Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604350 | XP_013461666.1 | 79.861 | 144 | 7 | 2 | 1 | 122 | 1 | 144 | 2.83e-64 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015750 | Msa0604350 | 0.835824 | 1.340305e-56 | -8.615850e-47 |
| Msa0016570 | Msa0604350 | 0.839489 | 1.536685e-57 | -8.615850e-47 |
| Msa0016580 | Msa0604350 | 0.843539 | 1.317097e-58 | -8.615850e-47 |
| Msa0062860 | Msa0604350 | 0.809522 | 1.815238e-50 | -8.615850e-47 |
| Msa0064970 | Msa0604350 | 0.802105 | 6.569510e-49 | -8.615850e-47 |
| Msa0071500 | Msa0604350 | 0.806938 | 6.449059e-50 | -8.615850e-47 |
| Msa0092630 | Msa0604350 | 0.810212 | 1.289392e-50 | -8.615850e-47 |
| Msa0102070 | Msa0604350 | 0.824426 | 8.124021e-54 | -8.615850e-47 |
| Msa0110270 | Msa0604350 | 0.830804 | 2.389243e-55 | -8.615850e-47 |
| Msa0604350 | Msa0636170 | 0.973098 | 7.399839e-136 | -8.615850e-47 |
| Msa0604350 | Msa0639610 | 0.800121 | 1.671668e-48 | -8.615850e-47 |
| Msa0604350 | Msa0650630 | 0.814006 | 1.919009e-51 | -8.615850e-47 |
| Msa0604350 | Msa0678930 | 0.810340 | 1.210354e-50 | -8.615850e-47 |
| Msa0604350 | Msa0686270 | 0.813306 | 2.736963e-51 | -8.615850e-47 |
| Msa0604350 | Msa0694370 | 0.849394 | 3.327111e-60 | -8.615850e-47 |
| Msa0604350 | Msa0726140 | 0.837281 | 5.703205e-57 | -8.615850e-47 |
| Msa0604350 | Msa0729800 | 0.896606 | 3.140677e-76 | -8.615850e-47 |
| Msa0604350 | Msa0731940 | 0.800789 | 1.222094e-48 | -8.615850e-47 |
| Msa0604350 | Msa0732710 | 0.823489 | 1.347473e-53 | -8.615850e-47 |
| Msa0604350 | Msa0733290 | 0.865448 | 5.860792e-65 | -8.615850e-47 |
| Msa0604350 | Msa0743810 | 0.867902 | 9.717813e-66 | -8.615850e-47 |
| Msa0604350 | Msa0745060 | 0.864617 | 1.068843e-64 | -8.615850e-47 |
| Msa0604350 | Msa0760130 | 0.813224 | 2.852115e-51 | -8.615850e-47 |
| Msa0604350 | Msa0762360 | 0.809099 | 2.237202e-50 | -8.615850e-47 |
| Msa0604350 | Msa0764960 | 0.800573 | 1.352537e-48 | -8.615850e-47 |
| Msa0604350 | Msa0766630 | 0.829899 | 3.976445e-55 | -8.615850e-47 |
| Msa0604350 | Msa0767720 | 0.836347 | 9.872356e-57 | -8.615850e-47 |
| Msa0604350 | Msa0768290 | 0.819296 | 1.251006e-52 | -8.615850e-47 |
| Msa0604350 | Msa0768370 | 0.823041 | 1.714460e-53 | -8.615850e-47 |
| Msa0604350 | Msa0775300 | 0.814373 | 1.592277e-51 | -8.615850e-47 |
| Msa0604350 | Msa0783160 | 0.840141 | 1.039440e-57 | -8.615850e-47 |
| Msa0604350 | Msa0784290 | 0.814514 | 1.481936e-51 | -8.615850e-47 |
| Msa0604350 | Msa0784300 | 0.821739 | 3.439691e-53 | -8.615850e-47 |
| Msa0604350 | Msa0787600 | 0.823900 | 1.079994e-53 | -8.615850e-47 |
| Msa0604350 | Msa0789250 | 0.823937 | 1.058239e-53 | -8.615850e-47 |
| Msa0604350 | Msa0808010 | 0.838072 | 3.573970e-57 | -8.615850e-47 |
| Msa0604350 | Msa0808020 | 0.829738 | 4.351050e-55 | -8.615850e-47 |
| Msa0604350 | Msa0811080 | 0.821843 | 3.255059e-53 | -8.615850e-47 |
| Msa0604350 | Msa0811270 | 0.813828 | 2.100196e-51 | -8.615850e-47 |
| Msa0604350 | Msa0824600 | 0.814876 | 1.232289e-51 | -8.615850e-47 |
