AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0907710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0907710 MtrunA17_Chr6g0456401 97.358 492 10 1 1 492 1 489 0.0 998
Msa0907710 MtrunA17_Chr6g0456391 97.154 492 11 1 1 492 1 489 0.0 996
Msa0907710 MtrunA17_Chr6g0456381 96.748 492 13 1 1 492 1 489 0.0 993
Msa0907710 MtrunA17_Chr7g0221391 72.672 494 130 3 1 492 1 491 0.0 752
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0907710 AT3G30775.1 58.434 498 200 5 1 491 1 498 0.0 570
Msa0907710 AT3G30775.2 58.434 498 200 5 1 491 1 498 0.0 570
Msa0907710 AT5G38710.1 58.442 462 179 4 31 489 24 475 0.0 563
Msa0907710 AT5G38710.2 56.315 483 191 7 1 480 1 466 0.0 551

Find 87 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCTTCTTGTGGTGTTAA+TGG 0.140964 6_2:+6475882 None:intergenic
GGTTGTGATCGTAATCTTAA+AGG 0.228265 6_2:-6477988 Msa0907710:CDS
TTACGTGGCATGCTTGTTTA+TGG 0.238176 6_2:-6478036 Msa0907710:CDS
TCTTGTGGTGTTAATGGTTC+TGG 0.257780 6_2:+6475888 None:intergenic
GACAAAGTTGTTGTAATCTT+TGG 0.266260 6_2:+6475841 None:intergenic
CTGTCGTGGACGTTGGAATA+TGG 0.273143 6_2:-6478203 Msa0907710:CDS
AGTACATTGGCTGAGTCTTT+TGG 0.274273 6_2:-6475567 Msa0907710:CDS
GGACTTGATTCTGAGAAAAT+TGG 0.279493 6_2:+6475933 None:intergenic
GAAACTCTCGACAACACTTT+AGG 0.315281 6_2:+6478579 None:intergenic
GAAGGATGGGAGGAGTTTAA+TGG 0.315987 6_2:+6478408 None:intergenic
GATGATAATCCTATTGTGTT+TGG 0.331772 6_2:-6475711 Msa0907710:CDS
GCAGCAAAAGCATATGAAAT+TGG 0.349585 6_2:-6474887 Msa0907710:CDS
TTTCTTCAGCTCTTCTCAAT+AGG 0.352369 6_2:+6474726 None:intergenic
TGAAGAAAATAGAGGCCTTT+TGG 0.353136 6_2:-6474711 Msa0907710:CDS
TGAATTGTTCCAAACACAAT+AGG 0.356564 6_2:+6475702 None:intergenic
ATGGGATTTAAGTTGGTTAG+AGG 0.360764 6_2:-6475609 Msa0907710:CDS
TTGCTTGAGAAGTTTGCTAA+TGG 0.363959 6_2:-6475477 Msa0907710:CDS
GGTTGTTGGTGTGACGGTTT+TGG 0.369072 6_2:+6478327 None:intergenic
GTTAGCAAGTATATGCCATT+TGG 0.380807 6_2:-6474773 Msa0907710:CDS
GTTGTGATCGTAATCTTAAA+GGG 0.388070 6_2:-6477987 Msa0907710:CDS
TCATTTGGTTTGAGCAATGC+AGG 0.402184 6_2:-6474803 Msa0907710:CDS
TTGCTGCTGGAAAGAGTATA+AGG 0.405411 6_2:-6478077 Msa0907710:CDS
ATAGTCTCTCAGCGTCGTTT+AGG 0.405775 6_2:+6478292 None:intergenic
GAGAAGTTTGCTAATGGAAA+AGG 0.409585 6_2:-6475471 Msa0907710:CDS
ATGTCAGATGCACTTTCATT+TGG 0.412207 6_2:-6474818 Msa0907710:CDS
TTCCATGGTAAATTGAATGA+AGG 0.441489 6_2:+6475969 None:intergenic
GCAATCAAAATTGTTACAAA+CGG 0.447102 6_2:-6478175 Msa0907710:CDS
TCTTCAATAGTATCATGAAT+TGG 0.450449 6_2:+6475534 None:intergenic
TGTCGTGGACGTTGGAATAT+GGG 0.452589 6_2:-6478202 Msa0907710:CDS
AATTAGAAACTTACAGAAGA+TGG 0.452786 6_2:+6477928 None:intergenic
AATTCCTATGGGATTTAAGT+TGG 0.453707 6_2:-6475616 Msa0907710:CDS
CAATCAAAATTGTTACAAAC+GGG 0.455063 6_2:-6478174 Msa0907710:CDS
GCTACACACAACATTGAATC+AGG 0.457514 6_2:-6475435 Msa0907710:intron
GGTCGAGATAAGACGGTTGT+TGG 0.459521 6_2:+6478313 None:intergenic
GTTGTGCAAATTCAAGTTTG+TGG 0.466588 6_2:+6474849 None:intergenic
CGGCAGCGGTGGCTGAAGGA+TGG 0.474169 6_2:+6478394 None:intergenic
GGAGAAGATGCTATTGCTGC+TGG 0.477420 6_2:-6478090 Msa0907710:CDS
TGAAAATCACTTTCTTCTTG+TGG 0.479035 6_2:+6475873 None:intergenic
ACCATCTCAACTGGTCCAAA+TGG 0.482748 6_2:+6474758 None:intergenic
CTTGAATTTGCACAACTATG+TGG 0.482939 6_2:-6474842 Msa0907710:CDS
ATAAGGTCTGTTAATGAAGC+TGG 0.484228 6_2:-6478060 Msa0907710:CDS
