AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0150840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0150840 MtrunA17_Chr1g0159011 81.959 582 84 6 1 562 25 605 0.0 864
Msa0150840 MtrunA17_Chr1g0159151 57.486 541 167 14 1 504 1 515 1.01e-145 430
Msa0150840 MtrunA17_Chr1g0159081 49.537 216 70 8 217 425 2 185 5.80e-35 130
Msa0150840 MtrunA17_Chr1g0159081 39.594 197 77 6 38 208 2 182 1.63e-16 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0150840 AT5G53220.5 40.586 239 113 4 325 562 152 362 3.21e-36 139
Msa0150840 AT5G53220.3 40.586 239 113 4 325 562 152 362 3.21e-36 139
Msa0150840 AT5G53220.2 40.586 239 113 4 325 562 152 362 3.21e-36 139
Msa0150840 AT5G53220.4 40.586 239 113 4 325 562 152 362 3.21e-36 139
Msa0150840 AT5G53220.6 40.586 239 113 4 325 562 152 362 3.21e-36 139
Msa0150840 AT5G53220.1 40.586 239 113 4 325 562 152 362 3.21e-36 139
Msa0150840 AT5G53220.7 40.586 239 113 4 325 562 152 362 3.21e-36 139

Find 89 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGTTCTTTCCTTCTTCTT+TGG 0.158836 1_4:+12573216 None:intergenic
CTTGAACAATGAAGAAAATT+TGG 0.181705 1_4:-12573197 Msa0150840:CDS
TTCCTTATACGTTTACTAAT+TGG 0.210834 1_4:+12572518 None:intergenic
TCTAAAATTCAGAGGAATAA+AGG 0.260264 1_4:-12572050 Msa0150840:CDS
TGTGCTAGTCAAGGGAAATT+TGG 0.273654 1_4:+12570447 None:intergenic
ACTGACATGCGTGCAGTATT+TGG 0.275393 1_4:-12572002 Msa0150840:CDS
CTTTATCGACAGGAAATTCT+TGG 0.285485 1_4:-12571942 Msa0150840:CDS
CTGCAAATTTCAACTCCTTC+GGG 0.292903 1_4:+12570528 None:intergenic
TGCCAATTAGTAAACGTATA+AGG 0.306342 1_4:-12572520 Msa0150840:CDS
TTCTTTATAACCTGACTAAT+CGG 0.339707 1_4:+12572413 None:intergenic
ATTGCAAGGCCGTTTCCTTT+TGG 0.341522 1_4:+12573141 None:intergenic
ATCTTGCGAGCTACTTGAAT+TGG 0.341748 1_4:+12572787 None:intergenic
CGGGATGATAAAACGTCTTC+AGG 0.347846 1_4:-12572983 Msa0150840:CDS
AGTGAGGAAAATTCTGATTC+AGG 0.356554 1_4:-12572635 Msa0150840:CDS
TCTGCAAATTTCAACTCCTT+CGG 0.360255 1_4:+12570527 None:intergenic
GAAATATTGTGAGAAATATC+AGG 0.379252 1_4:+12573286 None:intergenic
ACAGGTTCCTTCTCAAGAAA+TGG 0.379686 1_4:-12570421 Msa0150840:three_prime_UTR
GGACAAGTCTAATAGTGATT+TGG 0.391336 1_4:-12572813 Msa0150840:CDS
CTAAAATTCAGAGGAATAAA+GGG 0.393459 1_4:-12572049 Msa0150840:CDS
AATGAAGAAAATTTGGACTT+TGG 0.403938 1_4:-12573190 Msa0150840:CDS
CCCTTGACTAGCACATCAAC+AGG 0.411581 1_4:-12570439 Msa0150840:exon
GTCAGGTTATAAAGAAGAAA+AGG 0.421340 1_4:-12572406 Msa0150840:CDS
CTCACAATATTTCACTAGAT+AGG 0.421831 1_4:-12573276 Msa0150840:CDS
CATGTGCTGTAATTCCAAAA+AGG 0.422694 1_4:-12572601 Msa0150840:CDS
ATCCGACACGTCCTGTGAAT+CGG 0.439102 1_4:+12572100 None:intergenic
TGTGAATCGGAATCCTTGTT+AGG 0.443200 1_4:+12572113 None:intergenic
