Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002230 | Msa0298460 | 0.842890 | 1.960837e-58 | -8.615850e-47 |
| Msa0002240 | Msa0298460 | 0.804236 | 2.379752e-49 | -8.615850e-47 |
| Msa0014710 | Msa0298460 | 0.823444 | 1.380898e-53 | -8.615850e-47 |
| Msa0021210 | Msa0298460 | 0.803779 | 2.962075e-49 | -8.615850e-47 |
| Msa0037880 | Msa0298460 | 0.802171 | 6.367181e-49 | -8.615850e-47 |
| Msa0114430 | Msa0298460 | 0.809360 | 1.966069e-50 | -8.615850e-47 |
| Msa0150270 | Msa0298460 | 0.803152 | 3.995190e-49 | -8.615850e-47 |
| Msa0171140 | Msa0298460 | 0.873269 | 1.675476e-67 | -8.615850e-47 |
| Msa0180500 | Msa0298460 | 0.827434 | 1.568265e-54 | -8.615850e-47 |
| Msa0220580 | Msa0298460 | 0.802041 | 6.770680e-49 | -8.615850e-47 |
| Msa0223260 | Msa0298460 | 0.813994 | 1.930942e-51 | -8.615850e-47 |
| Msa0226180 | Msa0298460 | 0.809771 | 1.605110e-50 | -8.615850e-47 |
| Msa0242430 | Msa0298460 | 0.812948 | 3.278987e-51 | -8.615850e-47 |
| Msa0255080 | Msa0298460 | 0.804618 | 1.981236e-49 | -8.615850e-47 |
| Msa0259370 | Msa0298460 | 0.817292 | 3.557262e-52 | -8.615850e-47 |
| Msa0278110 | Msa0298460 | 0.920018 | 2.173770e-87 | -8.615850e-47 |
| Msa0298460 | Msa0305190 | 0.808149 | 3.569956e-50 | -8.615850e-47 |
| Msa0298460 | Msa0319170 | 0.807810 | 4.213791e-50 | -8.615850e-47 |
| Msa0298460 | Msa0405370 | 0.801163 | 1.025014e-48 | -8.615850e-47 |
| Msa0298460 | Msa0424320 | 0.809180 | 2.149767e-50 | -8.615850e-47 |
| Msa0298460 | Msa0425790 | 0.830166 | 3.422995e-55 | -8.615850e-47 |
| Msa0298460 | Msa0453330 | 0.802490 | 5.473582e-49 | -8.615850e-47 |
| Msa0298460 | Msa0523940 | 0.832847 | 7.482088e-56 | -8.615850e-47 |
| Msa0298460 | Msa0545700 | 0.817021 | 4.091718e-52 | -8.615850e-47 |
| Msa0298460 | Msa0663240 | 0.810015 | 1.422174e-50 | -8.615850e-47 |
| Msa0298460 | Msa0688480 | 0.820078 | 8.293025e-53 | -8.615850e-47 |
| Msa0298460 | Msa0701010 | 0.812810 | 3.514513e-51 | -8.615850e-47 |
| Msa0298460 | Msa0739280 | 0.804733 | 1.874453e-49 | -8.615850e-47 |
| Msa0298460 | Msa0750650 | 0.810064 | 1.388178e-50 | -8.615850e-47 |
| Msa0298460 | Msa0760130 | 0.803680 | 3.105696e-49 | -8.615850e-47 |
| Msa0298460 | Msa0768290 | 0.849285 | 3.566358e-60 | -8.615850e-47 |
| Msa0298460 | Msa0768370 | 0.836061 | 1.166914e-56 | -8.615850e-47 |
| Msa0298460 | Msa0820850 | 0.806549 | 7.794438e-50 | -8.615850e-47 |
| Msa0298460 | Msa0832040 | 0.807464 | 4.991270e-50 | -8.615850e-47 |
| Msa0298460 | Msa0842650 | 0.804787 | 1.826398e-49 | -8.615850e-47 |
| Msa0298460 | Msa0844420 | 0.801837 | 7.456001e-49 | -8.615850e-47 |
| Msa0298460 | Msa0844490 | 0.820657 | 6.107720e-53 | -8.615850e-47 |
| Msa0298460 | Msa0849030 | 0.821280 | 4.392160e-53 | -8.615850e-47 |
| Msa0298460 | Msa0857640 | 0.808966 | 2.388483e-50 | -8.615850e-47 |
| Msa0298460 | Msa0861130 | 0.807477 | 4.959084e-50 | -8.615850e-47 |
| Msa0298460 | Msa0899450 | 0.811636 | 6.339593e-51 | -8.615850e-47 |
| Msa0298460 | Msa0927380 | 0.825834 | 3.776950e-54 | -8.615850e-47 |
| Msa0298460 | Msa0964900 | 0.825355 | 4.903282e-54 | -8.615850e-47 |
| Msa0298460 | Msa0969520 | 0.813718 | 2.221039e-51 | -8.615850e-47 |
