Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394970 | AES67918.1 | 82.000 | 50 | 8 | 1 | 188 | 236 | 1 | 50 | 3.64e-16 | 81.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394970 | G7IHY9 | 82.000 | 50 | 8 | 1 | 188 | 236 | 1 | 50 | 1.74e-16 | 81.3 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016570 | Msa0394970 | 0.805478 | 1.309497e-49 | -8.615850e-47 |
| Msa0016580 | Msa0394970 | 0.817859 | 2.650522e-52 | -8.615850e-47 |
| Msa0064970 | Msa0394970 | 0.804089 | 2.553481e-49 | -8.615850e-47 |
| Msa0102070 | Msa0394970 | 0.806429 | 8.261198e-50 | -8.615850e-47 |
| Msa0110270 | Msa0394970 | 0.815922 | 7.213017e-52 | -8.615850e-47 |
| Msa0111510 | Msa0394970 | 0.807109 | 5.934861e-50 | -8.615850e-47 |
| Msa0142220 | Msa0394970 | 0.831998 | 1.214435e-55 | -8.615850e-47 |
| Msa0145750 | Msa0394970 | 0.800087 | 1.699163e-48 | -8.615850e-47 |
| Msa0153910 | Msa0394970 | 0.809750 | 1.621815e-50 | -8.615850e-47 |
| Msa0199240 | Msa0394970 | 0.802070 | 6.678745e-49 | -8.615850e-47 |
| Msa0200000 | Msa0394970 | 0.805861 | 1.088242e-49 | -8.615850e-47 |
| Msa0227480 | Msa0394970 | 0.811487 | 6.830155e-51 | -8.615850e-47 |
| Msa0232850 | Msa0394970 | 0.823841 | 1.114810e-53 | -8.615850e-47 |
| Msa0365500 | Msa0394970 | 0.832757 | 7.876403e-56 | -8.615850e-47 |
| Msa0371730 | Msa0394970 | 0.809032 | 2.311642e-50 | -8.615850e-47 |
| Msa0384800 | Msa0394970 | 0.816164 | 6.368960e-52 | -8.615850e-47 |
| Msa0384890 | Msa0394970 | 0.822075 | 2.875261e-53 | -8.615850e-47 |
| Msa0394970 | Msa0402290 | 0.813877 | 2.048960e-51 | -8.615850e-47 |
| Msa0394970 | Msa0406120 | 0.811133 | 8.151933e-51 | -8.615850e-47 |
| Msa0394970 | Msa0407960 | 0.801011 | 1.100953e-48 | -8.615850e-47 |
| Msa0394970 | Msa0414410 | 0.822186 | 2.709708e-53 | -8.615850e-47 |
| Msa0394970 | Msa0414420 | 0.826895 | 2.109994e-54 | -8.615850e-47 |
| Msa0394970 | Msa0435230 | 0.840474 | 8.509661e-58 | -8.615850e-47 |
| Msa0394970 | Msa0436780 | 0.814036 | 1.890397e-51 | -8.615850e-47 |
| Msa0394970 | Msa0452900 | 0.838962 | 2.105313e-57 | -8.615850e-47 |
| Msa0394970 | Msa0453120 | 0.806009 | 1.012805e-49 | -8.615850e-47 |
| Msa0394970 | Msa0454370 | 0.811262 | 7.644236e-51 | -8.615850e-47 |
| Msa0394970 | Msa0454910 | 0.821568 | 3.767083e-53 | -8.615850e-47 |
| Msa0394970 | Msa0459160 | 0.813019 | 3.163948e-51 | -8.615850e-47 |
| Msa0394970 | Msa0466120 | 0.801853 | 7.402807e-49 | -8.615850e-47 |
| Msa0394970 | Msa0479340 | 0.842813 | 2.056503e-58 | -8.615850e-47 |
| Msa0394970 | Msa0491590 | 0.822874 | 1.875865e-53 | -8.615850e-47 |
| Msa0394970 | Msa0502760 | 0.810879 | 9.252719e-51 | -8.615850e-47 |
| Msa0394970 | Msa0505080 | 0.804145 | 2.485641e-49 | -8.615850e-47 |
| Msa0394970 | Msa0506270 | 0.813916 | 2.008860e-51 | -8.615850e-47 |
| Msa0394970 | Msa0532350 | 0.802619 | 5.149280e-49 | -8.615850e-47 |
| Msa0394970 | Msa0564890 | 0.824297 | 8.714227e-54 | -8.615850e-47 |
| Msa0394970 | Msa0592680 | 0.801849 | 7.416260e-49 | -8.615850e-47 |
| Msa0394970 | Msa0596150 | 0.821235 | 4.496655e-53 | -8.615850e-47 |
| Msa0394970 | Msa0636170 | 0.809656 | 1.698703e-50 | -8.615850e-47 |
| Msa0394970 | Msa0678930 | 0.838597 | 2.617018e-57 | -8.615850e-47 |
| Msa0394970 | Msa0686270 | 0.802128 | 6.497166e-49 | -8.615850e-47 |
| Msa0394970 | Msa0688270 | 0.800365 | 1.491657e-48 | -8.615850e-47 |
| Msa0394970 | Msa0694370 | 0.839237 | 1.786358e-57 | -8.615850e-47 |
| Msa0394970 | Msa0725850 | 0.818901 | 1.538777e-52 | -8.615850e-47 |
| Msa0394970 | Msa0726140 | 0.848211 | 7.080576e-60 | -8.615850e-47 |
| Msa0394970 | Msa0729800 | 0.834607 | 2.718304e-56 | -8.615850e-47 |
| Msa0394970 | Msa0733290 | 0.837722 | 4.395215e-57 | -8.615850e-47 |
| Msa0394970 | Msa0743810 | 0.835288 | 1.830634e-56 | -8.615850e-47 |
| Msa0394970 | Msa0745060 | 0.846524 | 2.058069e-59 | -8.615850e-47 |
| Msa0394970 | Msa0766630 | 0.824300 | 8.695599e-54 | -8.615850e-47 |
| Msa0394970 | Msa0767720 | 0.806565 | 7.734317e-50 | -8.615850e-47 |
| Msa0394970 | Msa0768310 | 0.809900 | 1.505709e-50 | -8.615850e-47 |
| Msa0394970 | Msa0783160 | 0.824228 | 9.041652e-54 | -8.615850e-47 |
| Msa0394970 | Msa0784290 | 0.805490 | 1.301902e-49 | -8.615850e-47 |
| Msa0394970 | Msa0787600 | 0.824156 | 9.402993e-54 | -8.615850e-47 |
| Msa0394970 | Msa0789250 | 0.802925 | 4.450620e-49 | -8.615850e-47 |
| Msa0394970 | Msa0808010 | 0.831821 | 1.343469e-55 | -8.615850e-47 |
| Msa0394970 | Msa0808020 | 0.823061 | 1.695966e-53 | -8.615850e-47 |
| Msa0394970 | Msa0824600 | 0.811111 | 8.245016e-51 | -8.615850e-47 |
| Msa0394970 | Msa0825860 | 0.843962 | 1.014730e-58 | -8.615850e-47 |
| Msa0394970 | Msa0833290 | 0.807815 | 4.203175e-50 | -8.615850e-47 |
| Msa0394970 | Msa0846210 | 0.848981 | 4.332895e-60 | -8.615850e-47 |
| Msa0394970 | Msa0846330 | 0.834356 | 3.143066e-56 | -8.615850e-47 |
| Msa0394970 | Msa0846350 | 0.824470 | 7.933166e-54 | -8.615850e-47 |
| Msa0394970 | Msa0848960 | 0.806698 | 7.250716e-50 | -8.615850e-47 |
| Msa0394970 | Msa0858980 | 0.821057 | 4.942105e-53 | -8.615850e-47 |
