Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961580 | sp|B3H5A8|RVE7_ARATH | 43.791 | 306 | 104 | 9 | 46 | 345 | 65 | 308 | 7.02e-57 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961580 | A0A072UBN0 | 95.329 | 471 | 18 | 2 | 1 | 471 | 1 | 467 | 0.0 | 877 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0961580 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026280 | Msa0961580 | 0.828883 | 7.019187e-55 | -8.615850e-47 |
| Msa0074140 | Msa0961580 | 0.860802 | 1.601725e-63 | -8.615850e-47 |
| Msa0074180 | Msa0961580 | 0.856525 | 3.032966e-62 | -8.615850e-47 |
| Msa0116590 | Msa0961580 | 0.846208 | 2.509967e-59 | -8.615850e-47 |
| Msa0689940 | Msa0961580 | 0.804323 | 2.282468e-49 | -8.615850e-47 |
| Msa0792480 | Msa0961580 | 0.824005 | 1.020262e-53 | -8.615850e-47 |
| Msa0415950 | Msa0961580 | 0.802234 | 6.180544e-49 | -8.615850e-47 |
| Msa0480250 | Msa0961580 | 0.802681 | 4.999068e-49 | -8.615850e-47 |
| Msa0264960 | Msa0961580 | 0.805175 | 1.515727e-49 | -8.615850e-47 |
| Msa0303010 | Msa0961580 | 0.805038 | 1.618683e-49 | -8.615850e-47 |
| Msa0491730 | Msa0961580 | 0.803400 | 3.549711e-49 | -8.615850e-47 |
| Msa0896380 | Msa0961580 | 0.997243 | 3.402528e-239 | -8.615850e-47 |
| Msa0961580 | Msa1130820 | 0.812410 | 4.299250e-51 | -8.615850e-47 |
| Msa0961580 | Msa1406670 | 0.814007 | 1.917975e-51 | -8.615850e-47 |
| Msa0961580 | Msa1448870 | 0.813342 | 2.686721e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961580 | MtrunA17_Chr6g0481061 | 95.329 | 471 | 18 | 2 | 1 | 471 | 1 | 467 | 0.0 | 877 |
| Msa0961580 | MtrunA17_Chr3g0109791 | 50.204 | 245 | 107 | 5 | 38 | 280 | 38 | 269 | 1.04e-55 | 189 |
| Msa0961580 | MtrunA17_Chr5g0433851 | 46.800 | 250 | 119 | 5 | 35 | 280 | 21 | 260 | 5.58e-47 | 167 |
| Msa0961580 | MtrunA17_Chr1g0181771 | 56.250 | 112 | 38 | 3 | 38 | 149 | 28 | 128 | 1.75e-34 | 130 |
| Msa0961580 | MtrunA17_Chr6g0469431 | 54.783 | 115 | 41 | 4 | 46 | 158 | 39 | 144 | 6.00e-33 | 124 |
| Msa0961580 | MtrunA17_Chr8g0348391 | 60.638 | 94 | 29 | 2 | 46 | 139 | 53 | 138 | 1.07e-32 | 127 |
| Msa0961580 | MtrunA17_Chr7g0276421 | 68.269 | 104 | 31 | 1 | 38 | 139 | 7 | 110 | 1.02e-31 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961580 | AT1G18330.1 | 40.616 | 357 | 138 | 12 | 46 | 395 | 39 | 328 | 5.47e-58 | 195 |
| Msa0961580 | AT1G18330.2 | 43.791 | 306 | 104 | 9 | 46 | 345 | 65 | 308 | 7.13e-58 | 196 |
| Msa0961580 | AT5G17300.1 | 66.250 | 160 | 43 | 3 | 40 | 199 | 38 | 186 | 3.00e-52 | 181 |
| Msa0961580 | AT3G10113.1 | 66.667 | 135 | 36 | 1 | 46 | 180 | 54 | 179 | 9.49e-46 | 162 |
| Msa0961580 | AT5G37260.1 | 55.814 | 172 | 61 | 3 | 33 | 204 | 12 | 168 | 1.34e-44 | 158 |
| Msa0961580 | AT3G09600.1 | 60.638 | 94 | 29 | 2 | 46 | 139 | 32 | 117 | 1.84e-32 | 125 |
| Msa0961580 | AT3G09600.7 | 60.638 | 94 | 29 | 2 | 46 | 139 | 32 | 117 | 1.84e-32 | 125 |
| Msa0961580 | AT3G09600.4 | 60.638 | 94 | 29 | 2 | 46 | 139 | 32 | 117 | 1.97e-32 | 125 |
| Msa0961580 | AT3G09600.2 | 60.638 | 94 | 29 | 2 | 46 | 139 | 32 | 117 | 2.01e-32 | 125 |
| Msa0961580 | AT3G09600.6 | 60.638 | 94 | 29 | 2 | 46 | 139 | 32 | 117 | 2.01e-32 | 125 |
| Msa0961580 | AT5G52660.1 | 59.184 | 98 | 32 | 2 | 42 | 139 | 57 | 146 | 1.33e-31 | 124 |
| Msa0961580 | AT5G52660.2 | 59.184 | 98 | 32 | 2 | 42 | 139 | 57 | 146 | 1.41e-31 | 124 |
| Msa0961580 | AT1G01520.1 | 59.574 | 94 | 30 | 2 | 46 | 139 | 50 | 135 | 5.89e-31 | 121 |
| Msa0961580 | AT1G01520.3 | 59.574 | 94 | 30 | 2 | 46 | 139 | 50 | 135 | 7.35e-31 | 121 |
| Msa0961580 | AT1G01520.2 | 59.574 | 94 | 30 | 2 | 46 | 139 | 50 | 135 | 7.88e-31 | 120 |
| Msa0961580 | AT1G01520.4 | 59.574 | 94 | 30 | 2 | 46 | 139 | 50 | 135 | 7.88e-31 | 120 |
| Msa0961580 | AT1G01060.4 | 58.491 | 106 | 42 | 1 | 35 | 138 | 2 | 107 | 1.51e-30 | 125 |
| Msa0961580 | AT1G01060.8 | 58.491 | 106 | 42 | 1 | 35 | 138 | 2 | 107 | 1.62e-30 | 125 |
| Msa0961580 | AT1G01060.2 | 58.491 | 106 | 42 | 1 | 35 | 138 | 2 | 107 | 1.62e-30 | 125 |
| Msa0961580 | AT1G01060.3 | 58.491 | 106 | 42 | 1 | 35 | 138 | 2 | 107 | 1.62e-30 | 125 |
| Msa0961580 | AT1G01060.1 | 58.491 | 106 | 42 | 1 | 35 | 138 | 2 | 107 | 1.62e-30 | 125 |
| Msa0961580 | AT1G01060.7 | 58.491 | 106 | 42 | 1 | 35 | 138 | 2 | 107 | 1.62e-30 | 125 |
| Msa0961580 | AT4G01280.1 | 60.638 | 94 | 29 | 2 | 46 | 139 | 48 | 133 | 1.64e-30 | 120 |
| Msa0961580 | AT5G02840.3 | 47.015 | 134 | 47 | 4 | 46 | 163 | 37 | 162 | 1.73e-30 | 120 |
| Msa0961580 | AT4G01280.2 | 60.638 | 94 | 29 | 2 | 46 | 139 | 48 | 133 | 1.74e-30 | 120 |
| Msa0961580 | AT5G02840.4 | 47.015 | 134 | 47 | 4 | 46 | 163 | 37 | 162 | 1.82e-30 | 119 |
| Msa0961580 | AT5G02840.1 | 47.015 | 134 | 47 | 4 | 46 | 163 | 37 | 162 | 1.96e-30 | 120 |
| Msa0961580 | AT5G02840.2 | 47.015 | 134 | 47 | 4 | 46 | 163 | 37 | 162 | 1.96e-30 | 120 |
| Msa0961580 | AT5G02840.5 | 47.015 | 134 | 47 | 4 | 46 | 163 | 37 | 162 | 2.80e-30 | 119 |
| Msa0961580 | AT2G46830.1 | 63.529 | 85 | 31 | 0 | 38 | 122 | 5 | 89 | 3.51e-30 | 124 |
| Msa0961580 | AT5G17300.2 | 59.322 | 118 | 37 | 3 | 82 | 199 | 5 | 111 | 1.12e-21 | 95.9 |
| Msa0961580 | AT3G09600.3 | 50.769 | 65 | 24 | 2 | 75 | 139 | 5 | 61 | 6.97e-15 | 74.7 |
| Msa0961580 | AT3G09600.8 | 50.769 | 65 | 24 | 2 | 75 | 139 | 5 | 61 | 6.97e-15 | 74.7 |
| Msa0961580 | AT3G09600.5 | 50.769 | 65 | 24 | 2 | 75 | 139 | 5 | 61 | 9.91e-15 | 73.9 |
| Msa0961580 | AT3G09600.9 | 50.769 | 65 | 24 | 2 | 75 | 139 | 5 | 61 | 9.91e-15 | 73.9 |