| Msa0298460 | Msa0969670 | 0.801165 | 1.023929e-48 | -8.615850e-47 |
| Msa0298460 | Msa1000860 | 0.808773 | 2.626283e-50 | -8.615850e-47 |
| Msa0298460 | Msa1137570 | 0.828159 | 1.049864e-54 | -8.615850e-47 |
| Msa0298460 | Msa1156020 | 0.818212 | 2.205615e-52 | -8.615850e-47 |
| Msa0298460 | Msa1178110 | 0.806664 | 7.370190e-50 | -8.615850e-47 |
| Msa0298460 | Msa1227730 | 0.801272 | 9.737672e-49 | -8.615850e-47 |
| Msa0298460 | Msa1233890 | 0.829376 | 5.330043e-55 | -8.615850e-47 |
| Msa0298460 | Msa1237980 | 0.816742 | 4.728146e-52 | -8.615850e-47 |
| Msa0298460 | Msa1296280 | 0.811652 | 6.291228e-51 | -8.615850e-47 |
| Msa0298460 | Msa1306760 | 0.926904 | 2.465641e-91 | -8.615850e-47 |
| Msa0298460 | Msa1306850 | 0.804314 | 2.293122e-49 | -8.615850e-47 |
| Msa0298460 | Msa1359040 | 0.805843 | 1.097703e-49 | -8.615850e-47 |
| Msa0298460 | Msa1366810 | 0.819074 | 1.405958e-52 | -8.615850e-47 |
| Msa0298460 | Msa1366970 | 0.827865 | 1.235627e-54 | -8.615850e-47 |
| Msa0298460 | Msa1394310 | 0.814238 | 1.705856e-51 | -8.615850e-47 |
| Msa0298460 | Msa1427230 | 0.807367 | 5.232453e-50 | -8.615850e-47 |
| Msa0298460 | Msa1440810 | 0.802705 | 4.942058e-49 | -8.615850e-47 |
| Msa0298460 | Msa1443060 | 0.802594 | 5.208725e-49 | -8.615850e-47 |
| Msa0298460 | Msa1451620 | -0.811000 | 8.714184e-51 | -8.615850e-47 |
| Msa0298460 | Msa1460830 | 0.803684 | 3.098958e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 32 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAAATGAAGAACATAAAA+TGG | 0.254405 | 2_3:-52468975 | Msa0298460:CDS |
| CCGGCTTCAGAGGTCATTTC+CGG | 0.310570 | 2_3:-52469997 | Msa0298460:CDS |
| CAGCACTTCAACTACTTGTT+GGG | 0.337129 | 2_3:-52467883 | Msa0298460:CDS |
| AATATATGGTTTCAAAAGGT+TGG | 0.371174 | 2_3:-52467578 | Msa0298460:three_prime_UTR |
| TTGGCAGAATAGAGGATTGT+TGG | 0.410840 | 2_3:-52469030 | Msa0298460:intron |
| GCAGCACTTCAACTACTTGT+TGG | 0.416835 | 2_3:-52467884 | Msa0298460:intron |
| CTTCAACTTTCAGTTGCAAA+AGG | 0.428853 | 2_3:-52468441 | Msa0298460:CDS |
| TTTGAATATATGGTTTCAAA+AGG | 0.435804 | 2_3:-52467582 | Msa0298460:three_prime_UTR |
| GGTTGTCCGCGGTGGTTGGC+CGG | 0.442271 | 2_3:+52469978 | None:intergenic |
| CAGAATAGAGGATTGTTGGC+TGG | 0.469482 | 2_3:-52469026 | Msa0298460:CDS |
| AAATAAAATTGAAGAGAAGA+TGG | 0.475496 | 2_3:-52467831 | Msa0298460:CDS |
| AGAATAGAGGATTGTTGGCT+GGG | 0.480714 | 2_3:-52469025 | Msa0298460:CDS |
| GAAAACCTAGCAAATAAAAG+TGG | 0.503691 | 2_3:-52468360 | Msa0298460:intron |
| CGGTGGTTGTCCGCGGTGGT+TGG | 0.504633 | 2_3:+52469974 | None:intergenic |
| ATCTTGTGAAGATTTCTGCT+TGG | 0.511495 | 2_3:-52467644 | Msa0298460:three_prime_UTR |
| CCGGAAATGACCTCTGAAGC+CGG | 0.528005 | 2_3:+52469997 | None:intergenic |
| ACCGCGGACAACCACCGTAC+CGG | 0.544500 | 2_3:-52469968 | Msa0298460:CDS |
| TTTGCAACTGAAAGTTGAAG+TGG | 0.554271 | 2_3:+52468444 | None:intergenic |
| ATAAATAAATTACTCCGGTA+CGG | 0.556420 | 2_3:+52469954 | None:intergenic |
| AGAAATGATGAGGAAGATCA+AGG | 0.559760 | 2_3:+52467722 | None:intergenic |
| TTTCAGACCGCCGGCTTCAG+AGG | 0.565037 | 2_3:-52470007 | None:intergenic |
| GTGAGGGAAGAGAAATGATG+AGG | 0.581781 | 2_3:+52467712 | None:intergenic |
| GAATAGAGGATTGTTGGCTG+GGG | 0.582566 | 2_3:-52469024 | Msa0298460:CDS |
