AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1465900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1465900 MtrunA17_Chr2g0280601 87.576 330 21 6 1 328 1 312 2.87e-176 491
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1465900 AT1G11440.1 33.750 320 161 10 34 318 40 343 4.35e-32 123

Find 78 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATCATACACATGATATTT+TGG 0.163562 tig0045695:+3449 Msa1465900:intergenic
CTTGAATCATAGGCATAATT+TGG 0.169510 tig0045695:+3554 Msa1465900:intergenic
AAAGATGATGATTACAATTC+AGG 0.246529 tig0045695:-3008 Msa1465900:CDS
TCCTATTCTGGATCTGATTA+TGG 0.249805 tig0045695:-3665 Msa1465900:CDS
CCTCAATATCCTAGTGGATA+TGG 0.262399 tig0045695:-2924 Msa1465900:CDS
GAGACTGCAGATTATTTGTT+TGG 0.264793 tig0045695:-2771 Msa1465900:CDS
TACTACAACTCTTCCTATTC+TGG 0.299587 tig0045695:-3677 Msa1465900:CDS
GATATTTGTGAAAGCTTGTT+TGG 0.300100 tig0045695:-2888 Msa1465900:CDS
AAAATTTGCTATCCTCGTTC+TGG 0.337505 tig0045695:-3284 Msa1465900:CDS
AGAGGAATTGGAATTGGAAT+TGG 0.340013 tig0045695:+3200 Msa1465900:intergenic
GGGAGAAGGGATGATGATTA+TGG 0.345709 tig0045695:-2729 Msa1465900:CDS
CTTCTCCCACCATATGGATA+TGG 0.352650 tig0045695:+2744 Msa1465900:intergenic
AAAATATGAACTTGAATCAT+AGG 0.365127 tig0045695:+3544 Msa1465900:intergenic
GTGAAAGCTTGTTTGGGACT+TGG 0.366700 tig0045695:-2881 Msa1465900:CDS
ACAGGAAGAGGAAGAGGAAT+TGG 0.366963 tig0045695:+3188 Msa1465900:intergenic
GAATATGATCCAACACCTTA+TGG 0.367582 tig0045695:-3359 Msa1465900:CDS
AGAGGAAGAGGAATTGGAAT+TGG 0.368214 tig0045695:+3194 Msa1465900:intergenic
ATTGAAGTTGGAGTTGGAAT+TGG 0.373367 tig0045695:+3248 Msa1465900:intergenic
GTTGGAGTTGGAGTTGGAAT+TGG 0.391393 tig0045695:+3224 Msa1465900:intergenic
GTTTGGTTATAACTATGATC+AGG 0.399077 tig0045695:+3503 Msa1465900:intergenic
TACAATTCAGGGTCTATTGA+TGG 0.399987 tig0045695:-2996 Msa1465900:CDS
AGCTGAGTCATACCATAATT+AGG 0.400526 tig0045695:+3428 Msa1465900:intergenic
TCTATTGATGGAAGTGGGTT+TGG 0.402997 tig0045695:-2984 Msa1465900:CDS
AGACTGCAGATTATTTGTTT+GGG 0.421762 tig0045695:-2770 Msa1465900:CDS
GTTGGAATTGGAATTGAAGT+TGG 0.430086 tig0045695:+3236 Msa1465900:intergenic
TATGGAGGAGAACTTGTCTA+TGG 0.431623 tig0045695:-2711 Msa1465900:CDS
CATGTGTATGATCCTAATTA+TGG 0.435474 tig0045695:-3440 Msa1465900:CDS
AAGATGATGATTACAATTCA+GGG 0.441787 tig0045695:-3007 Msa1465900:CDS
TCATCCCTTCTCCCACCATA+TGG 0.443511 tig0045695:+2738 Msa1465900:intergenic
ATATTTGTGAAAGCTTGTTT+GGG 0.444434 tig0045695:-2887 Msa1465900:CDS
ATTGGAATTGGAATTGGAGT+TGG 0.447067 tig0045695:+3206 Msa1465900:intergenic