| Msa0394970 | Msa0864070 | 0.803774 | 2.968786e-49 | -8.615850e-47 |
| Msa0394970 | Msa0865320 | 0.828492 | 8.725554e-55 | -8.615850e-47 |
| Msa0394970 | Msa0885290 | 0.833923 | 4.035632e-56 | -8.615850e-47 |
| Msa0394970 | Msa0887990 | 0.807373 | 5.218479e-50 | -8.615850e-47 |
| Msa0394970 | Msa0888370 | 0.803499 | 3.386099e-49 | -8.615850e-47 |
| Msa0394970 | Msa0907260 | 0.800208 | 1.605233e-48 | -8.615850e-47 |
| Msa0394970 | Msa0917600 | 0.812340 | 4.454406e-51 | -8.615850e-47 |
| Msa0394970 | Msa0954910 | 0.819799 | 9.604601e-53 | -8.615850e-47 |
| Msa0394970 | Msa0956270 | 0.820817 | 5.613885e-53 | -8.615850e-47 |
| Msa0394970 | Msa0969450 | 0.806008 | 1.013377e-49 | -8.615850e-47 |
| Msa0394970 | Msa0981370 | 0.800805 | 1.213326e-48 | -8.615850e-47 |
| Msa0394970 | Msa0989060 | 0.805971 | 1.031524e-49 | -8.615850e-47 |
| Msa0394970 | Msa1016280 | 0.819406 | 1.181106e-52 | -8.615850e-47 |
| Msa0394970 | Msa1023050 | 0.830119 | 3.513840e-55 | -8.615850e-47 |
| Msa0394970 | Msa1024240 | 0.825185 | 5.380092e-54 | -8.615850e-47 |
| Msa0394970 | Msa1025360 | 0.841665 | 4.141471e-58 | -8.615850e-47 |
| Msa0394970 | Msa1025370 | 0.854089 | 1.552776e-61 | -8.615850e-47 |
| Msa0394970 | Msa1044830 | 0.852016 | 6.086851e-61 | -8.615850e-47 |
| Msa0394970 | Msa1044840 | 0.842676 | 2.235551e-58 | -8.615850e-47 |
| Msa0394970 | Msa1054790 | 0.802974 | 4.349618e-49 | -8.615850e-47 |
| Msa0394970 | Msa1060840 | 0.802220 | 6.219775e-49 | -8.615850e-47 |
| Msa0394970 | Msa1065570 | 0.843248 | 1.574902e-58 | -8.615850e-47 |
| Msa0394970 | Msa1087490 | 0.806129 | 9.554969e-50 | -8.615850e-47 |
| Msa0394970 | Msa1092990 | 0.814812 | 1.272917e-51 | -8.615850e-47 |
| Msa0394970 | Msa1100980 | 0.840206 | 1.000065e-57 | -8.615850e-47 |
| Msa0394970 | Msa1109440 | 0.807864 | 4.104175e-50 | -8.615850e-47 |
| Msa0394970 | Msa1111150 | 0.825080 | 5.697546e-54 | -8.615850e-47 |
| Msa0394970 | Msa1117150 | 0.817141 | 3.845582e-52 | -8.615850e-47 |
| Msa0394970 | Msa1121200 | 0.809155 | 2.175440e-50 | -8.615850e-47 |
| Msa0394970 | Msa1121490 | 0.818033 | 2.420294e-52 | -8.615850e-47 |
| Msa0394970 | Msa1135220 | 0.805777 | 1.133450e-49 | -8.615850e-47 |
| Msa0394970 | Msa1135740 | 0.827554 | 1.467465e-54 | -8.615850e-47 |
| Msa0394970 | Msa1136090 | 0.812912 | 3.338401e-51 | -8.615850e-47 |
| Msa0394970 | Msa1137690 | 0.812982 | 3.222378e-51 | -8.615850e-47 |
| Msa0394970 | Msa1146110 | 0.814632 | 1.395631e-51 | -8.615850e-47 |
| Msa0394970 | Msa1150370 | 0.822617 | 2.151841e-53 | -8.615850e-47 |
| Msa0394970 | Msa1187940 | 0.833439 | 5.328831e-56 | -8.615850e-47 |
| Msa0394970 | Msa1187950 | 0.847658 | 1.006266e-59 | -8.615850e-47 |
| Msa0394970 | Msa1192640 | 0.832502 | 9.115630e-56 | -8.615850e-47 |
| Msa0394970 | Msa1248310 | 0.800225 | 1.592833e-48 | -8.615850e-47 |
| Msa0394970 | Msa1269670 | 0.841272 | 5.255635e-58 | -8.615850e-47 |
| Msa0394970 | Msa1270230 | 0.834419 | 3.029475e-56 | -8.615850e-47 |
| Msa0394970 | Msa1270240 | 0.846725 | 1.813252e-59 | -8.615850e-47 |
| Msa0394970 | Msa1270270 | 0.807599 | 4.672357e-50 | -8.615850e-47 |
| Msa0394970 | Msa1283330 | 0.841081 | 5.899918e-58 | -8.615850e-47 |
| Msa0394970 | Msa1284680 | 0.803992 | 2.674829e-49 | -8.615850e-47 |
| Msa0394970 | Msa1285930 | 0.841838 | 3.726546e-58 | -8.615850e-47 |
| Msa0394970 | Msa1287800 | 0.825844 | 3.756483e-54 | -8.615850e-47 |
| Msa0394970 | Msa1287810 | 0.835487 | 1.630735e-56 | -8.615850e-47 |
| Msa0394970 | Msa1287830 | 0.805015 | 1.637076e-49 | -8.615850e-47 |
| Msa0394970 | Msa1289430 | 0.824944 | 6.133236e-54 | -8.615850e-47 |
| Msa0394970 | Msa1297210 | 0.819570 | 1.083685e-52 | -8.615850e-47 |
| Msa0394970 | Msa1307890 | 0.827292 | 1.695753e-54 | -8.615850e-47 |
| Msa0394970 | Msa1320300 | 0.822412 | 2.401548e-53 | -8.615850e-47 |
| Msa0394970 | Msa1340590 | 0.827492 | 1.518090e-54 | -8.615850e-47 |
| Msa0394970 | Msa1397580 | 0.828511 | 8.632213e-55 | -8.615850e-47 |
| Msa0394970 | Msa1397860 | 0.817657 | 2.944034e-52 | -8.615850e-47 |
| Msa0394970 | Msa1404000 | 0.836072 | 1.159552e-56 | -8.615850e-47 |
| Msa0394970 | Msa1415310 | 0.813396 | 2.614300e-51 | -8.615850e-47 |
| Msa0394970 | Msa1422180 | 0.848451 | 6.079654e-60 | -8.615850e-47 |
| Msa0394970 | Msa1433120 | 0.810577 | 1.075469e-50 | -8.615850e-47 |
| Msa0394970 | Msa1451570 | 0.828399 | 9.185013e-55 | -8.615850e-47 |
| Msa0251320 | Msa0394970 | 0.800965 | 1.125118e-48 | -8.615850e-47 |
| Msa0267000 | Msa0394970 | 0.843630 | 1.245240e-58 | -8.615850e-47 |
| Msa0267010 | Msa0394970 | 0.834822 | 2.399522e-56 | -8.615850e-47 |
| Msa0270520 | Msa0394970 | 0.804932 | 1.703722e-49 | -8.615850e-47 |
| Msa0290870 | Msa0394970 | 0.815726 | 7.976736e-52 | -8.615850e-47 |
| Msa0309020 | Msa0394970 | 0.806648 | 7.426359e-50 | -8.615850e-47 |
| Msa0313760 | Msa0394970 | 0.807971 | 3.894699e-50 | -8.615850e-47 |
| Msa0326200 | Msa0394970 | 0.805774 | 1.134939e-49 | -8.615850e-47 |
| Msa0342240 | Msa0394970 | 0.802955 | 4.387589e-49 | -8.615850e-47 |
| Msa0355220 | Msa0394970 | 0.813327 | 2.707510e-51 | -8.615850e-47 |