Find 141 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCTCCAAATTCTTCATC+TGG | 0.203695 | 6_3:+83665774 | Msa0961580:five_prime_UTR |
| CTGATATTGTTAGGGTGTTC+TGG | 0.237816 | 6_3:+83666148 | Msa0961580:five_prime_UTR |
| CTCTTCCTCCTCAGATGGTT+TGG | 0.248334 | 6_3:-83668759 | None:intergenic |
| CATATTTGCAGCATCTTCTT+TGG | 0.255626 | 6_3:-83669241 | None:intergenic |
| TCGAATCTGAACTGCAGTTT+TGG | 0.267753 | 6_3:-83668178 | None:intergenic |
| CCTCAGATGGTTTGGATGTC+TGG | 0.272930 | 6_3:-83668751 | None:intergenic |
| CTCTGCAACTGACAGGTTAA+TGG | 0.279753 | 6_3:-83668567 | None:intergenic |
| GTTTGGTCGAACACTATCTA+TGG | 0.282785 | 6_3:+83669287 | Msa0961580:CDS |
| AGTGACCCAGATGAAGAATT+TGG | 0.283993 | 6_3:-83665780 | None:intergenic |
| AATGCGCAACTTTACCATTA+TGG | 0.288861 | 6_3:+83669511 | Msa0961580:CDS |
| TTCTTAATCCTGTGCCTCTT+AGG | 0.290915 | 6_3:+83669586 | Msa0961580:CDS |
| AAAAGTACTTCCTGAGAATA+AGG | 0.294127 | 6_3:+83669923 | Msa0961580:three_prime_UTR |
| CTTTGTTTAGTGATGGTATA+CGG | 0.298682 | 6_3:-83667967 | None:intergenic |
| GATGAAAATTCTTTAATTGC+TGG | 0.298848 | 6_3:+83669813 | Msa0961580:CDS |
| GGAGATGTTTCTGATTCATT+TGG | 0.303011 | 6_3:-83668542 | None:intergenic |
| CACTGAATCAGTTTGCGATA+TGG | 0.310791 | 6_3:+83669662 | Msa0961580:CDS |
| TGGTGGCAGCTGATATTGTT+AGG | 0.340024 | 6_3:+83666139 | Msa0961580:intron |
| CACCGACTCAAAACCACTTA+TGG | 0.354311 | 6_3:+83668811 | Msa0961580:CDS |
| GTTGCGCATTCGCCGACATA+TGG | 0.355277 | 6_3:-83669498 | None:intergenic |
| ACCCTCTTCCAGATTTCTTA+AGG | 0.359010 | 6_3:-83669758 | None:intergenic |
| AATCTTCATGCAGAACATAT+AGG | 0.364568 | 6_3:+83668153 | Msa0961580:intron |
| GAAAACAACAAAAGATTTGC+TGG | 0.370394 | 6_3:-83670112 | None:intergenic |
| GAGATGTTTCTGATTCATTT+GGG | 0.373672 | 6_3:-83668541 | None:intergenic |
| GGAGTTGTCCTTAAGAAATC+TGG | 0.375864 | 6_3:+83669750 | Msa0961580:CDS |
| AGCTATCAACTCTAATGAAA+TGG | 0.384116 | 6_3:+83669356 | Msa0961580:CDS |
| TTTGTTTGTGTCATAACAAT+TGG | 0.385084 | 6_3:+83670250 | Msa0961580:three_prime_UTR |
| ATCACTAGTATTAAGCTGTT+TGG | 0.389280 | 6_3:+83669270 | Msa0961580:CDS |
| GGTATGTCAATTGGCTGAAT+AGG | 0.403494 | 6_3:-83668443 | None:intergenic |
| TTCAGACTGTAATCCACCTT+TGG | 0.404938 | 6_3:-83667546 | None:intergenic |
| GGATGAAGGGGTTTCCTCTT+CGG | 0.405395 | 6_3:-83668476 | None:intergenic |
| ATCTCGGTGGTGCAAGAATT+AGG | 0.408707 | 6_3:-83668686 | None:intergenic |
| TCACTAAACAAAGGGAGAAA+TGG | 0.418116 | 6_3:+83667977 | Msa0961580:CDS |
| CTTGAGGCTTTGAAACTGTA+TGG | 0.421259 | 6_3:+83668024 | Msa0961580:CDS |
| AAATTCTTTAATTGCTGGCT+TGG | 0.424959 | 6_3:+83669818 | Msa0961580:CDS |
| CCTTGGTACAAACTCCATAA+TGG | 0.425270 | 6_3:-83669525 | None:intergenic |
| CCTTTCTCTTCCTCCTCAGA+TGG | 0.426336 | 6_3:-83668764 | None:intergenic |
| ATCTTCATGCAGAACATATA+GGG | 0.428042 | 6_3:+83668154 | Msa0961580:intron |
| TTCCTCTTCGGCCGAGGAGG+AGG | 0.434146 | 6_3:-83668464 | None:intergenic |
| CTGCTCACTTGAGCTCCATC+AGG | 0.436145 | 6_3:-83669453 | None:intergenic |
| GGACTTTCAGCACTGCCATC+AGG | 0.443949 | 6_3:-83668422 | None:intergenic |
| AAAATTGAGACTTACAAAAT+CGG | 0.443983 | 6_3:+83665855 | Msa0961580:five_prime_UTR |
| TGTACTATCTGCACTTGGTT+CGG | 0.448970 | 6_3:+83668613 | Msa0961580:CDS |
| GAGAATGAAGCAATGGAAGA+AGG | 0.450693 | 6_3:-83665748 | None:intergenic |
| TCAACTGATTTGCGAGGGTA+TGG | 0.453549 | 6_3:-83668497 | None:intergenic |
| GTTCAAGGCACTAAGTCAAC+TGG | 0.454976 | 6_3:+83667503 | Msa0961580:CDS |
| TCTCTCCAAATTCTTCATCT+GGG | 0.456099 | 6_3:+83665775 | Msa0961580:five_prime_UTR |
| TAAATCAGTTCCTTATTCTC+AGG | 0.457101 | 6_3:-83669933 | None:intergenic |
| TTTCTCCCTTTGTTTAGTGA+TGG | 0.457327 | 6_3:-83667974 | None:intergenic |
| CCGACATATGGATTCTCCTT+CGG | 0.459009 | 6_3:-83669486 | None:intergenic |
| CGAGGAGGAGGTATGTCAAT+TGG | 0.460852 | 6_3:-83668452 | None:intergenic |
| TGGATGATCTTGAGAAGGTT+GGG | 0.471398 | 6_3:+83669376 | Msa0961580:CDS |
| ATTGTTAGGGTGTTCTGGAT+TGG | 0.473286 | 6_3:+83666153 | Msa0961580:five_prime_UTR |
| TGAATGTAGGATCAAGTTCA+AGG | 0.473815 | 6_3:+83667488 | Msa0961580:intron |
| AGCTTAATACTAGTGATTTG+TGG | 0.477782 | 6_3:-83669264 | None:intergenic |
| GAAGATAATAGCAAGAGAAG+AGG | 0.482480 | 6_3:+83669617 | Msa0961580:CDS |
| CGGAAACAACCTTGCTCCCA+AGG | 0.482656 | 6_3:+83667601 | Msa0961580:CDS |
| GGTGGAAAGCTGGAAGGCCT+TGG | 0.485291 | 6_3:-83669542 | None:intergenic |
| ATTTGCGAGGGTATGGATGA+AGG | 0.487003 | 6_3:-83668490 | None:intergenic |
| ATCTTCAAACAAGGCCTAAG+AGG | 0.488954 | 6_3:-83669600 | None:intergenic |
| GCACTTGGTTCGGAAGCATT+CGG | 0.498985 | 6_3:+83668623 | Msa0961580:CDS |
| AGGGGTTTCCTCTTCGGCCG+AGG | 0.499231 | 6_3:-83668470 | None:intergenic |
| CATGGCATGAGGTGGAAAGC+TGG | 0.502566 | 6_3:-83669552 | None:intergenic |
| TATCATACCATGGCCATAAG+TGG | 0.502925 | 6_3:-83668824 | None:intergenic |
| TACTTGGTTGCAGGTTGTGC+GGG | 0.506493 | 6_3:+83668397 | Msa0961580:intron |
| CGTGGCTGGCGTCAAATTGA+AGG | 0.507871 | 6_3:+83668048 | Msa0961580:CDS |
| TTTGGAAGATTGAGTTTCCT+CGG | 0.510593 | 6_3:-83669223 | None:intergenic |
| GGTGGCAGCTGATATTGTTA+GGG | 0.511816 | 6_3:+83666140 | Msa0961580:intron |
| CAACAGGTGACAAGCTGACC+GGG | 0.515360 | 6_3:-83668712 | None:intergenic |
| ATTTGCTACAATGGAGACTA+AGG | 0.515528 | 6_3:+83666182 | Msa0961580:exon |
| TCAACAGGTGACAAGCTGAC+CGG | 0.517384 | 6_3:-83668713 | None:intergenic |
| TGAAACTGTATGGTCGTGGC+TGG | 0.519020 | 6_3:+83668034 | Msa0961580:CDS |
