AlfalfaGEDB | Msa0178970

M. sativa cultivar zhongmu-4 / Msa0178970

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0178970	XP_024641248.2	75.510	735	179	1	31	764	16	750	0.0	1175

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0178970	sp\|Q9SY66\|FRS11_ARATH	46.006	676	350	8	30	697	11	679	0.0	624

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0178970	A0A396JX52	75.510	735	179	1	31	764	16	750	0.0	1175

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TFs/TRs:

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Gene ID	Type	Classification
Msa0178970	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006390	Msa0178970	0.810911	9.109982e-51	-8.615850e-47
Msa0017510	Msa0178970	0.800704	1.272076e-48	-8.615850e-47
Msa0018650	Msa0178970	0.821185	4.617218e-53	-8.615850e-47
Msa0028700	Msa0178970	0.826859	2.152904e-54	-8.615850e-47
Msa0032330	Msa0178970	0.871958	4.593709e-67	-8.615850e-47
Msa0062860	Msa0178970	0.881338	2.607280e-70	-8.615850e-47
Msa0105070	Msa0178970	0.809376	1.950683e-50	-8.615850e-47
Msa0112590	Msa0178970	0.808638	2.807291e-50	-8.615850e-47
Msa0115270	Msa0178970	0.835512	1.607437e-56	-8.615850e-47
Msa0116770	Msa0178970	0.814974	1.171912e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0178970	MtrunA17_Chr1g0198761	75.510	735	179	1	31	764	16	750	0.0	1175
Msa0178970	MtrunA17_Chr5g0431001	91.909	482	39	0	1	482	1	482	0.0	932
Msa0178970	MtrunA17_Chr2g0276841	47.680	625	316	5	60	681	69	685	0.0	629
Msa0178970	MtrunA17_Chr2g0294841	42.454	709	380	7	60	747	44	745	0.0	605
Msa0178970	MtrunA17_Chr2g0290391	46.034	643	310	8	61	683	51	676	0.0	574
Msa0178970	MtrunA17_Chr1g0202341	29.472	682	442	15	13	677	10	669	1.48e-85	285
Msa0178970	MtrunA17_Chr5g0448761	31.293	588	380	9	61	634	60	637	4.43e-82	278
Msa0178970	MtrunA17_Chr3g0080351	30.494	587	350	18	61	627	76	624	6.84e-76	263
Msa0178970	MtrunA17_Chr2g0296781	28.905	685	430	20	67	724	3	657	1.09e-75	259
Msa0178970	MtrunA17_Chr2g0329031	27.273	682	446	16	67	734	20	665	1.84e-71	248

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0178970	AT1G10240.2	46.006	676	350	8	30	697	11	679	0.0	624
Msa0178970	AT1G10240.1	46.006	676	350	8	30	697	11	679	0.0	624
Msa0178970	AT5G28530.3	42.185	659	355	6	31	678	27	670	0.0	553
Msa0178970	AT5G28530.2	42.185	659	355	6	31	678	27	670	0.0	553
Msa0178970	AT5G28530.1	42.033	659	360	6	31	678	27	674	0.0	551
Msa0178970	AT5G28530.5	38.367	649	331	8	31	678	27	607	3.72e-152	458
Msa0178970	AT5G28530.4	38.213	649	336	8	31	678	27	611	1.18e-151	457
Msa0178970	AT4G38180.1	31.993	572	371	7	61	625	73	633	1.22e-85	288
Msa0178970	AT4G15090.1	28.447	689	447	17	61	727	51	715	1.80e-81	278
Msa0178970	AT4G15090.5	28.447	689	447	17	61	727	51	715	1.80e-81	278

