGSSMVSHNEFANANSSYNPLVLENQGMSSTSHLVQYSNLGGMIHKIPSYGSGSFSEMVGSFGQHGSGGEHVANTSGYPIPSQHYNHIKDAGIQRGQINGEQSQIEDSIHEDGGTGSAPGSGSRRKRGLDQNSSFSPNKNAEGDGVKDSPRKISDGSIEHDKKPKVEQSGKQAKDNSPSGDASKDNFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERLLSKDILQSRLGLGIGGFVPGISSSHPFPNASFQGNMAGMPSSSTQFPPLPQNALDHDFQNFYGMGYDPNTALDNLGPNGRLKPEL*