TTTGGGAGTCCATATCCATA+TGG 0.447405 tig0045695:-2753 Msa1465900:CDS
AGAATAGGAAGAGTTGTAGT+AGG 0.471440 tig0045695:+3679 Msa1465900:intergenic
ATTGGAGTTGGAGTTGGAGT+TGG 0.472065 tig0045695:+3218 Msa1465900:intergenic
ATTGGAATTGAAGTTGGAGT+TGG 0.476828 tig0045695:+3242 Msa1465900:intergenic
TGTGCTATCTTATTCTACCT+TGG 0.484951 tig0045695:-3405 Msa1465900:CDS
TCAGGGTCTATTGATGGAAG+TGG 0.486763 tig0045695:-2990 Msa1465900:CDS
ATATCCTAGTGGATATGGAT+TGG 0.494935 tig0045695:-2919 Msa1465900:CDS
TTTGTCTCTTCCACAGGAAG+AGG 0.495452 tig0045695:+3176 Msa1465900:intergenic
ATTGGAATTGGAGTTGGAGT+TGG 0.498415 tig0045695:+3212 Msa1465900:intergenic
GAAAATTGTTGTAATAATGT+AGG 0.500479 tig0045695:-2834 Msa1465900:CDS
CCATATCCACTAGGATATTG+AGG 0.501136 tig0045695:+2924 Msa1465900:intergenic
TGGCAGAATATGCTATGGTT+TGG 0.503350 tig0045695:+3486 Msa1465900:intergenic
TATGACATTGATAAAACCTA+TGG 0.510181 tig0045695:-3329 Msa1465900:CDS
ATGTCATATCCACCACCATA+AGG 0.523925 tig0045695:+3344 Msa1465900:intergenic
GGATCATATTCATCAAATGC+AGG 0.525290 tig0045695:+3371 Msa1465900:intergenic
TGATCAGGGTAATTATTACT+AGG 0.526189 tig0045695:+3518 Msa1465900:intergenic
TCTTCCACAGGAAGAGGAAG+AGG 0.530204 tig0045695:+3182 Msa1465900:intergenic
CAGGGTCTATTGATGGAAGT+GGG 0.533263 tig0045695:-2989 Msa1465900:CDS
AATTCCTCTTCCTCTTCCTG+TGG 0.534737 tig0045695:-3186 Msa1465900:CDS
CTATTGTAAGTCATAAAAGA+TGG 0.538921 tig0045695:+3593 Msa1465900:intergenic
GAAACTAGTGAGGCTTATGA+AGG 0.540846 tig0045695:-3065 Msa1465900:CDS
CATATCCATATGGTGGGAGA+AGG 0.545116 tig0045695:-2743 Msa1465900:CDS
ATAATTGTGAGGAGAATATG+TGG 0.547709 tig0045695:-2797 Msa1465900:CDS
ACCATAATCAGATCCAGAAT+AGG 0.552094 tig0045695:+3664 Msa1465900:intergenic
TGAAGATAGTGATTATAATG+AGG 0.554318 tig0045695:-3033 Msa1465900:CDS
TGGATATGGATTGGAAACAT+TGG 0.554357 tig0045695:-2910 Msa1465900:CDS
TGCAGGTTCATTGAATTCCA+AGG 0.556486 tig0045695:+3388 Msa1465900:intergenic
GATCCAACACCTTATGGTGG+TGG 0.558239 tig0045695:-3353 Msa1465900:CDS
TTTGGTTATAACTATGATCA+GGG 0.567628 tig0045695:+3504 Msa1465900:intergenic
ATAGTACTATCTTGTAACTG+TGG 0.577684 tig0045695:+3092 Msa1465900:intergenic
AGTTGTGGCAGAATATGCTA+TGG 0.579454 tig0045695:+3481 Msa1465900:intergenic
AGAAGGGATGATGATTATGG+AGG 0.593904 tig0045695:-2726 Msa1465900:CDS
GGGAGTCCATATCCATATGG+TGG 0.594455 tig0045695:-2750 Msa1465900:CDS
ATATCCATATGGTGGGAGAA+GGG 0.601141 tig0045695:-2742 Msa1465900:CDS
TATCCACCACCATAAGGTGT+TGG 0.605098 tig0045695:+3350 Msa1465900:intergenic
AATAATGTAGGCATTCATAG+AGG 0.611847 tig0045695:-2822 Msa1465900:CDS
AACTTGTCTATGGCTATGAA+AGG 0.618083 tig0045695:-2701 Msa1465900:CDS
