AlfalfaGEDB | Msa0685060

M. sativa cultivar zhongmu-4 / Msa0685060

KEGG: K01188|K01237
GO: GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0004565 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0015925 GO:0015926 GO:0016143 GO:0016145 GO:0016787 GO:0016798 GO:0019137 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0033907 GO:0042221 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0047701 GO:0050896 GO:0071704 GO:0080083 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658
PFAM: PF00232.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0685060	QCD88440.1	74.532	962	196	7	35	948	60	1020	0.0	1503
Msa0685060	QCD88440.1	76.327	490	88	4	474	936	18	506	0.0	775

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0685060	sp\|P09848\|LPH_HUMAN	39.004	964	503	28	27	943	911	1836	0.0	625
Msa0685060	sp\|P09848\|LPH_HUMAN	36.254	993	516	30	35	942	399	1359	3.16e-176	563
Msa0685060	sp\|P09848\|LPH_HUMAN	37.526	477	258	15	497	944	379	844	1.72e-80	290

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0685060	A0A4D6LIU6	74.532	962	196	7	35	948	60	1020	0.0	1503
Msa0685060	A0A4D6LIU6	76.327	490	88	4	474	936	18	506	0.0	775

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0013270	Msa0685060	0.850649	1.481367e-60	-8.615850e-47
Msa0025570	Msa0685060	0.821778	3.369831e-53	-8.615850e-47
Msa0038650	Msa0685060	-0.809727	1.639780e-50	-8.615850e-47
Msa0044310	Msa0685060	0.802649	5.076547e-49	-8.615850e-47
Msa0045810	Msa0685060	0.806621	7.526370e-50	-8.615850e-47
Msa0062190	Msa0685060	0.831423	1.683877e-55	-8.615850e-47
Msa0072180	Msa0685060	0.808161	3.548425e-50	-8.615850e-47
Msa0073110	Msa0685060	0.812911	3.340512e-51	-8.615850e-47
Msa0095890	Msa0685060	-0.806173	9.355671e-50	-8.615850e-47
Msa0106540	Msa0685060	0.836025	1.191377e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0685060	MtrunA17_Chr4g0033311	92.126	508	13	3	474	954	18	525	946
Msa0685060	MtrunA17_Chr4g0033311	76.957	447	95	2	35	473	61	507	737
Msa0685060	MtrunA17_Chr4g0033401	86.998	523	31	5	1	489	1	520	910
Msa0685060	MtrunA17_Chr4g0033401	72.690	487	106	3	492	951	31	517	746
Msa0685060	MtrunA17_Chr4g0033321	89.307	505	18	5	1	473	1	501	905
Msa0685060	MtrunA17_Chr4g0033321	70.530	509	121	4	470	951	10	516	750
Msa0685060	MtrunA17_Chr3g0088441	84.325	504	52	3	478	954	21	524	882
Msa0685060	MtrunA17_Chr3g0088441	75.168	447	103	2	35	473	60	506	724
Msa0685060	MtrunA17_Chr4g0033331	82.970	505	52	4	1	473	5	507	828
Msa0685060	MtrunA17_Chr4g0033331	71.543	499	114	4	477	948	22	519	744

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0685060	AT2G44480.1	53.958	480	195	3	493	946	33	512	0.0	540
Msa0685060	AT2G44480.1	52.573	447	203	3	35	473	57	502	4.06e-166	496
Msa0685060	AT2G44480.3	53.958	480	195	3	493	946	64	543	0.0	540
Msa0685060	AT2G44480.3	52.573	447	203	3	35	473	88	533	7.89e-166	496
Msa0685060	AT2G44450.1	54.298	477	188	5	495	945	31	503	5.42e-179	528
Msa0685060	AT2G44450.1	54.036	446	192	4	35	472	53	493	1.62e-169	504
Msa0685060	AT5G44640.1	52.410	498	206	5	477	947	13	506	8.63e-179	528
Msa0685060	AT5G44640.1	53.915	447	192	5	35	472	53	494	2.67e-169	504
Msa0685060	AT5G42260.1	55.414	471	179	5	495	938	31	497	1.58e-178	527
Msa0685060	AT5G42260.1	54.139	447	191	5	35	472	53	494	7.41e-169	503

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Find 174 sgRNAs with CRISPR-Local