| CTGCTTGGAAACAGACAAGT+GGG | 0.595091 | 2_3:-52467629 | Msa0298460:three_prime_UTR |
| TCCGGTACGGTGGTTGTCCG+CGG | 0.602090 | 2_3:+52469967 | None:intergenic |
| TACAAAATAGAAGTGAAGAG+TGG | 0.617847 | 2_3:-52467787 | Msa0298460:CDS |
| GGTACGGTGGTTGTCCGCGG+TGG | 0.629805 | 2_3:+52469970 | None:intergenic |
| TCTGCTTGGAAACAGACAAG+TGG | 0.647380 | 2_3:-52467630 | Msa0298460:three_prime_UTR |
| AATAGAGGATTGTTGGCTGG+GGG | 0.673456 | 2_3:-52469023 | Msa0298460:CDS |
| AATAAATTACTCCGGTACGG+TGG | 0.683152 | 2_3:+52469957 | None:intergenic |
| GAAATGACCTCTGAAGCCGG+CGG | 0.757401 | 2_3:+52470000 | None:intergenic |
| TCATTTCCGGCCAACCACCG+CGG | 0.758942 | 2_3:-52469984 | Msa0298460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAATAAATTACTC+CGG | + | chr2_3:52467631-52467650 | None:intergenic | 10.0% |
| !! | AAAAAATAAATAAATTACTC+CGG | + | chr2_3:52467631-52467650 | None:intergenic | 10.0% |
| !! | AAAATCAAATCATAATGATT+TGG | + | chr2_3:52467747-52467766 | None:intergenic | 15.0% |
| !!! | ACATATTTATTTTTTTGTGA+GGG | + | chr2_3:52467864-52467883 | None:intergenic | 15.0% |
| !!! | AACATATTTATTTTTTTGTG+AGG | + | chr2_3:52467865-52467884 | None:intergenic | 15.0% |
| !! | AAATAAATATGTTATCACTT+TGG | - | chr2_3:52467872-52467891 | Msa0298460:CDS | 15.0% |
| !! | AATAAAAAACATAATTTGGT+AGG | - | chr2_3:52468092-52468111 | Msa0298460:intron | 15.0% |
| !! | TTCTTTCAACAAAAAAAAAA+GGG | + | chr2_3:52468154-52468173 | None:intergenic | 15.0% |
| !!! | ACAAGTTAATTTTTTTTTAC+AGG | - | chr2_3:52469109-52469128 | Msa0298460:intron | 15.0% |
| !! | AGAATTACTAAATTACTAAT+TGG | + | chr2_3:52469446-52469465 | None:intergenic | 15.0% |
| !! | AAAATCAAATCATAATGATT+TGG | + | chr2_3:52467747-52467766 | None:intergenic | 15.0% |
| !!! | ACATATTTATTTTTTTGTGA+GGG | + | chr2_3:52467864-52467883 | None:intergenic | 15.0% |
| !!! | AACATATTTATTTTTTTGTG+AGG | + | chr2_3:52467865-52467884 | None:intergenic | 15.0% |
| !! | AAATAAATATGTTATCACTT+TGG | - | chr2_3:52467872-52467891 | Msa0298460:CDS | 15.0% |
| !! | AATAAAAAACATAATTTGGT+AGG | - | chr2_3:52468092-52468111 | Msa0298460:intron | 15.0% |
| !! | TTCTTTCAACAAAAAAAAAA+GGG | + | chr2_3:52468154-52468173 | None:intergenic | 15.0% |
| !!! | ACAAGTTAATTTTTTTTTAC+AGG | - | chr2_3:52469109-52469128 | Msa0298460:intron | 15.0% |
| !! | AGAATTACTAAATTACTAAT+TGG | + | chr2_3:52469446-52469465 | None:intergenic | 15.0% |
| !!! | TTTTTTTTCTCTACTTTCTT+TGG | - | chr2_3:52468036-52468055 | Msa0298460:intron | 20.0% |
| !! | CTTCTTTCAACAAAAAAAAA+AGG | + | chr2_3:52468155-52468174 | None:intergenic | 20.0% |
| !! | GATTCATAGATAAACTTAAA+TGG | - | chr2_3:52468206-52468225 | Msa0298460:intron | 20.0% |
| !!! | TTTTATTTCCTCATTCTTAA+TGG | - | chr2_3:52468255-52468274 | Msa0298460:intron | 20.0% |
| !!! | ATAAAAGTGGTTTAAAATCA+AGG | - | chr2_3:52469230-52469249 | Msa0298460:intron | 20.0% |
| !! | AAATAAAATTGAAGAGAAGA+TGG | - | chr2_3:52469746-52469765 | Msa0298460:intron | 20.0% |
| !! | TTTGAATATATGGTTTCAAA+AGG | - | chr2_3:52469995-52470014 | Msa0298460:CDS | 20.0% |
| !!! | TTTTTTTTCTCTACTTTCTT+TGG | - | chr2_3:52468036-52468055 | Msa0298460:intron | 20.0% |