AACATGTACTGTAGCAGAAA+GGG 0.448253 1_4:-12572690 Msa0150840:CDS
TTATGATACTTGATCTTATG+AGG 0.452680 1_4:+12572956 None:intergenic
TTTATCGACAGGAAATTCTT+GGG 0.464557 1_4:-12571941 Msa0150840:CDS
TGATGATATGCCGATTAGTC+AGG 0.468717 1_4:-12572423 Msa0150840:CDS
TCAGAGGCTGTGCTTTGGGA+GGG 0.472217 1_4:-12570617 Msa0150840:intron
AAAGAAAACTGTAGAGGAGT+TGG 0.472479 1_4:-12570562 Msa0150840:CDS
TCATGAGCATCATCATTTGT+TGG 0.473135 1_4:+12572305 None:intergenic
CAGTTGTATGAGGAGACATT+TGG 0.480431 1_4:-12571915 Msa0150840:CDS
ACATTTGGCCGTGATGGGCG+TGG 0.480532 1_4:-12571900 Msa0150840:CDS
ATGTGCAAGATGTATCTGAT+AGG 0.485167 1_4:-12572739 Msa0150840:CDS
TCTTGGGCAACAGTTGTATG+AGG 0.490255 1_4:-12571925 Msa0150840:CDS
GAGGAGACATTTGGCCGTGA+TGG 0.495661 1_4:-12571906 Msa0150840:CDS
CATGATTCCATTTCTTGAGA+AGG 0.496468 1_4:+12570414 None:intergenic
TTCAGAGGCTGTGCTTTGGG+AGG 0.496982 1_4:-12570618 Msa0150840:intron
AGGAGACATTTGGCCGTGAT+GGG 0.506970 1_4:-12571905 Msa0150840:CDS
CAACATGTACTGTAGCAGAA+AGG 0.508098 1_4:-12572691 Msa0150840:CDS
TGTCTGCGTTCTTTATCGAC+AGG 0.516685 1_4:-12571952 Msa0150840:CDS
ATAAAGGGACAGAAACTAAG+TGG 0.516759 1_4:-12572034 Msa0150840:CDS
TATTTGCTGCAAATACCAAA+AGG 0.524727 1_4:-12573156 Msa0150840:CDS
GATTCACAGGACGTGTCGGA+TGG 0.528593 1_4:-12572098 Msa0150840:CDS
AACTCTGACAAGTCACAAGA+TGG 0.540600 1_4:-12572191 Msa0150840:CDS
ACCTGTTGATGTGCTAGTCA+AGG 0.543019 1_4:+12570438 None:intergenic
GTATCTGATAGGCAAGGTAG+TGG 0.560203 1_4:-12572728 Msa0150840:CDS
CTGCAAATACCAAAAGGAAA+CGG 0.569805 1_4:-12573150 Msa0150840:CDS
TAACAAGGATTCCGATTCAC+AGG 0.572296 1_4:-12572111 Msa0150840:CDS
GACTAAATCCACGCCCATCA+CGG 0.573460 1_4:+12571892 None:intergenic
CCTGTTGATGTGCTAGTCAA+GGG 0.578560 1_4:+12570439 None:intergenic
TCACTAGATAGGCAAGGTAG+TGG 0.578997 1_4:-12573265 Msa0150840:CDS
TTAGTCAGTATGATGCTGCT+AGG 0.582589 1_4:-12571875 Msa0150840:intron
GGATGCAGTGTTATGTATGA+AGG 0.583376 1_4:-12571976 Msa0150840:CDS
CGAGTCTGTAGACGACGCCT+TGG 0.585284 1_4:+12573028 None:intergenic
TTCCGATTCACAGGACGTGT+CGG 0.588054 1_4:-12572102 Msa0150840:CDS
AAGTTGACATTCAAATGCCA+AGG 0.590040 1_4:-12573045 Msa0150840:CDS
GCAGCATCTACTACACCCAC+TGG 0.592205 1_4:-12573361 Msa0150840:CDS
TCGCTCATAACGACATTGCA+AGG 0.594315 1_4:+12573127 None:intergenic
GAAAGTGATCATGATGATGA+TGG 0.603517 1_4:-12573100 Msa0150840:CDS
AGAAGAAAAGGAAAGCGAGT+AGG 0.610603 1_4:-12572394 Msa0150840:CDS
TACTGTAGCAGAAAGGGGAA+AGG 0.618230 1_4:-12572684 Msa0150840:CDS
GATTTGTCGTACAGTGAGGA+AGG 0.620223 1_4:-12572896 Msa0150840:CDS
GGCGTCGTCTACAGACTCGA+AGG 0.625375 1_4:-12573024 Msa0150840:CDS
TGATGAGGATGAATTAGAAG+AGG 0.628354 1_4:-12572282 Msa0150840:CDS
