Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0874320 | XP_039685598.1 | 71.564 | 211 | 14 | 1 | 17 | 227 | 3 | 167 | 5.68e-88 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0874320 | A0A072UDQ9 | 64.607 | 178 | 15 | 2 | 48 | 225 | 20 | 149 | 1.87e-64 | 208 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0697060 | Msa0874320 | 0.804905 | 1.725872e-49 | -8.615850e-47 |
| Msa0766630 | Msa0874320 | 0.824320 | 8.603520e-54 | -8.615850e-47 |
| Msa0188460 | Msa0874320 | 0.806911 | 6.534232e-50 | -8.615850e-47 |
| Msa0208090 | Msa0874320 | 0.803035 | 4.223662e-49 | -8.615850e-47 |
| Msa0384890 | Msa0874320 | 0.806271 | 8.921434e-50 | -8.615850e-47 |
| Msa0397750 | Msa0874320 | 0.806360 | 8.542266e-50 | -8.615850e-47 |
| Msa0435230 | Msa0874320 | 0.822064 | 2.892332e-53 | -8.615850e-47 |
| Msa0479340 | Msa0874320 | 0.822596 | 2.177278e-53 | -8.615850e-47 |
| Msa0309020 | Msa0874320 | 0.801567 | 8.473216e-49 | -8.615850e-47 |
| Msa0874320 | Msa0907260 | 0.803366 | 3.608588e-49 | -8.615850e-47 |
| Msa0874320 | Msa1014540 | 0.801031 | 1.090653e-48 | -8.615850e-47 |
| Msa0874320 | Msa1114030 | 0.807888 | 4.056357e-50 | -8.615850e-47 |
| Msa0874320 | Msa1284680 | 0.800228 | 1.590070e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0874320 | MtrunA17_Chr6g0467141 | 64.286 | 168 | 14 | 1 | 60 | 227 | 1 | 122 | 9.05e-65 | 197 |
| Msa0874320 | MtrunA17_Chr2g0305311 | 52.535 | 217 | 54 | 3 | 13 | 229 | 295 | 462 | 1.20e-60 | 198 |
| Msa0874320 | MtrunA17_Chr3g0086061 | 76.190 | 42 | 8 | 1 | 186 | 227 | 1 | 40 | 2.78e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGCTATGGGTTTGAATTT+TGG | 0.161043 | 6_1:-10147137 | Msa0874320:CDS |
| GAATATGTGTGCCATAATTT+TGG | 0.249041 | 6_1:-10146699 | Msa0874320:CDS |
| TGCTGGATATGTTCGTTCTA+TGG | 0.264362 | 6_1:-10146937 | Msa0874320:CDS |
| GGGGTTGTTCAGAGGGGTAT+TGG | 0.267070 | 6_1:-10147161 | Msa0874320:intron |
| GAAGCATTTGTCAATGTGTT+TGG | 0.324021 | 6_1:-10146969 | Msa0874320:CDS |
| GCTGGATATGTTCGTTCTAT+GGG | 0.386979 | 6_1:-10146936 | Msa0874320:CDS |
| GAGGGGTATTGGCTTAGCTA+TGG | 0.393056 | 6_1:-10147150 | Msa0874320:CDS |
| AATGTAGGGAACCAAAATTA+TGG | 0.402176 | 6_1:+10146688 | Msa0874310:intron |
| TACTTGTAGGAATTGAGATA+TGG | 0.409851 | 6_1:-10147636 | Msa0874320:intron |
| TATGTTCGTTCTATGGGGCT+TGG | 0.433914 | 6_1:-10146930 | Msa0874320:CDS |
| ACTATGGCAATCTTTAATGT+AGG | 0.447623 | 6_1:+10146673 | Msa0874310:intron |
| AGGGGTATTGGCTTAGCTAT+GGG | 0.448329 | 6_1:-10147149 | Msa0874320:CDS |
| TTCAGAAGTTGATGTCTTGA+AGG | 0.473713 | 6_1:-10146793 | Msa0874320:CDS |
| GAGTCAGTTCCTAGTGTATG+AGG | 0.494286 | 6_1:+10147872 | Msa0874310:intron |
| ATTATGGCACACATATTCAA+TGG | 0.494835 | 6_1:+10146704 | Msa0874310:intron |
| ACTCTGTTCTTCTCCTCAAT+CGG | 0.502803 | 6_1:-10150637 | Msa0874320:CDS |
| ATGCAAGTTGAAATATATGC+AGG | 0.522125 | 6_1:-10147033 | Msa0874320:CDS |
| ATTTGTCAATGTGTTTGGAA+AGG | 0.532999 | 6_1:-10146964 | Msa0874320:CDS |
| CTATGGCAATCTTTAATGTA+GGG | 0.535282 | 6_1:+10146674 | Msa0874310:intron |
| CTCCTTGAGAGAATCAATCT+CGG | 0.548026 | 6_1:+10146821 | Msa0874310:intron |
| GCAAAATTCTAGAGACAAAG+AGG | 0.550469 | 6_1:-10146739 | Msa0874320:CDS |
| GATTGATTCTCTCAAGGAGA+AGG | 0.550604 | 6_1:-10146817 | Msa0874320:CDS |
| GATATGGTCGAGAATATAGC+AGG | 0.553453 | 6_1:-10147620 | Msa0874320:CDS |
| AACTTGCATTTCAACAACAC+AGG | 0.564886 | 6_1:+10147047 | Msa0874310:intron |