| Msa0604350 | Msa0825860 | 0.859437 | 4.137839e-63 | -8.615850e-47 |
| Msa0604350 | Msa0826750 | 0.810832 | 9.473525e-51 | -8.615850e-47 |
| Msa0604350 | Msa0846210 | 0.826991 | 2.001601e-54 | -8.615850e-47 |
| Msa0604350 | Msa0846330 | 0.842951 | 1.889649e-58 | -8.615850e-47 |
| Msa0604350 | Msa0846350 | 0.840821 | 6.902116e-58 | -8.615850e-47 |
| Msa0604350 | Msa0848960 | 0.824797 | 6.644302e-54 | -8.615850e-47 |
| Msa0604350 | Msa0851390 | 0.808284 | 3.340255e-50 | -8.615850e-47 |
| Msa0604350 | Msa0858980 | 0.849159 | 3.867000e-60 | -8.615850e-47 |
| Msa0604350 | Msa0864070 | 0.808777 | 2.621048e-50 | -8.615850e-47 |
| Msa0604350 | Msa0865320 | 0.842554 | 2.409037e-58 | -8.615850e-47 |
| Msa0604350 | Msa0872230 | 0.820950 | 5.231587e-53 | -8.615850e-47 |
| Msa0604350 | Msa0877250 | 0.804254 | 2.358995e-49 | -8.615850e-47 |
| Msa0604350 | Msa0885290 | 0.830390 | 3.016463e-55 | -8.615850e-47 |
| Msa0604350 | Msa0888370 | 0.865886 | 4.263629e-65 | -8.615850e-47 |
| Msa0604350 | Msa0896080 | 0.823291 | 1.499155e-53 | -8.615850e-47 |
| Msa0604350 | Msa0899430 | 0.815423 | 9.313885e-52 | -8.615850e-47 |
| Msa0604350 | Msa0899450 | 0.836547 | 8.779684e-57 | -8.615850e-47 |
| Msa0604350 | Msa0907070 | 0.803268 | 3.781054e-49 | -8.615850e-47 |
| Msa0604350 | Msa0907260 | 0.827137 | 1.846756e-54 | -8.615850e-47 |
| Msa0604350 | Msa0914760 | 0.807546 | 4.794204e-50 | -8.615850e-47 |
| Msa0604350 | Msa0917600 | 0.801928 | 7.142670e-49 | -8.615850e-47 |
| Msa0604350 | Msa0927380 | 0.805765 | 1.139589e-49 | -8.615850e-47 |
| Msa0604350 | Msa0952720 | 0.828649 | 7.996065e-55 | -8.615850e-47 |
| Msa0604350 | Msa0953120 | 0.803610 | 3.211462e-49 | -8.615850e-47 |
| Msa0604350 | Msa0954910 | 0.811629 | 6.361920e-51 | -8.615850e-47 |
| Msa0604350 | Msa0956270 | 0.804591 | 2.006995e-49 | -8.615850e-47 |
| Msa0604350 | Msa0957860 | 0.806381 | 8.458222e-50 | -8.615850e-47 |
| Msa0604350 | Msa0957960 | 0.805727 | 1.160688e-49 | -8.615850e-47 |
| Msa0604350 | Msa0958550 | 0.825276 | 5.120023e-54 | -8.615850e-47 |
| Msa0604350 | Msa0964900 | 0.815072 | 1.114797e-51 | -8.615850e-47 |
| Msa0604350 | Msa0967280 | 0.800007 | 1.763384e-48 | -8.615850e-47 |
| Msa0604350 | Msa0974870 | 0.814770 | 1.300520e-51 | -8.615850e-47 |
| Msa0604350 | Msa0981270 | 0.814813 | 1.272459e-51 | -8.615850e-47 |
| Msa0604350 | Msa0981370 | 0.824871 | 6.382585e-54 | -8.615850e-47 |
| Msa0604350 | Msa0989060 | 0.837889 | 3.980946e-57 | -8.615850e-47 |
| Msa0604350 | Msa1014540 | 0.808480 | 3.033566e-50 | -8.615850e-47 |
| Msa0604350 | Msa1016280 | 0.840915 | 6.521928e-58 | -8.615850e-47 |
| Msa0604350 | Msa1023050 | 0.834774 | 2.467118e-56 | -8.615850e-47 |
| Msa0604350 | Msa1023950 | 0.800456 | 1.428812e-48 | -8.615850e-47 |
| Msa0604350 | Msa1024240 | 0.825357 | 4.900291e-54 | -8.615850e-47 |
| Msa0604350 | Msa1025360 | 0.856607 | 2.869258e-62 | -8.615850e-47 |
| Msa0604350 | Msa1025370 | 0.858393 | 8.496085e-63 | -8.615850e-47 |