AAGTCACAAGATGGATGTAA+CGG 0.628561 1_4:-12572182 Msa0150840:CDS
TAAAGGGACAGAAACTAAGT+GGG 0.629592 1_4:-12572033 Msa0150840:CDS
AGACGTGTCTGATATGTCAC+AGG 0.633880 1_4:-12572834 Msa0150840:CDS
GAGGACATATCAAACAGTGA+GGG 0.634781 1_4:-12572263 Msa0150840:CDS
AGATATTATCTAAAATTCAG+AGG 0.636003 1_4:-12572058 Msa0150840:CDS
AGATGGATGTAACGGTGATG+TGG 0.636636 1_4:-12572174 Msa0150840:CDS
TGGTCTAAAGAAAACTGTAG+AGG 0.637199 1_4:-12570568 Msa0150840:CDS
TGATGATGCTCATGATGATG+AGG 0.643410 1_4:-12572297 Msa0150840:CDS
ACATGTACTGTAGCAGAAAG+GGG 0.647225 1_4:-12572689 Msa0150840:CDS
TGATGATGATGACTTAGGAG+TGG 0.647743 1_4:-12572918 Msa0150840:CDS
TTGGAAGAATATAATCCCGA+AGG 0.647955 1_4:-12570543 Msa0150840:CDS
AATATTTCACTAGATAGGCA+AGG 0.650372 1_4:-12573271 Msa0150840:CDS
CAAGATGTATCTGATAGGCA+AGG 0.654782 1_4:-12572734 Msa0150840:CDS
AGATTTAACAGATCCTAACA+AGG 0.666399 1_4:-12572126 Msa0150840:CDS
CGTAAGGACTGTCGTCAGTG+AGG 0.668852 1_4:+12570592 None:intergenic
CAATTATGCTCAAAAGAGTG+AGG 0.672246 1_4:-12572651 Msa0150840:CDS
AGAGGACATATCAAACAGTG+AGG 0.674008 1_4:-12572264 Msa0150840:CDS
CATGCGTGCAGTATTTGGAA+AGG 0.681411 1_4:-12571997 Msa0150840:CDS
AGTGGATTTGTCGTACAGTG+AGG 0.695906 1_4:-12572900 Msa0150840:CDS
TGAATCTGAAAATGACGACG+AGG 0.739287 1_4:-12572552 Msa0150840:CDS
AGATTTACAAGATAACAACA+AGG 0.742840 1_4:-12572768 Msa0150840:CDS
ACTGACGACAGTCCTTACGA+TGG 0.748511 1_4:-12570588 Msa0150840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTATTTTACTTTTTTG+TGG - chr1_4:12572447-12572466 Msa0150840:CDS 15.0%
!!! ATTATTAACAATTTTCTATC+AGG - chr1_4:12573043-12573062 Msa0150840:CDS 15.0%
!!! AGATATTATCTAAAATTCAG+AGG - chr1_4:12571658-12571677 Msa0150840:intron 20.0%
!! TTGTAATTCCATGTTATTAA+AGG - chr1_4:12572306-12572325 Msa0150840:CDS 20.0%
!!! AGTACTATGGTTTAAAATTA+CGG - chr1_4:12572688-12572707 Msa0150840:CDS 20.0%
!!! TAGACTTTAAAATCCTATTT+TGG - chr1_4:12572779-12572798 Msa0150840:CDS 20.0%
! GAAATATTGTGAGAAATATC+AGG + chr1_4:12570433-12570452 None:intergenic 25.0%
! CTTGAACAATGAAGAAAATT+TGG - chr1_4:12570519-12570538 Msa0150840:CDS 25.0%
! AATGAAGAAAATTTGGACTT+TGG - chr1_4:12570526-12570545 Msa0150840:CDS 25.0%
! TTATGATACTTGATCTTATG+AGG + chr1_4:12570763-12570782 None:intergenic 25.0%
!! AAAAATGATGATGATGACTT+AGG - chr1_4:12570793-12570812 Msa0150840:intron 25.0%
! AGATTTACAAGATAACAACA+AGG - chr1_4:12570948-12570967 Msa0150840:intron 25.0%
! TTCCTTATACGTTTACTAAT+TGG + chr1_4:12571201-12571220 None:intergenic 25.0%
! TTCTTTATAACCTGACTAAT+CGG + chr1_4:12571306-12571325 None:intergenic 25.0%
!! TCTAAAATTCAGAGGAATAA+AGG - chr1_4:12571666-12571685 Msa0150840:intron 25.0%
! CTAAAATTCAGAGGAATAAA+GGG - chr1_4:12571667-12571686 Msa0150840:intron 25.0%