| !! | CTTCTTTCAACAAAAAAAAA+AGG | + | chr2_3:52468155-52468174 | None:intergenic | 20.0% |
| !! | GATTCATAGATAAACTTAAA+TGG | - | chr2_3:52468206-52468225 | Msa0298460:intron | 20.0% |
| !!! | TTTTATTTCCTCATTCTTAA+TGG | - | chr2_3:52468255-52468274 | Msa0298460:intron | 20.0% |
| !!! | ATAAAAGTGGTTTAAAATCA+AGG | - | chr2_3:52469230-52469249 | Msa0298460:intron | 20.0% |
| !! | AAATAAAATTGAAGAGAAGA+TGG | - | chr2_3:52469746-52469765 | Msa0298460:intron | 20.0% |
| !! | TTTGAATATATGGTTTCAAA+AGG | - | chr2_3:52469995-52470014 | Msa0298460:CDS | 20.0% |
| ! | ATAAATAAATTACTCCGGTA+CGG | + | chr2_3:52467626-52467645 | None:intergenic | 25.0% |
| !! | TGGTAAATTCATTTTAGACA+TGG | - | chr2_3:52467676-52467695 | Msa0298460:three_prime_UTR | 25.0% |
| ! | TGCATTATGTGTATTCATAT+TGG | - | chr2_3:52467959-52467978 | Msa0298460:intron | 25.0% |
| ! | ACAAATAGTCTTTCTTGAAA+GGG | + | chr2_3:52468289-52468308 | None:intergenic | 25.0% |
| ! | AACAAATAGTCTTTCTTGAA+AGG | + | chr2_3:52468290-52468309 | None:intergenic | 25.0% |
| !!! | ATTTTTATTTGGCAGAATAG+AGG | - | chr2_3:52468539-52468558 | Msa0298460:intron | 25.0% |
| !! | TTTTATGTTCTTCATTTTGC+AGG | + | chr2_3:52468602-52468621 | None:intergenic | 25.0% |
| ! | GCAAAATGAAGAACATAAAA+TGG | - | chr2_3:52468602-52468621 | Msa0298460:intron | 25.0% |
| !! | TTTTCCTCTTGAAATGTTTT+TGG | - | chr2_3:52468689-52468708 | Msa0298460:intron | 25.0% |
| !!! | TTAAACCACTTTTATTTGCT+AGG | + | chr2_3:52469225-52469244 | None:intergenic | 25.0% |
| !! | TTTCAGTATTATTTTCTTGC+AGG | + | chr2_3:52469388-52469407 | None:intergenic | 25.0% |
| !!! | TCTCTTCAATTTTATTTTGC+AGG | + | chr2_3:52469743-52469762 | None:intergenic | 25.0% |
| !! | ATGTGATTTTTAACAAGTGA+GGG | + | chr2_3:52469884-52469903 | None:intergenic | 25.0% |
| !! | GGAAAGTGATTTTGAATATA+TGG | - | chr2_3:52469985-52470004 | Msa0298460:CDS | 25.0% |
| ! | AATATATGGTTTCAAAAGGT+TGG | - | chr2_3:52469999-52470018 | Msa0298460:CDS | 25.0% |
| ! | ATAAATAAATTACTCCGGTA+CGG | + | chr2_3:52467626-52467645 | None:intergenic | 25.0% |
| !! | TGGTAAATTCATTTTAGACA+TGG | - | chr2_3:52467676-52467695 | Msa0298460:three_prime_UTR | 25.0% |
| ! | TGCATTATGTGTATTCATAT+TGG | - | chr2_3:52467959-52467978 | Msa0298460:intron | 25.0% |
| ! | ACAAATAGTCTTTCTTGAAA+GGG | + | chr2_3:52468289-52468308 | None:intergenic | 25.0% |
| ! | AACAAATAGTCTTTCTTGAA+AGG | + | chr2_3:52468290-52468309 | None:intergenic | 25.0% |
| !!! | ATTTTTATTTGGCAGAATAG+AGG | - | chr2_3:52468539-52468558 | Msa0298460:intron | 25.0% |
| !! | TTTTATGTTCTTCATTTTGC+AGG | + | chr2_3:52468602-52468621 | None:intergenic | 25.0% |
| ! | GCAAAATGAAGAACATAAAA+TGG | - | chr2_3:52468602-52468621 | Msa0298460:intron | 25.0% |
| !! | TTTTCCTCTTGAAATGTTTT+TGG | - | chr2_3:52468689-52468708 | Msa0298460:intron | 25.0% |
| !!! | TTAAACCACTTTTATTTGCT+AGG | + | chr2_3:52469225-52469244 | None:intergenic | 25.0% |
| !! | TTTCAGTATTATTTTCTTGC+AGG | + | chr2_3:52469388-52469407 | None:intergenic | 25.0% |
| !!! | TCTCTTCAATTTTATTTTGC+AGG | + | chr2_3:52469743-52469762 | None:intergenic | 25.0% |
| !! | ATGTGATTTTTAACAAGTGA+GGG | + | chr2_3:52469884-52469903 | None:intergenic | 25.0% |