| TGCGATCAGAAAAGATGAGT+TGG | 0.567830 | 6_1:-10147846 | Msa0874320:intron |
| GTGTTTGGAAAGGAATATGC+TGG | 0.579104 | 6_1:-10146954 | Msa0874320:CDS |
| AATTTGTCAATGAATATGCA+AGG | 0.581916 | 6_1:-10147557 | Msa0874320:CDS |
| GAGTGATTAGAGATTCGAGA+TGG | 0.586792 | 6_1:+10146900 | Msa0874310:intron |
| CTGTTCTTCTCCTCAATCGG+TGG | 0.604681 | 6_1:-10150634 | Msa0874320:intron |
| CTGGATATGTTCGTTCTATG+GGG | 0.607774 | 6_1:-10146935 | Msa0874320:CDS |
| AGCCGAGATTGATTCTCTCA+AGG | 0.610716 | 6_1:-10146823 | Msa0874320:CDS |
| ATTAGCCTCGATGGAAGATG+AGG | 0.618582 | 6_1:+10146866 | Msa0874310:intron |
| ATATGGTCGAGAATATAGCA+GGG | 0.620430 | 6_1:-10147619 | Msa0874320:CDS |
| ACTAGATTTCAAAGTCGTAG+TGG | 0.623497 | 6_1:-10147107 | Msa0874320:CDS |
| ATTTGTCAATGAATATGCAA+GGG | 0.624585 | 6_1:-10147556 | Msa0874320:CDS |
| TGTTTCGCATAAAGATGCCA+AGG | 0.628468 | 6_1:-10147583 | Msa0874320:CDS |
| TATGGTCGAGAATATAGCAG+GGG | 0.665151 | 6_1:-10147618 | Msa0874320:CDS |
| GTTTCGCATAAAGATGCCAA+GGG | 0.672067 | 6_1:-10147582 | Msa0874320:CDS |
| ATGGCACACATATTCAATGG+AGG | 0.687427 | 6_1:+10146707 | Msa0874310:intron |
| ATTAGCCTCATCTTCCATCG+AGG | 0.739856 | 6_1:-10146871 | Msa0874320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAAACCAATTTAAT+TGG | - | chr6_1:10146985-10147004 | Msa0874320:CDS | 10.0% |
| !!! | ATTGCTTTAAATATAAAATA+TGG | + | chr6_1:10148491-10148510 | Msa0874310:intron | 10.0% |
| !!! | ATATTTTATATTTAAAGCAA+TGG | - | chr6_1:10148490-10148509 | Msa0874320:intron | 10.0% |
| !!! | TTCAGATAGTTTATTATTTT+AGG | - | chr6_1:10147157-10147176 | Msa0874320:intron | 15.0% |
| !!! | TATCGTTTTCAAATATAAAT+TGG | + | chr6_1:10147300-10147319 | Msa0874310:intron | 15.0% |
| !! | TATTCTAAATTTGTAACTAA+GGG | - | chr6_1:10147413-10147432 | Msa0874320:intron | 15.0% |
| !! | TGTTTAAGAAATATTACAAA+TGG | - | chr6_1:10149251-10149270 | Msa0874320:intron | 15.0% |
| !! | GTTTAAGAAATATTACAAAT+GGG | - | chr6_1:10149252-10149271 | Msa0874320:intron | 15.0% |
| !!! | ACAGTTTAAAGTATATGTTT+TGG | - | chr6_1:10146779-10146798 | Msa0874320:CDS | 20.0% |
| !!! | TTAAAGTATATGTTTTGGTT+TGG | - | chr6_1:10146784-10146803 | Msa0874320:CDS | 20.0% |
| !! | TTAAACCAATTTAATTGGTT+TGG | - | chr6_1:10146990-10147009 | Msa0874320:CDS | 20.0% |
| !! | AGGATCTTAATCTTTAATAT+TGG | + | chr6_1:10147257-10147276 | Msa0874310:intron | 20.0% |
| !! | TAAACAAGTTATGATATGTA+AGG | - | chr6_1:10147318-10147337 | Msa0874320:intron | 20.0% |
| !! | GTATTCTAAATTTGTAACTA+AGG | - | chr6_1:10147412-10147431 | Msa0874320:intron | 20.0% |
| !! | TTATTCATTGTGTTGTAATT+TGG | - | chr6_1:10148219-10148238 | Msa0874320:intron | 20.0% |
| !! | TATTCATTGTGTTGTAATTT+GGG | - | chr6_1:10148220-10148239 | Msa0874320:intron | 20.0% |
| !!! | TTTGTTCTAAATTTTGTGAT+GGG | + | chr6_1:10148861-10148880 | Msa0874310:intron | 20.0% |
| !!! | ATTTGTTCTAAATTTTGTGA+TGG | + | chr6_1:10148862-10148881 | Msa0874310:intron | 20.0% |
| !! | TAATATTTCTTAAACAATCG+AGG | + | chr6_1:10149247-10149266 | Msa0874310:intron | 20.0% |
| !! | ATTATTGTTTCAATTAATGC+AGG | - | chr6_1:10149431-10149450 | Msa0874320:intron | 20.0% |
| !!! | AATGTCAAACATTTCATTTT+AGG | + | chr6_1:10149907-10149926 | Msa0874310:intron | 20.0% |
| ! | TAATTCCAAACCAAAACAAT+CGG | + | chr6_1:10146880-10146899 | Msa0874310:intron | 25.0% |
| !!! | GTTTGGAATTAGTTTTGTTT+TGG | - | chr6_1:10146889-10146908 | Msa0874320:CDS | 25.0% |
| ! | TCAATCCAAACCAATTAAAT+TGG | + | chr6_1:10146998-10147017 | Msa0874310:intron | 25.0% |