| CCATCTGAGGAGGAAGAGAA+AGG | 0.527813 | 6_3:+83668764 | Msa0961580:CDS |
| CAAGCTGACCGGGTGAATCT+CGG | 0.528860 | 6_3:-83668702 | None:intergenic |
| TTAAGAATTTGATGATTGCA+TGG | 0.529235 | 6_3:-83669570 | None:intergenic |
| ATGAAGCAATGGAAGAAGGT+TGG | 0.534604 | 6_3:-83665744 | None:intergenic |
| TGTCATTCTCTGCAACTGAC+AGG | 0.535506 | 6_3:-83668574 | None:intergenic |
| ATGGATGATCTTGAGAAGGT+TGG | 0.536503 | 6_3:+83669375 | Msa0961580:CDS |
| TTTGGTCGAACACTATCTAT+GGG | 0.537064 | 6_3:+83669288 | Msa0961580:CDS |
| GCAAGGTTGTTTCCGACAGA+AGG | 0.537798 | 6_3:-83667593 | None:intergenic |
| TTGCGAGGGTATGGATGAAG+GGG | 0.537852 | 6_3:-83668488 | None:intergenic |
| TTTGCGAGGGTATGGATGAA+GGG | 0.538270 | 6_3:-83668489 | None:intergenic |
| GTCCTTAAGAAATCTGGAAG+AGG | 0.539236 | 6_3:+83669756 | Msa0961580:CDS |
| TGGCTCTGAATTTGCTACAA+TGG | 0.539722 | 6_3:+83666173 | Msa0961580:exon |
| GTATACCATCACTAAACAAA+GGG | 0.540490 | 6_3:+83667969 | Msa0961580:CDS |
| GTAAAACAACCTTGGGAGCA+AGG | 0.542630 | 6_3:-83667610 | None:intergenic |
| AGAAAGAGAGAATGAAGCAA+TGG | 0.542681 | 6_3:-83665755 | None:intergenic |
| CTCAAAACCACTTATGGCCA+TGG | 0.544250 | 6_3:+83668817 | Msa0961580:CDS |
| TGACTCTTTCAAAGGACAGT+TGG | 0.545667 | 6_3:+83668517 | Msa0961580:CDS |
| ACCTCTGTACTATCTGCACT+TGG | 0.545955 | 6_3:+83668608 | Msa0961580:CDS |
| CTACTTGGTTGCAGGTTGTG+CGG | 0.548743 | 6_3:+83668396 | Msa0961580:intron |
| CTTGCTATTATCTTCAAACA+AGG | 0.551156 | 6_3:-83669609 | None:intergenic |
| AAACAAGGCCTAAGAGGCAC+AGG | 0.552171 | 6_3:-83669594 | None:intergenic |
| CTAGGCATGTGTACACCTGA+TGG | 0.552985 | 6_3:+83669438 | Msa0961580:CDS |
| GTCCGAGATTATTTCTTCCG+AGG | 0.553467 | 6_3:+83669206 | Msa0961580:CDS |
| GGTTTCCTCTTCGGCCGAGG+AGG | 0.557391 | 6_3:-83668467 | None:intergenic |
| AAATCAGTTGACTCTTTCAA+AGG | 0.561001 | 6_3:+83668509 | Msa0961580:CDS |
| TGAAAATGATGCTAAGTCGC+AGG | 0.563551 | 6_3:+83667565 | Msa0961580:CDS |
| TCCTTAAGAAATCTGGAAGA+GGG | 0.563781 | 6_3:+83669757 | Msa0961580:CDS |
| CATGATTGAATCAATGATTG+AGG | 0.571875 | 6_3:+83670178 | Msa0961580:three_prime_UTR |
| TTCCTCGGAAGAAATAATCT+CGG | 0.576521 | 6_3:-83669208 | None:intergenic |
| GAAGAGGAAAGCTCTTGCAC+TGG | 0.577825 | 6_3:+83669633 | Msa0961580:CDS |
| TACCTCCTCCTCGGCCGAAG+AGG | 0.581749 | 6_3:+83668462 | Msa0961580:CDS |
| CGTATACCATCACTAAACAA+AGG | 0.584691 | 6_3:+83667968 | Msa0961580:CDS |
| ATCGCAAACTGATTCAGTGT+TGG | 0.585409 | 6_3:-83669658 | None:intergenic |
| AAAAGAATTGAAAATCATAG+AGG | 0.586594 | 6_3:-83669990 | None:intergenic |
| TGCTGGCTTGGAAGAAAGAG+AGG | 0.586743 | 6_3:+83669830 | Msa0961580:CDS |
| ACTGTAATCCACCTTTGGAA+TGG | 0.588366 | 6_3:-83667541 | None:intergenic |
| GGGTTCTCAGAAGTCAATGA+AGG | 0.589070 | 6_3:+83669308 | Msa0961580:CDS |
| CCAGACATCCAAACCATCTG+AGG | 0.593425 | 6_3:+83668751 | Msa0961580:CDS |
| TCAATGATTGAGGTGCAAGA+AGG | 0.593527 | 6_3:+83670188 | Msa0961580:three_prime_UTR |
| CAGGTTGTGCGGGAACCTGA+TGG | 0.598426 | 6_3:+83668407 | Msa0961580:intron |
| TTGCACCACCGAGATTCACC+CGG | 0.599354 | 6_3:+83668694 | Msa0961580:CDS |
| CTTGATACAGAATTATCACT+AGG | 0.603577 | 6_3:+83669420 | Msa0961580:CDS |
| GCTTTGAAACTGTATGGTCG+TGG | 0.606371 | 6_3:+83668030 | Msa0961580:CDS |
| AGTAAGTGCCATTCCAAAGG+TGG | 0.606494 | 6_3:+83667533 | Msa0961580:CDS |
| GCAACTGACAGGTTAATGGA+TGG | 0.609719 | 6_3:-83668563 | None:intergenic |
| TGGACTCAGCTGAAATTACA+AGG | 0.613894 | 6_3:+83665878 | Msa0961580:five_prime_UTR |
| GCATGAGGTGGAAAGCTGGA+AGG | 0.615795 | 6_3:-83669548 | None:intergenic |
| GATGATTGCATGGCATGAGG+TGG | 0.625757 | 6_3:-83669560 | None:intergenic |
| AAGAGTCAACTGATTTGCGA+GGG | 0.626425 | 6_3:-83668502 | None:intergenic |
| ATTGAGACTTACAAAATCGG+TGG | 0.631164 | 6_3:+83665858 | Msa0961580:five_prime_UTR |
| GCTAGTAAGTGCCATTCCAA+AGG | 0.631426 | 6_3:+83667530 | Msa0961580:CDS |
| AGTGCAGATAGTACAGAGGT+TGG | 0.636802 | 6_3:-83668605 | None:intergenic |
| AAAGAGTCAACTGATTTGCG+AGG | 0.637562 | 6_3:-83668503 | None:intergenic |
| GACATCCAAACCATCTGAGG+AGG | 0.638275 | 6_3:+83668754 | Msa0961580:CDS |
| TGGAGCTCAAGTGAGCAGCA+TGG | 0.641800 | 6_3:+83669458 | Msa0961580:CDS |
| TCGCAGGATATACCTTCTGT+CGG | 0.642530 | 6_3:+83667581 | Msa0961580:CDS |
| CAATTGACATACCTCCTCCT+CGG | 0.655187 | 6_3:+83668453 | Msa0961580:CDS |
| AAGAATTAGGAGAAAGACAT+CGG | 0.655270 | 6_3:-83668673 | None:intergenic |
| TGAAATGGATGATCTTGAGA+AGG | 0.659901 | 6_3:+83669371 | Msa0961580:CDS |
| TTTGATGATTGCATGGCATG+AGG | 0.660991 | 6_3:-83669563 | None:intergenic |
| TGAGGTGCAAGAAGGAAACA+TGG | 0.663119 | 6_3:+83670196 | Msa0961580:three_prime_UTR |
| CCGAAGGAGAATCCATATGT+CGG | 0.663355 | 6_3:+83669486 | Msa0961580:CDS |
| CCATTATGGAGTTTGTACCA+AGG | 0.666026 | 6_3:+83669525 | Msa0961580:CDS |
| GAGCAGCATGGAACAACCGA+AGG | 0.671244 | 6_3:+83669470 | Msa0961580:CDS |
| TCATTTGCAAGATATTACAA+AGG | 0.671390 | 6_3:-83670032 | None:intergenic |
| CATACAGTTTCAAAGCCTCA+AGG | 0.678034 | 6_3:-83668023 | None:intergenic |
| GCTGGCTTGGAAGAAAGAGA+GGG | 0.682057 | 6_3:+83669831 | Msa0961580:CDS |
| AGAGCATCAAAAGTTCCTTG+AGG | 0.714656 | 6_3:+83668008 | Msa0961580:CDS |
| GCTGACCGGGTGAATCTCGG+TGG | 0.721988 | 6_3:-83668699 | None:intergenic |
| ACCAAGTGCAGATAGTACAG+AGG | 0.725278 | 6_3:-83668609 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTCAAATAATAAATTAATA+TGG | + | chr6_3:83666706-83666725 | Msa0961580:intron | 10.0% |
| !! | AACACTTAAATATTTAATTA+TGG | - | chr6_3:83667653-83667672 | None:intergenic | 10.0% |