Find 628 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATGCGAGCCTTGGTT+AGG	0.500945	4_4:-49080768	Msa0685060:CDS
AAAAGACTTTCAAGACTATG+CGG	0.704652	4_4:-49081263	Msa0685060:CDS
AAAAGATATCAAAAGCTCTC+AGG	0.470702	4_4:-49079758	Msa0685060:CDS
AAAAGATCACGAATTCCTCT+TGG	0.485304	4_4:+49070320	None:intergenic
AAAAGCATGAGAGCCCTCGT+TGG	0.645860	4_4:-49070665	Msa0685060:CDS
AAAATCAGTGATGGAAACAA+TGG	0.553564	4_4:-49081765	Msa0685060:CDS
AAAGTACAAGAAATCTCAAA+AGG	0.432795	4_4:-49070923	Msa0685060:CDS
AAATCTCAAAAGGGCGTAAT+AGG	0.261458	4_4:-49070913	Msa0685060:CDS
AACACTGAACCACTGCAAAT+AGG	0.392837	4_4:-49081924	Msa0685060:intron
AACACTTACATTTAGACCAA+TGG	0.493905	4_4:+49080458	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATCCTCAAAAAATCAGTGA+TGG	-	chr4_4:49069983-49070002	Msa0685060:intron	30.0%
AATCATGAAGGATATGAACT+TGG	-	chr4_4:49070060-49070079	Msa0685060:CDS	30.0%
TCAATTGACTAGACATACTT+GGG	+	chr4_4:49070123-49070142	None:intergenic	30.0%
TTCAATTGACTAGACATACT+TGG	+	chr4_4:49070124-49070143	None:intergenic	30.0%
CAACAACCTCATTGATAAAT+TGG	-	chr4_4:49070279-49070298	Msa0685060:CDS	30.0%
TATATTACTCACATGATGAG+AGG	+	chr4_4:49070391-49070410	None:intergenic	30.0%
AAAAGACTTTCAAGACTATG+CGG	-	chr4_4:49070494-49070513	Msa0685060:intron	30.0%
GAACTTTGCTTCAAAACATT+TGG	-	chr4_4:49070516-49070535	Msa0685060:intron	30.0%
TTGGAGATAGAGTTAAACAT+TGG	-	chr4_4:49070535-49070554	Msa0685060:intron	30.0%
GGATAACTTTAAATGAACCA+TGG	-	chr4_4:49070556-49070575	Msa0685060:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	49069752	49082027	49069752	ID=Msa0685060;Name=Msa0685060
chr4_4	mRNA	49069752	49082027	49069752	ID=Msa0685060-mRNA-1;Parent=Msa0685060;Name=Msa0685060-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|0.28\|0.22\|1\|0.76\|0.68\|22\|0\|954
chr4_4	exon	49081925	49082027	49081925	ID=Msa0685060-mRNA-1:exon:12191;Parent=Msa0685060-mRNA-1
chr4_4	exon	49081655	49081852	49081655	ID=Msa0685060-mRNA-1:exon:12190;Parent=Msa0685060-mRNA-1
chr4_4	exon	49081381	49081546	49081381	ID=Msa0685060-mRNA-1:exon:12189;Parent=Msa0685060-mRNA-1
chr4_4	exon	49081173	49081285	49081173	ID=Msa0685060-mRNA-1:exon:12188;Parent=Msa0685060-mRNA-1
chr4_4	exon	49080923	49081157	49080923	ID=Msa0685060-mRNA-1:exon:12187;Parent=Msa0685060-mRNA-1
chr4_4	exon	49080608	49080825	49080608	ID=Msa0685060-mRNA-1:exon:12186;Parent=Msa0685060-mRNA-1
chr4_4	exon	49080467	49080498	49080467	ID=Msa0685060-mRNA-1:exon:12185;Parent=Msa0685060-mRNA-1
chr4_4	exon	49080271	49080373	49080271	ID=Msa0685060-mRNA-1:exon:12184;Parent=Msa0685060-mRNA-1
chr4_4	exon	49079991	49080099	49079991	ID=Msa0685060-mRNA-1:exon:12183;Parent=Msa0685060-mRNA-1
chr4_4	exon	49079755	49079895	49079755	ID=Msa0685060-mRNA-1:exon:12182;Parent=Msa0685060-mRNA-1
chr4_4	exon	49072224	49072347	49072224	ID=Msa0685060-mRNA-1:exon:12181;Parent=Msa0685060-mRNA-1
chr4_4	exon	49072029	49072098	49072029	ID=Msa0685060-mRNA-1:exon:12180;Parent=Msa0685060-mRNA-1