! GCAAGATTCTTATCTAAAAA+AGG + chr1_4:12571905-12571924 None:intergenic 25.0%
!!! TTGCACTTTATGTTTTTGTT+TGG - chr1_4:12571921-12571940 Msa0150840:CDS 25.0%
!! CGTTTTCCTTTTATATTACT+TGG - chr1_4:12572185-12572204 Msa0150840:CDS 25.0%
! ACATGACCAAGTAATATAAA+AGG + chr1_4:12572194-12572213 None:intergenic 25.0%
!! TTTTATATTACTTGGTCATG+TGG - chr1_4:12572193-12572212 Msa0150840:CDS 25.0%
! TTCCATGTTATTAAAGGAAT+AGG - chr1_4:12572312-12572331 Msa0150840:CDS 25.0%
! TCCATGTTATTAAAGGAATA+GGG - chr1_4:12572313-12572332 Msa0150840:CDS 25.0%
! GAACAATTCAATATTACAGT+TGG + chr1_4:12572523-12572542 None:intergenic 25.0%
!! ATGCATGATTTTTGTATATG+TGG - chr1_4:12572663-12572682 Msa0150840:CDS 25.0%
!! TGCATGATTTTTGTATATGT+GGG - chr1_4:12572664-12572683 Msa0150840:CDS 25.0%
!! TACATTTTTCTGCGATATAA+AGG + chr1_4:12572732-12572751 None:intergenic 25.0%
!!! TTAAAATCCTATTTTGGTTG+CGG - chr1_4:12572785-12572804 Msa0150840:CDS 25.0%
! TAAGTTAAATCCAGCAAATA+AGG + chr1_4:12572964-12572983 None:intergenic 25.0%
!!! ACTTGCTATGTAACTTTTTT+TGG - chr1_4:12572987-12573006 Msa0150840:CDS 25.0%
!!! ATCAGGTTTCTAACATTTTT+TGG - chr1_4:12573060-12573079 Msa0150840:CDS 25.0%
!!! TTGAAATTCCAATTTTTCAG+AGG - chr1_4:12573083-12573102 Msa0150840:CDS 25.0%
CTCACAATATTTCACTAGAT+AGG - chr1_4:12570440-12570459 Msa0150840:exon 30.0%
AATATTTCACTAGATAGGCA+AGG - chr1_4:12570445-12570464 Msa0150840:exon 30.0%
! TATTTGCTGCAAATACCAAA+AGG - chr1_4:12570560-12570579 Msa0150840:CDS 30.0%
GGAAACTTGTAAGCAAAAAT+CGG - chr1_4:12570713-12570732 Msa0150840:intron 30.0%
GAAACTTGTAAGCAAAAATC+GGG - chr1_4:12570714-12570733 Msa0150840:intron 30.0%
TGCCAATTAGTAAACGTATA+AGG - chr1_4:12571196-12571215 Msa0150840:intron 30.0%
GTCAGGTTATAAAGAAGAAA+AGG - chr1_4:12571310-12571329 Msa0150840:intron 30.0%
! GTCTTTTGCTTACACATTTT+CGG + chr1_4:12571365-12571384 None:intergenic 30.0%
AGATTTAACAGATCCTAACA+AGG - chr1_4:12571590-12571609 Msa0150840:intron 30.0%
TTTATCGACAGGAAATTCTT+GGG - chr1_4:12571775-12571794 Msa0150840:intron 30.0%
! TTTTGTGCAAAAACTTGAAC+AGG + chr1_4:12572260-12572279 None:intergenic 30.0%
TCCCTATTCCTTTAATAACA+TGG + chr1_4:12572317-12572336 None:intergenic 30.0%
TGTGAATTTGAACTGTCATA+AGG - chr1_4:12572406-12572425 Msa0150840:CDS 30.0%
TAGAGGTCTCAGTATATATA+TGG - chr1_4:12572842-12572861 Msa0150840:CDS 30.0%
ACGACTTGTCAGTATATATA+TGG - chr1_4:12572928-12572947 Msa0150840:CDS 30.0%
!!! TGCTATGTAACTTTTTTTGG+AGG - chr1_4:12572990-12573009 Msa0150840:CDS 30.0%
! ATTCTGATTTTCAGTTACAC+AGG + chr1_4:12573023-12573042 None:intergenic 30.0%
!! TGAGATTTTCAAGAACAAAG+AGG - chr1_4:12573244-12573263 Msa0150840:CDS 30.0%
! ACATGTTTTGCCAAAGAAGA+AGG - chr1_4:12570490-12570509 Msa0150840:CDS 35.0%