| !! | TAAAGAAAATGAAGAAAAAA+TGG | - | chr6_3:83665909-83665928 | None:intergenic | 15.0% |
| !!! | ATTTCAAAACAATTTTTGTT+TGG | + | chr6_3:83665941-83665960 | Msa0961580:intron | 15.0% |
| !! | TTAAGATCAAAAACATAAAA+GGG | - | chr6_3:83666250-83666269 | None:intergenic | 15.0% |
| !! | ATTAAGATCAAAAACATAAA+AGG | - | chr6_3:83666251-83666270 | None:intergenic | 15.0% |
| !! | TAAAAAAGTTCTATAGAAAA+TGG | + | chr6_3:83666647-83666666 | Msa0961580:intron | 15.0% |
| !! | AAAGTAAAATTGAAACAAAA+GGG | - | chr6_3:83667907-83667926 | None:intergenic | 15.0% |
| !! | AAAAGTAAAATTGAAACAAA+AGG | - | chr6_3:83667908-83667927 | None:intergenic | 15.0% |
| !! | AAAATTGAGACTTACAAAAT+CGG | + | chr6_3:83665855-83665874 | Msa0961580:five_prime_UTR | 20.0% |
| !!! | TGCATTTTCTAAAAAAAGTA+AGG | + | chr6_3:83666273-83666292 | Msa0961580:intron | 20.0% |
| !!! | TTTTTCAGTTCATTGAATAA+CGG | + | chr6_3:83666395-83666414 | Msa0961580:intron | 20.0% |
| !!! | ATTTGTGTTTGTACTTTTTA+CGG | + | chr6_3:83666557-83666576 | Msa0961580:intron | 20.0% |
| !!! | TAGAGTATTTTAGTTTCATA+GGG | + | chr6_3:83666620-83666639 | Msa0961580:intron | 20.0% |
| !!! | TCTATAAGTTAACCTTATTT+AGG | - | chr6_3:83666985-83667004 | None:intergenic | 20.0% |
| !! | TGAAAATTGAAATAAGTTTC+AGG | - | chr6_3:83667934-83667953 | None:intergenic | 20.0% |
| !!! | AACTTATTTCAATTTTCAAC+AGG | + | chr6_3:83667936-83667955 | Msa0961580:intron | 20.0% |
| !!! | TGTAGATTTGGATTTTTAAT+TGG | + | chr6_3:83668282-83668301 | Msa0961580:intron | 20.0% |
| !!! | GATTTTTAATTGGACTTTAA+AGG | + | chr6_3:83668292-83668311 | Msa0961580:intron | 20.0% |
| !!! | ATATTCTTTGATTTAGCTTA+TGG | + | chr6_3:83668856-83668875 | Msa0961580:intron | 20.0% |
| !!! | AATAATTTATGACACTGTTT+TGG | + | chr6_3:83668948-83668967 | Msa0961580:intron | 20.0% |
| !!! | TATAGAAATAATTTGTACAC+AGG | + | chr6_3:83669093-83669112 | Msa0961580:intron | 20.0% |
| !! | ATTTCAAAACTAGTAAGATA+TGG | - | chr6_3:83669166-83669185 | None:intergenic | 20.0% |
| !! | ATGGACATTGTAAAAAAATA+TGG | - | chr6_3:83669891-83669910 | None:intergenic | 20.0% |
| !!! | TACTTTTGACAAAAACAAAA+TGG | - | chr6_3:83669910-83669929 | None:intergenic | 20.0% |
| !! | AAAAGAATTGAAAATCATAG+AGG | - | chr6_3:83669993-83670012 | None:intergenic | 20.0% |
| !! | TGATACAGCAAAAAAATTAT+TGG | - | chr6_3:83670061-83670080 | None:intergenic | 20.0% |
| !!! | ATTTTACAGTTCAATCAAAT+TGG | + | chr6_3:83670080-83670099 | Msa0961580:three_prime_UTR | 20.0% |
| !! | TTGATATGTGATCTTTCTTT+TGG | + | chr6_3:83666105-83666124 | Msa0961580:intron | 25.0% |
| !!! | CATAAAAGGGTATTCAAAAA+AGG | - | chr6_3:83666237-83666256 | None:intergenic | 25.0% |
| !! | CTCAACAAAAATATCTTTTC+AGG | + | chr6_3:83666318-83666337 | Msa0961580:intron | 25.0% |
| ! | GATTAAATAACTGATGTATC+TGG | + | chr6_3:83666347-83666366 | Msa0961580:intron | 25.0% |
| ! | GAACCTGAAAAAAGATTATT+TGG | + | chr6_3:83666441-83666460 | Msa0961580:intron | 25.0% |
| !!! | CAACCAAATAATCTTTTTTC+AGG | - | chr6_3:83666447-83666466 | None:intergenic | 25.0% |
| !!! | GTAGAGTATTTTAGTTTCAT+AGG | + | chr6_3:83666619-83666638 | Msa0961580:intron | 25.0% |
| ! | AAGTTCTATAGAAAATGGAT+TGG | + | chr6_3:83666652-83666671 | Msa0961580:intron | 25.0% |
| ! | GTTGAAATTGTTAAATCTTC+TGG | + | chr6_3:83666889-83666908 | Msa0961580:intron | 25.0% |
| !! | AATTGTTAAATCTTCTGGTT+CGG | + | chr6_3:83666894-83666913 | Msa0961580:intron | 25.0% |
| ! | TACATGAAAATTATCAACTG+AGG | - | chr6_3:83667090-83667109 | None:intergenic | 25.0% |
| ! | CTGAAATATCACTGAATATT+TGG | + | chr6_3:83667136-83667155 | Msa0961580:intron | 25.0% |
| ! | AAACCAAAAGATAAAGACAA+GGG | - | chr6_3:83667423-83667442 | None:intergenic | 25.0% |
| !!! | TCAATTTTTTGTTGTCGAAA+CGG | + | chr6_3:83667442-83667461 | Msa0961580:intron | 25.0% |
| !! | ATTTCAATTTTCAACAGGTT+AGG | + | chr6_3:83667941-83667960 | Msa0961580:intron | 25.0% |
| ! | TTATATCTAACTAGAAGACA+TGG | - | chr6_3:83668124-83668143 | None:intergenic | 25.0% |
| ! | GAAGGTTATAAATGTAGATT+TGG | + | chr6_3:83668270-83668289 | Msa0961580:intron | 25.0% |
| !! | TTAATTGGACTTTAAAGGAA+AGG | + | chr6_3:83668297-83668316 | Msa0961580:intron | 25.0% |
| ! | AAAACTAGTAAGATATGGTT+TGG | - | chr6_3:83669161-83669180 | None:intergenic | 25.0% |
| !! | TTAAGAATTTGATGATTGCA+TGG | - | chr6_3:83669573-83669592 | None:intergenic | 25.0% |
| !!! | TTTTTGAGTTTGAGAATCAT+CGG | - | chr6_3:83669718-83669737 | None:intergenic | 25.0% |
| !! | TCAGCTAAACATCTTTTATA+TGG | - | chr6_3:83669789-83669808 | None:intergenic | 25.0% |
| ! | GATGAAAATTCTTTAATTGC+TGG | + | chr6_3:83669813-83669832 | Msa0961580:CDS | 25.0% |
| ! | TCATTTGCAAGATATTACAA+AGG | - | chr6_3:83670035-83670054 | None:intergenic | 25.0% |
| ! | TTTGTTTGTGTCATAACAAT+TGG | + | chr6_3:83670250-83670269 | Msa0961580:three_prime_UTR | 25.0% |
| ! | GATTGATCTGATTTGTGAAA+TGG | + | chr6_3:83665989-83666008 | Msa0961580:intron | 30.0% |
| TAGTTGAGTCGTAATTTGAT+CGG | + | chr6_3:83666729-83666748 | Msa0961580:intron | 30.0% | |
| GTTCAATTGTTTGAATCTTC+TGG | + | chr6_3:83666840-83666859 | Msa0961580:intron | 30.0% | |
| ! | ATTGTTTGAATCTTCTGGTT+CGG | + | chr6_3:83666845-83666864 | Msa0961580:intron | 30.0% |
| !!! | TGGTTCGGTTTTTAAAACAT+TGG | + | chr6_3:83666860-83666879 | Msa0961580:intron | 30.0% |
| !!! | TGGTTCGGATTTTAAAACAT+CGG | + | chr6_3:83666909-83666928 | Msa0961580:intron | 30.0% |
| AATTGATTGCTGAATCATTC+TGG | + | chr6_3:83666943-83666962 | Msa0961580:intron | 30.0% | |