| ! | ATCCAAAACAGGAAAAAATA+GGG | + | chr6_1:10147059-10147078 | Msa0874310:intron | 25.0% |
| ! | AATCCAAAACAGGAAAAAAT+AGG | + | chr6_1:10147060-10147079 | Msa0874310:intron | 25.0% |
| ! | TAAATTGGATACTTAGAGAT+TGG | + | chr6_1:10147285-10147304 | Msa0874310:intron | 25.0% |
| ! | TAAATTTGTAACTAAGGGTT+TGG | - | chr6_1:10147418-10147437 | Msa0874320:intron | 25.0% |
| ! | AAATTTGTAACTAAGGGTTT+GGG | - | chr6_1:10147419-10147438 | Msa0874320:intron | 25.0% |
| !!! | TAAGTTTATTGGTTCTGTTA+TGG | - | chr6_1:10147489-10147508 | Msa0874320:intron | 25.0% |
| !! | GCTATTGTTTACTTTATTTG+AGG | - | chr6_1:10147802-10147821 | Msa0874320:intron | 25.0% |
| ! | TCGAAGATCAAAAAATATGA+GGG | + | chr6_1:10148155-10148174 | Msa0874310:intron | 25.0% |
| !!! | TTTTTTCGATATGTTATTGC+TGG | - | chr6_1:10148191-10148210 | Msa0874320:intron | 25.0% |
| !!! | TTACACTTCACTTTTTTAGT+TGG | - | chr6_1:10148374-10148393 | Msa0874320:intron | 25.0% |
| ! | TATAACAATCACAAGTACAT+CGG | + | chr6_1:10149000-10149019 | Msa0874310:intron | 25.0% |
| ! | CACAAAAAAATGCAAGAAAT+CGG | - | chr6_1:10149460-10149479 | Msa0874320:intron | 25.0% |
| ! | ACGTACATTATAAGATTGTT+TGG | - | chr6_1:10149683-10149702 | Msa0874320:intron | 25.0% |
| ! | AATTTGTCAATGAATATGCA+AGG | - | chr6_1:10149813-10149832 | Msa0874320:intron | 25.0% |
| ! | ATTTGTCAATGAATATGCAA+GGG | - | chr6_1:10149814-10149833 | Msa0874320:intron | 25.0% |
| !! | TTTTTGCACAATTGAAAAAG+AGG | - | chr6_1:10149861-10149880 | Msa0874320:intron | 25.0% |
| GGTGTAAGGATTAAACAAAT+CGG | + | chr6_1:10146828-10146847 | Msa0874310:intron | 30.0% | |
| TACCCAAACCAAAACTAATT+GGG | + | chr6_1:10146849-10146868 | Msa0874310:intron | 30.0% | |
| TTACCCAAACCAAAACTAAT+TGG | + | chr6_1:10146850-10146869 | Msa0874310:intron | 30.0% | |
| GGATTGAAATTCCAAATCTA+TGG | - | chr6_1:10147011-10147030 | Msa0874320:CDS | 30.0% | |
| AACAAATGACTCCATAGATT+TGG | + | chr6_1:10147025-10147044 | Msa0874310:intron | 30.0% | |
| ATGAAATCTGAATCCAAAAC+AGG | + | chr6_1:10147070-10147089 | Msa0874310:intron | 30.0% | |
| ! | TCTGGTTTATGAAGTTCAAA+TGG | - | chr6_1:10147223-10147242 | Msa0874320:intron | 30.0% |
| CTGGTTTATGAAGTTCAAAT+GGG | - | chr6_1:10147224-10147243 | Msa0874320:intron | 30.0% | |
| ! | ATACTTAGAGATTGGCTAAA+AGG | + | chr6_1:10147277-10147296 | Msa0874310:intron | 30.0% |
| CTATGATGGCTTATTAGTTA+GGG | - | chr6_1:10147458-10147477 | Msa0874320:intron | 30.0% | |
| GGGTCAAATCTTAAGTTTAT+TGG | - | chr6_1:10147478-10147497 | Msa0874320:intron | 30.0% | |
| TTAATTTATTCGTGAGCACT+AGG | - | chr6_1:10147704-10147723 | Msa0874320:intron | 30.0% | |
| ! | TAACGTGGTTGATTTATTTG+AGG | - | chr6_1:10147896-10147915 | Msa0874320:CDS | 30.0% |
| GTCGAAGATCAAAAAATATG+AGG | + | chr6_1:10148156-10148175 | Msa0874310:intron | 30.0% | |
| ! | TAGTTTGTATAATCACAGCT+AGG | + | chr6_1:10148329-10148348 | Msa0874310:intron | 30.0% |
| TTAAAGCAATGGATAAGTCA+TGG | - | chr6_1:10148501-10148520 | Msa0874320:intron | 30.0% | |
| ! | ATTTTCCACTTCGTCTTTAA+AGG | + | chr6_1:10148588-10148607 | Msa0874310:intron | 30.0% |
| !!! | TACTTTGCGGTTTTTTGAAA+CGG | + | chr6_1:10148640-10148659 | Msa0874310:intron | 30.0% |
| CAAATGAACAGGTATACATT+TGG | + | chr6_1:10148776-10148795 | Msa0874310:intron | 30.0% | |
| !!! | TCTAAATTTTGTGATGGGTA+TGG | + | chr6_1:10148856-10148875 | Msa0874310:intron | 30.0% |
| TCTTGCTAATTGTATATGTG+TGG | + | chr6_1:10148899-10148918 | Msa0874310:intron | 30.0% | |