GGAGTCCATATCCATATGGT+GGG 0.622609 tig0045695:-2749 Msa1465900:CDS
ACTCCTCCTCAATATCCTAG+TGG 0.627804 tig0045695:-2930 Msa1465900:CDS
AGGTGCAAGAGGCTTACCAT+AGG 0.641236 tig0045695:+3313 Msa1465900:intergenic
GTTTCCAATCCATATCCACT+AGG 0.646059 tig0045695:+2915 Msa1465900:intergenic
TACTATAAAAGAAACTAGTG+AGG 0.655612 tig0045695:-3075 Msa1465900:CDS
GCGTGAGATTGAGATTGTGA+AGG 0.665697 tig0045695:-2958 Msa1465900:CDS
ATTGAAGTTGAACCAGAACG+AGG 0.688083 tig0045695:+3272 Msa1465900:intergenic
TCATAGAGGAAATAATTGTG+AGG 0.703356 tig0045695:-2808 Msa1465900:CDS
TATCCACTAGGATATTGAGG+AGG 0.717763 tig0045695:+2927 Msa1465900:intergenic
TATGATCCAACACCTTATGG+TGG 0.731194 tig0045695:-3356 Msa1465900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATGAACTTGAATCAT+AGG + tig0045695:2837-2856 Msa1465900:intergenic 20.0%
!! GAAAATTGTTGTAATAATGT+AGG - tig0045695:3544-3563 Msa1465900:CDS 20.0%
!! AAAATATGAACTTGAATCAT+AGG + tig0045695:2837-2856 Msa1465900:intergenic 20.0%
!! GAAAATTGTTGTAATAATGT+AGG - tig0045695:3544-3563 Msa1465900:CDS 20.0%
! CTATTGTAAGTCATAAAAGA+TGG + tig0045695:2788-2807 Msa1465900:intergenic 25.0%
! TTTGGTTATAACTATGATCA+GGG + tig0045695:2877-2896 Msa1465900:intergenic 25.0%
! TATGACATTGATAAAACCTA+TGG - tig0045695:3049-3068 Msa1465900:CDS 25.0%
! TACTATAAAAGAAACTAGTG+AGG - tig0045695:3303-3322 Msa1465900:CDS 25.0%
! TGAAGATAGTGATTATAATG+AGG - tig0045695:3345-3364 Msa1465900:CDS 25.0%
! AAAGATGATGATTACAATTC+AGG - tig0045695:3370-3389 Msa1465900:CDS 25.0%
! AAGATGATGATTACAATTCA+GGG - tig0045695:3371-3390 Msa1465900:CDS 25.0%
!! ATATTTGTGAAAGCTTGTTT+GGG - tig0045695:3491-3510 Msa1465900:CDS 25.0%
! CTATTGTAAGTCATAAAAGA+TGG + tig0045695:2788-2807 Msa1465900:intergenic 25.0%
! TTTGGTTATAACTATGATCA+GGG + tig0045695:2877-2896 Msa1465900:intergenic 25.0%
! TATGACATTGATAAAACCTA+TGG - tig0045695:3049-3068 Msa1465900:CDS 25.0%
! TACTATAAAAGAAACTAGTG+AGG - tig0045695:3303-3322 Msa1465900:CDS 25.0%
! TGAAGATAGTGATTATAATG+AGG - tig0045695:3345-3364 Msa1465900:CDS 25.0%
! AAAGATGATGATTACAATTC+AGG - tig0045695:3370-3389 Msa1465900:CDS 25.0%
! AAGATGATGATTACAATTCA+GGG - tig0045695:3371-3390 Msa1465900:CDS 25.0%
!! ATATTTGTGAAAGCTTGTTT+GGG - tig0045695:3491-3510 Msa1465900:CDS 25.0%
CTTGAATCATAGGCATAATT+TGG + tig0045695:2827-2846 Msa1465900:intergenic 30.0%
TGATCAGGGTAATTATTACT+AGG + tig0045695:2863-2882 Msa1465900:intergenic 30.0%
GTTTGGTTATAACTATGATC+AGG + tig0045695:2878-2897 Msa1465900:intergenic 30.0%
! TTTTGGATCACTAAAAGTTG+TGG + tig0045695:2915-2934 Msa1465900:intergenic 30.0%