| Msa0604350 | Msa1028230 | 0.800121 | 1.671922e-48 | -8.615850e-47 |
| Msa0604350 | Msa1042430 | 0.812560 | 3.987273e-51 | -8.615850e-47 |
| Msa0604350 | Msa1044830 | 0.863118 | 3.126348e-64 | -8.615850e-47 |
| Msa0604350 | Msa1044840 | 0.854557 | 1.137157e-61 | -8.615850e-47 |
| Msa0604350 | Msa1065570 | 0.803191 | 3.922367e-49 | -8.615850e-47 |
| Msa0604350 | Msa1092990 | 0.856023 | 4.258146e-62 | -8.615850e-47 |
| Msa0604350 | Msa1096580 | 0.800229 | 1.589759e-48 | -8.615850e-47 |
| Msa0604350 | Msa1099970 | 0.800053 | 1.726014e-48 | -8.615850e-47 |
| Msa0604350 | Msa1100980 | 0.865527 | 5.534058e-65 | -8.615850e-47 |
| Msa0604350 | Msa1109440 | 0.824269 | 8.844454e-54 | -8.615850e-47 |
| Msa0604350 | Msa1112300 | 0.836305 | 1.011361e-56 | -8.615850e-47 |
| Msa0604350 | Msa1121200 | 0.828655 | 7.966406e-55 | -8.615850e-47 |
| Msa0604350 | Msa1121480 | 0.809563 | 1.778382e-50 | -8.615850e-47 |
| Msa0604350 | Msa1121490 | 0.825488 | 4.560405e-54 | -8.615850e-47 |
| Msa0604350 | Msa1123420 | 0.825337 | 4.952775e-54 | -8.615850e-47 |
| Msa0604350 | Msa1135220 | 0.804671 | 1.931339e-49 | -8.615850e-47 |
| Msa0604350 | Msa1135740 | 0.854609 | 1.098305e-61 | -8.615850e-47 |
| Msa0604350 | Msa1146100 | 0.807856 | 4.121062e-50 | -8.615850e-47 |
| Msa0604350 | Msa1146110 | 0.871468 | 6.679799e-67 | -8.615850e-47 |
| Msa0604350 | Msa1148020 | 0.812337 | 4.460473e-51 | -8.615850e-47 |
| Msa0604350 | Msa1149360 | 0.806216 | 9.159969e-50 | -8.615850e-47 |
| Msa0604350 | Msa1150370 | 0.822660 | 2.103805e-53 | -8.615850e-47 |
| Msa0604350 | Msa1160670 | 0.810490 | 1.123431e-50 | -8.615850e-47 |
| Msa0604350 | Msa1164120 | 0.800003 | 1.766793e-48 | -8.615850e-47 |
| Msa0604350 | Msa1173920 | 0.809132 | 2.200401e-50 | -8.615850e-47 |
| Msa0604350 | Msa1178340 | 0.810395 | 1.177364e-50 | -8.615850e-47 |
| Msa0604350 | Msa1184420 | 0.816438 | 5.529820e-52 | -8.615850e-47 |
| Msa0604350 | Msa1187940 | 0.873163 | 1.818931e-67 | -8.615850e-47 |
| Msa0604350 | Msa1187950 | 0.843022 | 1.809361e-58 | -8.615850e-47 |
| Msa0604350 | Msa1192640 | 0.834178 | 3.483396e-56 | -8.615850e-47 |
| Msa0604350 | Msa1230430 | 0.807483 | 4.943609e-50 | -8.615850e-47 |
| Msa0604350 | Msa1246880 | 0.838896 | 2.189811e-57 | -8.615850e-47 |
| Msa0604350 | Msa1248310 | 0.809228 | 2.098659e-50 | -8.615850e-47 |
| Msa0604350 | Msa1248370 | 0.801577 | 8.431333e-49 | -8.615850e-47 |
| Msa0604350 | Msa1260100 | 0.820946 | 5.242702e-53 | -8.615850e-47 |
| Msa0604350 | Msa1269670 | 0.857928 | 1.168271e-62 | -8.615850e-47 |
| Msa0604350 | Msa1270230 | 0.862583 | 4.573935e-64 | -8.615850e-47 |
| Msa0604350 | Msa1270240 | 0.832116 | 1.135547e-55 | -8.615850e-47 |
| Msa0604350 | Msa1270270 | 0.845558 | 3.767927e-59 | -8.615850e-47 |
| Msa0604350 | Msa1277660 | 0.801293 | 9.643193e-49 | -8.615850e-47 |
| Msa0604350 | Msa1283330 | 0.860028 | 2.747063e-63 | -8.615850e-47 |
| Msa0604350 | Msa1284680 | 0.822140 | 2.777942e-53 | -8.615850e-47 |