chr4_4	exon	49071864	49071922	49071864	ID=Msa0685060-mRNA-1:exon:12179;Parent=Msa0685060-mRNA-1
chr4_4	exon	49071666	49071741	49071666	ID=Msa0685060-mRNA-1:exon:12178;Parent=Msa0685060-mRNA-1
chr4_4	exon	49071471	49071548	49071471	ID=Msa0685060-mRNA-1:exon:12177;Parent=Msa0685060-mRNA-1
chr4_4	exon	49071288	49071375	49071288	ID=Msa0685060-mRNA-1:exon:12176;Parent=Msa0685060-mRNA-1
chr4_4	exon	49071064	49071191	49071064	ID=Msa0685060-mRNA-1:exon:12175;Parent=Msa0685060-mRNA-1
chr4_4	exon	49070829	49071024	49070829	ID=Msa0685060-mRNA-1:exon:12174;Parent=Msa0685060-mRNA-1
chr4_4	exon	49070537	49070721	49070537	ID=Msa0685060-mRNA-1:exon:12173;Parent=Msa0685060-mRNA-1
chr4_4	exon	49070267	49070401	49070267	ID=Msa0685060-mRNA-1:exon:12172;Parent=Msa0685060-mRNA-1
chr4_4	exon	49070046	49070154	49070046	ID=Msa0685060-mRNA-1:exon:12171;Parent=Msa0685060-mRNA-1
chr4_4	exon	49069752	49069947	49069752	ID=Msa0685060-mRNA-1:exon:12170;Parent=Msa0685060-mRNA-1
chr4_4	CDS	49081925	49082027	49081925	ID=Msa0685060-mRNA-1:cds;Parent=Msa0685060-mRNA-1
chr4_4	CDS	49081655	49081852	49081655	ID=Msa0685060-mRNA-1:cds;Parent=Msa0685060-mRNA-1
chr4_4	CDS	49081381	49081546	49081381	ID=Msa0685060-mRNA-1:cds;Parent=Msa0685060-mRNA-1
chr4_4	CDS	49081173	49081285	49081173	ID=Msa0685060-mRNA-1:cds;Parent=Msa0685060-mRNA-1
chr4_4	CDS	49080923	49081157	49080923	ID=Msa0685060-mRNA-1:cds;Parent=Msa0685060-mRNA-1
chr4_4	CDS	49080608	49080825	49080608	ID=Msa0685060-mRNA-1:cds;Parent=Msa0685060-mRNA-1
chr4_4	CDS	49080467	49080498	49080467	ID=Msa0685060-mRNA-1:cds;Parent=Msa0685060-mRNA-1
chr4_4	CDS	49080271	49080373	49080271	ID=Msa0685060-mRNA-1:cds;Parent=Msa0685060-mRNA-1
chr4_4	CDS	49079991	49080099	49079991	ID=Msa0685060-mRNA-1:cds;Parent=Msa0685060-mRNA-1
chr4_4	CDS	49079755	49079895	49079755	ID=Msa0685060-mRNA-1:cds;Parent=Msa0685060-mRNA-1
chr4_4	CDS	49072224	49072347	49072224	ID=Msa0685060-mRNA-1:cds;Parent=Msa0685060-mRNA-1
chr4_4	CDS	49072029	49072098	49072029	ID=Msa0685060-mRNA-1:cds;Parent=Msa0685060-mRNA-1
chr4_4	CDS	49071864	49071922	49071864	ID=Msa0685060-mRNA-1:cds;Parent=Msa0685060-mRNA-1
chr4_4	CDS	49071666	49071741	49071666	ID=Msa0685060-mRNA-1:cds;Parent=Msa0685060-mRNA-1
chr4_4	CDS	49071471	49071548	49071471	ID=Msa0685060-mRNA-1:cds;Parent=Msa0685060-mRNA-1
chr4_4	CDS	49071288	49071375	49071288	ID=Msa0685060-mRNA-1:cds;Parent=Msa0685060-mRNA-1
chr4_4	CDS	49071064	49071191	49071064	ID=Msa0685060-mRNA-1:cds;Parent=Msa0685060-mRNA-1
chr4_4	CDS	49070829	49071024	49070829	ID=Msa0685060-mRNA-1:cds;Parent=Msa0685060-mRNA-1
chr4_4	CDS	49070537	49070721	49070537	ID=Msa0685060-mRNA-1:cds;Parent=Msa0685060-mRNA-1
chr4_4	CDS	49070267	49070401	49070267	ID=Msa0685060-mRNA-1:cds;Parent=Msa0685060-mRNA-1
chr4_4	CDS	49070046	49070154	49070046	ID=Msa0685060-mRNA-1:cds;Parent=Msa0685060-mRNA-1
chr4_4	CDS	49069752	49069947	49069752	ID=Msa0685060-mRNA-1:cds;Parent=Msa0685060-mRNA-1