! GGATCATACACATGATATTT+TGG + tig0045695:2932-2951 Msa1465900:intergenic 30.0%
CATGTGTATGATCCTAATTA+TGG - tig0045695:2938-2957 Msa1465900:CDS 30.0%
! GGATAGCAAATTTTATCTGA+AGG + tig0045695:3088-3107 Msa1465900:intergenic 30.0%
ATAGTACTATCTTGTAACTG+TGG + tig0045695:3289-3308 Msa1465900:intergenic 30.0%
! GATATTTGTGAAAGCTTGTT+TGG - tig0045695:3490-3509 Msa1465900:CDS 30.0%
!! CTCTTCATTTTTGACAAACA+AGG + tig0045695:3523-3542 Msa1465900:intergenic 30.0%
AATAATGTAGGCATTCATAG+AGG - tig0045695:3556-3575 Msa1465900:CDS 30.0%
TCATAGAGGAAATAATTGTG+AGG - tig0045695:3570-3589 Msa1465900:CDS 30.0%
ATAATTGTGAGGAGAATATG+TGG - tig0045695:3581-3600 Msa1465900:CDS 30.0%
AGACTGCAGATTATTTGTTT+GGG - tig0045695:3608-3627 Msa1465900:CDS 30.0%
CTTGAATCATAGGCATAATT+TGG + tig0045695:2827-2846 Msa1465900:intergenic 30.0%
TGATCAGGGTAATTATTACT+AGG + tig0045695:2863-2882 Msa1465900:intergenic 30.0%
GTTTGGTTATAACTATGATC+AGG + tig0045695:2878-2897 Msa1465900:intergenic 30.0%
! TTTTGGATCACTAAAAGTTG+TGG + tig0045695:2915-2934 Msa1465900:intergenic 30.0%
! GGATCATACACATGATATTT+TGG + tig0045695:2932-2951 Msa1465900:intergenic 30.0%
CATGTGTATGATCCTAATTA+TGG - tig0045695:2938-2957 Msa1465900:CDS 30.0%
! GGATAGCAAATTTTATCTGA+AGG + tig0045695:3088-3107 Msa1465900:intergenic 30.0%
ATAGTACTATCTTGTAACTG+TGG + tig0045695:3289-3308 Msa1465900:intergenic 30.0%
! GATATTTGTGAAAGCTTGTT+TGG - tig0045695:3490-3509 Msa1465900:CDS 30.0%
!! CTCTTCATTTTTGACAAACA+AGG + tig0045695:3523-3542 Msa1465900:intergenic 30.0%
AATAATGTAGGCATTCATAG+AGG - tig0045695:3556-3575 Msa1465900:CDS 30.0%
TCATAGAGGAAATAATTGTG+AGG - tig0045695:3570-3589 Msa1465900:CDS 30.0%
ATAATTGTGAGGAGAATATG+TGG - tig0045695:3581-3600 Msa1465900:CDS 30.0%
AGACTGCAGATTATTTGTTT+GGG - tig0045695:3608-3627 Msa1465900:CDS 30.0%
AGAATAGGAAGAGTTGTAGT+AGG + tig0045695:2702-2721 None:intergenic 35.0%
TACTACAACTCTTCCTATTC+TGG - tig0045695:2701-2720 Msa1465900:CDS 35.0%
TCCTATTCTGGATCTGATTA+TGG - tig0045695:2713-2732 Msa1465900:CDS 35.0%
ACCATAATCAGATCCAGAAT+AGG + tig0045695:2717-2736 Msa1465900:intergenic 35.0%
AGCTGAGTCATACCATAATT+AGG + tig0045695:2953-2972 Msa1465900:intergenic 35.0%
TGTGCTATCTTATTCTACCT+TGG - tig0045695:2973-2992 Msa1465900:CDS 35.0%
GGATCATATTCATCAAATGC+AGG + tig0045695:3010-3029 Msa1465900:intergenic 35.0%
GAATATGATCCAACACCTTA+TGG - tig0045695:3019-3038 Msa1465900:CDS 35.0%
!! ATTTTATCTGAAGGTGCAAG+AGG + tig0045695:3079-3098 Msa1465900:intergenic 35.0%
!! AAAATTTGCTATCCTCGTTC+TGG - tig0045695:3094-3113 Msa1465900:CDS 35.0%
ATTGAAGTTGGAGTTGGAAT+TGG + tig0045695:3133-3152 Msa1465900:intergenic 35.0%