| !! | GGAAAGTGATTTTGAATATA+TGG | - | chr2_3:52469985-52470004 | Msa0298460:CDS | 25.0% |
| ! | AATATATGGTTTCAAAAGGT+TGG | - | chr2_3:52469999-52470018 | Msa0298460:CDS | 25.0% |
| AATGAATTTACCAAGAAGAG+AGG | + | chr2_3:52467669-52467688 | None:intergenic | 30.0% | |
| ! | CTTGATTTCTAGATTTGAAC+TGG | + | chr2_3:52467792-52467811 | None:intergenic | 30.0% |
| CAACAAAAAAAAAAGGGTCA+AGG | + | chr2_3:52468148-52468167 | None:intergenic | 30.0% | |
| AAACATGTCCATTAAGAATG+AGG | + | chr2_3:52468266-52468285 | None:intergenic | 30.0% | |
| GAAAAGAATATGACACTTTC+AGG | + | chr2_3:52468367-52468386 | None:intergenic | 30.0% | |
| AGATCCAAAAACATTTCAAG+AGG | + | chr2_3:52468696-52468715 | None:intergenic | 30.0% | |
| CAGCAGAAAGTTATACTTAA+CGG | - | chr2_3:52468760-52468779 | Msa0298460:intron | 30.0% | |
| AGCAGAAAGTTATACTTAAC+GGG | - | chr2_3:52468761-52468780 | Msa0298460:intron | 30.0% | |
| GATCAGAAAAAACAAAGAAG+AGG | - | chr2_3:52468953-52468972 | Msa0298460:intron | 30.0% | |
| GATCAGAAAAAACAAAGAAG+AGG | - | chr2_3:52468953-52468972 | Msa0298460:intron | 30.0% | |
| !! | ATTAACTTGTCAGATCTACA+AGG | + | chr2_3:52469099-52469118 | None:intergenic | 30.0% |
| GAAAACCTAGCAAATAAAAG+TGG | - | chr2_3:52469217-52469236 | Msa0298460:intron | 30.0% | |
| CATAAATTCTCAACAAAGCA+AGG | + | chr2_3:52469416-52469435 | None:intergenic | 30.0% | |
| TGATCTAGAAATGTTATTGC+AGG | + | chr2_3:52469540-52469559 | None:intergenic | 30.0% | |
| ! | ACTCTTCACTTCTATTTTGT+AGG | + | chr2_3:52469791-52469810 | None:intergenic | 30.0% |
| TACAAAATAGAAGTGAAGAG+TGG | - | chr2_3:52469790-52469809 | Msa0298460:intron | 30.0% | |
| ! | GATGTGATTTTTAACAAGTG+AGG | + | chr2_3:52469885-52469904 | None:intergenic | 30.0% |
| AAGTGGGAATGAAAAATATG+AGG | - | chr2_3:52469964-52469983 | Msa0298460:intron | 30.0% | |
| AATGAATTTACCAAGAAGAG+AGG | + | chr2_3:52467669-52467688 | None:intergenic | 30.0% | |
| ! | CTTGATTTCTAGATTTGAAC+TGG | + | chr2_3:52467792-52467811 | None:intergenic | 30.0% |
| CAACAAAAAAAAAAGGGTCA+AGG | + | chr2_3:52468148-52468167 | None:intergenic | 30.0% | |
| AAACATGTCCATTAAGAATG+AGG | + | chr2_3:52468266-52468285 | None:intergenic | 30.0% | |
| GAAAAGAATATGACACTTTC+AGG | + | chr2_3:52468367-52468386 | None:intergenic | 30.0% | |
| AGATCCAAAAACATTTCAAG+AGG | + | chr2_3:52468696-52468715 | None:intergenic | 30.0% | |
| CAGCAGAAAGTTATACTTAA+CGG | - | chr2_3:52468760-52468779 | Msa0298460:intron | 30.0% | |
| AGCAGAAAGTTATACTTAAC+GGG | - | chr2_3:52468761-52468780 | Msa0298460:intron | 30.0% | |
| GATCAGAAAAAACAAAGAAG+AGG | - | chr2_3:52468953-52468972 | Msa0298460:intron | 30.0% | |
| GATCAGAAAAAACAAAGAAG+AGG | - | chr2_3:52468953-52468972 | Msa0298460:intron | 30.0% | |
| !! | ATTAACTTGTCAGATCTACA+AGG | + | chr2_3:52469099-52469118 | None:intergenic | 30.0% |
| GAAAACCTAGCAAATAAAAG+TGG | - | chr2_3:52469217-52469236 | Msa0298460:intron | 30.0% | |
| CATAAATTCTCAACAAAGCA+AGG | + | chr2_3:52469416-52469435 | None:intergenic | 30.0% | |
| TGATCTAGAAATGTTATTGC+AGG | + | chr2_3:52469540-52469559 | None:intergenic | 30.0% | |
| ! | ACTCTTCACTTCTATTTTGT+AGG | + | chr2_3:52469791-52469810 | None:intergenic | 30.0% |
| TACAAAATAGAAGTGAAGAG+TGG | - | chr2_3:52469790-52469809 | Msa0298460:intron | 30.0% | |