| ATAACAATCACAAGTACATC+GGG | + | chr6_1:10148999-10149018 | Msa0874310:intron | 30.0% | |
| AAAGAAAAAACTAGCAGAGT+AGG | + | chr6_1:10149066-10149085 | Msa0874310:intron | 30.0% | |
| AAAGAAAAACTAGCAACAAG+AGG | + | chr6_1:10149147-10149166 | Msa0874310:intron | 30.0% | |
| GGAAAAAGACAAGTAAAAGT+AGG | + | chr6_1:10149226-10149245 | Msa0874310:intron | 30.0% | |
| ! | TTTTATTCACCCAGATCATT+GGG | - | chr6_1:10149315-10149334 | Msa0874320:intron | 30.0% |
| !!! | CTGTTTTTGTCAATTTTAGG+AGG | - | chr6_1:10149338-10149357 | Msa0874320:intron | 30.0% |
| !! | TTTTGTCAATTTTAGGAGGA+AGG | - | chr6_1:10149342-10149361 | Msa0874320:intron | 30.0% |
| ATACTCTACAATTTACCTGT+AGG | - | chr6_1:10149602-10149621 | Msa0874320:intron | 30.0% | |
| TTGATCTTATCATCTCATCT+AGG | - | chr6_1:10149640-10149659 | Msa0874320:intron | 30.0% | |
| TATCATATGTGCTTACTTGT+AGG | - | chr6_1:10149721-10149740 | Msa0874320:intron | 30.0% | |
| TACTTGTAGGAATTGAGATA+TGG | - | chr6_1:10149734-10149753 | Msa0874320:intron | 30.0% | |
| ! | TTCATTGACAAATTTTCCCT+TGG | + | chr6_1:10149807-10149826 | Msa0874310:intron | 30.0% |
| TTCAATGTTATGACCTCTTT+AGG | + | chr6_1:10149945-10149964 | Msa0874310:intron | 30.0% | |
| ! | TTAGCTATGGGTTTGAATTT+TGG | - | chr6_1:10150233-10150252 | Msa0874320:intron | 30.0% |
| ! | TAGCTATGGGTTTGAATTTT+GGG | - | chr6_1:10150234-10150253 | Msa0874320:intron | 30.0% |
| ! | ATGCAAGTTGAAATATATGC+AGG | - | chr6_1:10150337-10150356 | Msa0874320:intron | 30.0% |
| ATTTGTCAATGTGTTTGGAA+AGG | - | chr6_1:10150406-10150425 | Msa0874320:intron | 30.0% | |
| ATTATGGCACACATATTCAA+TGG | + | chr6_1:10150669-10150688 | Msa0874310:intron | 30.0% | |
| ! | GAATATGTGTGCCATAATTT+TGG | - | chr6_1:10150671-10150690 | Msa0874320:intron | 30.0% |
| AATGTAGGGAACCAAAATTA+TGG | + | chr6_1:10150685-10150704 | Msa0874310:intron | 30.0% | |
| GTAAGGATTAAACAAATCGG+TGG | + | chr6_1:10146825-10146844 | Msa0874310:intron | 35.0% | |
| !! | TCCTTACACCCAATTAGTTT+TGG | - | chr6_1:10146838-10146857 | Msa0874320:CDS | 35.0% |
| ACCAAAACTAATTGGGTGTA+AGG | + | chr6_1:10146842-10146861 | Msa0874310:intron | 35.0% | |
| !!! | ACACCCAATTAGTTTTGGTT+TGG | - | chr6_1:10146843-10146862 | Msa0874320:CDS | 35.0% |
| !!! | CACCCAATTAGTTTTGGTTT+GGG | - | chr6_1:10146844-10146863 | Msa0874320:CDS | 35.0% |
| !!! | TAAGATAGCACCGATTGTTT+TGG | - | chr6_1:10146867-10146886 | Msa0874320:CDS | 35.0% |
| ACAGGAAAAAATAGGGTGTA+AGG | + | chr6_1:10147052-10147071 | Msa0874310:intron | 35.0% | |
| !!! | CACCCTATTTTTTCCTGTTT+TGG | - | chr6_1:10147054-10147073 | Msa0874320:CDS | 35.0% |
| CCAGAGACAAAAAACGAAAT+GGG | + | chr6_1:10147208-10147227 | Msa0874310:intron | 35.0% | |
| ACCAGAGACAAAAAACGAAA+TGG | + | chr6_1:10147209-10147228 | Msa0874310:intron | 35.0% | |
| GCTATGATGGCTTATTAGTT+AGG | - | chr6_1:10147457-10147476 | Msa0874320:intron | 35.0% | |
| ATTACCAACGACTTTGAATC+TGG | + | chr6_1:10147839-10147858 | Msa0874310:intron | 35.0% | |
| CATTGCAAACATCTTTAACG+TGG | - | chr6_1:10147881-10147900 | Msa0874320:CDS | 35.0% | |
| !! | CTTATCGATTTGCTTCTGTT+TGG | - | chr6_1:10148257-10148276 | Msa0874320:intron | 35.0% |
| !! | TTTTGCCTTTAAAGACGAAG+TGG | - | chr6_1:10148580-10148599 | Msa0874320:intron | 35.0% |
| GTTTCAAAAAACCGCAAAGT+AGG | - | chr6_1:10148639-10148658 | Msa0874320:intron | 35.0% | |
| TAATGTTAGACCACCTAAAG+TGG | - | chr6_1:10148666-10148685 | Msa0874320:intron | 35.0% | |