| Msa0360510 | Msa0394970 | 0.822939 | 1.810736e-53 | -8.615850e-47 |
| Msa0363300 | Msa0394970 | 0.817625 | 2.993321e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 87 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTTGGTCTGTGATTTC+TGG | 0.050483 | 3_2:+10286353 | Msa0394970:CDS |
| GACCAATGAAACTTTGATTT+TGG | 0.152644 | 3_2:-10287852 | None:intergenic |
| CGAGGCTCATCTTCAATTCT+TGG | 0.189969 | 3_2:-10288576 | None:intergenic |
| ATAGTTTGACCAATTCTTTC+AGG | 0.212536 | 3_2:-10288703 | None:intergenic |
| GTGAATTGTATTATCTTCTT+TGG | 0.230340 | 3_2:+10286339 | Msa0394970:CDS |
| TCAGAATTTGTTCTATGTTT+TGG | 0.235472 | 3_2:+10288905 | Msa0394970:three_prime_UTR |
| GCGGTTGGTGAGGGTGGTGG+TGG | 0.254227 | 3_2:-10287768 | None:intergenic |
| GATTACTGAAGCATTATTCT+TGG | 0.255205 | 3_2:-10288867 | None:intergenic |
| AAATTACCTCAGGGGTATTA+TGG | 0.257933 | 3_2:-10287610 | None:intergenic |
| TTCGCCCGTCGCGGGATTGC+CGG | 0.274956 | 3_2:+10285835 | Msa0394970:CDS |
| GTGGCGGTGGGTGTCGGTGG+TGG | 0.278327 | 3_2:-10287802 | None:intergenic |
| GGATTCTCACAAACTTGTTC+AGG | 0.290513 | 3_2:-10288555 | None:intergenic |
| TATCTATAGATCAAGTATTT+AGG | 0.291008 | 3_2:-10288627 | None:intergenic |
| TGTGCTTGTGTAAATAATAA+TGG | 0.311618 | 3_2:+10289014 | Msa0394970:three_prime_UTR |
| CTGAGAACAAACAAAGAAAT+AGG | 0.320928 | 3_2:-10288928 | None:intergenic |
| GTTTGTTCTCAGTATTGTTA+TGG | 0.344000 | 3_2:+10288939 | Msa0394970:three_prime_UTR |
| TTTGGCTAATTGTGGTTGTT+TGG | 0.361908 | 3_2:+10286298 | Msa0394970:CDS |
| GGTGTCGGTGGTGGGATTAC+CGG | 0.371562 | 3_2:-10287793 | None:intergenic |
| GGTGGGGAGAAGAGAAAATA+TGG | 0.374200 | 3_2:+10285897 | Msa0394970:CDS |
| CGTGGGATTGCCTGTGGGTG+GGG | 0.377259 | 3_2:+10285881 | Msa0394970:CDS |
| CGCGGGATTGCCGGTGGGAG+AGG | 0.386225 | 3_2:+10285844 | Msa0394970:CDS |
| GTGGCGGTTGGTGAGGGTGG+TGG | 0.387856 | 3_2:-10287771 | None:intergenic |
| TTTCCCGTTCTGGAGAAAAC+TGG | 0.398372 | 3_2:+10285932 | Msa0394970:CDS |
| AGAGTAGATGTCGGTGGCGG+TGG | 0.400061 | 3_2:-10287815 | None:intergenic |
| ATGTCGGTGGCGGTGGGTGT+CGG | 0.421373 | 3_2:-10287808 | None:intergenic |
| GCCATGGCCTACCCCAGTCC+TGG | 0.423813 | 3_2:-10287563 | None:intergenic |
| TCGTGGGATTGCCTGTGGGT+GGG | 0.425210 | 3_2:+10285880 | Msa0394970:CDS |
| GAGAAATCATTAACCTTTGA+AGG | 0.436824 | 3_2:-10288600 | None:intergenic |
| TGGCGGTGGGTGTCGGTGGT+GGG | 0.439733 | 3_2:-10287801 | None:intergenic |
| GCGGGATTGCCGGTGGGAGA+GGG | 0.446296 | 3_2:+10285845 | Msa0394970:CDS |
| AGGTCACAGACCGTTGGGTT+TGG | 0.448018 | 3_2:+10286077 | Msa0394970:CDS |
| TTACCGGTGGCGGTTGGTGA+GGG | 0.449672 | 3_2:-10287777 | None:intergenic |
| TCTGTGATTTCTGGACGGTT+AGG | 0.462457 | 3_2:+10286362 | Msa0394970:CDS |
| ATTACCGGTGGCGGTTGGTG+AGG | 0.463300 | 3_2:-10287778 | None:intergenic |
| GGTTGAGGTCACAGACCGTT+GGG | 0.466782 | 3_2:+10286072 | Msa0394970:intron |
| GAGAAAACTGGCAATGAGAG+TGG | 0.471220 | 3_2:+10285944 | Msa0394970:CDS |
| GTGCTTGTGTAAATAATAAT+GGG | 0.473813 | 3_2:+10289015 | Msa0394970:three_prime_UTR |
| GTCGTGGGATTGCCTGTGGG+TGG | 0.476001 | 3_2:+10285879 | Msa0394970:CDS |
| TGGCGGAGCTACACCAGGAC+TGG | 0.477684 | 3_2:+10287550 | Msa0394970:CDS |
| CGGTTGGTGAGGGTGGTGGT+GGG | 0.478515 | 3_2:-10287767 | None:intergenic |
| GCCCGTCGCGGGATTGCCGG+TGG | 0.489478 | 3_2:+10285838 | Msa0394970:CDS |
| GCAGAGAGTTCGCCCGTCGC+GGG | 0.494067 | 3_2:+10285827 | Msa0394970:CDS |
| GTGGGATTACCGGTGGCGGT+TGG | 0.498101 | 3_2:-10287783 | None:intergenic |
| CCGGTGGCGGTTGGTGAGGG+TGG | 0.507233 | 3_2:-10287774 | None:intergenic |
| TCCCACCGGCAATCCCGCGA+CGG | 0.507727 | 3_2:-10285840 | None:intergenic |
| TTCATCTCTTACAATATCAT+CGG | 0.511162 | 3_2:-10288508 | None:intergenic |
| ATAAGTAGTCATAAATATGA+AGG | 0.515248 | 3_2:-10288978 | None:intergenic |
| GTCGGTGGTGGGATTACCGG+TGG | 0.517087 | 3_2:-10287790 | None:intergenic |
| GGAAGCTTCATTCTCTCCAG+TGG | 0.520158 | 3_2:+10286098 | Msa0394970:CDS |
| GGCGGAGCTACACCAGGACT+GGG | 0.522153 | 3_2:+10287551 | Msa0394970:CDS |
| TCGGTGGCGGTGGGTGTCGG+TGG | 0.532262 | 3_2:-10287805 | None:intergenic |
| CCCACCGGCAATCCCGCGAC+GGG | 0.535383 | 3_2:-10285839 | None:intergenic |
| CCACCCTCACCAACCGCCAC+CGG | 0.539626 | 3_2:+10287774 | Msa0394970:CDS |
| ACCAGGACTGGGGTAGGCCA+TGG | 0.539890 | 3_2:+10287562 | Msa0394970:CDS |
| TTTCTCTTCTCCCCACCCAC+AGG | 0.540832 | 3_2:-10285891 | None:intergenic |
| GAGTAGATGTCGGTGGCGGT+GGG | 0.545048 | 3_2:-10287814 | None:intergenic |
| TGTATGTGTCCTGAAAGAAT+TGG | 0.545731 | 3_2:+10288694 | Msa0394970:three_prime_UTR |
| GAGGGTGGTGACTGATGTCG+TGG | 0.547839 | 3_2:+10285863 | Msa0394970:CDS |
| AGGTTGAGGTCACAGACCGT+TGG | 0.548684 | 3_2:+10286071 | Msa0394970:intron |
| TTTGGTCTGTGATTTCTGGA+CGG | 0.549216 | 3_2:+10286357 | Msa0394970:CDS |
| CAGTCACCACCCTCTCCCAC+CGG | 0.555027 | 3_2:-10285854 | None:intergenic |
| AGATGAGCCTCGTCCTTCAA+AGG | 0.558028 | 3_2:+10288587 | Msa0394970:CDS |
| ATCAGTGGCGGAGCTACACC+AGG | 0.562784 | 3_2:+10287545 | Msa0394970:intron |
| CAGAATAAATGGGTAGGCCA+TGG | 0.562894 | 3_2:-10287579 | None:intergenic |