| GTTAGTATGTGAGATTTGAT+CGG | + | chr6_3:83667183-83667202 | Msa0961580:intron | 30.0% | |
| TTAGTATGTGAGATTTGATC+GGG | + | chr6_3:83667184-83667203 | Msa0961580:intron | 30.0% | |
| ! | TCCTCTTTTCATAGTAAAAG+AGG | + | chr6_3:83667306-83667325 | Msa0961580:intron | 30.0% |
| ! | CCTCTTTTCATAGTAAAAGA+GGG | + | chr6_3:83667307-83667326 | Msa0961580:intron | 30.0% |
| AAAGATAAAGACAAGGGATT+GGG | - | chr6_3:83667417-83667436 | None:intergenic | 30.0% | |
| AAAAGATAAAGACAAGGGAT+TGG | - | chr6_3:83667418-83667437 | None:intergenic | 30.0% | |
| ! | AATCCCTTGTCTTTATCTTT+TGG | + | chr6_3:83667417-83667436 | Msa0961580:intron | 30.0% |
| GAAACCAAAAGATAAAGACA+AGG | - | chr6_3:83667424-83667443 | None:intergenic | 30.0% | |
| !!! | CATTAGCTACTTTTGAATGT+AGG | + | chr6_3:83667475-83667494 | Msa0961580:intron | 30.0% |
| CTAGAAAGTAAAACAACCTT+GGG | - | chr6_3:83667620-83667639 | None:intergenic | 30.0% | |
| ACTAGAAAGTAAAACAACCT+TGG | - | chr6_3:83667621-83667640 | None:intergenic | 30.0% | |
| GTCAAAATGTTGTCAAATAC+CGG | + | chr6_3:83667775-83667794 | Msa0961580:intron | 30.0% | |
| AATTGGAAAACAATCAGTGT+TGG | - | chr6_3:83667875-83667894 | None:intergenic | 30.0% | |
| GTAAAATTGAAACAAAAGGG+TGG | - | chr6_3:83667904-83667923 | None:intergenic | 30.0% | |
| ! | CTTTGTTTAGTGATGGTATA+CGG | - | chr6_3:83667970-83667989 | None:intergenic | 30.0% |
| GTATACCATCACTAAACAAA+GGG | + | chr6_3:83667969-83667988 | Msa0961580:CDS | 30.0% | |
| AATCTTCATGCAGAACATAT+AGG | + | chr6_3:83668153-83668172 | Msa0961580:intron | 30.0% | |
| ATCTTCATGCAGAACATATA+GGG | + | chr6_3:83668154-83668173 | Msa0961580:intron | 30.0% | |
| ! | TAGAGAAAAACTTTTGAGCA+TGG | - | chr6_3:83668206-83668225 | None:intergenic | 30.0% |
| ! | TGCTCAAAAGTTTTTCTCTA+AGG | + | chr6_3:83668206-83668225 | Msa0961580:CDS | 30.0% |
| TAATTATTGCTCGCAAATGA+AGG | + | chr6_3:83668252-83668271 | Msa0961580:intron | 30.0% | |
| ! | AAATCAGTTGACTCTTTCAA+AGG | + | chr6_3:83668509-83668528 | Msa0961580:CDS | 30.0% |
| ! | GAGATGTTTCTGATTCATTT+GGG | - | chr6_3:83668544-83668563 | None:intergenic | 30.0% |
| AAGAATTAGGAGAAAGACAT+CGG | - | chr6_3:83668676-83668695 | None:intergenic | 30.0% | |
| !!! | CAATCGTTTTCTTTTTCAAC+AGG | - | chr6_3:83668731-83668750 | None:intergenic | 30.0% |
| !! | CGACTCATGTTTAAGATTTT+AGG | + | chr6_3:83668885-83668904 | Msa0961580:intron | 30.0% |
| !!! | TTAAGATTTTAGGACCTGTA+TGG | + | chr6_3:83668895-83668914 | Msa0961580:intron | 30.0% |
| TCAAATATGCTAATCCATAC+AGG | - | chr6_3:83668912-83668931 | None:intergenic | 30.0% | |
| AGCTTAATACTAGTGATTTG+TGG | - | chr6_3:83669267-83669286 | None:intergenic | 30.0% | |
| ATCACTAGTATTAAGCTGTT+TGG | + | chr6_3:83669270-83669289 | Msa0961580:CDS | 30.0% | |
| AGCTATCAACTCTAATGAAA+TGG | + | chr6_3:83669356-83669375 | Msa0961580:CDS | 30.0% | |
| CTTGATACAGAATTATCACT+AGG | + | chr6_3:83669420-83669439 | Msa0961580:CDS | 30.0% | |
| !! | CTTGCTATTATCTTCAAACA+AGG | - | chr6_3:83669612-83669631 | None:intergenic | 30.0% |
| ! | AAATTCTTTAATTGCTGGCT+TGG | + | chr6_3:83669818-83669837 | Msa0961580:CDS | 30.0% |
| !! | AAAAGTACTTCCTGAGAATA+AGG | + | chr6_3:83669923-83669942 | Msa0961580:three_prime_UTR | 30.0% |
| TAAATCAGTTCCTTATTCTC+AGG | - | chr6_3:83669936-83669955 | None:intergenic | 30.0% | |
| GAAAACAACAAAAGATTTGC+TGG | - | chr6_3:83670115-83670134 | None:intergenic | 30.0% | |
| CATGATTGAATCAATGATTG+AGG | + | chr6_3:83670178-83670197 | Msa0961580:three_prime_UTR | 30.0% | |
| AGAAAGAGAGAATGAAGCAA+TGG | - | chr6_3:83665758-83665777 | None:intergenic | 35.0% | |
| TTCTCTCCAAATTCTTCATC+TGG | + | chr6_3:83665774-83665793 | Msa0961580:five_prime_UTR | 35.0% | |
| TCTCTCCAAATTCTTCATCT+GGG | + | chr6_3:83665775-83665794 | Msa0961580:five_prime_UTR | 35.0% | |
| ATTGAGACTTACAAAATCGG+TGG | + | chr6_3:83665858-83665877 | Msa0961580:five_prime_UTR | 35.0% | |
| ! | ATGTGATCTTTCTTTTGGTG+TGG | + | chr6_3:83666110-83666129 | Msa0961580:intron | 35.0% |
| ! | ATTTGCTACAATGGAGACTA+AGG | + | chr6_3:83666182-83666201 | Msa0961580:exon | 35.0% |
| !! | GAATAACGGATAACTGATGT+CGG | + | chr6_3:83666409-83666428 | Msa0961580:intron | 35.0% |
| TGTATATGAGACTAGAGACT+AGG | + | chr6_3:83666465-83666484 | Msa0961580:intron | 35.0% | |
| GTATATGAGACTAGAGACTA+GGG | + | chr6_3:83666466-83666485 | Msa0961580:intron | 35.0% | |
| TATATGAGACTAGAGACTAG+GGG | + | chr6_3:83666467-83666486 | Msa0961580:intron | 35.0% | |
| !!! | TGGTTCGGTTTTCAAAACAT+TGG | - | chr6_3:83666772-83666791 | None:intergenic | 35.0% |
| ! | AATGGTTCAACTGCTTTGAA+AGG | + | chr6_3:83666818-83666837 | Msa0961580:intron | 35.0% |
| ! | AAAATTCTAGGGGACAAACA+AGG | - | chr6_3:83667029-83667048 | None:intergenic | 35.0% |
| ! | TTGTTTGTCCCCTAGAATTT+TGG | + | chr6_3:83667028-83667047 | Msa0961580:intron | 35.0% |
| AACCTCACTCCAAAATTCTA+GGG | - | chr6_3:83667040-83667059 | None:intergenic | 35.0% | |
| TAACCTCACTCCAAAATTCT+AGG | - | chr6_3:83667041-83667060 | None:intergenic | 35.0% | |
| GAAAAGAGGAAAAAAGTCTC+CGG | - | chr6_3:83667296-83667315 | None:intergenic | 35.0% | |
| ! | CCCTCTTTTACTATGAAAAG+AGG | - | chr6_3:83667310-83667329 | None:intergenic | 35.0% |
| TGAATGTAGGATCAAGTTCA+AGG | + | chr6_3:83667488-83667507 | Msa0961580:intron | 35.0% | |
| CAAATTCCACTATGCTATAG+CGG | - | chr6_3:83667725-83667744 | None:intergenic | 35.0% | |
| CGTATACCATCACTAAACAA+AGG | + | chr6_3:83667968-83667987 | Msa0961580:CDS | 35.0% | |
| ! | TTTCTCCCTTTGTTTAGTGA+TGG | - | chr6_3:83667977-83667996 | None:intergenic | 35.0% |