| GGGTGGAAATGATGAAATTA+TGG | - | chr6_1:10148819-10148838 | Msa0874320:intron | 35.0% | |
| CAATCATCATCATCTGTAGT+CGG | + | chr6_1:10148922-10148941 | Msa0874310:intron | 35.0% | |
| TAACAATCACAAGTACATCG+GGG | + | chr6_1:10148998-10149017 | Msa0874310:intron | 35.0% | |
| TGCAAATAGCTAAGCAAAGT+AGG | + | chr6_1:10149172-10149191 | Msa0874310:intron | 35.0% | |
| CAAATGGGAATTCACATTAG+AGG | - | chr6_1:10149267-10149286 | Msa0874320:intron | 35.0% | |
| TGATCTGGGTGAATAAAACT+TGG | + | chr6_1:10149313-10149332 | Msa0874310:intron | 35.0% | |
| !! | GTTTTATTCACCCAGATCAT+TGG | - | chr6_1:10149314-10149333 | Msa0874320:intron | 35.0% |
| !!! | GGGCTGTTTTTGTCAATTTT+AGG | - | chr6_1:10149335-10149354 | Msa0874320:intron | 35.0% |
| !!! | CTAGTGTATGAGGAGTTTTT+TGG | + | chr6_1:10149491-10149510 | Msa0874310:intron | 35.0% |
| CAAAAAACTCCTCATACACT+AGG | - | chr6_1:10149489-10149508 | Msa0874320:intron | 35.0% | |
| !! | TCAGAAAAGATGAGTTGGTA+TGG | - | chr6_1:10149529-10149548 | Msa0874320:intron | 35.0% |
| ATATGGTCGAGAATATAGCA+GGG | - | chr6_1:10149751-10149770 | Msa0874320:intron | 35.0% | |
| CACTGTATTATTGCCTAAAG+AGG | - | chr6_1:10149929-10149948 | Msa0874320:intron | 35.0% | |
| ! | CCAATTTGGGTCTTTTTGTT+GGG | - | chr6_1:10150189-10150208 | Msa0874320:intron | 35.0% |
| ! | CAATTTGGGTCTTTTTGTTG+GGG | - | chr6_1:10150190-10150209 | Msa0874320:intron | 35.0% |
| ACTAGATTTCAAAGTCGTAG+TGG | - | chr6_1:10150263-10150282 | Msa0874320:intron | 35.0% | |
| AACTTGCATTTCAACAACAC+AGG | + | chr6_1:10150326-10150345 | Msa0874310:intron | 35.0% | |
| ! | GAAGCATTTGTCAATGTGTT+TGG | - | chr6_1:10150401-10150420 | Msa0874320:intron | 35.0% |
| !! | TTCAGAAGTTGATGTCTTGA+AGG | - | chr6_1:10150577-10150596 | Msa0874320:intron | 35.0% |
| ! | GCAAAATTCTAGAGACAAAG+AGG | - | chr6_1:10150631-10150650 | Msa0874320:intron | 35.0% |
| ACTCTGTTCTTCTCCTCAAT+CGG | - | chr6_1:10146733-10146752 | Msa0874320:CDS | 40.0% | |
| AGGATTAAACAAATCGGTGG+AGG | + | chr6_1:10146822-10146841 | Msa0874310:intron | 40.0% | |
| !!! | TAGCACCGATTGTTTTGGTT+TGG | - | chr6_1:10146872-10146891 | Msa0874320:CDS | 40.0% |
| !!! | CCCATTTCGTTTTTTGTCTC+TGG | - | chr6_1:10147205-10147224 | Msa0874320:intron | 40.0% |
| CTCAAACTTTGCTGCTATGA+TGG | - | chr6_1:10147444-10147463 | Msa0874320:intron | 40.0% | |
| TTATTCGTGAGCACTAGGTT+AGG | - | chr6_1:10147709-10147728 | Msa0874320:intron | 40.0% | |
| GCTTACAACAGATTCACAAC+AGG | - | chr6_1:10147999-10148018 | Msa0874320:intron | 40.0% | |
| !!! | CTGTTTGGTGCTTTTTGTGA+AGG | - | chr6_1:10148272-10148291 | Msa0874320:intron | 40.0% |
| GATTATGAAGCCACAAACGT+CGG | - | chr6_1:10148523-10148542 | Msa0874320:intron | 40.0% | |
| TTGAAACGGCAAACTCTACA+GGG | + | chr6_1:10148626-10148645 | Msa0874310:intron | 40.0% | |
| ! | TTTGAAACGGCAAACTCTAC+AGG | + | chr6_1:10148627-10148646 | Msa0874310:intron | 40.0% |
| AACATTACGCTCCTACTTTG+CGG | + | chr6_1:10148653-10148672 | Msa0874310:intron | 40.0% | |
| TTGGAAATGGTGACCACTTT+AGG | + | chr6_1:10148682-10148701 | Msa0874310:intron | 40.0% | |
| AAAGTGGTCACCATTTCCAA+CGG | - | chr6_1:10148682-10148701 | Msa0874320:intron | 40.0% | |
| GACACTACTAGTTACTCCTA+AGG | + | chr6_1:10148738-10148757 | Msa0874310:intron | 40.0% | |
| TCTCTTGGCTTCAAATGAAC+AGG | + | chr6_1:10148787-10148806 | Msa0874310:intron | 40.0% | |
| CCAAGAGACTTGTATGACAT+GGG | - | chr6_1:10148799-10148818 | Msa0874320:intron | 40.0% | |