| ! | GATGTGATTTTTAACAAGTG+AGG | + | chr2_3:52469885-52469904 | None:intergenic | 30.0% |
| AAGTGGGAATGAAAAATATG+AGG | - | chr2_3:52469964-52469983 | Msa0298460:intron | 30.0% | |
| TCTAGATTTGAACTGGACAA+AGG | + | chr2_3:52467785-52467804 | None:intergenic | 35.0% | |
| CGTTAAGTATAACTTTCTGC+TGG | + | chr2_3:52468762-52468781 | None:intergenic | 35.0% | |
| CTTCAGCAAACTACAAAGAA+AGG | + | chr2_3:52468846-52468865 | None:intergenic | 35.0% | |
| TTTGCAACTGAAAGTTGAAG+TGG | + | chr2_3:52469136-52469155 | None:intergenic | 35.0% | |
| CTTCAACTTTCAGTTGCAAA+AGG | - | chr2_3:52469136-52469155 | Msa0298460:intron | 35.0% | |
| GTTATTGCAGGAAAGTTGAA+TGG | + | chr2_3:52469528-52469547 | None:intergenic | 35.0% | |
| AGAAATGATGAGGAAGATCA+AGG | + | chr2_3:52469858-52469877 | None:intergenic | 35.0% | |
| ATCTTGTGAAGATTTCTGCT+TGG | - | chr2_3:52469933-52469952 | Msa0298460:intron | 35.0% | |
| TCTAGATTTGAACTGGACAA+AGG | + | chr2_3:52467785-52467804 | None:intergenic | 35.0% | |
| CGTTAAGTATAACTTTCTGC+TGG | + | chr2_3:52468762-52468781 | None:intergenic | 35.0% | |
| CTTCAGCAAACTACAAAGAA+AGG | + | chr2_3:52468846-52468865 | None:intergenic | 35.0% | |
| TTTGCAACTGAAAGTTGAAG+TGG | + | chr2_3:52469136-52469155 | None:intergenic | 35.0% | |
| CTTCAACTTTCAGTTGCAAA+AGG | - | chr2_3:52469136-52469155 | Msa0298460:intron | 35.0% | |
| GTTATTGCAGGAAAGTTGAA+TGG | + | chr2_3:52469528-52469547 | None:intergenic | 35.0% | |
| AGAAATGATGAGGAAGATCA+AGG | + | chr2_3:52469858-52469877 | None:intergenic | 35.0% | |
| ATCTTGTGAAGATTTCTGCT+TGG | - | chr2_3:52469933-52469952 | Msa0298460:intron | 35.0% | |
| AATAAATTACTCCGGTACGG+TGG | + | chr2_3:52467623-52467642 | None:intergenic | 40.0% | |
| AGATCATCAACCTCTCTTCT+TGG | - | chr2_3:52467656-52467675 | Msa0298460:three_prime_UTR | 40.0% | |
| TATGACACTTTCAGGACTCA+TGG | + | chr2_3:52468359-52468378 | None:intergenic | 40.0% | |
| TTGGCAGAATAGAGGATTGT+TGG | - | chr2_3:52468547-52468566 | Msa0298460:intron | 40.0% | |
| ! | AGAATAGAGGATTGTTGGCT+GGG | - | chr2_3:52468552-52468571 | Msa0298460:intron | 40.0% |
| ACTACAAAGAAAGGAGACAC+TGG | + | chr2_3:52468837-52468856 | None:intergenic | 40.0% | |
| TCTTGCAGGAAACGTTGAAT+TGG | + | chr2_3:52469374-52469393 | None:intergenic | 40.0% | |
| CAGCACTTCAACTACTTGTT+GGG | - | chr2_3:52469694-52469713 | Msa0298460:intron | 40.0% | |
| AATAAATTACTCCGGTACGG+TGG | + | chr2_3:52467623-52467642 | None:intergenic | 40.0% | |
| AGATCATCAACCTCTCTTCT+TGG | - | chr2_3:52467656-52467675 | Msa0298460:three_prime_UTR | 40.0% | |
| TATGACACTTTCAGGACTCA+TGG | + | chr2_3:52468359-52468378 | None:intergenic | 40.0% | |
| TTGGCAGAATAGAGGATTGT+TGG | - | chr2_3:52468547-52468566 | Msa0298460:intron | 40.0% | |
| ! | AGAATAGAGGATTGTTGGCT+GGG | - | chr2_3:52468552-52468571 | Msa0298460:intron | 40.0% |
| ACTACAAAGAAAGGAGACAC+TGG | + | chr2_3:52468837-52468856 | None:intergenic | 40.0% | |
| TCTTGCAGGAAACGTTGAAT+TGG | + | chr2_3:52469374-52469393 | None:intergenic | 40.0% | |
| CAGCACTTCAACTACTTGTT+GGG | - | chr2_3:52469694-52469713 | Msa0298460:intron | 40.0% | |
| TGTTGAAAGAAGCCTGCTAC+TGG | - | chr2_3:52468163-52468182 | Msa0298460:intron | 45.0% | |