AACTTATTTGAAAGATGCTA+AGG 0.486569 6_2:-6475679 Msa0907710:CDS
AAAGCATATGAAATTGGAAT+GGG 0.486854 6_2:-6474881 Msa0907710:CDS
GGTAGAGAGTCTTGTTTCCA+TGG 0.489711 6_2:+6475954 None:intergenic
GGCAGCGGTGGCTGAAGGAT+GGG 0.493133 6_2:+6478395 None:intergenic
TGTACAGAAAAGAGCTTGGA+AGG 0.493267 6_2:-6474555 Msa0907710:intron
TAAGGCATAACCATCTCAAC+TGG 0.497185 6_2:+6474749 None:intergenic
AATCTTGAAAGATGCAGTTA+TGG 0.507538 6_2:-6478151 Msa0907710:CDS
TGTTCAGCATCAACCAATAG+TGG 0.510458 6_2:+6475795 None:intergenic
TGAAGCAAACATGCCACTAT+TGG 0.511802 6_2:-6475808 Msa0907710:CDS
AAGGGAGGCGACGGCAGCGG+TGG 0.516875 6_2:+6478383 None:intergenic
ATTCTTTCTAGTAATGCCAT+TGG 0.522940 6_2:+6476023 None:intergenic
GAGAAGGGAGGCGACGGCAG+CGG 0.523270 6_2:+6478380 None:intergenic
AGAAGAGCTGAAGAAAATAG+AGG 0.524857 6_2:-6474719 Msa0907710:CDS
CATTTGGTTTGAGCAATGCA+GGG 0.525718 6_2:-6474802 Msa0907710:CDS
TCAGCTCTTCTCAATAGGTA+AGG 0.526405 6_2:+6474731 None:intergenic
CAAATCCAGAAGCAGCCAAA+AGG 0.529777 6_2:+6474696 None:intergenic
GCCATTTGGACCAGTTGAGA+TGG 0.538971 6_2:-6474759 Msa0907710:CDS
AGGTTGTTCTCTTTCGAGAA+GGG 0.540968 6_2:+6478365 None:intergenic
TCCATGGTAAATTGAATGAA+GGG 0.543779 6_2:+6475970 None:intergenic
GCGACGGCAGCGGTGGCTGA+AGG 0.544078 6_2:+6478390 None:intergenic
AAAAGCATATGAAATTGGAA+TGG 0.545661 6_2:-6474882 Msa0907710:CDS
TATGTGAAGTAATCAATAGC+TGG 0.545894 6_2:+6475759 None:intergenic
GAATAAGTGATCTTCTAAGA+TGG 0.547341 6_2:-6476004 Msa0907710:CDS
ACCCTTCATTCAATTTACCA+TGG 0.548501 6_2:-6475971 Msa0907710:CDS
GATTTGATAGACAACTCATA+AGG 0.552477 6_2:-6474679 Msa0907710:intron
TATCAGCGTGGACGTTGGAA+CGG 0.555619 6_2:+6478263 None:intergenic
CGTTGCATGCAAAACGGCTG+AGG 0.555771 6_2:+6478236 None:intergenic
TATAGCCGTTGCATGCAAAA+CGG 0.559507 6_2:+6478230 None:intergenic
AAGGTTGTTCTCTTTCGAGA+AGG 0.560901 6_2:+6478364 None:intergenic
CATATTCCAACGTCCACGAC+AGG 0.571109 6_2:+6478204 None:intergenic
TAAGACGGTTGTTGGTGTGA+CGG 0.576612 6_2:+6478321 None:intergenic
TCTTTCGAGAAGGGAGGCGA+CGG 0.578179 6_2:+6478374 None:intergenic
GTTAATGAAGCTGGCTTACG+TGG 0.581537 6_2:-6478051 Msa0907710:CDS
AATCACTGCAATATGTCCAA+TGG 0.585286 6_2:-6476039 Msa0907710:CDS
ATAGGACCTGTCGTGGACGT+TGG 0.590338 6_2:-6478210 Msa0907710:CDS
AGCGGTGGCTGAAGGATGGG+AGG 0.592747 6_2:+6478398 None:intergenic
CTAACCAACTTAAATCCCAT+AGG 0.606330 6_2:+6475612 None:intergenic
TTGTTCTCTTTCGAGAAGGG+AGG 0.606843 6_2:+6478368 None:intergenic
TCGTTTAGGTCGAGATAAGA+CGG 0.607879 6_2:+6478306 None:intergenic
GATCTTATCAGCGTGGACGT+TGG 0.612929 6_2:+6478258 None:intergenic
GAAGATGCACATGATAATGA+TGG 0.618481 6_2:-6478009 Msa0907710:CDS
AAGTGATTTGCTAACATCAA+CGG 0.622647 6_2:+6477954 None:intergenic
TATGTCTACAGAAAGTACAT+TGG 0.622655 6_2:-6475580 Msa0907710:CDS
TAGAAACTTACAGAAGATGG+AGG 0.662988 6_2:+6477931 None:intergenic
ACAGAAAAGAGCTTGGAAGG+AGG 0.680297 6_2:-6474552 Msa0907710:intron
GGCTGAGGATCTTATCAGCG+TGG 0.691125 6_2:+6478251 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTATTATTATTATTA+TGG + chr6_2:6475477-6475496 None:intergenic 0.0%
!!! TAATAATAAATTAAATATTT+TGG - chr6_2:6476205-6476224 Msa0907710:intron 0.0%
!!! TATTTTTTTTAAAGCAAAAT+TGG - chr6_2:6475246-6475265 Msa0907710:intron 10.0%
!!! TTATATTTTATACATAATGT+TGG - chr6_2:6476400-6476419 Msa0907710:intron 10.0%
!!! ACATTTTCTTAAAATATTAT+CGG + chr6_2:6477638-6477657 None:intergenic 10.0%