Gene Sequence

>Msa0685060

ATGAGATATTTCCTATTTTTTCTCTTCTTGTCTTTAGTTTCAACATTCATCATTACTTTAACAGAAGGTCAAGAAATAATTAACACTGAACCACTGCAAATAGGTGCAGCAAGTGAAGGTGGAAGAGGACCAAGTATATGGGATACCTTCACTCATAGATATCCTCAAAAAATCAGTGATGGAAACAATGGAGACGTTGCAGTTGACTCGTATCATCGATATAAGGAAGATGTTGGAATCATGAAGGATATGAACTTGGATGCATACAGATTTTCTATATCTTGGTCTAGAATACTCCCAAATGGAAAACTAAGTGGAGGAATTAATCAAGAAGGAATCGACTATTACAACAACCTCATTGATAAATTGGTGGCAAATGGATTACAACCATTTGTAACTCTTTTTCATTGGGATCTTCCTCAAACTCTAGAAGATGAATATGGCGGCTTCTTAAGTCCTCTCATCATAAAAGACTTTCAAGACTATGCGGAACTTTGCTTCAAAACATTTGGAGATAGAGTTAAACATTGGATAACTTTAAATGAACCATGGACTTACAGTCAAGATGGGTATGCAAATGGTCGATGTTCTTCTTGGTTGAATCCAAATTGCACCGGTGGTGATTCTGGAACCGAACCATATTTAGTTGCACATTATCAACTTCTAGCTCATGCAGCAGTTGTTAATTTGTACAAGACCAAGTATCAAGTCTCTCAAAAGGGTGTGATAGGCATAACATTGGTTATTAACTATTTTGTGCCACTCTCAGATAACAAACTTGATATAAAGGCTGCTGAAAGAGCTACAGACTTCATGTTTATGGATCCCCTAAGCAATGGAGATTATCCAAAAAACATGCGAGCCTTGGTTAGGTCACGATTACCAAAGTTTACAAAAGAGCAATCAAGGCTAGTGAGTGGTTCATTTGATTTTATTGGCATAAATTACTACTCTTCATGCTATGCTTCTGATGCACCTCAGTTGAGCAATGGCAAACCTAGCTACCTAACAGATTCACTTTCTCGTTTTTCATTTCAACGTGATGGAAAAACCATTGGTCTAAATGTTGCTTCAAATTGGTTGTATGTTTATCCAAGAGCAATTCGAGACTTTCTGATACAAGTTAAAGAAAAATACAACAACCCTTTAATTTATATTACTGAAAATGGTATTAATGAGTACGATGATCCATCGTTATCACTTGAGGAATCACTTATGGATACGTATAGAGTTGATTATCATTATCGTCATTTATTCAATCTTAATGAGGCAATCAAGGCTGGTGTAAATGTGAAGGGATACTTTGCATGGTCTTTGTTGGACAATTTTGAATGGCACAAGGGTTATACTGTGAGATTTGGAATGACCTTTGTAGATTATAAAAATGGTTTGAAAAGATATCAAAAGCTCTCAGGATTCAAATCAAATATTGTGAATTGCACAGAAAGTGTTGAAGTTGAACCTATTCTTGACATTGCTTCATTGAATCGGAATAGTTTCCCTCAAGGCTTTATCTTTGGGGCTGGTTCATCTTCCTACCAGTTTGAAGGTGCAGCAACAGAAGGTGGTAGAACACCAAGTATATGGGACACCTTCACTCATAGATATCCTGAAAAGATCAAGGATGGAAGCAATGGAGATGTAGCCATTGACACATATCATCAATACAAGGAAGATGTTAAGATCATGAAAGATATGAACTTAGATTCATACAGATTTTCCATATCCTGGTCTAGAATATTGCCAAATGGAAAGCTTAGTGGTGGTGTCAATCAAGAAGGAATTAACTATTACAACAATCTCATCAACGAGCTACTAGCTAATGGTATACAACCATTAGTGACTCTTTTCCATTGGGATCTCCCTCAAACTTTAGAAGAAGAGTATGGTGGCTTCTTAAGCCCTCTTATAGTAAAAGATTTTCAAGACTATGCGGAACTTTGTTTCAAGGAATTTGGTGATAGAGTCAAGTATTGGGTTACTTTGAATGAGCCATGGAGCTACAGCCAAAATGGCTATGCAAATGGGCGAATGGCACCGGGTGATTCTGCGATCGAGCCCTATTTGGTTACGCATTACCAACTTCTTGCACATGCCGCTGTTGTTGATGTGTACAAGAAAAAGTACAAGAAATCTCAAAAGGGCGTAATAGGCATAACCTTAGTAGCGAATTGGTATCTTCCACTCTCAAATTCCAAATCCGACCAAAAAGCAGCAGAAAGAGCAATTGATTTTATGTTTATGGATCCACTAACATCAGGAGATTATCCTAAAAGCATGAGAGCCCTCGTTGGTGCTAGGTTACCAAAATTCAATACAAAGCAAACTAAACTACTCATTGGTTCATTTGATTTTATTGGTCTAAACTATTACTCTTCAACTTATGCCTCTGATGCACCATTGTTAACCAATGCTAGACCTATTGAGCGCAACGGGAAACCTATTGGTATCAAGATTGCTTCCGAATGGTTGTACGTTTATCCAAGAGGAATTCGTGATCTTTTGTTATACACCAAAGAAAAGTACAATAATCCTTCTATTTACATCACAGAAAATGGTATAAATGAATACGACGATTCTACATTATCAGTTGAGGAATCACTCTTGGATACTTTTCGAATTGATTACCATTACCGTCATCTATTTTATCTTCGATCTGCCATTAGGGAAGGTGTGAATGTCAAGGGTTATTATGTATGGTCATTGTTCGACAATTTTGAATGGTCATCCGGTTATAGCGTCAGATTTGGAATGACCTTTGTTGATTATAAGAATGGCTTGAAAAGATACCAGAAGTTGTCTGCTTTGTGGTTTAAGAATTTTCTCAAAAAAGAAACTAAGCTTATGTTTCTAATGAGAAAG