| GTTGAAAGAAGCCTGCTACT+GGG | - | chr2_3:52468164-52468183 | Msa0298460:intron | 45.0% | |
| CAGAATAGAGGATTGTTGGC+TGG | - | chr2_3:52468551-52468570 | Msa0298460:intron | 45.0% | |
| ! | GAATAGAGGATTGTTGGCTG+GGG | - | chr2_3:52468553-52468572 | Msa0298460:intron | 45.0% |
| ! | AATAGAGGATTGTTGGCTGG+GGG | - | chr2_3:52468554-52468573 | Msa0298460:intron | 45.0% |
| GCAGCACTTCAACTACTTGT+TGG | - | chr2_3:52469693-52469712 | Msa0298460:intron | 45.0% | |
| GTGAGGGAAGAGAAATGATG+AGG | + | chr2_3:52469868-52469887 | None:intergenic | 45.0% | |
| TCTGCTTGGAAACAGACAAG+TGG | - | chr2_3:52469947-52469966 | Msa0298460:intron | 45.0% | |
| CTGCTTGGAAACAGACAAGT+GGG | - | chr2_3:52469948-52469967 | Msa0298460:intron | 45.0% | |
| TGTTGAAAGAAGCCTGCTAC+TGG | - | chr2_3:52468163-52468182 | Msa0298460:intron | 45.0% | |
| GTTGAAAGAAGCCTGCTACT+GGG | - | chr2_3:52468164-52468183 | Msa0298460:intron | 45.0% | |
| CAGAATAGAGGATTGTTGGC+TGG | - | chr2_3:52468551-52468570 | Msa0298460:intron | 45.0% | |
| ! | GAATAGAGGATTGTTGGCTG+GGG | - | chr2_3:52468553-52468572 | Msa0298460:intron | 45.0% |
| ! | AATAGAGGATTGTTGGCTGG+GGG | - | chr2_3:52468554-52468573 | Msa0298460:intron | 45.0% |
| GCAGCACTTCAACTACTTGT+TGG | - | chr2_3:52469693-52469712 | Msa0298460:intron | 45.0% | |
| GTGAGGGAAGAGAAATGATG+AGG | + | chr2_3:52469868-52469887 | None:intergenic | 45.0% | |
| TCTGCTTGGAAACAGACAAG+TGG | - | chr2_3:52469947-52469966 | Msa0298460:intron | 45.0% | |
| CTGCTTGGAAACAGACAAGT+GGG | - | chr2_3:52469948-52469967 | Msa0298460:intron | 45.0% | |
| !!! | AGTAATTTATTTATTTTTTT+CGG | - | chr2_3:52467632-52467651 | Msa0298460:three_prime_UTR | 5.0% |
| !!! | TTTTAATAAAAAACATAATT+TGG | - | chr2_3:52468088-52468107 | Msa0298460:intron | 5.0% |
| !!! | TAATTTATTTTAAATTTTGT+TGG | - | chr2_3:52468485-52468504 | Msa0298460:intron | 5.0% |
| !!! | AAAGAAAATTTATTTTTATT+TGG | - | chr2_3:52468528-52468547 | Msa0298460:intron | 5.0% |
| !!! | ATATTTTTTCAAAAAAAATT+AGG | - | chr2_3:52469338-52469357 | Msa0298460:intron | 5.0% |
| !! | TATAAATATAAATAATGAAA+AGG | - | chr2_3:52469576-52469595 | Msa0298460:intron | 5.0% |
| !!! | ATAAAATTTTAAAATTAAGT+TGG | + | chr2_3:52469915-52469934 | None:intergenic | 5.0% |
| !!! | AGTAATTTATTTATTTTTTT+CGG | - | chr2_3:52467632-52467651 | Msa0298460:three_prime_UTR | 5.0% |
| !!! | TTTTAATAAAAAACATAATT+TGG | - | chr2_3:52468088-52468107 | Msa0298460:intron | 5.0% |
| !!! | TAATTTATTTTAAATTTTGT+TGG | - | chr2_3:52468485-52468504 | Msa0298460:intron | 5.0% |
| !!! | AAAGAAAATTTATTTTTATT+TGG | - | chr2_3:52468528-52468547 | Msa0298460:intron | 5.0% |
| !!! | ATATTTTTTCAAAAAAAATT+AGG | - | chr2_3:52469338-52469357 | Msa0298460:intron | 5.0% |
| !! | TATAAATATAAATAATGAAA+AGG | - | chr2_3:52469576-52469595 | Msa0298460:intron | 5.0% |
| !!! | ATAAAATTTTAAAATTAAGT+TGG | + | chr2_3:52469915-52469934 | None:intergenic | 5.0% |
| CCATTTAAGCACCCAGTAGC+AGG | + | chr2_3:52468178-52468197 | None:intergenic | 50.0% | |
| CCTGCTACTGGGTGCTTAAA+TGG | - | chr2_3:52468175-52468194 | Msa0298460:intron | 50.0% | |
| CCATTTAAGCACCCAGTAGC+AGG | + | chr2_3:52468178-52468197 | None:intergenic | 50.0% | |
| CCTGCTACTGGGTGCTTAAA+TGG | - | chr2_3:52468175-52468194 | Msa0298460:intron | 50.0% | |