ATTGGAATTGAAGTTGGAGT+TGG + tig0045695:3139-3158 Msa1465900:intergenic 35.0%
GTTGGAATTGGAATTGAAGT+TGG + tig0045695:3121-3140 Msa1465900:intergenic 35.0%
ATTGGAATTGGAATTGGAGT+TGG + tig0045695:3175-3194 Msa1465900:intergenic 35.0%
AGAGGAATTGGAATTGGAAT+TGG + tig0045695:3181-3200 Msa1465900:intergenic 35.0%
! TGGTCTATGGTTTCATTTTG+AGG + tig0045695:3250-3269 Msa1465900:intergenic 35.0%
!! TTCTACAGCATTTTGGTCTA+TGG + tig0045695:3263-3282 Msa1465900:intergenic 35.0%
TACAATTCAGGGTCTATTGA+TGG - tig0045695:3382-3401 Msa1465900:CDS 35.0%
! ATATCCTAGTGGATATGGAT+TGG - tig0045695:3459-3478 Msa1465900:CDS 35.0%
!! TGGATATGGATTGGAAACAT+TGG - tig0045695:3468-3487 Msa1465900:CDS 35.0%
GAGACTGCAGATTATTTGTT+TGG - tig0045695:3607-3626 Msa1465900:CDS 35.0%
AACTTGTCTATGGCTATGAA+AGG - tig0045695:3677-3696 Msa1465900:CDS 35.0%
AGAATAGGAAGAGTTGTAGT+AGG + tig0045695:2702-2721 Msa1465900:intergenic 35.0%
TACTACAACTCTTCCTATTC+TGG - tig0045695:2701-2720 Msa1465900:CDS 35.0%
TCCTATTCTGGATCTGATTA+TGG - tig0045695:2713-2732 Msa1465900:CDS 35.0%
ACCATAATCAGATCCAGAAT+AGG + tig0045695:2717-2736 Msa1465900:intergenic 35.0%
AGCTGAGTCATACCATAATT+AGG + tig0045695:2953-2972 Msa1465900:intergenic 35.0%
TGTGCTATCTTATTCTACCT+TGG - tig0045695:2973-2992 Msa1465900:CDS 35.0%
GGATCATATTCATCAAATGC+AGG + tig0045695:3010-3029 Msa1465900:intergenic 35.0%
GAATATGATCCAACACCTTA+TGG - tig0045695:3019-3038 Msa1465900:CDS 35.0%
!! ATTTTATCTGAAGGTGCAAG+AGG + tig0045695:3079-3098 Msa1465900:intergenic 35.0%
!! AAAATTTGCTATCCTCGTTC+TGG - tig0045695:3094-3113 Msa1465900:CDS 35.0%
ATTGAAGTTGGAGTTGGAAT+TGG + tig0045695:3133-3152 Msa1465900:intergenic 35.0%
ATTGGAATTGAAGTTGGAGT+TGG + tig0045695:3139-3158 Msa1465900:intergenic 35.0%
GTTGGAATTGGAATTGAAGT+TGG + tig0045695:3121-3140 Msa1465900:intergenic 35.0%
ATTGGAATTGGAATTGGAGT+TGG + tig0045695:3175-3194 Msa1465900:intergenic 35.0%
AGAGGAATTGGAATTGGAAT+TGG + tig0045695:3181-3200 Msa1465900:intergenic 35.0%
! TGGTCTATGGTTTCATTTTG+AGG + tig0045695:3250-3269 Msa1465900:intergenic 35.0%
!! TTCTACAGCATTTTGGTCTA+TGG + tig0045695:3263-3282 Msa1465900:intergenic 35.0%
TACAATTCAGGGTCTATTGA+TGG - tig0045695:3382-3401 Msa1465900:CDS 35.0%
! ATATCCTAGTGGATATGGAT+TGG - tig0045695:3459-3478 Msa1465900:CDS 35.0%
!! TGGATATGGATTGGAAACAT+TGG - tig0045695:3468-3487 Msa1465900:CDS 35.0%
GAGACTGCAGATTATTTGTT+TGG - tig0045695:3607-3626 Msa1465900:CDS 35.0%
AACTTGTCTATGGCTATGAA+AGG - tig0045695:3677-3696 Msa1465900:CDS 35.0%
TGGCAGAATATGCTATGGTT+TGG + tig0045695:2895-2914 Msa1465900:intergenic 40.0%