| CAAAAACAGCCCAATGATCT+GGG | + | chr6_1:10149327-10149346 | Msa0874310:intron | 40.0% | |
| ACAAAAACAGCCCAATGATC+TGG | + | chr6_1:10149328-10149347 | Msa0874310:intron | 40.0% | |
| TGCGATCAGAAAAGATGAGT+TGG | - | chr6_1:10149524-10149543 | Msa0874320:intron | 40.0% | |
| AGGCAATTAGTGATCTCATC+TGG | - | chr6_1:10149660-10149679 | Msa0874320:intron | 40.0% | |
| GATATGGTCGAGAATATAGC+AGG | - | chr6_1:10149750-10149769 | Msa0874320:intron | 40.0% | |
| TATGGTCGAGAATATAGCAG+GGG | - | chr6_1:10149752-10149771 | Msa0874320:intron | 40.0% | |
| TGTTTCGCATAAAGATGCCA+AGG | - | chr6_1:10149787-10149806 | Msa0874320:intron | 40.0% | |
| GTTTCGCATAAAGATGCCAA+GGG | - | chr6_1:10149788-10149807 | Msa0874320:intron | 40.0% | |
| ! | TTCATTTTAGGCGAGCTATG+AGG | + | chr6_1:10149895-10149914 | Msa0874310:intron | 40.0% |
| ! | GCCAATTTGGGTCTTTTTGT+TGG | - | chr6_1:10150188-10150207 | Msa0874320:intron | 40.0% |
| CCCAACAAAAAGACCCAAAT+TGG | + | chr6_1:10150192-10150211 | Msa0874310:intron | 40.0% | |
| ! | TTTTTGTTGGGGTTGTTCAG+AGG | - | chr6_1:10150201-10150220 | Msa0874320:intron | 40.0% |
| ! | TTTTGTTGGGGTTGTTCAGA+GGG | - | chr6_1:10150202-10150221 | Msa0874320:intron | 40.0% |
| GTGTTTGGAAAGGAATATGC+TGG | - | chr6_1:10150416-10150435 | Msa0874320:intron | 40.0% | |
| TGCTGGATATGTTCGTTCTA+TGG | - | chr6_1:10150433-10150452 | Msa0874320:intron | 40.0% | |
| GCTGGATATGTTCGTTCTAT+GGG | - | chr6_1:10150434-10150453 | Msa0874320:intron | 40.0% | |
| CTGGATATGTTCGTTCTATG+GGG | - | chr6_1:10150435-10150454 | Msa0874320:intron | 40.0% | |
| GAGTGATTAGAGATTCGAGA+TGG | + | chr6_1:10150473-10150492 | Msa0874310:intron | 40.0% | |
| !! | CATTTTCTCATTAGCCTCGA+TGG | + | chr6_1:10150516-10150535 | Msa0874310:intron | 40.0% |
| CTCCTTGAGAGAATCAATCT+CGG | + | chr6_1:10150552-10150571 | Msa0874310:intron | 40.0% | |
| ! | GATTGATTCTCTCAAGGAGA+AGG | - | chr6_1:10150553-10150572 | Msa0874320:intron | 40.0% |
| ATGGCACACATATTCAATGG+AGG | + | chr6_1:10150666-10150685 | Msa0874310:intron | 40.0% | |
| !! | CACTTTTTGACCACCGATTG+AGG | + | chr6_1:10146749-10146768 | Msa0874310:intron | 45.0% |
| CTCAATCGGTGGTCAAAAAG+TGG | - | chr6_1:10146747-10146766 | Msa0874320:CDS | 45.0% | |
| TGTCACATTCAGATGGCACT+AGG | - | chr6_1:10147737-10147756 | Msa0874320:intron | 45.0% | |
| CATTCAGATGGCACTAGGTT+AGG | - | chr6_1:10147742-10147761 | Msa0874320:intron | 45.0% | |
| GTCACCAGATTCAAAGTCGT+TGG | - | chr6_1:10147832-10147851 | Msa0874320:intron | 45.0% | |
| GTAGGCACAAACAGAGTTGA+TGG | + | chr6_1:10148058-10148077 | Msa0874310:intron | 45.0% | |
| AGAGCGACACAAAAGGAAGT+AGG | + | chr6_1:10148076-10148095 | Msa0874310:intron | 45.0% | |
| !! | CTTTTGTGTCGCTCTCTGTT+CGG | - | chr6_1:10148081-10148100 | Msa0874320:intron | 45.0% |
| TGAAACGGCAAACTCTACAG+GGG | + | chr6_1:10148625-10148644 | Msa0874310:intron | 45.0% | |
| GAAATGGTGACCACTTTAGG+TGG | + | chr6_1:10148679-10148698 | Msa0874310:intron | 45.0% | |
| AAGTGGTCACCATTTCCAAC+GGG | - | chr6_1:10148683-10148702 | Msa0874320:intron | 45.0% | |
| TACACTGTTTGGCTGCATCA+TGG | - | chr6_1:10148707-10148726 | Msa0874320:intron | 45.0% | |
| ACACTGTTTGGCTGCATCAT+GGG | - | chr6_1:10148708-10148727 | Msa0874320:intron | 45.0% | |
| GCCAAGAGACTTGTATGACA+TGG | - | chr6_1:10148798-10148817 | Msa0874320:intron | 45.0% | |
| CCCATGTCATACAAGTCTCT+TGG | + | chr6_1:10148802-10148821 | Msa0874310:intron | 45.0% | |
| AGAGACTTGTATGACATGGG+TGG | - | chr6_1:10148802-10148821 | Msa0874320:intron | 45.0% | |