!!! ACATTTTCTTAAAATATTAT+CGG + chr6_2:6477638-6477657 None:intergenic 10.0%
!!! TGAAATGTGTTTTAATATAA+AGG - chr6_2:6475432-6475451 Msa0907710:intron 15.0%
!! TGTCTCATATTATATATTAT+TGG - chr6_2:6476005-6476024 Msa0907710:CDS 15.0%
!!! TTGTACATTTTAATATGAAT+TGG + chr6_2:6476690-6476709 None:intergenic 15.0%
!!! ATTGATTTTTTTTATGTGAT+AGG - chr6_2:6476841-6476860 Msa0907710:intron 15.0%
!! TGTCTCAAAAATAATTAAAA+AGG + chr6_2:6478294-6478313 None:intergenic 15.0%
!!! TGAAATGAATTTTGAATTTA+TGG - chr6_2:6478533-6478552 Msa0907710:five_prime_UTR 15.0%
!!! CAAATTTTCTTGTTTTTGAA+TGG - chr6_2:6474432-6474451 Msa0907710:three_prime_UTR 20.0%
!!! AGTATTAACTTTTATGATCA+TGG - chr6_2:6475037-6475056 Msa0907710:intron 20.0%
!!! TGTTTTTGTTTAAAGAAAAG+AGG - chr6_2:6475105-6475124 Msa0907710:intron 20.0%
!! TCTTTAAATAATGATTGAAG+AGG - chr6_2:6475374-6475393 Msa0907710:intron 20.0%
!! CATTTCACACAAAAAATATT+GGG + chr6_2:6475419-6475438 None:intergenic 20.0%
!! ACATTTCACACAAAAAATAT+TGG + chr6_2:6475420-6475439 None:intergenic 20.0%
!! TATTATTATGGTGTAAATGA+GGG + chr6_2:6475465-6475484 None:intergenic 20.0%
!! TTATTATTATGGTGTAAATG+AGG + chr6_2:6475466-6475485 None:intergenic 20.0%
!!! CACTTTTCTAATTTTTTATG+TGG - chr6_2:6475525-6475544 Msa0907710:CDS 20.0%
!! TCATTATTTCCTTAACTATT+GGG + chr6_2:6475557-6475576 None:intergenic 20.0%
!! ATCATTATTTCCTTAACTAT+TGG + chr6_2:6475558-6475577 None:intergenic 20.0%
!! TAATAATACAAAGTAGTTGA+TGG + chr6_2:6475669-6475688 None:intergenic 20.0%
!!! TTTTTAAGTTGCAAAAATCT+TGG - chr6_2:6475957-6475976 Msa0907710:CDS 20.0%
!!! AAATTTGAGTTTGGTATTTT+TGG - chr6_2:6476098-6476117 Msa0907710:intron 20.0%
!!! AGTGTTTAGAAATTAGATTT+TGG - chr6_2:6476482-6476501 Msa0907710:intron 20.0%
!!! GAAATTAGATTTTGGTATTT+TGG - chr6_2:6476490-6476509 Msa0907710:intron 20.0%
!! AATAAAACTCTAGTAAGAAA+TGG + chr6_2:6476552-6476571 None:intergenic 20.0%
!!! TCAAAGTGTTTATACTAAAT+TGG - chr6_2:6476582-6476601 Msa0907710:intron 20.0%
!! ATTAGATAGTTACATTCATT+AGG - chr6_2:6477515-6477534 Msa0907710:intron 20.0%
!! TTAGATAGTTACATTCATTA+GGG - chr6_2:6477516-6477535 Msa0907710:intron 20.0%
!! ATAAATGTAACCACATATAT+CGG - chr6_2:6477860-6477879 Msa0907710:intron 20.0%
!! AGATACATTAATTGAAATCT+TGG + chr6_2:6477974-6477993 None:intergenic 20.0%
!!! TTGAATTTTTTTTGTTGTGT+AGG - chr6_2:6478002-6478021 Msa0907710:CDS 20.0%
!!! TGAATTTTTTTTGTTGTGTA+GGG - chr6_2:6478003-6478022 Msa0907710:CDS 20.0%
!!! TTTTTCTCATACTGATTTTT+CGG - chr6_2:6478334-6478353 Msa0907710:CDS 20.0%
!!! TGAATTTATGGTATTTTTGT+TGG - chr6_2:6478545-6478564 Msa0907710:five_prime_UTR 20.0%
! GCAATCAAAATTGTTACAAA+CGG - chr6_2:6474747-6474766 Msa0907710:CDS 25.0%
! CAATCAAAATTGTTACAAAC+GGG - chr6_2:6474748-6474767 Msa0907710:CDS 25.0%
!! TTTTATGAACATTTTTGTGC+TGG - chr6_2:6474811-6474830 Msa0907710:CDS 25.0%
! AATTAGAAACTTACAGAAGA+TGG + chr6_2:6474997-6475016 None:intergenic 25.0%
!! TGTTTAAAGAAAAGAGGTTT+TGG - chr6_2:6475111-6475130 Msa0907710:intron 25.0%
!!! AGGTTTTGGTCAAATTAATT+TGG - chr6_2:6475125-6475144 Msa0907710:intron 25.0%
! CATTATTTCCTTAACTATTG+GGG + chr6_2:6475556-6475575 None:intergenic 25.0%
! TGTATGTCTTGAAAAACATA+AGG - chr6_2:6475583-6475602 Msa0907710:CDS 25.0%
!! AGTGTTTAGAAATTTGAGTT+TGG - chr6_2:6476089-6476108 Msa0907710:intron 25.0%
!!! AGTTTGGTATTTTTGGATAA+GGG - chr6_2:6476105-6476124 Msa0907710:intron 25.0%