CAAGTTCTTTCCTTCTTCTT+TGG + chr1_4:12570503-12570522 None:intergenic 35.0%
CTGCAAATACCAAAAGGAAA+CGG - chr1_4:12570566-12570585 Msa0150840:CDS 35.0%
! GAAAGTGATCATGATGATGA+TGG - chr1_4:12570616-12570635 Msa0150840:CDS 35.0%
AAGTTGACATTCAAATGCCA+AGG - chr1_4:12570671-12570690 Msa0150840:intron 35.0%
GGACAAGTCTAATAGTGATT+TGG - chr1_4:12570903-12570922 Msa0150840:intron 35.0%
ATGTGCAAGATGTATCTGAT+AGG - chr1_4:12570977-12570996 Msa0150840:intron 35.0%
AACATGTACTGTAGCAGAAA+GGG - chr1_4:12571026-12571045 Msa0150840:intron 35.0%
! CTCACTCTTTTGAGCATAAT+TGG + chr1_4:12571067-12571086 None:intergenic 35.0%
CAATTATGCTCAAAAGAGTG+AGG - chr1_4:12571065-12571084 Msa0150840:intron 35.0%
AGTGAGGAAAATTCTGATTC+AGG - chr1_4:12571081-12571100 Msa0150840:intron 35.0%
CATGTGCTGTAATTCCAAAA+AGG - chr1_4:12571115-12571134 Msa0150840:intron 35.0%
! TTACGAGTCTGTTTCCTTTT+TGG + chr1_4:12571132-12571151 None:intergenic 35.0%
TCATGAGCATCATCATTTGT+TGG + chr1_4:12571414-12571433 None:intergenic 35.0%
TGATGAGGATGAATTAGAAG+AGG - chr1_4:12571434-12571453 Msa0150840:intron 35.0%
AAGTCACAAGATGGATGTAA+CGG - chr1_4:12571534-12571553 Msa0150840:intron 35.0%
ATAAAGGGACAGAAACTAAG+TGG - chr1_4:12571682-12571701 Msa0150840:intron 35.0%
TAAAGGGACAGAAACTAAGT+GGG - chr1_4:12571683-12571702 Msa0150840:intron 35.0%
CTTTATCGACAGGAAATTCT+TGG - chr1_4:12571774-12571793 Msa0150840:intron 35.0%
TGTATATGTGGGTAGTACTA+TGG - chr1_4:12572675-12572694 Msa0150840:CDS 35.0%
AGCCAATACAGTTGAAATTG+CGG - chr1_4:12572751-12572770 Msa0150840:CDS 35.0%
AACCGCAATTTCAACTGTAT+TGG + chr1_4:12572756-12572775 None:intergenic 35.0%
! TAACAGTGTTCCTTATTTGC+TGG - chr1_4:12572951-12572970 Msa0150840:CDS 35.0%
! GTTTTCTTTAGACCATCGTA+AGG + chr1_4:12573143-12573162 None:intergenic 35.0%
TGGTCTAAAGAAAACTGTAG+AGG - chr1_4:12573148-12573167 Msa0150840:CDS 35.0%
AAAGAAAACTGTAGAGGAGT+TGG - chr1_4:12573154-12573173 Msa0150840:CDS 35.0%
TTGGAAGAATATAATCCCGA+AGG - chr1_4:12573173-12573192 Msa0150840:CDS 35.0%
TCTGCAAATTTCAACTCCTT+CGG + chr1_4:12573192-12573211 None:intergenic 35.0%
CATGATTCCATTTCTTGAGA+AGG + chr1_4:12573305-12573324 None:intergenic 35.0%
! GAACTAGATTTTGCACCAGT+GGG + chr1_4:12570373-12570392 None:intergenic 40.0%
! AGAACTAGATTTTGCACCAG+TGG + chr1_4:12570374-12570393 None:intergenic 40.0%
! TGATGATGATGACTTAGGAG+TGG - chr1_4:12570798-12570817 Msa0150840:intron 40.0%
ATCTTGCGAGCTACTTGAAT+TGG + chr1_4:12570932-12570951 None:intergenic 40.0%
CAAGATGTATCTGATAGGCA+AGG - chr1_4:12570982-12571001 Msa0150840:intron 40.0%
CAACATGTACTGTAGCAGAA+AGG - chr1_4:12571025-12571044 Msa0150840:intron 40.0%
ACATGTACTGTAGCAGAAAG+GGG - chr1_4:12571027-12571046 Msa0150840:intron 40.0%