| !! | GAAATGACCTCTGAAGCCGG+CGG | + | chr2_3:52467580-52467599 | None:intergenic | 55.0% |
| !! | CCGGAAATGACCTCTGAAGC+CGG | + | chr2_3:52467583-52467602 | None:intergenic | 55.0% |
| CCGGCTTCAGAGGTCATTTC+CGG | - | chr2_3:52467580-52467599 | Msa0298460:three_prime_UTR | 55.0% | |
| !! | GAAATGACCTCTGAAGCCGG+CGG | + | chr2_3:52467580-52467599 | None:intergenic | 55.0% |
| !! | CCGGAAATGACCTCTGAAGC+CGG | + | chr2_3:52467583-52467602 | None:intergenic | 55.0% |
| CCGGCTTCAGAGGTCATTTC+CGG | - | chr2_3:52467580-52467599 | Msa0298460:three_prime_UTR | 55.0% | |
| TCATTTCCGGCCAACCACCG+CGG | - | chr2_3:52467593-52467612 | Msa0298460:three_prime_UTR | 60.0% | |
| TCATTTCCGGCCAACCACCG+CGG | - | chr2_3:52467593-52467612 | Msa0298460:three_prime_UTR | 60.0% | |
| ACCGCGGACAACCACCGTAC+CGG | - | chr2_3:52467609-52467628 | Msa0298460:three_prime_UTR | 65.0% | |
| TCCGGTACGGTGGTTGTCCG+CGG | + | chr2_3:52467613-52467632 | None:intergenic | 65.0% | |
| ! | GAGGATTGTTGGCTGGGGGC+AGG | - | chr2_3:52468558-52468577 | Msa0298460:intron | 65.0% |
| ACCGCGGACAACCACCGTAC+CGG | - | chr2_3:52467609-52467628 | Msa0298460:three_prime_UTR | 65.0% | |
| TCCGGTACGGTGGTTGTCCG+CGG | + | chr2_3:52467613-52467632 | None:intergenic | 65.0% | |
| ! | GAGGATTGTTGGCTGGGGGC+AGG | - | chr2_3:52468558-52468577 | Msa0298460:intron | 65.0% |
| GGTTGTCCGCGGTGGTTGGC+CGG | + | chr2_3:52467602-52467621 | None:intergenic | 70.0% | |
| CGGTGGTTGTCCGCGGTGGT+TGG | + | chr2_3:52467606-52467625 | None:intergenic | 70.0% | |
| GGTACGGTGGTTGTCCGCGG+TGG | + | chr2_3:52467610-52467629 | None:intergenic | 70.0% | |
| GGTTGTCCGCGGTGGTTGGC+CGG | + | chr2_3:52467602-52467621 | None:intergenic | 70.0% | |
| CGGTGGTTGTCCGCGGTGGT+TGG | + | chr2_3:52467606-52467625 | None:intergenic | 70.0% | |
| GGTACGGTGGTTGTCCGCGG+TGG | + | chr2_3:52467610-52467629 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 52467577 | 52470022 | 52467577 | ID=Msa0298460;Name=Msa0298460 |
| chr2_3 | mRNA | 52467577 | 52470022 | 52467577 | ID=Msa0298460-mRNA-1;Parent=Msa0298460;Name=Msa0298460-mRNA-1;_AED=0.34;_eAED=0.41;_QI=0|0|0.25|1|0|0|4|162|134 |
| chr2_3 | exon | 52467577 | 52467902 | 52467577 | ID=Msa0298460-mRNA-1:exon:16757;Parent=Msa0298460-mRNA-1 |
| chr2_3 | exon | 52468361 | 52468468 | 52468361 | ID=Msa0298460-mRNA-1:exon:16756;Parent=Msa0298460-mRNA-1 |
| chr2_3 | exon | 52468969 | 52469045 | 52468969 | ID=Msa0298460-mRNA-1:exon:16755;Parent=Msa0298460-mRNA-1 |
| chr2_3 | exon | 52469967 | 52470022 | 52469967 | ID=Msa0298460-mRNA-1:exon:16754;Parent=Msa0298460-mRNA-1 |
| chr2_3 | CDS | 52469967 | 52470022 | 52469967 | ID=Msa0298460-mRNA-1:cds;Parent=Msa0298460-mRNA-1 |
| chr2_3 | CDS | 52468969 | 52469045 | 52468969 | ID=Msa0298460-mRNA-1:cds;Parent=Msa0298460-mRNA-1 |
| chr2_3 | CDS | 52468361 | 52468468 | 52468361 | ID=Msa0298460-mRNA-1:cds;Parent=Msa0298460-mRNA-1 |
| chr2_3 | CDS | 52467739 | 52467902 | 52467739 | ID=Msa0298460-mRNA-1:cds;Parent=Msa0298460-mRNA-1 |
| chr2_3 | three_prime_UTR | 52467577 | 52467738 | 52467577 | ID=Msa0298460-mRNA-1:three_prime_utr;Parent=Msa0298460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