| TCACTAAACAAAGGGAGAAA+TGG | + | chr6_3:83667977-83667996 | Msa0961580:CDS | 35.0% | |
| TGTTCTGCATGAAGATTAAG+AGG | - | chr6_3:83668150-83668169 | None:intergenic | 35.0% | |
| ! | GGACTTTAAAGGAAAGGATT+TGG | + | chr6_3:83668303-83668322 | Msa0961580:intron | 35.0% |
| AGATGCATGGAATGTTGAAA+TGG | - | chr6_3:83668370-83668389 | None:intergenic | 35.0% | |
| CAAGTAGGTATTAAGATGCA+TGG | - | chr6_3:83668383-83668402 | None:intergenic | 35.0% | |
| CATGCATCTTAATACCTACT+TGG | + | chr6_3:83668381-83668400 | Msa0961580:intron | 35.0% | |
| ! | GGAGATGTTTCTGATTCATT+TGG | - | chr6_3:83668545-83668564 | None:intergenic | 35.0% |
| TCAAGCAGTTTATCATACCA+TGG | - | chr6_3:83668837-83668856 | None:intergenic | 35.0% | |
| TTCCTCGGAAGAAATAATCT+CGG | - | chr6_3:83669211-83669230 | None:intergenic | 35.0% | |
| TTTGGAAGATTGAGTTTCCT+CGG | - | chr6_3:83669226-83669245 | None:intergenic | 35.0% | |
| CATATTTGCAGCATCTTCTT+TGG | - | chr6_3:83669244-83669263 | None:intergenic | 35.0% | |
| TTTGGTCGAACACTATCTAT+GGG | + | chr6_3:83669288-83669307 | Msa0961580:CDS | 35.0% | |
| TGAAATGGATGATCTTGAGA+AGG | + | chr6_3:83669371-83669390 | Msa0961580:CDS | 35.0% | |
| AATGCGCAACTTTACCATTA+TGG | + | chr6_3:83669511-83669530 | Msa0961580:CDS | 35.0% | |
| GAAGATAATAGCAAGAGAAG+AGG | + | chr6_3:83669617-83669636 | Msa0961580:CDS | 35.0% | |
| TCAAACTCAAAAACATCGTC+AGG | + | chr6_3:83669725-83669744 | Msa0961580:CDS | 35.0% | |
| TCCTTAAGAAATCTGGAAGA+GGG | + | chr6_3:83669757-83669776 | Msa0961580:CDS | 35.0% | |
| ! | TCAGTGTTTACTCCCATTTT+TGG | + | chr6_3:83670133-83670152 | Msa0961580:three_prime_UTR | 35.0% |
| GACATACATGTGCCAAAAAT+GGG | - | chr6_3:83670148-83670167 | None:intergenic | 35.0% | |
| AGACATACATGTGCCAAAAA+TGG | - | chr6_3:83670149-83670168 | None:intergenic | 35.0% | |
| ATGAAGCAATGGAAGAAGGT+TGG | - | chr6_3:83665747-83665766 | None:intergenic | 40.0% | |
| GAGAATGAAGCAATGGAAGA+AGG | - | chr6_3:83665751-83665770 | None:intergenic | 40.0% | |
| AGTGACCCAGATGAAGAATT+TGG | - | chr6_3:83665783-83665802 | None:intergenic | 40.0% | |
| TGGACTCAGCTGAAATTACA+AGG | + | chr6_3:83665878-83665897 | Msa0961580:five_prime_UTR | 40.0% | |
| !! | TTCTTTTGGTGTGGCTTGAT+TGG | + | chr6_3:83666119-83666138 | Msa0961580:intron | 40.0% |
| ! | CTGATATTGTTAGGGTGTTC+TGG | + | chr6_3:83666148-83666167 | Msa0961580:five_prime_UTR | 40.0% |
| ! | ATTGTTAGGGTGTTCTGGAT+TGG | + | chr6_3:83666153-83666172 | Msa0961580:five_prime_UTR | 40.0% |
| !! | TGGCTCTGAATTTGCTACAA+TGG | + | chr6_3:83666173-83666192 | Msa0961580:exon | 40.0% |
| ! | AGACTAGGGGAGTTTCTTTT+TGG | + | chr6_3:83666480-83666499 | Msa0961580:intron | 40.0% |
| TTTGAAAACCGAACCAGACA+TGG | + | chr6_3:83666776-83666795 | Msa0961580:intron | 40.0% | |
| ACATGGAATCAGGTAGACTT+TGG | + | chr6_3:83666793-83666812 | Msa0961580:intron | 40.0% | |
| ATCAGGTAGACTTTGGCTAA+TGG | + | chr6_3:83666800-83666819 | Msa0961580:intron | 40.0% | |
| ACCTCACTCCAAAATTCTAG+GGG | - | chr6_3:83667039-83667058 | None:intergenic | 40.0% | |
| TATGTGAGATTTGATCGGGA+CGG | + | chr6_3:83667188-83667207 | Msa0961580:intron | 40.0% | |
| CTATTTAACATGCTGCTGCT+TGG | + | chr6_3:83667226-83667245 | Msa0961580:intron | 40.0% | |
| GTGGAGGATTGAATGTAAGA+TGG | - | chr6_3:83667269-83667288 | None:intergenic | 40.0% | |
| ! | ACTGTAATCCACCTTTGGAA+TGG | - | chr6_3:83667544-83667563 | None:intergenic | 40.0% |
| TTCAGACTGTAATCCACCTT+TGG | - | chr6_3:83667549-83667568 | None:intergenic | 40.0% | |
| TGAAAATGATGCTAAGTCGC+AGG | + | chr6_3:83667565-83667584 | Msa0961580:CDS | 40.0% | |
| TTGTTATACAGTCGCTGTAG+CGG | + | chr6_3:83667671-83667690 | Msa0961580:intron | 40.0% | |
| TGCTGTAGTTCAGTTATAGC+CGG | - | chr6_3:83667797-83667816 | None:intergenic | 40.0% | |
| ACAGCACTGTAGTTGCATAA+CGG | + | chr6_3:83667811-83667830 | Msa0961580:intron | 40.0% | |
| CAAAAGGGTGGTTCTTCAAT+TGG | - | chr6_3:83667892-83667911 | None:intergenic | 40.0% | |
| ! | GAACTTTTGATGCTCTTCGT+CGG | - | chr6_3:83668004-83668023 | None:intergenic | 40.0% |
| ! | AGAGCATCAAAAGTTCCTTG+AGG | + | chr6_3:83668008-83668027 | Msa0961580:CDS | 40.0% |
| CATACAGTTTCAAAGCCTCA+AGG | - | chr6_3:83668026-83668045 | None:intergenic | 40.0% | |
| !! | CTTGAGGCTTTGAAACTGTA+TGG | + | chr6_3:83668024-83668043 | Msa0961580:CDS | 40.0% |
| ! | TCGAATCTGAACTGCAGTTT+TGG | - | chr6_3:83668181-83668200 | None:intergenic | 40.0% |
| CTTAATACCTACTTGGTTGC+AGG | + | chr6_3:83668388-83668407 | Msa0961580:intron | 40.0% | |
| GGTATGTCAATTGGCTGAAT+AGG | - | chr6_3:83668446-83668465 | None:intergenic | 40.0% | |
| !! | AAGAGTCAACTGATTTGCGA+GGG | - | chr6_3:83668505-83668524 | None:intergenic | 40.0% |
| !! | AAAGAGTCAACTGATTTGCG+AGG | - | chr6_3:83668506-83668525 | None:intergenic | 40.0% |
| TGACTCTTTCAAAGGACAGT+TGG | + | chr6_3:83668517-83668536 | Msa0961580:CDS | 40.0% | |
| TGTACTATCTGCACTTGGTT+CGG | + | chr6_3:83668613-83668632 | Msa0961580:CDS | 40.0% | |
| TATCATACCATGGCCATAAG+TGG | - | chr6_3:83668827-83668846 | None:intergenic | 40.0% | |
| GTTTGGTCGAACACTATCTA+TGG | + | chr6_3:83669287-83669306 | Msa0961580:CDS | 40.0% | |
| ATGGATGATCTTGAGAAGGT+TGG | + | chr6_3:83669375-83669394 | Msa0961580:CDS | 40.0% | |
| TGGATGATCTTGAGAAGGTT+GGG | + | chr6_3:83669376-83669395 | Msa0961580:CDS | 40.0% | |
| CCTTGGTACAAACTCCATAA+TGG | - | chr6_3:83669528-83669547 | None:intergenic | 40.0% | |
| CCATTATGGAGTTTGTACCA+AGG | + | chr6_3:83669525-83669544 | Msa0961580:CDS | 40.0% | |