| GGATTGCCGGTGGGAGAGGG+TGG | 0.565070 | 3_2:+10285848 | Msa0394970:CDS |
| TGCAGAGAGTTCGCCCGTCG+CGG | 0.580997 | 3_2:+10285826 | Msa0394970:CDS |
| TGATGTCGTGGGATTGCCTG+TGG | 0.581434 | 3_2:+10285875 | Msa0394970:CDS |
| AGCTACACCAGGACTGGGGT+AGG | 0.588464 | 3_2:+10287556 | Msa0394970:CDS |
| CTGGCAATGAGAGTGGGATG+TGG | 0.591976 | 3_2:+10285951 | Msa0394970:CDS |
| TCATTAACCTTTGAAGGACG+AGG | 0.592364 | 3_2:-10288594 | None:intergenic |
| GGTGGTGGGATTACCGGTGG+CGG | 0.595680 | 3_2:-10287787 | None:intergenic |
| CCCGTCGCGGGATTGCCGGT+GGG | 0.596409 | 3_2:+10285839 | Msa0394970:CDS |
| GAGAGAGTAGATGTCGGTGG+CGG | 0.605601 | 3_2:-10287818 | None:intergenic |
| GATGTTGTGTTATAATGCAA+AGG | 0.607796 | 3_2:-10287735 | None:intergenic |
| ATGTTGTGTTATAATGCAAA+GGG | 0.615568 | 3_2:-10287734 | None:intergenic |
| GATGTCGTGGGATTGCCTGT+GGG | 0.619802 | 3_2:+10285876 | Msa0394970:CDS |
| CTATAGATCAAGTATTTAGG+AGG | 0.621361 | 3_2:-10288624 | None:intergenic |
| TGGCAATGAGAGTGGGATGT+GGG | 0.650624 | 3_2:+10285952 | Msa0394970:CDS |
| AGGGTGGTGACTGATGTCGT+GGG | 0.652249 | 3_2:+10285864 | Msa0394970:CDS |
| AGAAAACTGGCAATGAGAGT+GGG | 0.663354 | 3_2:+10285945 | Msa0394970:CDS |
| GATGCAGAGAGAGTAGATGT+CGG | 0.678580 | 3_2:-10287824 | None:intergenic |
| AATGAAGCTTCCAAACCCAA+CGG | 0.686388 | 3_2:-10286087 | None:intergenic |
| GCAGAGAGAGTAGATGTCGG+TGG | 0.693798 | 3_2:-10287821 | None:intergenic |
| TAATATTAAAATTACCTCAG+GGG | 0.695972 | 3_2:-10287618 | None:intergenic |
| GCGGAGCTACACCAGGACTG+GGG | 0.705347 | 3_2:+10287552 | Msa0394970:CDS |
| TTTGGCTTAGACGACCCAAG+AGG | 0.712504 | 3_2:-10288765 | None:intergenic |
| AAAATACCATAATACCCCTG+AGG | 0.740413 | 3_2:+10287604 | Msa0394970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATGATCTATATTTA+CGG | + | chr3_2:10286606-10286625 | Msa0394970:intron | 10.0% |
| !!! | AATATCTAAGATATTTTAAT+AGG | + | chr3_2:10286709-10286728 | Msa0394970:intron | 10.0% |
| !! | TTGTTGAGAAAAAAAATTAT+CGG | + | chr3_2:10286536-10286555 | Msa0394970:intron | 15.0% |
| !! | ACGATGAAAAAAAATATTAT+TGG | + | chr3_2:10286578-10286597 | Msa0394970:intron | 15.0% |
| !!! | ATCATTTCTCTTTATTTATT+TGG | - | chr3_2:10286945-10286964 | None:intergenic | 15.0% |
| !! | TTAGAATAAATATGAATCAT+TGG | + | chr3_2:10287169-10287188 | Msa0394970:intron | 15.0% |
| !!! | AATGAATTTGATTTTTGATT+TGG | + | chr3_2:10287971-10287990 | Msa0394970:intron | 15.0% |
| !!! | TTTTATTTTTGTAAAGAGTT+CGG | + | chr3_2:10288049-10288068 | Msa0394970:intron | 15.0% |
| !!! | TATTTTTTATTTCTGTTAAC+AGG | + | chr3_2:10288089-10288108 | Msa0394970:intron | 15.0% |
| !! | ATTTAGCTACAACTAAATAT+AGG | + | chr3_2:10286469-10286488 | Msa0394970:intron | 20.0% |
| !! | TTTAGCTACAACTAAATATA+GGG | + | chr3_2:10286470-10286489 | Msa0394970:intron | 20.0% |
| !!! | TTTTTATTGGTCAAAAACAA+TGG | - | chr3_2:10287058-10287077 | None:intergenic | 20.0% |
| !!! | TTGTTTTTCTCACTTTTTAT+TGG | - | chr3_2:10287071-10287090 | None:intergenic | 20.0% |
| !! | AATAAAAAGTGAGAAAAACA+AGG | + | chr3_2:10287070-10287089 | Msa0394970:intron | 20.0% |
| !! | ATAAATATGAATCATTGGAA+AGG | + | chr3_2:10287174-10287193 | Msa0394970:intron | 20.0% |
| !!! | TTTCTTCCCATTTTTTTAAT+TGG | + | chr3_2:10287244-10287263 | Msa0394970:intron | 20.0% |
| !! | ACAAAGATAAAATAGACAAA+TGG | - | chr3_2:10287512-10287531 | None:intergenic | 20.0% |
| !! | TAATATTAAAATTACCTCAG+GGG | - | chr3_2:10287621-10287640 | None:intergenic | 20.0% |
| !! | GTAATATTAAAATTACCTCA+GGG | - | chr3_2:10287622-10287641 | None:intergenic | 20.0% |
| !! | AGTAATATTAAAATTACCTC+AGG | - | chr3_2:10287623-10287642 | None:intergenic | 20.0% |
| !!! | CATGTTTTTGTTCATTTAAA+CGG | + | chr3_2:10288189-10288208 | Msa0394970:intron | 20.0% |
| !!! | CATTTACACTTTTGTTATTT+TGG | + | chr3_2:10288226-10288245 | Msa0394970:intron | 20.0% |
| !!! | TTTTCGGTTAATGATTAAAT+AGG | + | chr3_2:10288309-10288328 | Msa0394970:intron | 20.0% |
| !!! | AAGTATATTTTCATTAGCAT+TGG | - | chr3_2:10288423-10288442 | None:intergenic | 20.0% |
| !!! | AAATCCATTCATTTTACAAA+AGG | + | chr3_2:10288481-10288500 | Msa0394970:CDS | 20.0% |
| !! | TATCTATAGATCAAGTATTT+AGG | - | chr3_2:10288630-10288649 | None:intergenic | 20.0% |
| !!! | AATTTTATTTATGAGCTTTC+AGG | - | chr3_2:10288674-10288693 | None:intergenic | 20.0% |
| !!! | ACAATATGTTTTAAGAAGAA+TGG | + | chr3_2:10288730-10288749 | Msa0394970:three_prime_UTR | 20.0% |
| !! | ATAAGTAGTCATAAATATGA+AGG | - | chr3_2:10288981-10289000 | None:intergenic | 20.0% |
| ! | TCAAAAGTGATTGAATAACT+CGG | + | chr3_2:10286128-10286147 | Msa0394970:intron | 25.0% |
| ! | TGAATTATAATCATGTGTTG+TGG | + | chr3_2:10286184-10286203 | Msa0394970:intron | 25.0% |
| ! | ACAAAAATGTTGAATTTGAG+CGG | - | chr3_2:10286222-10286241 | None:intergenic | 25.0% |
| ! | GTGAATTGTATTATCTTCTT+TGG | + | chr3_2:10286339-10286358 | Msa0394970:CDS | 25.0% |
| ! | TTTAGTTGTAGCTAAATTAC+AGG | - | chr3_2:10286466-10286485 | None:intergenic | 25.0% |
| ! | TTTATGATCTATATTTACGG+TGG | + | chr3_2:10286609-10286628 | Msa0394970:intron | 25.0% |
| ! | TTGTGAGTAGTAAAAATGAA+TGG | + | chr3_2:10286749-10286768 | Msa0394970:intron | 25.0% |
