AlfalfaGEDB | Msa0971800

M. sativa cultivar zhongmu-4 / Msa0971800

KEGG: -
GO: GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944
PFAM: PF00657.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0971800	XP_024641257.1	67.686	229	17	2	3	174	153	381	1.36e-94	289

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0971800	sp\|Q9LY84\|GDL76_ARATH	36.937	222	80	4	12	173	165	386	8.93e-41	144

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0971800	A0A396H961	67.982	228	16	2	4	174	235	462	1.91e-94	291

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0030730	Msa0971800	0.805123	1.554173e-49	-8.615850e-47
Msa0032120	Msa0971800	0.805245	1.465248e-49	-8.615850e-47
Msa0037820	Msa0971800	0.800286	1.547824e-48	-8.615850e-47
Msa0038350	Msa0971800	-0.821535	3.834217e-53	-8.615850e-47
Msa0050940	Msa0971800	0.802059	6.712814e-49	-8.615850e-47
Msa0073820	Msa0971800	0.812828	3.482531e-51	-8.615850e-47
Msa0091770	Msa0971800	0.815947	7.120020e-52	-8.615850e-47
Msa0094100	Msa0971800	0.802369	5.795928e-49	-8.615850e-47
Msa0101320	Msa0971800	-0.807695	4.457169e-50	-8.615850e-47
Msa0105420	Msa0971800	0.819009	1.454277e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0971800	MtrunA17_Chr6g0450711	67.982	228	16	2	4	174	235	462	3.68e-98	291
Msa0971800	MtrunA17_Chr6g0450721	61.395	215	39	4	4	174	146	360	7.00e-79	238
Msa0971800	MtrunA17_Chr6g0450701	55.217	230	45	3	1	173	150	378	1.83e-76	233
Msa0971800	MtrunA17_Chr6g0450731	56.561	221	46	4	4	174	142	362	1.08e-72	223
Msa0971800	MtrunA17_Chr8g0352901	49.345	229	54	4	7	173	144	372	3.17e-64	201
Msa0971800	MtrunA17_Chr7g0226941	38.288	222	77	4	12	173	157	378	3.99e-44	149
Msa0971800	MtrunA17_Chr7g0226931	35.965	228	81	3	11	173	171	398	8.96e-42	144
Msa0971800	MtrunA17_Chr7g0226911	33.929	224	83	3	15	173	161	384	1.71e-38	135
Msa0971800	MtrunA17_Chr8g0339251	43.956	182	40	4	19	138	142	323	1.40e-36	129
Msa0971800	MtrunA17_Chr7g0254461	34.361	227	85	5	11	173	165	391	4.95e-36	129

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0971800	AT3G27950.1	37.281	228	87	4	2	173	143	370	2.86e-42	145
Msa0971800	AT5G14450.1	36.937	222	80	4	12	173	165	386	9.08e-42	144
Msa0971800	AT1G67830.1	33.480	227	79	6	11	173	151	369	1.92e-33	122
Msa0971800	AT3G26430.1	33.040	227	88	5	11	173	152	378	3.85e-33	121
Msa0971800	AT1G54790.1	29.439	214	88	4	15	165	155	368	6.93e-25	99.4
Msa0971800	AT1G54790.3	29.439	214	88	4	15	165	156	369	7.52e-25	99.4
Msa0971800	AT1G56670.1	28.502	207	94	5	21	173	165	371	4.85e-19	83.2
Msa0971800	AT1G09390.1	28.311	219	101	6	10	173	151	368	5.74e-17	77.4
Msa0971800	AT3G62280.1	24.645	211	102	3	12	165	147	357	1.42e-15	73.6
Msa0971800	AT3G16370.1	30.702	114	58	2	71	163	237	350	5.13e-11	60.5