AGTTGTGGCAGAATATGCTA+TGG + tig0045695:2900-2919 Msa1465900:intergenic 40.0%
TGCAGGTTCATTGAATTCCA+AGG + tig0045695:2993-3012 Msa1465900:intergenic 40.0%
TATGATCCAACACCTTATGG+TGG - tig0045695:3022-3041 Msa1465900:CDS 40.0%
ATGTCATATCCACCACCATA+AGG + tig0045695:3037-3056 Msa1465900:intergenic 40.0%
ATTGAAGTTGAACCAGAACG+AGG + tig0045695:3109-3128 Msa1465900:intergenic 40.0%
ATTGGAATTGGAGTTGGAGT+TGG + tig0045695:3169-3188 Msa1465900:intergenic 40.0%
AGAGGAAGAGGAATTGGAAT+TGG + tig0045695:3187-3206 Msa1465900:intergenic 40.0%
!! TCAAGTTTTGTCTCTTCCAC+AGG + tig0045695:3211-3230 Msa1465900:intergenic 40.0%
! GTGGCTTTTCTACAGCATTT+TGG + tig0045695:3270-3289 Msa1465900:intergenic 40.0%
GAAACTAGTGAGGCTTATGA+AGG - tig0045695:3313-3332 Msa1465900:CDS 40.0%
! TCTATTGATGGAAGTGGGTT+TGG - tig0045695:3394-3413 Msa1465900:CDS 40.0%
TATCCACTAGGATATTGAGG+AGG + tig0045695:3454-3473 Msa1465900:intergenic 40.0%
CCATATCCACTAGGATATTG+AGG + tig0045695:3457-3476 Msa1465900:intergenic 40.0%
! CCTCAATATCCTAGTGGATA+TGG - tig0045695:3454-3473 Msa1465900:CDS 40.0%
GTTTCCAATCCATATCCACT+AGG + tig0045695:3466-3485 Msa1465900:intergenic 40.0%
TTTGGGAGTCCATATCCATA+TGG - tig0045695:3625-3644 Msa1465900:CDS 40.0%
! ATATCCATATGGTGGGAGAA+GGG - tig0045695:3636-3655 Msa1465900:CDS 40.0%
AGAAGGGATGATGATTATGG+AGG - tig0045695:3652-3671 Msa1465900:CDS 40.0%
TATGGAGGAGAACTTGTCTA+TGG - tig0045695:3667-3686 Msa1465900:CDS 40.0%
TGGCAGAATATGCTATGGTT+TGG + tig0045695:2895-2914 Msa1465900:intergenic 40.0%
AGTTGTGGCAGAATATGCTA+TGG + tig0045695:2900-2919 Msa1465900:intergenic 40.0%
TGCAGGTTCATTGAATTCCA+AGG + tig0045695:2993-3012 Msa1465900:intergenic 40.0%
TATGATCCAACACCTTATGG+TGG - tig0045695:3022-3041 Msa1465900:CDS 40.0%
ATGTCATATCCACCACCATA+AGG + tig0045695:3037-3056 Msa1465900:intergenic 40.0%
ATTGAAGTTGAACCAGAACG+AGG + tig0045695:3109-3128 Msa1465900:intergenic 40.0%
ATTGGAATTGGAGTTGGAGT+TGG + tig0045695:3169-3188 Msa1465900:intergenic 40.0%
AGAGGAAGAGGAATTGGAAT+TGG + tig0045695:3187-3206 Msa1465900:intergenic 40.0%
!! TCAAGTTTTGTCTCTTCCAC+AGG + tig0045695:3211-3230 Msa1465900:intergenic 40.0%
! GTGGCTTTTCTACAGCATTT+TGG + tig0045695:3270-3289 Msa1465900:intergenic 40.0%
GAAACTAGTGAGGCTTATGA+AGG - tig0045695:3313-3332 Msa1465900:CDS 40.0%
! TCTATTGATGGAAGTGGGTT+TGG - tig0045695:3394-3413 Msa1465900:CDS 40.0%
TATCCACTAGGATATTGAGG+AGG + tig0045695:3454-3473 Msa1465900:intergenic 40.0%
CCATATCCACTAGGATATTG+AGG + tig0045695:3457-3476 Msa1465900:intergenic 40.0%
! CCTCAATATCCTAGTGGATA+TGG - tig0045695:3454-3473 Msa1465900:CDS 40.0%