| ! | TGTCTTACTATTTGATCAAA+TGG | + | chr3_2:10286789-10286808 | Msa0394970:intron | 25.0% |
| ! | ACTCAAAGGAAAATTTGAAA+TGG | - | chr3_2:10286913-10286932 | None:intergenic | 25.0% |
| ! | ACTTTAACCCATAATACATA+TGG | - | chr3_2:10287276-10287295 | None:intergenic | 25.0% |
| !!! | TTTCAGAAAGTGTTCAAAAT+TGG | - | chr3_2:10287473-10287492 | None:intergenic | 25.0% |
| ! | TAAAATAGACAAATGGCAAT+AGG | - | chr3_2:10287505-10287524 | None:intergenic | 25.0% |
| !! | GGTATTTTCACAGAATAAAT+GGG | - | chr3_2:10287592-10287611 | None:intergenic | 25.0% |
| !! | TGGTATTTTCACAGAATAAA+TGG | - | chr3_2:10287593-10287612 | None:intergenic | 25.0% |
| ! | ATGTTGTGTTATAATGCAAA+GGG | - | chr3_2:10287737-10287756 | None:intergenic | 25.0% |
| !! | GAGAAACACTTACATTTTTA+GGG | - | chr3_2:10287894-10287913 | None:intergenic | 25.0% |
| !! | AGAGAAACACTTACATTTTT+AGG | - | chr3_2:10287895-10287914 | None:intergenic | 25.0% |
| ! | ATAACCCTAATCAAAACAAA+AGG | + | chr3_2:10288014-10288033 | Msa0394970:intron | 25.0% |
| ! | TAACCCTAATCAAAACAAAA+GGG | + | chr3_2:10288015-10288034 | Msa0394970:intron | 25.0% |
| ! | TTCATCTCTTACAATATCAT+CGG | - | chr3_2:10288511-10288530 | None:intergenic | 25.0% |
| !!! | TATGTTTTAAGAAGAATGGT+TGG | + | chr3_2:10288734-10288753 | Msa0394970:three_prime_UTR | 25.0% |
| !! | AGCATTTTTCACATACAAAT+TGG | - | chr3_2:10288843-10288862 | None:intergenic | 25.0% |
| !!! | CTTCAGTAATCATTTTGAAA+AGG | + | chr3_2:10288879-10288898 | Msa0394970:three_prime_UTR | 25.0% |
| !!! | TCAGAATTTGTTCTATGTTT+TGG | + | chr3_2:10288905-10288924 | Msa0394970:three_prime_UTR | 25.0% |
| ! | TGTGCTTGTGTAAATAATAA+TGG | + | chr3_2:10289014-10289033 | Msa0394970:three_prime_UTR | 25.0% |
| ! | GTGCTTGTGTAAATAATAAT+GGG | + | chr3_2:10289015-10289034 | Msa0394970:three_prime_UTR | 25.0% |
| AAAATTAAGTTCAACAGCAG+TGG | - | chr3_2:10286160-10286179 | None:intergenic | 30.0% | |
| TTTAGCGTTTGTTTCAGAAT+CGG | + | chr3_2:10286241-10286260 | Msa0394970:intron | 30.0% | |
| ! | GGTTAGGTATATCTTGTTTA+TGG | + | chr3_2:10286378-10286397 | Msa0394970:intron | 30.0% |
| GTAAAAATGAATGGCTAAGA+TGG | + | chr3_2:10286758-10286777 | Msa0394970:intron | 30.0% | |
| GATCAAATAGTAAGACATGT+GGG | - | chr3_2:10286786-10286805 | None:intergenic | 30.0% | |
| TGATCAAATAGTAAGACATG+TGG | - | chr3_2:10286787-10286806 | None:intergenic | 30.0% | |
| TACTATTTGATCAAATGGCT+AGG | + | chr3_2:10286794-10286813 | Msa0394970:intron | 30.0% | |
| TTCAGAGAAAGAAAATCACA+GGG | - | chr3_2:10286861-10286880 | None:intergenic | 30.0% | |
| GTCAAAAAGTTGTCAAAAAG+TGG | - | chr3_2:10286978-10286997 | None:intergenic | 30.0% | |
| AAAACAATGGAGAGAGAAAA+AGG | - | chr3_2:10287045-10287064 | None:intergenic | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | + | chr3_2:10287096-10287115 | Msa0394970:intron | 30.0% | |
| TATGAATCATTGGAAAGGAA+AGG | + | chr3_2:10287179-10287198 | Msa0394970:intron | 30.0% | |
| CTTCGGCCAATTAAAAAAAT+GGG | - | chr3_2:10287253-10287272 | None:intergenic | 30.0% | |
| !!! | GAGTTTGACATGTTTTTTTG+AGG | + | chr3_2:10287344-10287363 | Msa0394970:intron | 30.0% |
| TGCATTGAAGATTTCGATAT+TGG | + | chr3_2:10287370-10287389 | Msa0394970:intron | 30.0% | |
| !!! | TTTTGAAGTGCTAATGTTGT+TGG | + | chr3_2:10287419-10287438 | Msa0394970:intron | 30.0% |
| ! | TTTGAAGTGCTAATGTTGTT+GGG | + | chr3_2:10287420-10287439 | Msa0394970:intron | 30.0% |
| ! | TTTTCACAGAATAAATGGGT+AGG | - | chr3_2:10287588-10287607 | None:intergenic | 30.0% |
| AGAAAAAATTGGTGTGAAAG+TGG | - | chr3_2:10287654-10287673 | None:intergenic | 30.0% | |
| !! | TTGTGTTCTGGAGAAAAAAT+TGG | - | chr3_2:10287665-10287684 | None:intergenic | 30.0% |
| GATGTTGTGTTATAATGCAA+AGG | - | chr3_2:10287738-10287757 | None:intergenic | 30.0% | |
| CTCCAAAATCAAAGTTTCAT+TGG | + | chr3_2:10287850-10287869 | Msa0394970:intron | 30.0% | |
| !! | GACCAATGAAACTTTGATTT+TGG | - | chr3_2:10287855-10287874 | None:intergenic | 30.0% |
| AACCCTAATCAAAACAAAAG+GGG | + | chr3_2:10288016-10288035 | Msa0394970:intron | 30.0% | |
| !!! | ATCCCCTTTTGTTTTGATTA+GGG | - | chr3_2:10288021-10288040 | None:intergenic | 30.0% |
| !!! | AATCCCCTTTTGTTTTGATT+AGG | - | chr3_2:10288022-10288041 | None:intergenic | 30.0% |
| ! | ATTTTTGTAAAGAGTTCGGA+TGG | + | chr3_2:10288053-10288072 | Msa0394970:intron | 30.0% |
| ! | TTTTTGTAAAGAGTTCGGAT+GGG | + | chr3_2:10288054-10288073 | Msa0394970:intron | 30.0% |
| ! | ACTTCTTGATGATTTACTTG+TGG | + | chr3_2:10288147-10288166 | Msa0394970:intron | 30.0% |
| ! | CTTCTTGATGATTTACTTGT+GGG | + | chr3_2:10288148-10288167 | Msa0394970:intron | 30.0% |
| ! | TTCTTGATGATTTACTTGTG+GGG | + | chr3_2:10288149-10288168 | Msa0394970:intron | 30.0% |
| ATTAGTTCACTGACATGTTT+AGG | + | chr3_2:10288339-10288358 | Msa0394970:intron | 30.0% | |
| TGACATGTTTAGGAGAAAAA+TGG | + | chr3_2:10288349-10288368 | Msa0394970:intron | 30.0% | |
| AGAAAGATTTGCACAACAAA+CGG | - | chr3_2:10288394-10288413 | None:intergenic | 30.0% | |
| TATACTTATATGTTGTGTGC+AGG | + | chr3_2:10288436-10288455 | Msa0394970:intron | 30.0% | |