! ATAAGGGTTAATCAGTAAAT+TGG - chr6_2:6476121-6476140 Msa0907710:intron 25.0%
! ACCATTTCTAATGTAATTAG+AGG - chr6_2:6476150-6476169 Msa0907710:intron 25.0%
! ACCTCTAATTACATTAGAAA+TGG + chr6_2:6476154-6476173 None:intergenic 25.0%
!!! TGTTACTGTTTTAGACAAAA+TGG - chr6_2:6476302-6476321 Msa0907710:intron 25.0%
! AATAAAGCTCATGTTAGAAA+TGG + chr6_2:6476352-6476371 None:intergenic 25.0%
!!! ATTTTGGTATTTTGGACAAA+AGG - chr6_2:6476498-6476517 Msa0907710:intron 25.0%
!!! TTTTGGTATTTTGGACAAAA+GGG - chr6_2:6476499-6476518 Msa0907710:intron 25.0%
! GTGTCAAATGCAAAAAATTA+TGG + chr6_2:6476624-6476643 None:intergenic 25.0%
!!! TTTTTTGTAGTGTGGTATAA+TGG + chr6_2:6477013-6477032 None:intergenic 25.0%
! AACTTATTTGAAAGATGCTA+AGG - chr6_2:6477243-6477262 Msa0907710:intron 25.0%
! TGAAAAAATTGGAATTCCTA+TGG - chr6_2:6477294-6477313 Msa0907710:intron 25.0%
! GAAAAAATTGGAATTCCTAT+GGG - chr6_2:6477295-6477314 Msa0907710:intron 25.0%
! TCTTCAATAGTATCATGAAT+TGG + chr6_2:6477391-6477410 None:intergenic 25.0%
! GATTGACACTTCATATTAAT+GGG + chr6_2:6477757-6477776 None:intergenic 25.0%
! AGATTGACACTTCATATTAA+TGG + chr6_2:6477758-6477777 None:intergenic 25.0%
! GCACATATATTTCAGATTTA+AGG + chr6_2:6477922-6477941 None:intergenic 25.0%
!! AAAAGCATATGAAATTGGAA+TGG - chr6_2:6478040-6478059 Msa0907710:CDS 25.0%
! AAAGCATATGAAATTGGAAT+GGG - chr6_2:6478041-6478060 Msa0907710:CDS 25.0%
!!! TTTGAGTTTTGTGCTTATTA+TGG - chr6_2:6478583-6478602 Msa0907710:five_prime_UTR 25.0%
!!! TTGAGTTTTGTGCTTATTAT+GGG - chr6_2:6478584-6478603 Msa0907710:five_prime_UTR 25.0%
!!! GGTTTTTTTACACGTGATTT+TGG + chr6_2:6474325-6474344 None:intergenic 30.0%
!! GATTCTTGATGATCTTTTGT+GGG + chr6_2:6474471-6474490 None:intergenic 30.0%
!! AGATTCTTGATGATCTTTTG+TGG + chr6_2:6474472-6474491 None:intergenic 30.0%
AATCTTGAAAGATGCAGTTA+TGG - chr6_2:6474771-6474790 Msa0907710:CDS 30.0%
GTTGTGATCGTAATCTTAAA+GGG - chr6_2:6474935-6474954 Msa0907710:intron 30.0%
!! AAGTGATTTGCTAACATCAA+CGG + chr6_2:6474971-6474990 None:intergenic 30.0%
GCACATGTTAAAACAAGTAT+AGG - chr6_2:6475605-6475624 Msa0907710:CDS 30.0%
!! TTTCTATTTCTGAAAGGGAT+TGG + chr6_2:6475645-6475664 None:intergenic 30.0%
!! ATGGCTTTCTATTTCTGAAA+GGG + chr6_2:6475650-6475669 None:intergenic 30.0%
!!! GAGTTTGGTATTTTTGGATA+AGG - chr6_2:6476104-6476123 Msa0907710:intron 30.0%
TGGCATTCTGTCTTAAAAAT+TGG - chr6_2:6476258-6476277 Msa0907710:intron 30.0%
GTTGGCATTGTAACAAAAAT+TGG - chr6_2:6476454-6476473 Msa0907710:intron 30.0%
! ATTCTTTCTAGTAATGCCAT+TGG + chr6_2:6476902-6476921 None:intergenic 30.0%
! GAATAAGTGATCTTCTAAGA+TGG - chr6_2:6476918-6476937 Msa0907710:intron 30.0%
TCCATGGTAAATTGAATGAA+GGG + chr6_2:6476955-6476974 None:intergenic 30.0%
TTCCATGGTAAATTGAATGA+AGG + chr6_2:6476956-6476975 None:intergenic 30.0%
TGAAAATCACTTTCTTCTTG+TGG + chr6_2:6477052-6477071 None:intergenic 30.0%
GACAAAGTTGTTGTAATCTT+TGG + chr6_2:6477084-6477103 None:intergenic 30.0%
TATGTGAAGTAATCAATAGC+TGG + chr6_2:6477166-6477185 None:intergenic 30.0%
GATGATAATCCTATTGTGTT+TGG - chr6_2:6477211-6477230 Msa0907710:intron 30.0%
TGAATTGTTCCAAACACAAT+AGG + chr6_2:6477223-6477242 None:intergenic 30.0%
AATTCCTATGGGATTTAAGT+TGG - chr6_2:6477306-6477325 Msa0907710:intron 30.0%
! TATGTCTACAGAAAGTACAT+TGG - chr6_2:6477342-6477361 Msa0907710:intron 30.0%
TCAGATGTTCATATATGTGT+CGG + chr6_2:6477602-6477621 None:intergenic 30.0%