| Msa0604350 | Msa1285930 | 0.843625 | 1.248700e-58 | -8.615850e-47 |
| Msa0604350 | Msa1287800 | 0.842601 | 2.340786e-58 | -8.615850e-47 |
| Msa0604350 | Msa1287810 | 0.863035 | 3.316556e-64 | -8.615850e-47 |
| Msa0604350 | Msa1288560 | 0.819757 | 9.821644e-53 | -8.615850e-47 |
| Msa0604350 | Msa1289430 | 0.824919 | 6.217616e-54 | -8.615850e-47 |
| Msa0604350 | Msa1297210 | 0.840637 | 7.714526e-58 | -8.615850e-47 |
| Msa0604350 | Msa1305480 | 0.811202 | 7.877989e-51 | -8.615850e-47 |
| Msa0604350 | Msa1307890 | 0.830171 | 3.412049e-55 | -8.615850e-47 |
| Msa0604350 | Msa1320300 | 0.847687 | 9.875371e-60 | -8.615850e-47 |
| Msa0604350 | Msa1340590 | 0.886491 | 3.266524e-72 | -8.615850e-47 |
| Msa0604350 | Msa1344520 | 0.817325 | 3.496639e-52 | -8.615850e-47 |
| Msa0604350 | Msa1366810 | 0.803180 | 3.941490e-49 | -8.615850e-47 |
| Msa0604350 | Msa1381530 | 0.812577 | 3.952161e-51 | -8.615850e-47 |
| Msa0604350 | Msa1382690 | 0.807788 | 4.260576e-50 | -8.615850e-47 |
| Msa0604350 | Msa1386330 | 0.810297 | 1.236204e-50 | -8.615850e-47 |
| Msa0604350 | Msa1397150 | 0.808978 | 2.374276e-50 | -8.615850e-47 |
| Msa0604350 | Msa1397580 | 0.875196 | 3.727083e-68 | -8.615850e-47 |
| Msa0604350 | Msa1402790 | 0.817751 | 2.802636e-52 | -8.615850e-47 |
| Msa0604350 | Msa1404000 | 0.827294 | 1.693784e-54 | -8.615850e-47 |
| Msa0604350 | Msa1408780 | 0.825249 | 5.196172e-54 | -8.615850e-47 |
| Msa0604350 | Msa1415310 | 0.849215 | 3.730996e-60 | -8.615850e-47 |
| Msa0604350 | Msa1422180 | 0.846789 | 1.741947e-59 | -8.615850e-47 |
| Msa0604350 | Msa1433120 | 0.840304 | 9.424884e-58 | -8.615850e-47 |
| Msa0604350 | Msa1451190 | 0.840773 | 7.103005e-58 | -8.615850e-47 |
| Msa0604350 | Msa1451570 | 0.834990 | 2.176855e-56 | -8.615850e-47 |
| Msa0142220 | Msa0604350 | 0.844762 | 6.185394e-59 | -8.615850e-47 |
| Msa0145750 | Msa0604350 | 0.813366 | 2.654426e-51 | -8.615850e-47 |
| Msa0153910 | Msa0604350 | 0.804434 | 2.164610e-49 | -8.615850e-47 |
| Msa0197010 | Msa0604350 | 0.827480 | 1.528503e-54 | -8.615850e-47 |
| Msa0200000 | Msa0604350 | 0.859398 | 4.250803e-63 | -8.615850e-47 |
| Msa0214300 | Msa0604350 | 0.808466 | 3.054262e-50 | -8.615850e-47 |
| Msa0214380 | Msa0604350 | 0.801859 | 7.382013e-49 | -8.615850e-47 |
| Msa0227480 | Msa0604350 | 0.865037 | 7.894009e-65 | -8.615850e-47 |
| Msa0232850 | Msa0604350 | 0.823963 | 1.043525e-53 | -8.615850e-47 |
| Msa0365500 | Msa0604350 | 0.828276 | 9.834571e-55 | -8.615850e-47 |
| Msa0371730 | Msa0604350 | 0.802978 | 4.341196e-49 | -8.615850e-47 |
| Msa0384800 | Msa0604350 | 0.820686 | 6.015729e-53 | -8.615850e-47 |
| Msa0384890 | Msa0604350 | 0.810848 | 9.399901e-51 | -8.615850e-47 |
| Msa0407750 | Msa0604350 | 0.825584 | 4.327953e-54 | -8.615850e-47 |
| Msa0414410 | Msa0604350 | 0.817919 | 2.568010e-52 | -8.615850e-47 |
| Msa0414420 | Msa0604350 | 0.854257 | 1.387979e-61 | -8.615850e-47 |
| Msa0424550 | Msa0604350 | 0.808418 | 3.128211e-50 | -8.615850e-47 |