TGAATCTGAAAATGACGACG+AGG - chr1_4:12571164-12571183 Msa0150840:intron 40.0%
! TGATGATATGCCGATTAGTC+AGG - chr1_4:12571293-12571312 Msa0150840:intron 40.0%
AGAAGAAAAGGAAAGCGAGT+AGG - chr1_4:12571322-12571341 Msa0150840:intron 40.0%
!! ATTTTCGGAGACGCTTTAGA+TGG + chr1_4:12571350-12571369 None:intergenic 40.0%
! TGATGATGCTCATGATGATG+AGG - chr1_4:12571419-12571438 Msa0150840:intron 40.0%
AGAGGACATATCAAACAGTG+AGG - chr1_4:12571452-12571471 Msa0150840:intron 40.0%
GAGGACATATCAAACAGTGA+GGG - chr1_4:12571453-12571472 Msa0150840:intron 40.0%
AACTCTGACAAGTCACAAGA+TGG - chr1_4:12571525-12571544 Msa0150840:intron 40.0%
TGTGAATCGGAATCCTTGTT+AGG + chr1_4:12571606-12571625 None:intergenic 40.0%
TAACAAGGATTCCGATTCAC+AGG - chr1_4:12571605-12571624 Msa0150840:intron 40.0%
GGATGCAGTGTTATGTATGA+AGG - chr1_4:12571740-12571759 Msa0150840:intron 40.0%
CAGTTGTATGAGGAGACATT+TGG - chr1_4:12571801-12571820 Msa0150840:intron 40.0%
TTAGTCAGTATGATGCTGCT+AGG - chr1_4:12571841-12571860 Msa0150840:intron 40.0%
TGAACAAGAAAGCTACCATG+TGG + chr1_4:12571959-12571978 None:intergenic 40.0%
! TACAGTGTTTTCCGTCAAAC+AGG + chr1_4:12572095-12572114 None:intergenic 40.0%
TGTTTGACGGAAAACACTGT+AGG - chr1_4:12572094-12572113 Msa0150840:CDS 40.0%
! AAGGCAACTTTTGTCTCGAT+AGG - chr1_4:12572425-12572444 Msa0150840:CDS 40.0%
TTGTGTACCGCAACCAAAAT+AGG + chr1_4:12572795-12572814 None:intergenic 40.0%
! AAGCACAGCCTCTGAAAAAT+TGG + chr1_4:12573094-12573113 None:intergenic 40.0%
!! ATTTTTCAGAGGCTGTGCTT+TGG - chr1_4:12573094-12573113 Msa0150840:CDS 40.0%
!! TTTTTCAGAGGCTGTGCTTT+GGG - chr1_4:12573095-12573114 Msa0150840:CDS 40.0%
CTGCAAATTTCAACTCCTTC+GGG + chr1_4:12573191-12573210 None:intergenic 40.0%
TGTGCTAGTCAAGGGAAATT+TGG + chr1_4:12573272-12573291 None:intergenic 40.0%
ACAGGTTCCTTCTCAAGAAA+TGG - chr1_4:12573295-12573314 Msa0150840:CDS 40.0%
TCACTAGATAGGCAAGGTAG+TGG - chr1_4:12570451-12570470 Msa0150840:exon 45.0%
! ATTGCAAGGCCGTTTCCTTT+TGG + chr1_4:12570578-12570597 None:intergenic 45.0%
TCGCTCATAACGACATTGCA+AGG + chr1_4:12570592-12570611 None:intergenic 45.0%
CGGGATGATAAAACGTCTTC+AGG - chr1_4:12570733-12570752 Msa0150840:intron 45.0%
! AGTGGATTTGTCGTACAGTG+AGG - chr1_4:12570816-12570835 Msa0150840:intron 45.0%
GATTTGTCGTACAGTGAGGA+AGG - chr1_4:12570820-12570839 Msa0150840:intron 45.0%
AGACGTGTCTGATATGTCAC+AGG - chr1_4:12570882-12570901 Msa0150840:intron 45.0%
GTATCTGATAGGCAAGGTAG+TGG - chr1_4:12570988-12571007 Msa0150840:intron 45.0%
TACTGTAGCAGAAAGGGGAA+AGG - chr1_4:12571032-12571051 Msa0150840:intron 45.0%
AGATGGATGTAACGGTGATG+TGG - chr1_4:12571542-12571561 Msa0150840:intron 45.0%
ACTGACATGCGTGCAGTATT+TGG - chr1_4:12571714-12571733 Msa0150840:intron 45.0%