!! TTTTTGTTGTGTAGGGAAAT+TGG - chr6_2:6478010-6478029 Msa0907710:CDS 30.0%
GATTTGATAGACAACTCATA+AGG - chr6_2:6478243-6478262 Msa0907710:CDS 30.0%
! ATTTTGTACAGAAAAGAGCT+TGG - chr6_2:6478363-6478382 Msa0907710:CDS 30.0%
!!! GTTTTGTGGTGGTTTTGAAA+CGG + chr6_2:6474495-6474514 None:intergenic 35.0%
ATAAGGTCTGTTAATGAAGC+TGG - chr6_2:6474862-6474881 Msa0907710:CDS 35.0%
! GAAGATGCACATGATAATGA+TGG - chr6_2:6474913-6474932 Msa0907710:intron 35.0%
GGTTGTGATCGTAATCTTAA+AGG - chr6_2:6474934-6474953 Msa0907710:intron 35.0%
TAGAAACTTACAGAAGATGG+AGG + chr6_2:6474994-6475013 None:intergenic 35.0%
!! GATGGCTTTCTATTTCTGAA+AGG + chr6_2:6475651-6475670 None:intergenic 35.0%
! TTAAACTAGTTTGTGCCTCA+TGG - chr6_2:6475730-6475749 Msa0907710:CDS 35.0%
!! AACGTGTGTGTTTTATTGTG+AGG - chr6_2:6475790-6475809 Msa0907710:CDS 35.0%
GTGATGAGTATGAATTGAGT+TGG - chr6_2:6475841-6475860 Msa0907710:CDS 35.0%
GACATTGAGTCATATATCGT+TGG - chr6_2:6476061-6476080 Msa0907710:CDS 35.0%
ACATTGTACTTCAAGTAGGT+GGG + chr6_2:6476235-6476254 None:intergenic 35.0%
AACCACATTGTACTTCAAGT+AGG + chr6_2:6476239-6476258 None:intergenic 35.0%
TACTTGAAGTACAATGTGGT+TGG - chr6_2:6476238-6476257 Msa0907710:intron 35.0%
AACAACATGTTCGTACTCAT+TGG - chr6_2:6476653-6476672 Msa0907710:intron 35.0%
TCAAAAATCGAATTGCGTGA+AGG + chr6_2:6476789-6476808 None:intergenic 35.0%
!! ACGCAATTCGATTTTTGAAG+TGG - chr6_2:6476791-6476810 Msa0907710:intron 35.0%
AATCACTGCAATATGTCCAA+TGG - chr6_2:6476883-6476902 Msa0907710:intron 35.0%
ACCCTTCATTCAATTTACCA+TGG - chr6_2:6476951-6476970 Msa0907710:intron 35.0%
! GGACTTGATTCTGAGAAAAT+TGG + chr6_2:6476992-6477011 None:intergenic 35.0%
!!! GTTCTGGTTTTTTTGTAGTG+TGG + chr6_2:6477021-6477040 None:intergenic 35.0%
! CTTTCTTCTTGTGGTGTTAA+TGG + chr6_2:6477043-6477062 None:intergenic 35.0%
ACACAAGCTGCTGAAAAAAT+TGG - chr6_2:6477283-6477302 Msa0907710:intron 35.0%
CTAACCAACTTAAATCCCAT+AGG + chr6_2:6477313-6477332 None:intergenic 35.0%
!! ATGGGATTTAAGTTGGTTAG+AGG - chr6_2:6477313-6477332 Msa0907710:intron 35.0%
!! TTGCTTGAGAAGTTTGCTAA+TGG - chr6_2:6477445-6477464 Msa0907710:intron 35.0%
!! GAGAAGTTTGCTAATGGAAA+AGG - chr6_2:6477451-6477470 Msa0907710:intron 35.0%
AAGTCTGATTCCGATATATG+TGG + chr6_2:6477873-6477892 None:intergenic 35.0%
! GCAGCAAAAGCATATGAAAT+TGG - chr6_2:6478035-6478054 Msa0907710:CDS 35.0%
! GTTGTGCAAATTCAAGTTTG+TGG + chr6_2:6478076-6478095 None:intergenic 35.0%
CTTGAATTTGCACAACTATG+TGG - chr6_2:6478080-6478099 Msa0907710:CDS 35.0%
ATGTCAGATGCACTTTCATT+TGG - chr6_2:6478104-6478123 Msa0907710:CDS 35.0%
GTTAGCAAGTATATGCCATT+TGG - chr6_2:6478149-6478168 Msa0907710:CDS 35.0%
TTTCTTCAGCTCTTCTCAAT+AGG + chr6_2:6478199-6478218 None:intergenic 35.0%
AGAAGAGCTGAAGAAAATAG+AGG - chr6_2:6478203-6478222 Msa0907710:CDS 35.0%
! TGAAGAAAATAGAGGCCTTT+TGG - chr6_2:6478211-6478230 Msa0907710:CDS 35.0%
GAAACTCTCGACAACACTTT+AGG + chr6_2:6474346-6474365 None:intergenic 40.0%
! TTTTTGAATGGCAACTCGTG+TGG - chr6_2:6474444-6474463 Msa0907710:three_prime_UTR 40.0%
!!! GGAGTTTAATGGTTTTGTGG+TGG + chr6_2:6474506-6474525 None:intergenic 40.0%
!! GGAGGAGTTTAATGGTTTTG+TGG + chr6_2:6474509-6474528 None:intergenic 40.0%
AGGTTGTTCTCTTTCGAGAA+GGG + chr6_2:6474560-6474579 None:intergenic 40.0%
AAGGTTGTTCTCTTTCGAGA+AGG + chr6_2:6474561-6474580 None:intergenic 40.0%
TCGTTTAGGTCGAGATAAGA+CGG + chr6_2:6474619-6474638 None:intergenic 40.0%