| !! | TGTGATGGGTATGGCTGAAT+GGG | + | chr6_1:10148847-10148866 | Msa0874310:intron | 45.0% |
| !! | TTGTGATGGGTATGGCTGAA+TGG | + | chr6_1:10148848-10148867 | Msa0874310:intron | 45.0% |
| GAGTCAGTTCCTAGTGTATG+AGG | + | chr6_1:10149501-10149520 | Msa0874310:intron | 45.0% | |
| CTAAAGAGAGATGTGCCTAC+AGG | + | chr6_1:10149620-10149639 | Msa0874310:intron | 45.0% | |
| TACCTCAAAAGACAATCGCG+AGG | + | chr6_1:10150010-10150029 | Msa0874310:intron | 45.0% | |
| !! | GGGTTGGTTGTGATTGTGTT+AGG | - | chr6_1:10150161-10150180 | Msa0874320:intron | 45.0% |
| ! | TGTGTTAGGTGCTGCCAATT+TGG | - | chr6_1:10150175-10150194 | Msa0874320:intron | 45.0% |
| ! | GTGTTAGGTGCTGCCAATTT+GGG | - | chr6_1:10150176-10150195 | Msa0874320:intron | 45.0% |
| TTTGTTGGGGTTGTTCAGAG+GGG | - | chr6_1:10150203-10150222 | Msa0874320:intron | 45.0% | |
| !! | AGGGGTATTGGCTTAGCTAT+GGG | - | chr6_1:10150221-10150240 | Msa0874320:intron | 45.0% |
| TATGTTCGTTCTATGGGGCT+TGG | - | chr6_1:10150440-10150459 | Msa0874320:intron | 45.0% | |
| ! | ATTAGCCTCATCTTCCATCG+AGG | - | chr6_1:10150499-10150518 | Msa0874320:intron | 45.0% |
| ! | ATTAGCCTCGATGGAAGATG+AGG | + | chr6_1:10150507-10150526 | Msa0874310:intron | 45.0% |
| ! | AGCCGAGATTGATTCTCTCA+AGG | - | chr6_1:10150547-10150566 | Msa0874320:intron | 45.0% |
| !!! | TTTTTATTTTTTAAAGAATT+TGG | - | chr6_1:10146703-10146722 | Msa0874320:CDS | 5.0% |
| CTGTTCTTCTCCTCAATCGG+TGG | - | chr6_1:10146736-10146755 | Msa0874320:CDS | 50.0% | |
| TTCGTGAGCACTAGGTTAGG+AGG | - | chr6_1:10147712-10147731 | Msa0874320:intron | 50.0% | |
| ! | GGAGGCATGTCACATTCAGA+TGG | - | chr6_1:10147730-10147749 | Msa0874320:intron | 50.0% |
| CGCAAGTGAGTGTGTATGTG+TGG | - | chr6_1:10147767-10147786 | Msa0874320:intron | 50.0% | |
| CGAACAGAGAGCGACACAAA+AGG | + | chr6_1:10148083-10148102 | Msa0874310:intron | 50.0% | |
| AGTGGTCACCATTTCCAACG+GGG | - | chr6_1:10148684-10148703 | Msa0874320:intron | 50.0% | |
| ACAGTGTACCCCGTTGGAAA+TGG | + | chr6_1:10148695-10148714 | Msa0874310:intron | 50.0% | |
| TTCCAACGGGGTACACTGTT+TGG | - | chr6_1:10148696-10148715 | Msa0874320:intron | 50.0% | |
| CACTGTTTGGCTGCATCATG+GGG | - | chr6_1:10148709-10148728 | Msa0874320:intron | 50.0% | |
| ! | TGATGGGTATGGCTGAATGG+GGG | + | chr6_1:10148845-10148864 | Msa0874310:intron | 50.0% |
| !! | GTGATGGGTATGGCTGAATG+GGG | + | chr6_1:10148846-10148865 | Msa0874310:intron | 50.0% |
| TAGGAGGAAGGCTGAACAAG+TGG | - | chr6_1:10149354-10149373 | Msa0874320:intron | 50.0% | |
| ! | TGCCTCGCGATTGTCTTTTG+AGG | - | chr6_1:10150005-10150024 | Msa0874320:intron | 50.0% |
| CAGACACGAACAACAACCAC+AGG | + | chr6_1:10150046-10150065 | Msa0874310:intron | 50.0% | |
| ! | CTGTGGTTGTTGTTCGTGTC+TGG | - | chr6_1:10150044-10150063 | Msa0874320:intron | 50.0% |
| TGTTGTTCGTGTCTGGCTGT+TGG | - | chr6_1:10150051-10150070 | Msa0874320:intron | 50.0% | |
| GTTGTTCGTGTCTGGCTGTT+GGG | - | chr6_1:10150052-10150071 | Msa0874320:intron | 50.0% | |
| TTGTTCGTGTCTGGCTGTTG+GGG | - | chr6_1:10150053-10150072 | Msa0874320:intron | 50.0% | |
| TGCTGTTCTGTCATGACAGC+AGG | + | chr6_1:10150100-10150119 | Msa0874310:intron | 50.0% | |
| CATGACAGAACAGCAGCTGT+TGG | - | chr6_1:10150105-10150124 | Msa0874320:intron | 50.0% | |
| !! | GCTGTTGGTGCTGTTTCTGT+CGG | - | chr6_1:10150120-10150139 | Msa0874320:intron | 50.0% |
| !! | GAGGGGTATTGGCTTAGCTA+TGG | - | chr6_1:10150220-10150239 | Msa0874320:intron | 50.0% |