CATGCGTGCAGTATTTGGAA+AGG - chr1_4:12571719-12571738 Msa0150840:intron 45.0%
TGTCTGCGTTCTTTATCGAC+AGG - chr1_4:12571764-12571783 Msa0150840:intron 45.0%
TCTTGGGCAACAGTTGTATG+AGG - chr1_4:12571791-12571810 Msa0150840:intron 45.0%
TCAGTATGATGCTGCTAGGT+AGG - chr1_4:12571845-12571864 Msa0150840:intron 45.0%
GAAAGCTACCATGTGGTAGA+AGG + chr1_4:12571952-12571971 None:intergenic 45.0%
CGTGAGTTTCGTGATACAGA+TGG + chr1_4:12572021-12572040 None:intergenic 45.0%
ACTTCCAGTGTCCTGTTTGA+CGG - chr1_4:12572081-12572100 Msa0150840:CDS 45.0%
! TTTTCCGTCAAACAGGACAC+TGG + chr1_4:12572088-12572107 None:intergenic 45.0%
AGGAATAGGGAACATGTCAG+TGG - chr1_4:12572326-12572345 Msa0150840:CDS 45.0%
AATAGGGAACATGTCAGTGG+AGG - chr1_4:12572329-12572348 Msa0150840:CDS 45.0%
GACCTCTTTCAGCTGTTTAG+AGG - chr1_4:12572825-12572844 Msa0150840:CDS 45.0%
GACCTCTAAACAGCTGAAAG+AGG + chr1_4:12572830-12572849 None:intergenic 45.0%
CCTGTTGATGTGCTAGTCAA+GGG + chr1_4:12573280-12573299 None:intergenic 45.0%
ACCTGTTGATGTGCTAGTCA+AGG + chr1_4:12573281-12573300 None:intergenic 45.0%
TTCCGATTCACAGGACGTGT+CGG - chr1_4:12571614-12571633 Msa0150840:intron 50.0%
ATCCGACACGTCCTGTGAAT+CGG + chr1_4:12571619-12571638 None:intergenic 50.0%
AGGAGACATTTGGCCGTGAT+GGG - chr1_4:12571811-12571830 Msa0150840:intron 50.0%
GACTAAATCCACGCCCATCA+CGG + chr1_4:12571827-12571846 None:intergenic 50.0%
ACTGACGACAGTCCTTACGA+TGG - chr1_4:12573128-12573147 Msa0150840:CDS 50.0%
CCCTTGACTAGCACATCAAC+AGG - chr1_4:12573277-12573296 Msa0150840:CDS 50.0%
GCAGCATCTACTACACCCAC+TGG - chr1_4:12570355-12570374 Msa0150840:three_prime_UTR 55.0%
GATTCACAGGACGTGTCGGA+TGG - chr1_4:12571618-12571637 Msa0150840:intron 55.0%
GAGGAGACATTTGGCCGTGA+TGG - chr1_4:12571810-12571829 Msa0150840:intron 55.0%
TGGAGCAGCCTTCTACCACA+TGG - chr1_4:12571941-12571960 Msa0150840:CDS 55.0%
! TTCAGAGGCTGTGCTTTGGG+AGG - chr1_4:12573098-12573117 Msa0150840:CDS 55.0%
!! TCAGAGGCTGTGCTTTGGGA+GGG - chr1_4:12573099-12573118 Msa0150840:CDS 55.0%
CGTAAGGACTGTCGTCAGTG+AGG + chr1_4:12573127-12573146 None:intergenic 55.0%
CGAGTCTGTAGACGACGCCT+TGG + chr1_4:12570691-12570710 None:intergenic 60.0%
GGCGTCGTCTACAGACTCGA+AGG - chr1_4:12570692-12570711 Msa0150840:intron 60.0%
!! ACATTTGGCCGTGATGGGCG+TGG - chr1_4:12571816-12571835 Msa0150840:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 12570352 12573386 12570352 ID=Msa0150840;Name=Msa0150840
chr1_4 mRNA 12570352 12573386 12570352 ID=Msa0150840-mRNA-1;Parent=Msa0150840;Name=Msa0150840-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0.5|1|1|1|2|103|563
chr1_4 exon 12570352 12570635 12570352 ID=Msa0150840-mRNA-1:exon:5065;Parent=Msa0150840-mRNA-1
chr1_4 exon 12571876 12573386 12571876 ID=Msa0150840-mRNA-1:exon:5064;Parent=Msa0150840-mRNA-1