| Msa0432290 | Msa0604350 | 0.816056 | 6.731133e-52 | -8.615850e-47 |
| Msa0435230 | Msa0604350 | 0.813548 | 2.421340e-51 | -8.615850e-47 |
| Msa0436780 | Msa0604350 | 0.825101 | 5.632124e-54 | -8.615850e-47 |
| Msa0436800 | Msa0604350 | 0.822751 | 2.002823e-53 | -8.615850e-47 |
| Msa0438620 | Msa0604350 | 0.809264 | 2.061620e-50 | -8.615850e-47 |
| Msa0444130 | Msa0604350 | 0.802462 | 5.546738e-49 | -8.615850e-47 |
| Msa0450000 | Msa0604350 | 0.834236 | 3.368637e-56 | -8.615850e-47 |
| Msa0452900 | Msa0604350 | 0.869176 | 3.766779e-66 | -8.615850e-47 |
| Msa0453120 | Msa0604350 | 0.824676 | 7.095100e-54 | -8.615850e-47 |
| Msa0454370 | Msa0604350 | 0.826682 | 2.372286e-54 | -8.615850e-47 |
| Msa0454910 | Msa0604350 | 0.806191 | 9.272097e-50 | -8.615850e-47 |
| Msa0456840 | Msa0604350 | 0.805583 | 1.244531e-49 | -8.615850e-47 |
| Msa0459160 | Msa0604350 | 0.804104 | 2.535890e-49 | -8.615850e-47 |
| Msa0479340 | Msa0604350 | 0.848214 | 7.068232e-60 | -8.615850e-47 |
| Msa0482620 | Msa0604350 | 0.805837 | 1.100812e-49 | -8.615850e-47 |
| Msa0247260 | Msa0604350 | 0.801299 | 9.615476e-49 | -8.615850e-47 |
| Msa0251320 | Msa0604350 | 0.811684 | 6.188423e-51 | -8.615850e-47 |
| Msa0256440 | Msa0604350 | 0.813496 | 2.485839e-51 | -8.615850e-47 |
| Msa0267000 | Msa0604350 | 0.852432 | 4.633475e-61 | -8.615850e-47 |
| Msa0267010 | Msa0604350 | 0.845996 | 2.865186e-59 | -8.615850e-47 |
| Msa0285810 | Msa0604350 | 0.805021 | 1.632536e-49 | -8.615850e-47 |
| Msa0290870 | Msa0604350 | 0.819436 | 1.162768e-52 | -8.615850e-47 |
| Msa0294030 | Msa0604350 | 0.803085 | 4.124680e-49 | -8.615850e-47 |
| Msa0295770 | Msa0604350 | 0.814460 | 1.523773e-51 | -8.615850e-47 |
| Msa0304170 | Msa0604350 | 0.805634 | 1.214061e-49 | -8.615850e-47 |
| Msa0305190 | Msa0604350 | 0.804428 | 2.170955e-49 | -8.615850e-47 |
| Msa0306460 | Msa0604350 | 0.829968 | 3.824965e-55 | -8.615850e-47 |
| Msa0337900 | Msa0604350 | 0.800369 | 1.488362e-48 | -8.615850e-47 |
| Msa0342240 | Msa0604350 | 0.852471 | 4.517092e-61 | -8.615850e-47 |
| Msa0360510 | Msa0604350 | 0.847652 | 1.010161e-59 | -8.615850e-47 |
| Msa0362420 | Msa0604350 | 0.809779 | 1.598393e-50 | -8.615850e-47 |
| Msa0363300 | Msa0604350 | 0.806220 | 9.141665e-50 | -8.615850e-47 |
| Msa0485370 | Msa0604350 | 0.801766 | 7.711979e-49 | -8.615850e-47 |
| Msa0491590 | Msa0604350 | 0.850752 | 1.386148e-60 | -8.615850e-47 |
| Msa0502340 | Msa0604350 | 0.806603 | 7.590608e-50 | -8.615850e-47 |
| Msa0506270 | Msa0604350 | 0.832240 | 1.058093e-55 | -8.615850e-47 |
| Msa0534540 | Msa0604350 | 0.809978 | 1.448290e-50 | -8.615850e-47 |
| Msa0564890 | Msa0604350 | 0.827582 | 1.444461e-54 | -8.615850e-47 |
| Msa0596150 | Msa0604350 | 0.866998 | 1.892304e-65 | -8.615850e-47 |
| Msa0598780 | Msa0604350 | 0.826760 | 2.272534e-54 | -8.615850e-47 |
| Msa0600700 | Msa0604350 | 0.810942 | 8.969458e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604350 | MtrunA17_Chr3g0131781 | 79.861 | 144 | 7 | 2 | 1 | 122 | 1 | 144 | 2.60e-68 | 206 |