| ! | CCTTCCTTTTGTAAAATGAA+TGG | - | chr3_2:10288488-10288507 | None:intergenic | 30.0% |
| ! | CCATTCATTTTACAAAAGGA+AGG | + | chr3_2:10288485-10288504 | Msa0394970:CDS | 30.0% |
| GAGAAATCATTAACCTTTGA+AGG | - | chr3_2:10288603-10288622 | None:intergenic | 30.0% | |
| CTATAGATCAAGTATTTAGG+AGG | - | chr3_2:10288627-10288646 | None:intergenic | 30.0% | |
| ATAGTTTGACCAATTCTTTC+AGG | - | chr3_2:10288706-10288725 | None:intergenic | 30.0% | |
| !! | TTTTAAGAAGAATGGTTGGT+TGG | + | chr3_2:10288738-10288757 | Msa0394970:three_prime_UTR | 30.0% |
| !! | CAACTGAAGCATTTTTCATT+TGG | - | chr3_2:10288786-10288805 | None:intergenic | 30.0% |
| ! | GATTACTGAAGCATTATTCT+TGG | - | chr3_2:10288870-10288889 | None:intergenic | 30.0% |
| CTGAGAACAAACAAAGAAAT+AGG | - | chr3_2:10288931-10288950 | None:intergenic | 30.0% | |
| GTTTGTTCTCAGTATTGTTA+TGG | + | chr3_2:10288939-10288958 | Msa0394970:three_prime_UTR | 30.0% | |
| ATTAAAAATAACTCGCCGTG+TGG | + | chr3_2:10285998-10286017 | Msa0394970:intron | 35.0% | |
| TTAAAAATAACTCGCCGTGT+GGG | + | chr3_2:10285999-10286018 | Msa0394970:intron | 35.0% | |
| TTAGCGTTTGTTTCAGAATC+GGG | + | chr3_2:10286242-10286261 | Msa0394970:intron | 35.0% | |
| TTTGGCTAATTGTGGTTGTT+TGG | + | chr3_2:10286298-10286317 | Msa0394970:CDS | 35.0% | |
| GTACTTTAGCAGATCATCTT+CGG | + | chr3_2:10286400-10286419 | Msa0394970:intron | 35.0% | |
| TGATTTAACGCGTCTAATCT+CGG | - | chr3_2:10286648-10286667 | None:intergenic | 35.0% | |
| GAAAATCACAGGGAAAATGA+GGG | - | chr3_2:10286851-10286870 | None:intergenic | 35.0% | |
| AGAAAATCACAGGGAAAATG+AGG | - | chr3_2:10286852-10286871 | None:intergenic | 35.0% | |
| GTTCAGAGAAAGAAAATCAC+AGG | - | chr3_2:10286862-10286881 | None:intergenic | 35.0% | |
| ! | TTTGGTCTTCTAACACTCAA+AGG | - | chr3_2:10286927-10286946 | None:intergenic | 35.0% |
| GCTTCGGCCAATTAAAAAAA+TGG | - | chr3_2:10287254-10287273 | None:intergenic | 35.0% | |
| ACCCATAATACATATGGCTT+CGG | - | chr3_2:10287270-10287289 | None:intergenic | 35.0% | |
| GTGTTATGTTACCTAATCAG+TGG | + | chr3_2:10287530-10287549 | Msa0394970:intron | 35.0% | |
| TTATGTTACCTAATCAGTGG+CGG | + | chr3_2:10287533-10287552 | Msa0394970:intron | 35.0% | |
| AAAATACCATAATACCCCTG+AGG | + | chr3_2:10287604-10287623 | Msa0394970:CDS | 35.0% | |
| !! | AAATTACCTCAGGGGTATTA+TGG | - | chr3_2:10287613-10287632 | None:intergenic | 35.0% |
| ATCATTAACCGAAAAACCAC+AGG | - | chr3_2:10288304-10288323 | None:intergenic | 35.0% | |
| TGTATGTGTCCTGAAAGAAT+TGG | + | chr3_2:10288694-10288713 | Msa0394970:three_prime_UTR | 35.0% | |
| ! | TGTTCTTTTCTTTCCCGTTC+TGG | + | chr3_2:10285922-10285941 | Msa0394970:CDS | 40.0% |
| ! | ATTGCCAGTTTTCTCCAGAA+CGG | - | chr3_2:10285939-10285958 | None:intergenic | 40.0% |
| AGAAAACTGGCAATGAGAGT+GGG | + | chr3_2:10285945-10285964 | Msa0394970:CDS | 40.0% | |
| GCAAACACACATTGAGTCAA+TGG | - | chr3_2:10286051-10286070 | None:intergenic | 40.0% | |
| TTGACTCAATGTGTGTTTGC+AGG | + | chr3_2:10286051-10286070 | Msa0394970:intron | 40.0% | |
| AATGAAGCTTCCAAACCCAA+CGG | - | chr3_2:10286090-10286109 | None:intergenic | 40.0% | |
| AAGTGATTGAATAACTCGGC+TGG | + | chr3_2:10286132-10286151 | Msa0394970:intron | 40.0% | |
| AGTGATTGAATAACTCGGCT+GGG | + | chr3_2:10286133-10286152 | Msa0394970:intron | 40.0% | |
| TCATGTGTTGTGGCTTAAAG+AGG | + | chr3_2:10286194-10286213 | Msa0394970:intron | 40.0% | |
| CTGAACAAGTTATCCTTTGC+TGG | - | chr3_2:10286270-10286289 | None:intergenic | 40.0% | |
| !! | CAGCAAAGGATAACTTGTTC+AGG | + | chr3_2:10286268-10286287 | Msa0394970:intron | 40.0% |
| !! | CAAAGGATAACTTGTTCAGG+CGG | + | chr3_2:10286271-10286290 | Msa0394970:intron | 40.0% |
| CTTCTTTGGTCTGTGATTTC+TGG | + | chr3_2:10286353-10286372 | Msa0394970:CDS | 40.0% | |
| ! | TTTGGTCTGTGATTTCTGGA+CGG | + | chr3_2:10286357-10286376 | Msa0394970:CDS | 40.0% |
| ! | CAGATCATCTTCGGTTTGAT+GGG | + | chr3_2:10286409-10286428 | Msa0394970:intron | 40.0% |
| !! | ATCTTCGGTTTGATGGGTTA+AGG | + | chr3_2:10286415-10286434 | Msa0394970:intron | 40.0% |
| !! | TCTTCGGTTTGATGGGTTAA+GGG | + | chr3_2:10286416-10286435 | Msa0394970:intron | 40.0% |
| GAAATGGAAGAATGAGAGAG+AGG | - | chr3_2:10286897-10286916 | None:intergenic | 40.0% | |
| GAATCATTGGAAAGGAAAGG+AGG | + | chr3_2:10287182-10287201 | Msa0394970:intron | 40.0% | |
| GCCGAAGCCATATGTATTAT+GGG | + | chr3_2:10287266-10287285 | Msa0394970:intron | 40.0% | |
| ATTGGTGTGAAAGTGGCATA+TGG | - | chr3_2:10287647-10287666 | None:intergenic | 40.0% | |
| ACGTTACTGATGTTGTGTTC+TGG | - | chr3_2:10287677-10287696 | None:intergenic | 40.0% | |
| TAAAGAGTTCGGATGGGAAT+TGG | + | chr3_2:10288060-10288079 | Msa0394970:intron | 40.0% | |
| AAAGAGTTCGGATGGGAATT+GGG | + | chr3_2:10288061-10288080 | Msa0394970:intron | 40.0% | |
| AATGAGATTTCTCAGTCCTG+TGG | + | chr3_2:10288285-10288304 | Msa0394970:intron | 40.0% | |
| ! | TTCTCAGTCCTGTGGTTTTT+CGG | + | chr3_2:10288293-10288312 | Msa0394970:intron | 40.0% |
| GTTGTGCAAATCTTTCTCAC+TGG | + | chr3_2:10288397-10288416 | Msa0394970:intron | 40.0% | |
| ! | GGATTCTCACAAACTTGTTC+AGG | - | chr3_2:10288558-10288577 | None:intergenic | 40.0% |