Protein sequence

>Msa0685060

MRYFLFFLFLSLVSTFIITLTEGQEIINTEPLQIGAASEGGRGPSIWDTFTHRYPQKISDGNNGDVAVDSYHRYKEDVGIMKDMNLDAYRFSISWSRILPNGKLSGGINQEGIDYYNNLIDKLVANGLQPFVTLFHWDLPQTLEDEYGGFLSPLIIKDFQDYAELCFKTFGDRVKHWITLNEPWTYSQDGYANGRCSSWLNPNCTGGDSGTEPYLVAHYQLLAHAAVVNLYKTKYQVSQKGVIGITLVINYFVPLSDNKLDIKAAERATDFMFMDPLSNGDYPKNMRALVRSRLPKFTKEQSRLVSGSFDFIGINYYSSCYASDAPQLSNGKPSYLTDSLSRFSFQRDGKTIGLNVASNWLYVYPRAIRDFLIQVKEKYNNPLIYITENGINEYDDPSLSLEESLMDTYRVDYHYRHLFNLNEAIKAGVNVKGYFAWSLLDNFEWHKGYTVRFGMTFVDYKNGLKRYQKLSGFKSNIVNCTESVEVEPILDIASLNRNSFPQGFIFGAGSSSYQFEGAATEGGRTPSIWDTFTHRYPEKIKDGSNGDVAIDTYHQYKEDVKIMKDMNLDSYRFSISWSRILPNGKLSGGVNQEGINYYNNLINELLANGIQPLVTLFHWDLPQTLEEEYGGFLSPLIVKDFQDYAELCFKEFGDRVKYWVTLNEPWSYSQNGYANGRMAPGDSAIEPYLVTHYQLLAHAAVVDVYKKKYKKSQKGVIGITLVANWYLPLSNSKSDQKAAERAIDFMFMDPLTSGDYPKSMRALVGARLPKFNTKQTKLLIGSFDFIGLNYYSSTYASDAPLLTNARPIERNGKPIGIKIASEWLYVYPRGIRDLLLYTKEKYNNPSIYITENGINEYDDSTLSVEESLLDTFRIDYHYRHLFYLRSAIREGVNVKGYYVWSLFDNFEWSSGYSVRFGMTFVDYKNGLKRYQKLSALWFKNFLKKETKLMFLMRK