| ! | TTTGATGATTGCATGGCATG+AGG | - | chr6_3:83669566-83669585 | None:intergenic | 40.0% |
| TTCTTAATCCTGTGCCTCTT+AGG | + | chr6_3:83669586-83669605 | Msa0961580:CDS | 40.0% | |
| ATCTTCAAACAAGGCCTAAG+AGG | - | chr6_3:83669603-83669622 | None:intergenic | 40.0% | |
| ! | ATCGCAAACTGATTCAGTGT+TGG | - | chr6_3:83669661-83669680 | None:intergenic | 40.0% |
| CACTGAATCAGTTTGCGATA+TGG | + | chr6_3:83669662-83669681 | Msa0961580:CDS | 40.0% | |
| ACTCAAAAACATCGTCAGGA+AGG | + | chr6_3:83669729-83669748 | Msa0961580:CDS | 40.0% | |
| GGAGTTGTCCTTAAGAAATC+TGG | + | chr6_3:83669750-83669769 | Msa0961580:CDS | 40.0% | |
| GTCCTTAAGAAATCTGGAAG+AGG | + | chr6_3:83669756-83669775 | Msa0961580:CDS | 40.0% | |
| ACCCTCTTCCAGATTTCTTA+AGG | - | chr6_3:83669761-83669780 | None:intergenic | 40.0% | |
| TCAATGATTGAGGTGCAAGA+AGG | + | chr6_3:83670188-83670207 | Msa0961580:three_prime_UTR | 40.0% | |
| !! | TTTTGGTGTGGCTTGATTGG+TGG | + | chr6_3:83666122-83666141 | Msa0961580:intron | 45.0% |
| TGGTGGCAGCTGATATTGTT+AGG | + | chr6_3:83666139-83666158 | Msa0961580:intron | 45.0% | |
| GGTGGCAGCTGATATTGTTA+GGG | + | chr6_3:83666140-83666159 | Msa0961580:intron | 45.0% | |
| ACCTGATTCCATGTCTGGTT+CGG | - | chr6_3:83666787-83666806 | None:intergenic | 45.0% | |
| AGTCTACCTGATTCCATGTC+TGG | - | chr6_3:83666792-83666811 | None:intergenic | 45.0% | |
| ! | GCAAAGCGCTTGCCTAAATA+AGG | + | chr6_3:83666970-83666989 | Msa0961580:intron | 45.0% |
| !!! | TCCCCTAGAATTTTGGAGTG+AGG | + | chr6_3:83667035-83667054 | Msa0961580:intron | 45.0% |
| CATTCAATCCTCCACTCTTC+CGG | + | chr6_3:83667274-83667293 | Msa0961580:intron | 45.0% | |
| GAAAAAAGTCTCCGGAAGAG+TGG | - | chr6_3:83667288-83667307 | None:intergenic | 45.0% | |
| ! | GTTCAAGGCACTAAGTCAAC+TGG | + | chr6_3:83667503-83667522 | Msa0961580:CDS | 45.0% |
| ! | GCTAGTAAGTGCCATTCCAA+AGG | + | chr6_3:83667530-83667549 | Msa0961580:CDS | 45.0% |
| ! | AGTAAGTGCCATTCCAAAGG+TGG | + | chr6_3:83667533-83667552 | Msa0961580:CDS | 45.0% |
| TCGCAGGATATACCTTCTGT+CGG | + | chr6_3:83667581-83667600 | Msa0961580:CDS | 45.0% | |
| GTAAAACAACCTTGGGAGCA+AGG | - | chr6_3:83667613-83667632 | None:intergenic | 45.0% | |
| AAACAGCCGCTATAGCATAG+TGG | + | chr6_3:83667716-83667735 | Msa0961580:intron | 45.0% | |
| AGCGTATTGCAGAACAGCAT+CGG | - | chr6_3:83667750-83667769 | None:intergenic | 45.0% | |
| TAGCAGATCGCGGAAAATAG+CGG | - | chr6_3:83667849-83667868 | None:intergenic | 45.0% | |
| !! | GCTTTGAAACTGTATGGTCG+TGG | + | chr6_3:83668030-83668049 | Msa0961580:CDS | 45.0% |
| CAATTGACATACCTCCTCCT+CGG | + | chr6_3:83668453-83668472 | Msa0961580:CDS | 45.0% | |
| ! | TTTGCGAGGGTATGGATGAA+GGG | - | chr6_3:83668492-83668511 | None:intergenic | 45.0% |
| ! | ATTTGCGAGGGTATGGATGA+AGG | - | chr6_3:83668493-83668512 | None:intergenic | 45.0% |
| !! | TCAACTGATTTGCGAGGGTA+TGG | - | chr6_3:83668500-83668519 | None:intergenic | 45.0% |
| GCAACTGACAGGTTAATGGA+TGG | - | chr6_3:83668566-83668585 | None:intergenic | 45.0% | |
| CTCTGCAACTGACAGGTTAA+TGG | - | chr6_3:83668570-83668589 | None:intergenic | 45.0% | |
| TGTCATTCTCTGCAACTGAC+AGG | - | chr6_3:83668577-83668596 | None:intergenic | 45.0% | |
| AGTGCAGATAGTACAGAGGT+TGG | - | chr6_3:83668608-83668627 | None:intergenic | 45.0% | |
| ACCTCTGTACTATCTGCACT+TGG | + | chr6_3:83668608-83668627 | Msa0961580:CDS | 45.0% | |
| ACCAAGTGCAGATAGTACAG+AGG | - | chr6_3:83668612-83668631 | None:intergenic | 45.0% | |
| ATCTCGGTGGTGCAAGAATT+AGG | - | chr6_3:83668689-83668708 | None:intergenic | 45.0% | |
| !!! | GGTTTTGAGTCGGTGGATAA+AGG | - | chr6_3:83668806-83668825 | None:intergenic | 45.0% |
| !!! | CATAAGTGGTTTTGAGTCGG+TGG | - | chr6_3:83668813-83668832 | None:intergenic | 45.0% |
| !! | CACCGACTCAAAACCACTTA+TGG | + | chr6_3:83668811-83668830 | Msa0961580:CDS | 45.0% |
| !!! | GGCCATAAGTGGTTTTGAGT+CGG | - | chr6_3:83668816-83668835 | None:intergenic | 45.0% |
| CTCAAAACCACTTATGGCCA+TGG | + | chr6_3:83668817-83668836 | Msa0961580:CDS | 45.0% | |
| !!! | CACTGTTTTGGCAGAGCTTA+TGG | + | chr6_3:83668960-83668979 | Msa0961580:intron | 45.0% |
| ! | GTCCGAGATTATTTCTTCCG+AGG | + | chr6_3:83669206-83669225 | Msa0961580:CDS | 45.0% |
| GGGTTCTCAGAAGTCAATGA+AGG | + | chr6_3:83669308-83669327 | Msa0961580:CDS | 45.0% | |
| TGAGAAGGTTGGGCAAAAAG+AGG | + | chr6_3:83669386-83669405 | Msa0961580:CDS | 45.0% | |
| CCGACATATGGATTCTCCTT+CGG | - | chr6_3:83669489-83669508 | None:intergenic | 45.0% | |
| CCGAAGGAGAATCCATATGT+CGG | + | chr6_3:83669486-83669505 | Msa0961580:CDS | 45.0% | |
| TGAGGTGCAAGAAGGAAACA+TGG | + | chr6_3:83670196-83670215 | Msa0961580:three_prime_UTR | 45.0% | |
| !! | TAAAATTTATTTACTAAATT+TGG | + | chr6_3:83668071-83668090 | Msa0961580:intron | 5.0% |
| ACCGAACCAGACATGGAATC+AGG | + | chr6_3:83666783-83666802 | Msa0961580:intron | 50.0% | |
| TCGGGACGGCAATTAAGCTT+AGG | + | chr6_3:83667202-83667221 | Msa0961580:intron | 50.0% | |
| AAAAGTCTCCGGAAGAGTGG+AGG | - | chr6_3:83667285-83667304 | None:intergenic | 50.0% | |
| ! | GCAAGGTTGTTTCCGACAGA+AGG | - | chr6_3:83667596-83667615 | None:intergenic | 50.0% |
| ! | GTGTTGGCAATAGCAGATCG+CGG | - | chr6_3:83667859-83667878 | None:intergenic | 50.0% |
| TGAAACTGTATGGTCGTGGC+TGG | + | chr6_3:83668034-83668053 | Msa0961580:CDS | 50.0% | |
| CTACTTGGTTGCAGGTTGTG+CGG | + | chr6_3:83668396-83668415 | Msa0961580:intron | 50.0% | |
| TACTTGGTTGCAGGTTGTGC+GGG | + | chr6_3:83668397-83668416 | Msa0961580:intron | 50.0% | |