TATAGCCGTTGCATGCAAAA+CGG + chr6_2:6474695-6474714 None:intergenic 40.0%
! TTGCTGCTGGAAAGAGTATA+AGG - chr6_2:6474845-6474864 Msa0907710:CDS 40.0%
TTACGTGGCATGCTTGTTTA+TGG - chr6_2:6474886-6474905 Msa0907710:CDS 40.0%
TTTGGTCGTATAATGTAGCG+TGG - chr6_2:6475143-6475162 Msa0907710:intron 40.0%
CGTATAATGTAGCGTGGAAA+TGG - chr6_2:6475149-6475168 Msa0907710:intron 40.0%
! ATGGTTTAGTTGTGGGTTGT+GGG - chr6_2:6475749-6475768 Msa0907710:CDS 40.0%
AGAAGTAGCATGACTTGAAC+TGG + chr6_2:6475920-6475939 None:intergenic 40.0%
TCTTGGAATCATGTGACAGA+CGG - chr6_2:6475974-6475993 Msa0907710:CDS 40.0%
ACATTGTCCTTAAGCTAGGT+GGG + chr6_2:6476032-6476051 None:intergenic 40.0%
AACCACATTGTCCTTAAGCT+AGG + chr6_2:6476036-6476055 None:intergenic 40.0%
TAGCTTAAGGACAATGTGGT+TGG - chr6_2:6476035-6476054 Msa0907710:CDS 40.0%
ATTGTACTTCAAGTAGGTGG+GGG + chr6_2:6476233-6476252 None:intergenic 40.0%
CATTGTACTTCAAGTAGGTG+GGG + chr6_2:6476234-6476253 None:intergenic 40.0%
CACATTGTACTTCAAGTAGG+TGG + chr6_2:6476236-6476255 None:intergenic 40.0%
CACCTACTTGAAGTACAATG+TGG - chr6_2:6476234-6476253 Msa0907710:intron 40.0%
GGGTTCATTAGTACGTAGTT+TGG - chr6_2:6476519-6476538 Msa0907710:intron 40.0%
TGTTCGTACTCATTGGATCA+AGG - chr6_2:6476660-6476679 Msa0907710:intron 40.0%
AAAATCGAATTGCGTGAAGG+TGG + chr6_2:6476786-6476805 None:intergenic 40.0%
! TCTTGTGGTGTTAATGGTTC+TGG + chr6_2:6477037-6477056 None:intergenic 40.0%
TGAAGCAAACATGCCACTAT+TGG - chr6_2:6477114-6477133 Msa0907710:intron 40.0%
TGTTCAGCATCAACCAATAG+TGG + chr6_2:6477130-6477149 None:intergenic 40.0%
!! AGTACATTGGCTGAGTCTTT+TGG - chr6_2:6477355-6477374 Msa0907710:intron 40.0%
GCTACACACAACATTGAATC+AGG - chr6_2:6477487-6477506 Msa0907710:intron 40.0%
! TTTCAGATTTAAGGCGTGTC+TGG + chr6_2:6477913-6477932 None:intergenic 40.0%
!! TCATTTGGTTTGAGCAATGC+AGG - chr6_2:6478119-6478138 Msa0907710:CDS 40.0%
!! CATTTGGTTTGAGCAATGCA+GGG - chr6_2:6478120-6478139 Msa0907710:CDS 40.0%
TAAGGCATAACCATCTCAAC+TGG + chr6_2:6478176-6478195 None:intergenic 40.0%
TCAGCTCTTCTCAATAGGTA+AGG + chr6_2:6478194-6478213 None:intergenic 40.0%
TGTACAGAAAAGAGCTTGGA+AGG - chr6_2:6478367-6478386 Msa0907710:CDS 40.0%
!! TCACTTTTATACTGTAGGGG+CGG + chr6_2:6478616-6478635 None:intergenic 40.0%
GAAGGATGGGAGGAGTTTAA+TGG + chr6_2:6474517-6474536 None:intergenic 45.0%
TTGTTCTCTTTCGAGAAGGG+AGG + chr6_2:6474557-6474576 None:intergenic 45.0%
TAAGACGGTTGTTGGTGTGA+CGG + chr6_2:6474604-6474623 None:intergenic 45.0%
ATAGTCTCTCAGCGTCGTTT+AGG + chr6_2:6474633-6474652 None:intergenic 45.0%
! GTTTTGCATGCAACGGCTAT+AGG - chr6_2:6474694-6474713 Msa0907710:CDS 45.0%
TGTCGTGGACGTTGGAATAT+GGG - chr6_2:6474720-6474739 Msa0907710:CDS 45.0%
! GTTAATGAAGCTGGCTTACG+TGG - chr6_2:6474871-6474890 Msa0907710:CDS 45.0%
TGTGCCTCATGGTTTAGTTG+TGG - chr6_2:6475741-6475760 Msa0907710:CDS 45.0%
GTGCCTCATGGTTTAGTTGT+GGG - chr6_2:6475742-6475761 Msa0907710:CDS 45.0%
CAACCCACAACTAAACCATG+AGG + chr6_2:6475748-6475767 None:intergenic 45.0%
! CATGGTTTAGTTGTGGGTTG+TGG - chr6_2:6475748-6475767 Msa0907710:CDS 45.0%
! TGGTTTAGTTGTGGGTTGTG+GGG - chr6_2:6475750-6475769 Msa0907710:CDS 45.0%
TATTGGTCCCACCTAGCTTA+AGG - chr6_2:6476022-6476041 Msa0907710:CDS 45.0%
CACATTGTCCTTAAGCTAGG+TGG + chr6_2:6476033-6476052 None:intergenic 45.0%
CACCTAGCTTAAGGACAATG+TGG - chr6_2:6476031-6476050 Msa0907710:CDS 45.0%
TTGTACTTCAAGTAGGTGGG+GGG + chr6_2:6476232-6476251 None:intergenic 45.0%