| Msa0604350 | MtrunA17_Chr8g0385941 | 42.442 | 172 | 42 | 9 | 1 | 121 | 1 | 166 | 1.05e-21 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 56 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATTCGATCTTGGTCTTT+TGG | 0.187350 | 4_2:-49889278 | None:intergenic |
| TGGTAGCTGGAAAGTGAAAA+AGG | 0.224871 | 4_2:+49889252 | Msa0604350:CDS |
| TCGTTGCTCCGCCGTTTATT+TGG | 0.233205 | 4_2:-49888987 | None:intergenic |
| AACACCGACGGTGTAATTAT+TGG | 0.331686 | 4_2:+49889232 | Msa0604350:CDS |
| CAAAAGACCAAGATCGAATT+GGG | 0.359194 | 4_2:+49889279 | Msa0604350:CDS |
| CCAAAAGACCAAGATCGAAT+TGG | 0.364115 | 4_2:+49889278 | Msa0604350:CDS |
| AAATCATGGCGATTCGGCTT+CGG | 0.384660 | 4_2:+49889126 | Msa0604350:CDS |
| GGTCTCCGATGTCGCCTAAT+CGG | 0.413080 | 4_2:-49889071 | None:intergenic |
| CCGCCGTTTATTTGGACCTC+CGG | 0.440203 | 4_2:-49888979 | None:intergenic |
| TTCGGCTTCGGCAACGTCTC+AGG | 0.441191 | 4_2:+49889138 | Msa0604350:CDS |
| CCACCGGAGGTCCAAATAAA+CGG | 0.460030 | 4_2:+49888976 | Msa0604350:CDS |
| GAAGAAACCCAATTCGATCT+TGG | 0.472216 | 4_2:-49889286 | None:intergenic |
| TTCGATCCGTGAGGTTCTGA+AGG | 0.475990 | 4_2:-49889027 | None:intergenic |
| AGTTCAAAATCATGGCGATT+CGG | 0.480998 | 4_2:+49889120 | Msa0604350:CDS |
| CGCCTAATCGGACGCTGGGT+CGG | 0.497118 | 4_2:-49889059 | None:intergenic |
| GCGGCGAGGGTGGGAATCAG+AGG | 0.498456 | 4_2:-49889097 | None:intergenic |
| CTCGCCGCAGTTCAAAATCA+TGG | 0.500043 | 4_2:+49889112 | Msa0604350:CDS |
| AATAATTACACCGTCGGTGT+TGG | 0.505458 | 4_2:-49889230 | None:intergenic |
| TTTATTTGGACCTCCGGTGG+CGG | 0.518429 | 4_2:-49888973 | None:intergenic |
| GTTTCTTCGCGAATTGAAGA+AGG | 0.522515 | 4_2:+49889301 | Msa0604350:CDS |
| GATGTCGCCTAATCGGACGC+TGG | 0.529379 | 4_2:-49889064 | None:intergenic |
| ACGGTGTAATTATTGGTAGC+TGG | 0.534282 | 4_2:+49889239 | Msa0604350:CDS |
| ATGTCGCCTAATCGGACGCT+GGG | 0.537206 | 4_2:-49889063 | None:intergenic |
| AATGGAAGAGGTTCCGCCAC+CGG | 0.544579 | 4_2:+49888960 | None:intergenic |
| TCGATCCGTGAGGTTCTGAA+GGG | 0.559702 | 4_2:-49889026 | None:intergenic |
| CACCGACCCAGCGTCCGATT+AGG | 0.565703 | 4_2:+49889057 | Msa0604350:CDS |
| CCGTTTATTTGGACCTCCGG+TGG | 0.575464 | 4_2:-49888976 | None:intergenic |
| CGGCGAGGGTGGGAATCAGA+GGG | 0.591797 | 4_2:-49889096 | None:intergenic |
| GAGGGTGGGAATCAGAGGGT+TGG | 0.602586 | 4_2:-49889092 | None:intergenic |
| GAAACGGAAGAAAATGGAAG+AGG | 0.606203 | 4_2:+49888948 | None:intergenic |
| GGAAGAGGTTCCGCCACCGG+AGG | 0.617458 | 4_2:+49888963 | Msa0604350:CDS |
| CGATCCGTGAGGTTCTGAAG+GGG | 0.626502 | 4_2:-49889025 | None:intergenic |
| AGCGTCCGATTAGGCGACAT+CGG | 0.639876 | 4_2:+49889066 | Msa0604350:CDS |
| GATCCGTGAGGTTCTGAAGG+GGG | 0.654909 | 4_2:-49889024 | None:intergenic |
| GCTACCAATAATTACACCGT+CGG | 0.667969 | 4_2:-49889236 | None:intergenic |
| GACGTAGAAACCAACACCGA+CGG | 0.675808 | 4_2:+49889220 | Msa0604350:intron |
| CAGAACCTCACGGATCGAAG+CGG | 0.686667 | 4_2:+49889031 | Msa0604350:CDS |