GTTTCCAATCCATATCCACT+AGG + tig0045695:3466-3485 Msa1465900:intergenic 40.0%
TTTGGGAGTCCATATCCATA+TGG - tig0045695:3625-3644 Msa1465900:CDS 40.0%
! ATATCCATATGGTGGGAGAA+GGG - tig0045695:3636-3655 Msa1465900:CDS 40.0%
AGAAGGGATGATGATTATGG+AGG - tig0045695:3652-3671 Msa1465900:CDS 40.0%
TATGGAGGAGAACTTGTCTA+TGG - tig0045695:3667-3686 Msa1465900:CDS 40.0%
TATCCACCACCATAAGGTGT+TGG + tig0045695:3031-3050 Msa1465900:intergenic 45.0%
GTTGGAGTTGGAGTTGGAAT+TGG + tig0045695:3157-3176 Msa1465900:intergenic 45.0%
ATTGGAGTTGGAGTTGGAGT+TGG + tig0045695:3163-3182 Msa1465900:intergenic 45.0%
ACAGGAAGAGGAAGAGGAAT+TGG + tig0045695:3193-3212 Msa1465900:intergenic 45.0%
AATTCCTCTTCCTCTTCCTG+TGG - tig0045695:3192-3211 Msa1465900:CDS 45.0%
TTTGTCTCTTCCACAGGAAG+AGG + tig0045695:3205-3224 Msa1465900:intergenic 45.0%
TCAGGGTCTATTGATGGAAG+TGG - tig0045695:3388-3407 Msa1465900:CDS 45.0%
CAGGGTCTATTGATGGAAGT+GGG - tig0045695:3389-3408 Msa1465900:CDS 45.0%
GCGTGAGATTGAGATTGTGA+AGG - tig0045695:3420-3439 Msa1465900:CDS 45.0%
ACTCCTCCTCAATATCCTAG+TGG - tig0045695:3448-3467 Msa1465900:CDS 45.0%
! GTGAAAGCTTGTTTGGGACT+TGG - tig0045695:3497-3516 Msa1465900:CDS 45.0%
GGAGTCCATATCCATATGGT+GGG - tig0045695:3629-3648 Msa1465900:CDS 45.0%
CTTCTCCCACCATATGGATA+TGG + tig0045695:3637-3656 Msa1465900:intergenic 45.0%
! CATATCCATATGGTGGGAGA+AGG - tig0045695:3635-3654 Msa1465900:CDS 45.0%
GGGAGAAGGGATGATGATTA+TGG - tig0045695:3649-3668 Msa1465900:CDS 45.0%
TATCCACCACCATAAGGTGT+TGG + tig0045695:3031-3050 Msa1465900:intergenic 45.0%
GTTGGAGTTGGAGTTGGAAT+TGG + tig0045695:3157-3176 Msa1465900:intergenic 45.0%
ATTGGAGTTGGAGTTGGAGT+TGG + tig0045695:3163-3182 Msa1465900:intergenic 45.0%
ACAGGAAGAGGAAGAGGAAT+TGG + tig0045695:3193-3212 Msa1465900:intergenic 45.0%
AATTCCTCTTCCTCTTCCTG+TGG - tig0045695:3192-3211 Msa1465900:CDS 45.0%
TTTGTCTCTTCCACAGGAAG+AGG + tig0045695:3205-3224 Msa1465900:intergenic 45.0%
TCAGGGTCTATTGATGGAAG+TGG - tig0045695:3388-3407 Msa1465900:CDS 45.0%
CAGGGTCTATTGATGGAAGT+GGG - tig0045695:3389-3408 Msa1465900:CDS 45.0%
GCGTGAGATTGAGATTGTGA+AGG - tig0045695:3420-3439 Msa1465900:CDS 45.0%
ACTCCTCCTCAATATCCTAG+TGG - tig0045695:3448-3467 Msa1465900:CDS 45.0%
! GTGAAAGCTTGTTTGGGACT+TGG - tig0045695:3497-3516 Msa1465900:CDS 45.0%
GGAGTCCATATCCATATGGT+GGG - tig0045695:3629-3648 Msa1465900:CDS 45.0%
CTTCTCCCACCATATGGATA+TGG + tig0045695:3637-3656 Msa1465900:intergenic 45.0%
! CATATCCATATGGTGGGAGA+AGG - tig0045695:3635-3654 Msa1465900:CDS 45.0%
GGGAGAAGGGATGATGATTA+TGG - tig0045695:3649-3668 Msa1465900:CDS 45.0%