ACATTGTGCATCAGCTAGGT+GGG + chr6_2:6476433-6476452 None:intergenic 45.0%
AACCACATTGTGCATCAGCT+AGG + chr6_2:6476437-6476456 None:intergenic 45.0%
TAGCTGATGCACAATGTGGT+TGG - chr6_2:6476436-6476455 Msa0907710:intron 45.0%
GTCAGCACATTCATGACAGT+TGG + chr6_2:6476743-6476762 None:intergenic 45.0%
!! GGTAGAGAGTCTTGTTTCCA+TGG + chr6_2:6476971-6476990 None:intergenic 45.0%
! TGGCTGAGTCTTTTGGATCT+AGG - chr6_2:6477362-6477381 Msa0907710:intron 45.0%
GTGTTTGTGTTGTCGCATGT+CGG - chr6_2:6477723-6477742 Msa0907710:intron 45.0%
TGACACTGACACGTAGACAA+TGG - chr6_2:6477812-6477831 Msa0907710:intron 45.0%
ACCATCTCAACTGGTCCAAA+TGG + chr6_2:6478167-6478186 None:intergenic 45.0%
CAAATCCAGAAGCAGCCAAA+AGG + chr6_2:6478229-6478248 None:intergenic 45.0%
ACAGAAAAGAGCTTGGAAGG+AGG - chr6_2:6478370-6478389 Msa0907710:CDS 45.0%
!! AATAATAATAATAATATAAG+AGG - chr6_2:6475487-6475506 Msa0907710:CDS 5.0%
!! TAAAAAATATAAAATTGAAA+AGG + chr6_2:6477550-6477569 None:intergenic 5.0%
!! TGTTGGTGTGACGGTTTTGG+TGG + chr6_2:6474595-6474614 None:intergenic 50.0%
! GGTTGTTGGTGTGACGGTTT+TGG + chr6_2:6474598-6474617 None:intergenic 50.0%
GGTCGAGATAAGACGGTTGT+TGG + chr6_2:6474612-6474631 None:intergenic 50.0%
TATCAGCGTGGACGTTGGAA+CGG + chr6_2:6474662-6474681 None:intergenic 50.0%
GATCTTATCAGCGTGGACGT+TGG + chr6_2:6474667-6474686 None:intergenic 50.0%
!! CTCAGCCGTTTTGCATGCAA+CGG - chr6_2:6474687-6474706 Msa0907710:CDS 50.0%
CATATTCCAACGTCCACGAC+AGG + chr6_2:6474721-6474740 None:intergenic 50.0%
CTGTCGTGGACGTTGGAATA+TGG - chr6_2:6474719-6474738 Msa0907710:CDS 50.0%
GGAGAAGATGCTATTGCTGC+TGG - chr6_2:6474832-6474851 Msa0907710:CDS 50.0%
TGGACTCGCCCCAATAGTTA+AGG - chr6_2:6475545-6475564 Msa0907710:CDS 50.0%
CACATTGTGCATCAGCTAGG+TGG + chr6_2:6476434-6476453 None:intergenic 50.0%
CACCTAGCTGATGCACAATG+TGG - chr6_2:6476432-6476451 Msa0907710:intron 50.0%
GTGTTTGTGTCGTCGCATGT+TGG - chr6_2:6477666-6477685 Msa0907710:intron 50.0%
CGTGTCTGGTTGATCGATGT+GGG + chr6_2:6477899-6477918 None:intergenic 50.0%
GCCATTTGGACCAGTTGAGA+TGG - chr6_2:6478163-6478182 Msa0907710:CDS 50.0%
TCTTTCGAGAAGGGAGGCGA+CGG + chr6_2:6474551-6474570 None:intergenic 55.0%
!! TTTGGTGGTGGTGGTGGAGA+AGG + chr6_2:6474580-6474599 None:intergenic 55.0%
!!! TGTGACGGTTTTGGTGGTGG+TGG + chr6_2:6474589-6474608 None:intergenic 55.0%
!! TGGTGTGACGGTTTTGGTGG+TGG + chr6_2:6474592-6474611 None:intergenic 55.0%
GGCTGAGGATCTTATCAGCG+TGG + chr6_2:6474674-6474693 None:intergenic 55.0%
CGTTGCATGCAAAACGGCTG+AGG + chr6_2:6474689-6474708 None:intergenic 55.0%
AACGGCTATAGGACCTGTCG+TGG - chr6_2:6474705-6474724 Msa0907710:CDS 55.0%
ATAGGACCTGTCGTGGACGT+TGG - chr6_2:6474712-6474731 Msa0907710:CDS 55.0%
TGCATCAGCTAGGTGGGAGT+GGG + chr6_2:6476427-6476446 None:intergenic 55.0%
GCGTGTCTGGTTGATCGATG+TGG + chr6_2:6477900-6477919 None:intergenic 55.0%
!! AGAGGCCTTTTGGCTGCTTC+TGG - chr6_2:6478221-6478240 Msa0907710:CDS 55.0%
!!! GACGGTTTTGGTGGTGGTGG+TGG + chr6_2:6474586-6474605 None:intergenic 60.0%
GTGCATCAGCTAGGTGGGAG+TGG + chr6_2:6476428-6476447 None:intergenic 60.0%
AGCGGTGGCTGAAGGATGGG+AGG + chr6_2:6474527-6474546 None:intergenic 65.0%
GGCAGCGGTGGCTGAAGGAT+GGG + chr6_2:6474530-6474549 None:intergenic 65.0%
CGGCAGCGGTGGCTGAAGGA+TGG + chr6_2:6474531-6474550 None:intergenic 70.0%
GAGAAGGGAGGCGACGGCAG+CGG + chr6_2:6474545-6474564 None:intergenic 70.0%