| ! | TCATTAACCTTTGAAGGACG+AGG | - | chr3_2:10288597-10288616 | None:intergenic | 40.0% |
| GGTGGGGAGAAGAGAAAATA+TGG | + | chr3_2:10285897-10285916 | Msa0394970:CDS | 45.0% | |
| !! | TTTCCCGTTCTGGAGAAAAC+TGG | + | chr3_2:10285932-10285951 | Msa0394970:CDS | 45.0% |
| ! | TTGCCAGTTTTCTCCAGAAC+GGG | - | chr3_2:10285938-10285957 | None:intergenic | 45.0% |
| GAGAAAACTGGCAATGAGAG+TGG | + | chr3_2:10285944-10285963 | Msa0394970:CDS | 45.0% | |
| CAATGTGTGTTTGCAGGTTG+AGG | + | chr3_2:10286057-10286076 | Msa0394970:intron | 45.0% | |
| !! | CACTTTTGACTGTGTACCAC+TGG | - | chr3_2:10286117-10286136 | None:intergenic | 45.0% |
| ! | ACTTGTTCAGGCGGCATTTT+TGG | + | chr3_2:10286280-10286299 | Msa0394970:intron | 45.0% |
| !!! | GCGGCATTTTTGGCTAATTG+TGG | + | chr3_2:10286290-10286309 | Msa0394970:CDS | 45.0% |
| ! | TCTGTGATTTCTGGACGGTT+AGG | + | chr3_2:10286362-10286381 | Msa0394970:CDS | 45.0% |
| ! | GCAGATCATCTTCGGTTTGA+TGG | + | chr3_2:10286408-10286427 | Msa0394970:intron | 45.0% |
| !! | CTTCGGTTTGATGGGTTAAG+GGG | + | chr3_2:10286417-10286436 | Msa0394970:intron | 45.0% |
| TGAAGACCAAGCCAATGATG+TGG | + | chr3_2:10286674-10286693 | Msa0394970:intron | 45.0% | |
| TCACAGGGAAAATGAGGGTT+TGG | - | chr3_2:10286846-10286865 | None:intergenic | 45.0% | |
| GGAAGAATGAGAGAGAGGAA+AGG | - | chr3_2:10286892-10286911 | None:intergenic | 45.0% | |
| GGCCGAAGCCATATGTATTA+TGG | + | chr3_2:10287265-10287284 | Msa0394970:intron | 45.0% | |
| CAGAATAAATGGGTAGGCCA+TGG | - | chr3_2:10287582-10287601 | None:intergenic | 45.0% | |
| ! | AAGAGAAAGCACGTTTCTGG+AGG | - | chr3_2:10287712-10287731 | None:intergenic | 45.0% |
| ! | GAGAAGAGAAAGCACGTTTC+TGG | - | chr3_2:10287715-10287734 | None:intergenic | 45.0% |
| GATGCAGAGAGAGTAGATGT+CGG | - | chr3_2:10287827-10287846 | None:intergenic | 45.0% | |
| CGAGGCTCATCTTCAATTCT+TGG | - | chr3_2:10288579-10288598 | None:intergenic | 45.0% | |
| !!! | TGGTTGGTTGGTTTTCCTCT+TGG | + | chr3_2:10288750-10288769 | Msa0394970:three_prime_UTR | 45.0% |
| !!! | GGTTGGTTGGTTTTCCTCTT+GGG | + | chr3_2:10288751-10288770 | Msa0394970:three_prime_UTR | 45.0% |
| TGGCAATGAGAGTGGGATGT+GGG | + | chr3_2:10285952-10285971 | Msa0394970:CDS | 50.0% | |
| GGAAGCTTCATTCTCTCCAG+TGG | + | chr3_2:10286098-10286117 | Msa0394970:CDS | 50.0% | |
| TCAGAATCGGGTTCCAGCAA+AGG | + | chr3_2:10286254-10286273 | Msa0394970:intron | 50.0% | |
| AACGCGTCTAATCTCGGTCA+CGG | - | chr3_2:10286642-10286661 | None:intergenic | 50.0% | |
| ! | TCTACGCCACATCATTGGCT+TGG | - | chr3_2:10286683-10286702 | None:intergenic | 50.0% |
| AAGCCAATGATGTGGCGTAG+AGG | + | chr3_2:10286682-10286701 | Msa0394970:intron | 50.0% | |
| TGTCCTCTACGCCACATCAT+TGG | - | chr3_2:10286688-10286707 | None:intergenic | 50.0% | |
| GAGAGAGAGGAAAGGAGCTT+CGG | - | chr3_2:10286884-10286903 | None:intergenic | 50.0% | |
| GGAAAGGAAAGGAGGCTTCT+TGG | + | chr3_2:10287190-10287209 | Msa0394970:intron | 50.0% | |
| AAGGAAAGGAGGCTTCTTGG+TGG | + | chr3_2:10287193-10287212 | Msa0394970:intron | 50.0% | |
| ! | AGCACGTTTCTGGAGGAGAA+GGG | - | chr3_2:10287705-10287724 | None:intergenic | 50.0% |
| ! | AAGCACGTTTCTGGAGGAGA+AGG | - | chr3_2:10287706-10287725 | None:intergenic | 50.0% |
| AGTTCGGATGGGAATTGGGA+AGG | + | chr3_2:10288065-10288084 | Msa0394970:intron | 50.0% | |
| AGATGAGCCTCGTCCTTCAA+AGG | + | chr3_2:10288587-10288606 | Msa0394970:CDS | 50.0% | |
| ! | TTTGGCTTAGACGACCCAAG+AGG | - | chr3_2:10288768-10288787 | None:intergenic | 50.0% |
| AGGGTGGTGACTGATGTCGT+GGG | + | chr3_2:10285864-10285883 | Msa0394970:CDS | 55.0% | |
| TGATGTCGTGGGATTGCCTG+TGG | + | chr3_2:10285875-10285894 | Msa0394970:CDS | 55.0% | |
| GATGTCGTGGGATTGCCTGT+GGG | + | chr3_2:10285876-10285895 | Msa0394970:CDS | 55.0% | |
| TTTCTCTTCTCCCCACCCAC+AGG | - | chr3_2:10285894-10285913 | None:intergenic | 55.0% | |
| CTGGCAATGAGAGTGGGATG+TGG | + | chr3_2:10285951-10285970 | Msa0394970:CDS | 55.0% | |
| ATGTGGGTGAGTGAGTGGCA+TGG | + | chr3_2:10285968-10285987 | Msa0394970:intron | 55.0% | |
| CTCAGCAACTGCTTCCCACA+CGG | - | chr3_2:10286016-10286035 | None:intergenic | 55.0% | |
| AGGTTGAGGTCACAGACCGT+TGG | + | chr3_2:10286071-10286090 | Msa0394970:intron | 55.0% | |
| GGTTGAGGTCACAGACCGTT+GGG | + | chr3_2:10286072-10286091 | Msa0394970:intron | 55.0% | |
| AGGTCACAGACCGTTGGGTT+TGG | + | chr3_2:10286077-10286096 | Msa0394970:CDS | 55.0% | |
| ! | GTGTAGCTCCGCCACTGATT+AGG | - | chr3_2:10287544-10287563 | None:intergenic | 55.0% |
| GAGAGAGTAGATGTCGGTGG+CGG | - | chr3_2:10287821-10287840 | None:intergenic | 55.0% | |
| GCAGAGAGAGTAGATGTCGG+TGG | - | chr3_2:10287824-10287843 | None:intergenic | 55.0% | |
| GAGGGTGGTGACTGATGTCG+TGG | + | chr3_2:10285863-10285882 | Msa0394970:CDS | 60.0% | |
| TCGTGGGATTGCCTGTGGGT+GGG | + | chr3_2:10285880-10285899 | Msa0394970:CDS | 60.0% | |
| GTGGGATGTGGGTGAGTGAG+TGG | + | chr3_2:10285963-10285982 | Msa0394970:intron | 60.0% | |
| CGTGTGGGAAGCAGTTGCTG+AGG | + | chr3_2:10286014-10286033 | Msa0394970:intron | 60.0% | |
| AGCAGTTGCTGAGGCGTGTG+TGG | + | chr3_2:10286023-10286042 | Msa0394970:intron | 60.0% | |