| ! | CGAGGAGGAGGTATGTCAAT+TGG | - | chr6_3:83668455-83668474 | None:intergenic | 50.0% |
| GGATGAAGGGGTTTCCTCTT+CGG | - | chr6_3:83668479-83668498 | None:intergenic | 50.0% | |
| ! | TTGCGAGGGTATGGATGAAG+GGG | - | chr6_3:83668491-83668510 | None:intergenic | 50.0% |
| !! | GCACTTGGTTCGGAAGCATT+CGG | + | chr6_3:83668623-83668642 | Msa0961580:CDS | 50.0% |
| TCAACAGGTGACAAGCTGAC+CGG | - | chr6_3:83668716-83668735 | None:intergenic | 50.0% | |
| ! | CCTCAGATGGTTTGGATGTC+TGG | - | chr6_3:83668754-83668773 | None:intergenic | 50.0% |
| CCAGACATCCAAACCATCTG+AGG | + | chr6_3:83668751-83668770 | Msa0961580:CDS | 50.0% | |
| GACATCCAAACCATCTGAGG+AGG | + | chr6_3:83668754-83668773 | Msa0961580:CDS | 50.0% | |
| CTCTTCCTCCTCAGATGGTT+TGG | - | chr6_3:83668762-83668781 | None:intergenic | 50.0% | |
| CCTTTCTCTTCCTCCTCAGA+TGG | - | chr6_3:83668767-83668786 | None:intergenic | 50.0% | |
| CCATCTGAGGAGGAAGAGAA+AGG | + | chr6_3:83668764-83668783 | Msa0961580:CDS | 50.0% | |
| CTAGGCATGTGTACACCTGA+TGG | + | chr6_3:83669438-83669457 | Msa0961580:CDS | 50.0% | |
| GATGATTGCATGGCATGAGG+TGG | - | chr6_3:83669563-83669582 | None:intergenic | 50.0% | |
| ! | AAACAAGGCCTAAGAGGCAC+AGG | - | chr6_3:83669597-83669616 | None:intergenic | 50.0% |
| GAAGAGGAAAGCTCTTGCAC+TGG | + | chr6_3:83669633-83669652 | Msa0961580:CDS | 50.0% | |
| !! | TGCTGGCTTGGAAGAAAGAG+AGG | + | chr6_3:83669830-83669849 | Msa0961580:CDS | 50.0% |
| !! | GCTGGCTTGGAAGAAAGAGA+GGG | + | chr6_3:83669831-83669850 | Msa0961580:CDS | 50.0% |
| ! | GCTGCTGCTTGGTATGAAGC+AGG | + | chr6_3:83667237-83667256 | Msa0961580:intron | 55.0% |
| CGGAAACAACCTTGCTCCCA+AGG | + | chr6_3:83667601-83667620 | Msa0961580:CDS | 55.0% | |
| CGTGGCTGGCGTCAAATTGA+AGG | + | chr6_3:83668048-83668067 | Msa0961580:CDS | 55.0% | |
| CGCACAACCTGCAACCAAGT+AGG | - | chr6_3:83668398-83668417 | None:intergenic | 55.0% | |
| GGACTTTCAGCACTGCCATC+AGG | - | chr6_3:83668425-83668444 | None:intergenic | 55.0% | |
| TTGCACCACCGAGATTCACC+CGG | + | chr6_3:83668694-83668713 | Msa0961580:CDS | 55.0% | |
| CAAGCTGACCGGGTGAATCT+CGG | - | chr6_3:83668705-83668724 | None:intergenic | 55.0% | |
| CAACAGGTGACAAGCTGACC+GGG | - | chr6_3:83668715-83668734 | None:intergenic | 55.0% | |
| CTGCTCACTTGAGCTCCATC+AGG | - | chr6_3:83669456-83669475 | None:intergenic | 55.0% | |
| TGGAGCTCAAGTGAGCAGCA+TGG | + | chr6_3:83669458-83669477 | Msa0961580:CDS | 55.0% | |
| GAGCAGCATGGAACAACCGA+AGG | + | chr6_3:83669470-83669489 | Msa0961580:CDS | 55.0% | |
| GTTGCGCATTCGCCGACATA+TGG | - | chr6_3:83669501-83669520 | None:intergenic | 55.0% | |
| GCATGAGGTGGAAAGCTGGA+AGG | - | chr6_3:83669551-83669570 | None:intergenic | 55.0% | |
| CATGGCATGAGGTGGAAAGC+TGG | - | chr6_3:83669555-83669574 | None:intergenic | 55.0% | |
| CAGGTTGTGCGGGAACCTGA+TGG | + | chr6_3:83668407-83668426 | Msa0961580:intron | 60.0% | |
| GGTGGAAAGCTGGAAGGCCT+TGG | - | chr6_3:83669545-83669564 | None:intergenic | 60.0% | |
| TACCTCCTCCTCGGCCGAAG+AGG | + | chr6_3:83668462-83668481 | Msa0961580:CDS | 65.0% | |
| TTCCTCTTCGGCCGAGGAGG+AGG | - | chr6_3:83668467-83668486 | None:intergenic | 65.0% | |
| GGTTTCCTCTTCGGCCGAGG+AGG | - | chr6_3:83668470-83668489 | None:intergenic | 65.0% | |
| AGGGGTTTCCTCTTCGGCCG+AGG | - | chr6_3:83668473-83668492 | None:intergenic | 65.0% | |
| GCTGACCGGGTGAATCTCGG+TGG | - | chr6_3:83668702-83668721 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 83665744 | 83670286 | 83665744 | ID=Msa0961580;Name=Msa0961580 |
| chr6_3 | mRNA | 83665744 | 83670286 | 83665744 | ID=Msa0961580-mRNA-1;Parent=Msa0961580;Name=Msa0961580-mRNA-1;_AED=0.03;_eAED=0.03;_QI=200|1|1|1|0.83|0.71|7|408|471 |
| chr6_3 | exon | 83665744 | 83665899 | 83665744 | ID=Msa0961580-mRNA-1:exon:14974;Parent=Msa0961580-mRNA-1 |
| chr6_3 | exon | 83666148 | 83666203 | 83666148 | ID=Msa0961580-mRNA-1:exon:14975;Parent=Msa0961580-mRNA-1 |
| chr6_3 | exon | 83667497 | 83667622 | 83667497 | ID=Msa0961580-mRNA-1:exon:14976;Parent=Msa0961580-mRNA-1 |
| chr6_3 | exon | 83667958 | 83668069 | 83667958 | ID=Msa0961580-mRNA-1:exon:14977;Parent=Msa0961580-mRNA-1 |
| chr6_3 | exon | 83668166 | 83668227 | 83668166 | ID=Msa0961580-mRNA-1:exon:14978;Parent=Msa0961580-mRNA-1 |
| chr6_3 | exon | 83668410 | 83668838 | 83668410 | ID=Msa0961580-mRNA-1:exon:14979;Parent=Msa0961580-mRNA-1 |
| chr6_3 | exon | 83669204 | 83670286 | 83669204 | ID=Msa0961580-mRNA-1:exon:14980;Parent=Msa0961580-mRNA-1 |
| chr6_3 | five_prime_UTR | 83665744 | 83665899 | 83665744 | ID=Msa0961580-mRNA-1:five_prime_utr;Parent=Msa0961580-mRNA-1 |
| chr6_3 | five_prime_UTR | 83666148 | 83666191 | 83666148 | ID=Msa0961580-mRNA-1:five_prime_utr;Parent=Msa0961580-mRNA-1 |
| chr6_3 | CDS | 83666192 | 83666203 | 83666192 | ID=Msa0961580-mRNA-1:cds;Parent=Msa0961580-mRNA-1 |
| chr6_3 | CDS | 83667497 | 83667622 | 83667497 | ID=Msa0961580-mRNA-1:cds;Parent=Msa0961580-mRNA-1 |
| chr6_3 | CDS | 83667958 | 83668069 | 83667958 | ID=Msa0961580-mRNA-1:cds;Parent=Msa0961580-mRNA-1 |
| chr6_3 | CDS | 83668166 | 83668227 | 83668166 | ID=Msa0961580-mRNA-1:cds;Parent=Msa0961580-mRNA-1 |
| chr6_3 | CDS | 83668410 | 83668838 | 83668410 | ID=Msa0961580-mRNA-1:cds;Parent=Msa0961580-mRNA-1 |
| chr6_3 | CDS | 83669204 | 83669878 | 83669204 | ID=Msa0961580-mRNA-1:cds;Parent=Msa0961580-mRNA-1 |
| chr6_3 | three_prime_UTR | 83669879 | 83670286 | 83669879 | ID=Msa0961580-mRNA-1:three_prime_utr;Parent=Msa0961580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