GCGACGGCAGCGGTGGCTGA+AGG + chr6_2:6474535-6474554 None:intergenic 75.0%
AAGGGAGGCGACGGCAGCGG+TGG + chr6_2:6474542-6474561 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 6474308 6478636 6474308 ID=Msa0907710;Name=Msa0907710
chr6_2 mRNA 6474308 6478636 6474308 ID=Msa0907710-mRNA-1;Parent=Msa0907710;Name=Msa0907710-mRNA-1;_AED=0.00;_eAED=0.00;_QI=143|1|1|1|1|1|4|223|492
chr6_2 exon 6474308 6474570 6474308 ID=Msa0907710-mRNA-1:exon:1997;Parent=Msa0907710-mRNA-1
chr6_2 exon 6474680 6474920 6474680 ID=Msa0907710-mRNA-1:exon:1996;Parent=Msa0907710-mRNA-1
chr6_2 exon 6475436 6476081 6475436 ID=Msa0907710-mRNA-1:exon:1995;Parent=Msa0907710-mRNA-1
chr6_2 exon 6477942 6478636 6477942 ID=Msa0907710-mRNA-1:exon:1994;Parent=Msa0907710-mRNA-1
chr6_2 five_prime_UTR 6478494 6478636 6478494 ID=Msa0907710-mRNA-1:five_prime_utr;Parent=Msa0907710-mRNA-1
chr6_2 CDS 6477942 6478493 6477942 ID=Msa0907710-mRNA-1:cds;Parent=Msa0907710-mRNA-1
chr6_2 CDS 6475436 6476081 6475436 ID=Msa0907710-mRNA-1:cds;Parent=Msa0907710-mRNA-1
chr6_2 CDS 6474680 6474920 6474680 ID=Msa0907710-mRNA-1:cds;Parent=Msa0907710-mRNA-1
chr6_2 CDS 6474531 6474570 6474531 ID=Msa0907710-mRNA-1:cds;Parent=Msa0907710-mRNA-1
chr6_2 three_prime_UTR 6474308 6474530 6474308 ID=Msa0907710-mRNA-1:three_prime_utr;Parent=Msa0907710-mRNA-1
Gene Sequence

>Msa0907710

ATGGCAACTCGTGTGGTCCCACAAAAGATCATCAAGAATCTCCGTTTCAAAACCACCACAAAACCATTAAACTCCTCCCATCCTTCAGCCACCGCTGCCGTCGCCTCCCTTCTCGAAAGAGAACAACCTTCTCCACCACCACCACCAAAACCGTCACACCAACAACCGTCTTATCTCGACCTAAACGACGCTGAGAGACTATTCTCAGCCGTTCCAACGTCCACGCTGATAAGATCCTCAGCCGTTTTGCATGCAACGGCTATAGGACCTGTCGTGGACGTTGGAATATGGGCTATGCAATCAAAATTGTTACAAACGGGAATCTTGAAAGATGCAGTTATGGCAGTTACAAAGAGAACATTTTATGAACATTTTTGTGCTGGAGAAGATGCTATTGCTGCTGGAAAGAGTATAAGGTCTGTTAATGAAGCTGGCTTACGTGGCATGCTTGTTTATGGTGTTGAAGATGCACATGATAATGATGGTTGTGATCGTAATCTTAAAGGGTTTCTTCATACCGTTGATGTTAGCAAATCACTTCCTCCATCTTCTGTGAGTTTTGTGATTGTGAAAATCACTGCAATATGTCCAATGGCATTACTAGAAAGAATAAGTGATCTTCTAAGATGGCAACAAAAAGACCCTTCATTCAATTTACCATGGAAACAAGACTCTCTACCAATTTTCTCAGAATCAAGTCCATTATACCACACTACAAAAAAACCAGAACCATTAACACCACAAGAAGAAAGTGATTTTCAACTAGCAAACCAAAGATTACAACAACTTTGTCAAAAATGTGTTGAAGCAAACATGCCACTATTGGTTGATGCTGAACACACTACTGTTCAACCAGCTATTGATTACTTCACATACTCTTCAGCAATTATGCATAATAAAGATGATAATCCTATTGTGTTTGGAACAATTCAAACTTATTTGAAAGATGCTAAGGAGAGATTGTTTCTTGCAACACAAGCTGCTGAAAAAATTGGAATTCCTATGGGATTTAAGTTGGTTAGAGGTGCTTATATGTCTACAGAAAGTACATTGGCTGAGTCTTTTGGATCTAGGTCACCAATTCATGATACTATTGAAGATACACATAATTGCTTCAATGATTGTTCATCTTATTTGCTTGAGAAGTTTGCTAATGGAAAAGGATCTGTTGTTCTTGCTACACACAACATTGAATCAGGGAAATTGGCTGCAGCAAAAGCATATGAAATTGGAATGGGAAAAGTGAACCACAAACTTGAATTTGCACAACTATGTGGAATGTCAGATGCACTTTCATTTGGTTTGAGCAATGCAGGGTTTAGAGTTAGCAAGTATATGCCATTTGGACCAGTTGAGATGGTTATGCCTTACCTATTGAGAAGAGCTGAAGAAAATAGAGGCCTTTTGGCTGCTTCTGGATTTGATAGACAACTCATAAGAAAAGAGCTTGGAAGGAGGCTTAAAGCTGCAATATTTTAA

Protein sequence

>Msa0907710

MATRVVPQKIIKNLRFKTTTKPLNSSHPSATAAVASLLEREQPSPPPPPKPSHQQPSYLDLNDAERLFSAVPTSTLIRSSAVLHATAIGPVVDVGIWAMQSKLLQTGILKDAVMAVTKRTFYEHFCAGEDAIAAGKSIRSVNEAGLRGMLVYGVEDAHDNDGCDRNLKGFLHTVDVSKSLPPSSVSFVIVKITAICPMALLERISDLLRWQQKDPSFNLPWKQDSLPIFSESSPLYHTTKKPEPLTPQEESDFQLANQRLQQLCQKCVEANMPLLVDAEHTTVQPAIDYFTYSSAIMHNKDDNPIVFGTIQTYLKDAKERLFLATQAAEKIGIPMGFKLVRGAYMSTESTLAESFGSRSPIHDTIEDTHNCFNDCSSYLLEKFANGKGSVVLATHNIESGKLAAAKAYEIGMGKVNHKLEFAQLCGMSDALSFGLSNAGFRVSKYMPFGPVEMVMPYLLRRAEENRGLLAASGFDRQLIRKELGRRLKAAIF*