| ! | ATCAGTGGCGGAGCTACACC+AGG | + | chr3_2:10287545-10287564 | Msa0394970:intron | 60.0% |
| AGCTACACCAGGACTGGGGT+AGG | + | chr3_2:10287556-10287575 | Msa0394970:CDS | 60.0% | |
| !! | TTACCGGTGGCGGTTGGTGA+GGG | - | chr3_2:10287780-10287799 | None:intergenic | 60.0% |
| ! | ATTACCGGTGGCGGTTGGTG+AGG | - | chr3_2:10287781-10287800 | None:intergenic | 60.0% |
| !! | GGTGTCGGTGGTGGGATTAC+CGG | - | chr3_2:10287796-10287815 | None:intergenic | 60.0% |
| ! | GAGTAGATGTCGGTGGCGGT+GGG | - | chr3_2:10287817-10287836 | None:intergenic | 60.0% |
| ! | AGAGTAGATGTCGGTGGCGG+TGG | - | chr3_2:10287818-10287837 | None:intergenic | 60.0% |
| TGCAGAGAGTTCGCCCGTCG+CGG | + | chr3_2:10285826-10285845 | Msa0394970:CDS | 65.0% | |
| CAGTCACCACCCTCTCCCAC+CGG | - | chr3_2:10285857-10285876 | None:intergenic | 65.0% | |
| GTCGTGGGATTGCCTGTGGG+TGG | + | chr3_2:10285879-10285898 | Msa0394970:CDS | 65.0% | |
| CGTGGGATTGCCTGTGGGTG+GGG | + | chr3_2:10285881-10285900 | Msa0394970:CDS | 65.0% | |
| TGGCGGAGCTACACCAGGAC+TGG | + | chr3_2:10287550-10287569 | Msa0394970:CDS | 65.0% | |
| GGCGGAGCTACACCAGGACT+GGG | + | chr3_2:10287551-10287570 | Msa0394970:CDS | 65.0% | |
| GCGGAGCTACACCAGGACTG+GGG | + | chr3_2:10287552-10287571 | Msa0394970:CDS | 65.0% | |
| ACCAGGACTGGGGTAGGCCA+TGG | + | chr3_2:10287562-10287581 | Msa0394970:CDS | 65.0% | |
| !! | CGGTTGGTGAGGGTGGTGGT+GGG | - | chr3_2:10287770-10287789 | None:intergenic | 65.0% |
| ! | GTGGGATTACCGGTGGCGGT+TGG | - | chr3_2:10287786-10287805 | None:intergenic | 65.0% |
| !! | GGTGGTGGGATTACCGGTGG+CGG | - | chr3_2:10287790-10287809 | None:intergenic | 65.0% |
| !! | GTCGGTGGTGGGATTACCGG+TGG | - | chr3_2:10287793-10287812 | None:intergenic | 65.0% |
| ! | ATGTCGGTGGCGGTGGGTGT+CGG | - | chr3_2:10287811-10287830 | None:intergenic | 65.0% |
| GCAGAGAGTTCGCCCGTCGC+GGG | + | chr3_2:10285827-10285846 | Msa0394970:CDS | 70.0% | |
| TTCGCCCGTCGCGGGATTGC+CGG | + | chr3_2:10285835-10285854 | Msa0394970:CDS | 70.0% | |
| TCCCACCGGCAATCCCGCGA+CGG | - | chr3_2:10285843-10285862 | None:intergenic | 70.0% | |
| GCGGGATTGCCGGTGGGAGA+GGG | + | chr3_2:10285845-10285864 | Msa0394970:CDS | 70.0% | |
| GGATTGCCGGTGGGAGAGGG+TGG | + | chr3_2:10285848-10285867 | Msa0394970:CDS | 70.0% | |
| GCCATGGCCTACCCCAGTCC+TGG | - | chr3_2:10287566-10287585 | None:intergenic | 70.0% | |
| !! | GCGGTTGGTGAGGGTGGTGG+TGG | - | chr3_2:10287771-10287790 | None:intergenic | 70.0% |
| !! | GTGGCGGTTGGTGAGGGTGG+TGG | - | chr3_2:10287774-10287793 | None:intergenic | 70.0% |
| CCACCCTCACCAACCGCCAC+CGG | + | chr3_2:10287774-10287793 | Msa0394970:CDS | 70.0% | |
| !! | TGGCGGTGGGTGTCGGTGGT+GGG | - | chr3_2:10287804-10287823 | None:intergenic | 70.0% |
| CCCACCGGCAATCCCGCGAC+GGG | - | chr3_2:10285842-10285861 | None:intergenic | 75.0% | |
| CCCGTCGCGGGATTGCCGGT+GGG | + | chr3_2:10285839-10285858 | Msa0394970:CDS | 75.0% | |
| CGCGGGATTGCCGGTGGGAG+AGG | + | chr3_2:10285844-10285863 | Msa0394970:CDS | 75.0% | |
| !! | CCGGTGGCGGTTGGTGAGGG+TGG | - | chr3_2:10287777-10287796 | None:intergenic | 75.0% |
| !! | GTGGCGGTGGGTGTCGGTGG+TGG | - | chr3_2:10287805-10287824 | None:intergenic | 75.0% |
| !! | TCGGTGGCGGTGGGTGTCGG+TGG | - | chr3_2:10287808-10287827 | None:intergenic | 75.0% |
| ! | GCCCGTCGCGGGATTGCCGG+TGG | + | chr3_2:10285838-10285857 | Msa0394970:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 10285801 | 10289052 | 10285801 | ID=Msa0394970;Name=Msa0394970 |
| chr3_2 | mRNA | 10285801 | 10289052 | 10285801 | ID=Msa0394970-mRNA-1;Parent=Msa0394970;Name=Msa0394970-mRNA-1;_AED=0.21;_eAED=0.43;_QI=0|0|0.16|0.5|1|1|6|399|248 |
| chr3_2 | exon | 10285801 | 10285973 | 10285801 | ID=Msa0394970-mRNA-1:exon:2632;Parent=Msa0394970-mRNA-1 |
| chr3_2 | exon | 10286073 | 10286133 | 10286073 | ID=Msa0394970-mRNA-1:exon:2633;Parent=Msa0394970-mRNA-1 |
| chr3_2 | exon | 10286290 | 10286383 | 10286290 | ID=Msa0394970-mRNA-1:exon:2634;Parent=Msa0394970-mRNA-1 |
| chr3_2 | exon | 10287550 | 10287625 | 10287550 | ID=Msa0394970-mRNA-1:exon:2635;Parent=Msa0394970-mRNA-1 |
| chr3_2 | exon | 10287716 | 10287862 | 10287716 | ID=Msa0394970-mRNA-1:exon:2636;Parent=Msa0394970-mRNA-1 |
| chr3_2 | exon | 10288458 | 10289052 | 10288458 | ID=Msa0394970-mRNA-1:exon:2637;Parent=Msa0394970-mRNA-1 |
| chr3_2 | CDS | 10285801 | 10285973 | 10285801 | ID=Msa0394970-mRNA-1:cds;Parent=Msa0394970-mRNA-1 |
| chr3_2 | CDS | 10286073 | 10286133 | 10286073 | ID=Msa0394970-mRNA-1:cds;Parent=Msa0394970-mRNA-1 |
| chr3_2 | CDS | 10286290 | 10286383 | 10286290 | ID=Msa0394970-mRNA-1:cds;Parent=Msa0394970-mRNA-1 |
| chr3_2 | CDS | 10287550 | 10287625 | 10287550 | ID=Msa0394970-mRNA-1:cds;Parent=Msa0394970-mRNA-1 |
| chr3_2 | CDS | 10287716 | 10287862 | 10287716 | ID=Msa0394970-mRNA-1:cds;Parent=Msa0394970-mRNA-1 |
| chr3_2 | CDS | 10288458 | 10288653 | 10288458 | ID=Msa0394970-mRNA-1:cds;Parent=Msa0394970-mRNA-1 |
| chr3_2 | three_prime_UTR | 10288654 | 10289052 | 10288654 | ID=Msa0394970-mRNA-1:three_prime_utr;Parent=Msa0394970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