| TGTTGCCGCTTCGATCCGTG+AGG | 0.714492 | 4_2:-49889036 | None:intergenic |
| CCGGAGGTCCAAATAAACGG+CGG | 0.738172 | 4_2:+49888979 | Msa0604350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATTTTGAAGGTGATAATT+CGG | + | chr4_2:49889357-49889376 | Msa0604350:CDS | 25.0% |
| ! | AACCAGTTCAAAAAAAAATC+TGG | + | chr4_2:49889389-49889408 | Msa0604350:CDS | 25.0% |
| !!! | AACCAGATTTTTTTTTGAAC+TGG | - | chr4_2:49889394-49889413 | None:intergenic | 25.0% |
| ! | CTGGTTAAAAATAAGTAAAC+CGG | + | chr4_2:49889408-49889427 | Msa0604350:CDS | 25.0% |
| ! | TCCTTTGACTAATTTGACTT+CGG | + | chr4_2:49889179-49889198 | Msa0604350:intron | 30.0% |
| ! | GATTTGTATCGAGATTTTGA+AGG | + | chr4_2:49889346-49889365 | Msa0604350:CDS | 30.0% |
| !! | GATTTTGAAGGTGATAATTC+GGG | + | chr4_2:49889358-49889377 | Msa0604350:CDS | 30.0% |
| AGTTCAAAATCATGGCGATT+CGG | + | chr4_2:49889120-49889139 | Msa0604350:CDS | 35.0% | |
| ACCGAAGTCAAATTAGTCAA+AGG | - | chr4_2:49889183-49889202 | None:intergenic | 35.0% | |
| CAAAAGACCAAGATCGAATT+GGG | + | chr4_2:49889279-49889298 | Msa0604350:CDS | 35.0% | |
| ! | ATCGCCATGATTTTGAACTG+CGG | - | chr4_2:49889119-49889138 | None:intergenic | 40.0% |
| TCTACGTCTTCCATCGAAAT+CGG | - | chr4_2:49889208-49889227 | None:intergenic | 40.0% | |
| AATAATTACACCGTCGGTGT+TGG | - | chr4_2:49889233-49889252 | None:intergenic | 40.0% | |
| AACACCGACGGTGTAATTAT+TGG | + | chr4_2:49889232-49889251 | Msa0604350:CDS | 40.0% | |
| GCTACCAATAATTACACCGT+CGG | - | chr4_2:49889239-49889258 | None:intergenic | 40.0% | |
| ! | ACGGTGTAATTATTGGTAGC+TGG | + | chr4_2:49889239-49889258 | Msa0604350:CDS | 40.0% |
| TGGTAGCTGGAAAGTGAAAA+AGG | + | chr4_2:49889252-49889271 | Msa0604350:CDS | 40.0% | |
| GGTAGCTGGAAAGTGAAAAA+GGG | + | chr4_2:49889253-49889272 | Msa0604350:CDS | 40.0% | |
| !! | CCAATTCGATCTTGGTCTTT+TGG | - | chr4_2:49889281-49889300 | None:intergenic | 40.0% |
| CCAAAAGACCAAGATCGAAT+TGG | + | chr4_2:49889278-49889297 | Msa0604350:CDS | 40.0% | |
| GAAGAAACCCAATTCGATCT+TGG | - | chr4_2:49889289-49889308 | None:intergenic | 40.0% | |
| GTTTCTTCGCGAATTGAAGA+AGG | + | chr4_2:49889301-49889320 | Msa0604350:CDS | 40.0% | |
| ! | ATGATTTTGAACTGCGGCGA+GGG | - | chr4_2:49889113-49889132 | None:intergenic | 45.0% |
| ! | AAATCATGGCGATTCGGCTT+CGG | + | chr4_2:49889126-49889145 | Msa0604350:CDS | 45.0% |
| ACTTCGGTTTCCGATTTCGA+TGG | + | chr4_2:49889195-49889214 | Msa0604350:intron | 45.0% | |
| TTTATTTGGACCTCCGGTGG+CGG | - | chr4_2:49888976-49888995 | None:intergenic | 50.0% | |
| CCACCGGAGGTCCAAATAAA+CGG | + | chr4_2:49888976-49888995 | Msa0604350:CDS | 50.0% | |
| TCGTTGCTCCGCCGTTTATT+TGG | - | chr4_2:49888990-49889009 | None:intergenic | 50.0% | |
| !! | TCGATCCGTGAGGTTCTGAA+GGG | - | chr4_2:49889029-49889048 | None:intergenic | 50.0% |
| ! | TTCGATCCGTGAGGTTCTGA+AGG | - | chr4_2:49889030-49889049 | None:intergenic | 50.0% |
| ! | CATGATTTTGAACTGCGGCG+AGG | - | chr4_2:49889114-49889133 | None:intergenic | 50.0% |