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Find 68 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGCCTGAGGACTTCTCTA+AGG	0.441215	6_4:+3886689	Msa0971800:CDS
AAGGGTAACCTAGATGCCAA+TGG	0.648087	6_4:+3887256	Msa0971800:CDS
AAGTGGTCTTCCAAGGCCTG+AGG	0.653205	6_4:+3886677	Msa0971800:CDS
AATCAATTGGTTTGCCCTTT+GGG	0.267392	6_4:-3887992	None:intergenic
ACAGAACCACCTTTCAGAAG+TGG	0.611973	6_4:+3886660	Msa0971800:CDS
ACCAATTACCTTCACTGCTT+GGG	0.379470	6_4:-3886817	None:intergenic
ACCGGTTACCGCATAAACTG+TGG	0.597247	6_4:+3887883	Msa0971800:CDS
ACCTCAGAACAAAATAGCTC+AGG	0.506068	6_4:+3887288	Msa0971800:CDS
ACTAAGGAGAAAACTCTCAT+TGG	0.506960	6_4:+3887345	Msa0971800:CDS
ACTCAGTTGGATCAAATTAC+AGG	0.349530	6_4:+3886401	Msa0971800:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTAATGAAATGCAAAGATG+AGG	-	chr6_4:3886576-3886595	None:intergenic	30.0%
TAATGTAAACATGGATTTGG+TGG	-	chr6_4:3886845-3886864	None:intergenic	30.0%
GTATTACACTATCTGCTATT+TGG	+	chr6_4:3886912-3886931	Msa0971800:intron	30.0%
AAACAAGAGTGATAGTTCAA+AGG	-	chr6_4:3886998-3887017	None:intergenic	30.0%
ATATAGTTTAGGGACCAAAT+AGG	+	chr6_4:3887057-3887076	Msa0971800:intron	30.0%
CTCATAAGAGAAGTAATTGA+AGG	-	chr6_4:3887230-3887249	None:intergenic	30.0%
TTCTCTTATGAGAAGAAGAA+GGG	+	chr6_4:3887238-3887257	Msa0971800:intron	30.0%
GGAATTTAACAAGAAGCTAA+AGG	+	chr6_4:3887309-3887328	Msa0971800:CDS	30.0%
ATGAACTAATCAGAAATGCA+AGG	+	chr6_4:3887404-3887423	Msa0971800:intron	30.0%
GGGTCGAAAGAAATAATAAA+TGG	+	chr6_4:3887904-3887923	Msa0971800:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	3886241	3888080	3886241	ID=Msa0971800;Name=Msa0971800
chr6_4	mRNA	3886241	3888080	3886241	ID=Msa0971800-mRNA-1;Parent=Msa0971800;Name=Msa0971800-mRNA-1;_AED=0.43;_eAED=0.43;_QI=401\|0\|0.33\|1\|1\|1\|3\|0\|174
chr6_4	exon	3886241	3886830	3886241	ID=Msa0971800-mRNA-1:exon:1727;Parent=Msa0971800-mRNA-1
chr6_4	exon	3887256	3887389	3887256	ID=Msa0971800-mRNA-1:exon:1728;Parent=Msa0971800-mRNA-1
chr6_4	exon	3887879	3888080	3887879	ID=Msa0971800-mRNA-1:exon:1729;Parent=Msa0971800-mRNA-1
chr6_4	five_prime_UTR	3886241	3886641	3886241	ID=Msa0971800-mRNA-1:five_prime_utr;Parent=Msa0971800-mRNA-1
chr6_4	CDS	3886642	3886830	3886642	ID=Msa0971800-mRNA-1:cds;Parent=Msa0971800-mRNA-1
chr6_4	CDS	3887256	3887389	3887256	ID=Msa0971800-mRNA-1:cds;Parent=Msa0971800-mRNA-1
chr6_4	CDS	3887879	3888080	3887879	ID=Msa0971800-mRNA-1:cds;Parent=Msa0971800-mRNA-1

Gene Sequence

>Msa0971800

ATGAATGATAATCCAGGGACAGAACCACCTTTCAGAAGTGGTCTTCCAAGGCCTGAGGACTTCTCTAAGGCACTTTACACGATTGATATTGGACAAAATGATCTTGCCTATGGTTTTCTACACACTTCAGAAGAACAAGTTCAAAGGTCAATTCCTGAAATATTGAGCCAATTCTCCCAAGCAGTGAAGAAGGGTAACCTAGATGCCAATGGCTGTGTGAAACCTCAGAACAAAATAGCTCAGGAATTTAACAAGAAGCTAAAGGACCAAGTGTCTCAACTAAGGAGAAAACTCTCATTGGCCAAATTTACATATGTTGATATTTACACCGGTTACCGCATAAACTGTGGGTCGAAAGAAATAATAAATGGAACTGTTAACAGAAATCCATGTACAAATCCTTCTCAACATATTATTTGGGATGGCATACACTACTCCCAAAGGGCAAACCAATTGATTGCTGAAAAAATTATCAACGGATCCTTCTCTGATCCACTAGTTCCAATTGGAAAGGCATGTTTATAA

Protein sequence

>Msa0971800

MNDNPGTEPPFRSGLPRPEDFSKALYTIDIGQNDLAYGFLHTSEEQVQRSIPEILSQFSQAVKKGNLDANGCVKPQNKIAQEFNKKLKDQVSQLRRKLSLAKFTYVDIYTGYRINCGSKEIINGTVNRNPCTNPSQHIIWDGIHYSQRANQLIAEKIINGSFSDPLVPIGKACL*