GATCCAACACCTTATGGTGG+TGG - tig0045695:3025-3044 Msa1465900:CDS 50.0%
AGGTGCAAGAGGCTTACCAT+AGG + tig0045695:3068-3087 Msa1465900:intergenic 50.0%
TCTTCCACAGGAAGAGGAAG+AGG + tig0045695:3199-3218 Msa1465900:intergenic 50.0%
GGGAGTCCATATCCATATGG+TGG - tig0045695:3628-3647 Msa1465900:CDS 50.0%
TCATCCCTTCTCCCACCATA+TGG + tig0045695:3643-3662 Msa1465900:intergenic 50.0%
GATCCAACACCTTATGGTGG+TGG - tig0045695:3025-3044 Msa1465900:CDS 50.0%
AGGTGCAAGAGGCTTACCAT+AGG + tig0045695:3068-3087 Msa1465900:intergenic 50.0%
TCTTCCACAGGAAGAGGAAG+AGG + tig0045695:3199-3218 Msa1465900:intergenic 50.0%
GGGAGTCCATATCCATATGG+TGG - tig0045695:3628-3647 Msa1465900:CDS 50.0%
TCATCCCTTCTCCCACCATA+TGG + tig0045695:3643-3662 Msa1465900:intergenic 50.0%
Chromosome Type Strat End Strand Name
tig0045695 gene 2695 3705 2695 ID=Msa1465900;Name=Msa1465900
tig0045695 mRNA 2695 3705 2695 ID=Msa1465900-mRNA-1;Parent=Msa1465900;Name=Msa1465900-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|336
tig0045695 exon 2695 3705 2695 ID=Msa1465900-mRNA-1:exon:24923;Parent=Msa1465900-mRNA-1
tig0045695 CDS 2695 3705 2695 ID=Msa1465900-mRNA-1:cds;Parent=Msa1465900-mRNA-1
Gene Sequence

>Msa1465900

ATGGCCTACTACAACTCTTCCTATTCTGGATCTGATTATGGTGAGAACAATTTCAACTCTTATACTTTCAATTATGATTATGCTCAAGTTCCATCTTTTATGACTTACAATAGCTATGACTATAATCAACCAAATTATGCCTATGATTCAAGTTCATATTTTGCTCCTAGTAATAATTACCCTGATCATAGTTATAACCAAACCATAGCATATTCTGCCACAACTTTTAGTGATCCAAAATATCATGTGTATGATCCTAATTATGGTATGACTCAGCTTGTGCTATCTTATTCTACCTTGGAATTCAATGAACCTGCATTTGATGAATATGATCCAACACCTTATGGTGGTGGATATGACATTGATAAAACCTATGGTAAGCCTCTTGCACCTTCAGATAAAATTTGCTATCCTCGTTCTGGTTCAACTTCAATTCCAATTCCAACTCCAACTTCAATTCCAATTCCAACTCCAACTCCAACTCCAATTCCAATTCCAATTCCTCTTCCTCTTCCTGTGGAAGAGACAAAACTTGATGAGAAAGTAATCAAACCTCAAAATGAAACCATAGACCAAAATGCTGTAGAAAAGCCACAGTTACAAGATAGTACTATAAAAGAAACTAGTGAGGCTTATGAAGGTGAAGAATCTGAAGATAGTGATTATAATGAGGAAAAAGATGATGATTACAATTCAGGGTCTATTGATGGAAGTGGGTTTGGTGAGCGTGAGATTGAGATTGTGAAGGAAGTGACTCCTCCTCAATATCCTAGTGGATATGGATTGGAAACATTGGATATTTGTGAAAGCTTGTTTGGGACTTGGCCTTGTTTGTCAAAAATGAAGAGAGAAAATTGTTGTAATAATGTAGGCATTCATAGAGGAAATAATTGTGAGGAGAATATGTGGAAAGAGACTGCAGATTATTTGTTTGGGAGTCCATATCCATATGGTGGGAGAAGGGATGATGATTATGGAGGAGAACTTGTCTATGGCTATGAAAGGCATTGA

Protein sequence

>Msa1465900

MAYYNSSYSGSDYGENNFNSYTFNYDYAQVPSFMTYNSYDYNQPNYAYDSSSYFAPSNNYPDHSYNQTIAYSATTFSDPKYHVYDPNYGMTQLVLSYSTLEFNEPAFDEYDPTPYGGGYDIDKTYGKPLAPSDKICYPRSGSTSIPIPTPTSIPIPTPTPTPIPIPIPLPLPVEETKLDEKVIKPQNETIDQNAVEKPQLQDSTIKETSEAYEGEESEDSDYNEEKDDDYNSGSIDGSGFGEREIEIVKEVTPPQYPSGYGLETLDICESLFGTWPCLSKMKRENCCNNVGIHRGNNCEENMWKETADYLFGSPYPYGGRRDDDYGGELVYGYERH*