| CTCGCCGCAGTTCAAAATCA+TGG | + | chr4_2:49889112-49889131 | Msa0604350:CDS | 50.0% | |
| GTCAAAGGACGAGTCTTCGA+GGG | - | chr4_2:49889168-49889187 | None:intergenic | 50.0% | |
| AGTCAAAGGACGAGTCTTCG+AGG | - | chr4_2:49889169-49889188 | None:intergenic | 50.0% | |
| GACGTAGAAACCAACACCGA+CGG | + | chr4_2:49889220-49889239 | Msa0604350:intron | 50.0% | |
| CCGTTTATTTGGACCTCCGG+TGG | - | chr4_2:49888979-49888998 | None:intergenic | 55.0% | |
| CCGCCGTTTATTTGGACCTC+CGG | - | chr4_2:49888982-49889001 | None:intergenic | 55.0% | |
| CCGGAGGTCCAAATAAACGG+CGG | + | chr4_2:49888979-49888998 | Msa0604350:CDS | 55.0% | |
| CTACCCCCTTCAGAACCTCA+CGG | + | chr4_2:49889021-49889040 | Msa0604350:CDS | 55.0% | |
| !! | GATCCGTGAGGTTCTGAAGG+GGG | - | chr4_2:49889027-49889046 | None:intergenic | 55.0% |
| !! | CGATCCGTGAGGTTCTGAAG+GGG | - | chr4_2:49889028-49889047 | None:intergenic | 55.0% |
| CAGAACCTCACGGATCGAAG+CGG | + | chr4_2:49889031-49889050 | Msa0604350:CDS | 55.0% | |
| ATGTCGCCTAATCGGACGCT+GGG | - | chr4_2:49889066-49889085 | None:intergenic | 55.0% | |
| AGCGTCCGATTAGGCGACAT+CGG | + | chr4_2:49889066-49889085 | Msa0604350:CDS | 55.0% | |
| GGTCTCCGATGTCGCCTAAT+CGG | - | chr4_2:49889074-49889093 | None:intergenic | 55.0% | |
| ! | TTTTGAACTGCGGCGAGGGT+GGG | - | chr4_2:49889109-49889128 | None:intergenic | 55.0% |
| ! | ATTTTGAACTGCGGCGAGGG+TGG | - | chr4_2:49889110-49889129 | None:intergenic | 55.0% |
| ! | TGTTGCCGCTTCGATCCGTG+AGG | - | chr4_2:49889039-49889058 | None:intergenic | 60.0% |
| GATGTCGCCTAATCGGACGC+TGG | - | chr4_2:49889067-49889086 | None:intergenic | 60.0% | |
| GAGGGTGGGAATCAGAGGGT+TGG | - | chr4_2:49889095-49889114 | None:intergenic | 60.0% | |
| TTCGGCTTCGGCAACGTCTC+AGG | + | chr4_2:49889138-49889157 | Msa0604350:CDS | 60.0% | |
| CACCGACCCAGCGTCCGATT+AGG | + | chr4_2:49889057-49889076 | Msa0604350:CDS | 65.0% | |
| CGCCTAATCGGACGCTGGGT+CGG | - | chr4_2:49889062-49889081 | None:intergenic | 65.0% | |
| CGGCGAGGGTGGGAATCAGA+GGG | - | chr4_2:49889099-49889118 | None:intergenic | 65.0% | |
| GGAAGAGGTTCCGCCACCGG+AGG | + | chr4_2:49888963-49888982 | Msa0604350:CDS | 70.0% | |
| GCGGCGAGGGTGGGAATCAG+AGG | - | chr4_2:49889100-49889119 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 49888961 | 49889435 | 49888961 | ID=Msa0604350;Name=Msa0604350 |
| chr4_2 | mRNA | 49888961 | 49889435 | 49888961 | ID=Msa0604350-mRNA-1;Parent=Msa0604350;Name=Msa0604350-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|2|0|137 |
| chr4_2 | exon | 49888961 | 49889159 | 49888961 | ID=Msa0604350-mRNA-1:exon:11566;Parent=Msa0604350-mRNA-1 |
| chr4_2 | exon | 49889221 | 49889435 | 49889221 | ID=Msa0604350-mRNA-1:exon:11567;Parent=Msa0604350-mRNA-1 |
| chr4_2 | CDS | 49888961 | 49889159 | 49888961 | ID=Msa0604350-mRNA-1:cds;Parent=Msa0604350-mRNA-1 |
| chr4_2 | CDS | 49889221 | 49889435 | 49889221 | ID=Msa0604350-mRNA-1:cds;Parent=Msa0604350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