| ! | CCACAAACGTCGGCTGCATA+CGG | - | chr6_1:10148533-10148552 | Msa0874320:intron | 55.0% |
| ! | CACAAACGTCGGCTGCATAC+GGG | - | chr6_1:10148534-10148553 | Msa0874320:intron | 55.0% |
| TGCATACGGGCAAGGGATAG+TGG | - | chr6_1:10148547-10148566 | Msa0874320:intron | 55.0% | |
| AGCCAAACAGTGTACCCCGT+TGG | + | chr6_1:10148701-10148720 | Msa0874310:intron | 55.0% | |
| CTGCATCATGGGGAGTCCTT+AGG | - | chr6_1:10148719-10148738 | Msa0874320:intron | 55.0% | |
| GTAACAGTGCGACTGTCCTG+TGG | - | chr6_1:10150027-10150046 | Msa0874320:intron | 55.0% | |
| TGTTCGTGTCTGGCTGTTGG+GGG | - | chr6_1:10150054-10150073 | Msa0874320:intron | 55.0% | |
| !! | TTGGTGCTGTTTCTGTCGGC+TGG | - | chr6_1:10150124-10150143 | Msa0874320:intron | 55.0% |
| !! | TGGTGCTGTTTCTGTCGGCT+GGG | - | chr6_1:10150125-10150144 | Msa0874320:intron | 55.0% |
| !!! | GGCTGGGCAGCTGGTTTTTT+GGG | - | chr6_1:10150141-10150160 | Msa0874320:intron | 55.0% |
| !!! | GGGCAGCTGGTTTTTTGGGT+TGG | - | chr6_1:10150145-10150164 | Msa0874320:intron | 55.0% |
| ! | GGGGTTGTTCAGAGGGGTAT+TGG | - | chr6_1:10150209-10150228 | Msa0874320:intron | 55.0% |
| CTCTCTGTTCGGCGCGCTAT+TGG | - | chr6_1:10148092-10148111 | Msa0874320:intron | 60.0% | |
| CCGTATGCAGCCGACGTTTG+TGG | + | chr6_1:10148536-10148555 | Msa0874310:intron | 60.0% | |
| TGTTGGGGGTCCTGTGGCTT+CGG | - | chr6_1:10150068-10150087 | Msa0874320:intron | 60.0% | |
| ! | GGGTCCTGTGGCTTCGGTTT+TGG | - | chr6_1:10150074-10150093 | Msa0874320:intron | 60.0% |
| CAGGCCAAAACCGAAGCCAC+AGG | + | chr6_1:10150081-10150100 | Msa0874310:intron | 60.0% | |
| !!! | CGGCTGGGCAGCTGGTTTTT+TGG | - | chr6_1:10150140-10150159 | Msa0874320:intron | 60.0% |
| ! | ACGTCGGCTGCATACGGGCA+AGG | - | chr6_1:10148539-10148558 | Msa0874320:intron | 65.0% |
| ! | CGTCGGCTGCATACGGGCAA+GGG | - | chr6_1:10148540-10148559 | Msa0874320:intron | 65.0% |
| TCTGGCTGTTGGGGGTCCTG+TGG | - | chr6_1:10150062-10150081 | Msa0874320:intron | 65.0% | |
| ! | GTTTCTGTCGGCTGGGCAGC+TGG | - | chr6_1:10150132-10150151 | Msa0874320:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 10146686 | 10150706 | 10146686 | ID=Msa0874320;Name=Msa0874320 |
| chr6_1 | mRNA | 10146686 | 10150706 | 10146686 | ID=Msa0874320-mRNA-1;Parent=Msa0874320;Name=Msa0874320-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.25|0.2|0.6|1|1|5|0|242 |
| chr6_1 | exon | 10150698 | 10150706 | 10150698 | ID=Msa0874320-mRNA-1:exon:3106;Parent=Msa0874320-mRNA-1 |
| chr6_1 | exon | 10150635 | 10150673 | 10150635 | ID=Msa0874320-mRNA-1:exon:3105;Parent=Msa0874320-mRNA-1 |
| chr6_1 | exon | 10147847 | 10147939 | 10147847 | ID=Msa0874320-mRNA-1:exon:3104;Parent=Msa0874320-mRNA-1 |
| chr6_1 | exon | 10147548 | 10147649 | 10147548 | ID=Msa0874320-mRNA-1:exon:3103;Parent=Msa0874320-mRNA-1 |
| chr6_1 | exon | 10146686 | 10147171 | 10146686 | ID=Msa0874320-mRNA-1:exon:3102;Parent=Msa0874320-mRNA-1 |
| chr6_1 | CDS | 10150698 | 10150706 | 10150698 | ID=Msa0874320-mRNA-1:cds;Parent=Msa0874320-mRNA-1 |
| chr6_1 | CDS | 10150635 | 10150673 | 10150635 | ID=Msa0874320-mRNA-1:cds;Parent=Msa0874320-mRNA-1 |
| chr6_1 | CDS | 10147847 | 10147939 | 10147847 | ID=Msa0874320-mRNA-1:cds;Parent=Msa0874320-mRNA-1 |
| chr6_1 | CDS | 10147548 | 10147649 | 10147548 | ID=Msa0874320-mRNA-1:cds;Parent=Msa0874320-mRNA-1 |
| chr6_1 | CDS | 10146686 | 10147171 | 10146686 | ID=Msa0874320-mRNA-1:cds;Parent=Msa0874320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