chr1_4 CDS 12571876 12573386 12571876 ID=Msa0150840-mRNA-1:cds;Parent=Msa0150840-mRNA-1
chr1_4 CDS 12570455 12570635 12570455 ID=Msa0150840-mRNA-1:cds;Parent=Msa0150840-mRNA-1
chr1_4 three_prime_UTR 12570352 12570454 12570352 ID=Msa0150840-mRNA-1:three_prime_utr;Parent=Msa0150840-mRNA-1
Gene Sequence

>Msa0150840

ATGGCAGCATCTACTACACCCACTGGTGCAAAATCTAGTTCTGTAAATGTAATTCATATCATTGACAGCGACGATGAACCTGATATTTCTCACAATATTTCACTAGATAGGCAAGGTAGTGGAAACATTTCACTTGCAACATGTTTTGCCAAAGAAGAAGGAAAGAACTTGAACAATGAAGAAAATTTGGACTTTGGTGAAGATGTCTTATTTGCTGCAAATACCAAAAGGAAACGGCCTTGCAATGTCGTTATGAGCGAGTCAGAAAGTGATCATGATGATGATGGTATGAGCAACTCTATATCTACTGCTAATTTAGAAGTTGACATTCAAATGCCAAGGCGTCGTCTACAGACTCGAAGGAAACTTGTAAGCAAAAATCGGGATGATAAAACGTCTTCAGGTAGACCTCATAAGATCAAGTATCATAAGAGTATTTCAAAAAATGATGATGATGACTTAGGAGTGGATTTGTCGTACAGTGAGGAAGGTAATATTAATGATTTTATTGCTGATGCATCTGATTGTGAAGACGTGTCTGATATGTCACAGGACAAGTCTAATAGTGATTTGGATGCCAATTCAAGTAGCTCGCAAGATTTACAAGATAACAACAAGGATTCTTATGTGCAAGATGTATCTGATAGGCAAGGTAGTGGAAAAATTTCTCTGTCAACATGTACTGTAGCAGAAAGGGGAAAGGACTCTAACTCCAATTATGCTCAAAAGAGTGAGGAAAATTCTGATTCAGGCAAAGATTACTCATGTGCTGTAATTCCAAAAAGGAAACAGACTCGTAATGTTGTTCTAAGTGAATCTGAAAATGACGACGAGGACGATGATTTGCCAATTAGTAAACGTATAAGGAAGCATGTTGACGAAGACAGTGTTGATGATTTAGTAAATGCTGTTGATGATGCTGCTGCTGATAGTGACGACGATGATGATATGCCGATTAGTCAGGTTATAAAGAAGAAAAGGAAAGCGAGTAGGCGCCATCTAAAGCGTCTCCGAAAATGTGTAAGCAAAAGACATGATGATAAAACATCTTTGTGTTTTCCAACAAATGATGATGCTCATGATGATGAGGATGAATTAGAAGAGGACATATCAAACAGTGAGGGAGAAAACTTGAATGATTTTATTGTTGATGATTCTGATGTATCAGATATCAACTCTGACAAGTCACAAGATGGATGTAACGGTGATGTGGACTCTGATGTTTCGAATATATCGCAAGATTTAACAGATCCTAACAAGGATTCCGATTCACAGGACGTGTCGGATGGAGAAATAGACTTCAGTAAGATATTATCTAAAATTCAGAGGAATAAAGGGACAGAAACTAAGTGGGAATATGAAACTGACATGCGTGCAGTATTTGGAAAGGATGCAGTGTTATGTATGAAGGCTGTCTGCGTTCTTTATCGACAGGAAATTCTTGGGCAACAGTTGTATGAGGAGACATTTGGCCGTGATGGGCGTGGATTTAGTCAGTATGATGCTGCTAGAGGCTGTGCTTTGGGAGGGTTCCTCACTGACGACAGTCCTTACGATGGTCTAAAGAAAACTGTAGAGGAGTTGGAAGAATATAATCCCGAAGGAGTTGAAATTTGCAGAACACTTGCTCTTAAATACTCAAAACAAATATTTGAGATTTTCAAGAACAAAGAGGATCCAAATTTCCCTTGA

Protein sequence

>Msa0150840

MAASTTPTGAKSSSVNVIHIIDSDDEPDISHNISLDRQGSGNISLATCFAKEEGKNLNNEENLDFGEDVLFAANTKRKRPCNVVMSESESDHDDDGMSNSISTANLEVDIQMPRRRLQTRRKLVSKNRDDKTSSGRPHKIKYHKSISKNDDDDLGVDLSYSEEGNINDFIADASDCEDVSDMSQDKSNSDLDANSSSSQDLQDNNKDSYVQDVSDRQGSGKISLSTCTVAERGKDSNSNYAQKSEENSDSGKDYSCAVIPKRKQTRNVVLSESENDDEDDDLPISKRIRKHVDEDSVDDLVNAVDDAAADSDDDDDMPISQVIKKKRKASRRHLKRLRKCVSKRHDDKTSLCFPTNDDAHDDEDELEEDISNSEGENLNDFIVDDSDVSDINSDKSQDGCNGDVDSDVSNISQDLTDPNKDSDSQDVSDGEIDFSKILSKIQRNKGTETKWEYETDMRAVFGKDAVLCMKAVCVLYRQEILGQQLYEETFGRDGRGFSQYDAARGCALGGFLTDDSPYDGLKKTVEELEEYNPEGVEICRTLALKYSKQIFEIFKNKEDPNFP*