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Find 130 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAAGGTCGGCCAAA+AGG	0.495104	1_4:-66392805	Msa0178970:CDS
AAAATCTGTCAAACTTGTTT+TGG	0.261322	1_4:+66393561	None:intergenic
AAAGACAAGTGAACGAGAAC+AGG	0.453486	1_4:-66392959	Msa0178970:CDS
AAAGGATCAAGACCAAAAGG+AGG	0.655085	1_4:-66392787	Msa0178970:CDS
AAAGTAATGGTCTCACAGTT+TGG	0.427267	1_4:-66393730	Msa0178970:CDS
AAAGTCCTTCAAATAAGCTA+AGG	0.560983	1_4:+66393654	None:intergenic
AACCGTTATGAGATGCCTCT+TGG	0.448749	1_4:-66394186	Msa0178970:CDS
AACGTCACAGTCATCATTAT+TGG	0.232373	1_4:+66392846	None:intergenic
AACTGGGCAGATAGCGGGAA+AGG	0.478957	1_4:+66395492	None:intergenic
AAGGATCAAGACCAAAAGGA+GGG	0.611165	1_4:-66392786	Msa0178970:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAGCTCATTCACTTTGTT+CGG	-	chr1_4:66392351-66392370	Msa0178970:three_prime_UTR	30.0%
ACACAAACTTAGCTAATTTG+GGG	+	chr1_4:66392517-66392536	None:intergenic	30.0%
TCAAATATTTGCCCTTCAAA+AGG	+	chr1_4:66392759-66392778	None:intergenic	30.0%
GTAGTTACTAAGAGAACAAT+TGG	-	chr1_4:66393122-66393141	Msa0178970:CDS	30.0%
AATTGGCATGGAGAAAAAAT+GGG	-	chr1_4:66393139-66393158	Msa0178970:CDS	30.0%
TTAGAGAAAAAAATAGGCAC+AGG	-	chr1_4:66393323-66393342	Msa0178970:CDS	30.0%
ACAAATTGGAGCATATTGTT+TGG	-	chr1_4:66393501-66393520	Msa0178970:intron	30.0%
CAAATTGGAGCATATTGTTT+GGG	-	chr1_4:66393502-66393521	Msa0178970:intron	30.0%
AATTAAAGAAGCCATTGCAA+TGG	-	chr1_4:66393871-66393890	Msa0178970:CDS	30.0%
AAAGTCCTTCAAATAAGCTA+AGG	+	chr1_4:66394131-66394150	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	66392271	66395533	66392271	ID=Msa0178970;Name=Msa0178970
chr1_4	mRNA	66392271	66395533	66392271	ID=Msa0178970-mRNA-1;Parent=Msa0178970;Name=Msa0178970-mRNA-1;_AED=0.00;_eAED=0.00;_QI=123\|1\|1\|1\|0.5\|0.4\|5\|350\|776
chr1_4	exon	66392271	66393475	66392271	ID=Msa0178970-mRNA-1:exon:21737;Parent=Msa0178970-mRNA-1
chr1_4	exon	66393552	66393995	66393552	ID=Msa0178970-mRNA-1:exon:21736;Parent=Msa0178970-mRNA-1
chr1_4	exon	66394089	66395149	66394089	ID=Msa0178970-mRNA-1:exon:21735;Parent=Msa0178970-mRNA-1
chr1_4	exon	66395372	66395437	66395372	ID=Msa0178970-mRNA-1:exon:21734;Parent=Msa0178970-mRNA-1
chr1_4	exon	66395506	66395533	66395506	ID=Msa0178970-mRNA-1:exon:21733;Parent=Msa0178970-mRNA-1
chr1_4	five_prime_UTR	66395506	66395533	66395506	ID=Msa0178970-mRNA-1:five_prime_utr;Parent=Msa0178970-mRNA-1
chr1_4	five_prime_UTR	66395372	66395437	66395372	ID=Msa0178970-mRNA-1:five_prime_utr;Parent=Msa0178970-mRNA-1
chr1_4	five_prime_UTR	66395121	66395149	66395121	ID=Msa0178970-mRNA-1:five_prime_utr;Parent=Msa0178970-mRNA-1
chr1_4	CDS	66394089	66395120	66394089	ID=Msa0178970-mRNA-1:cds;Parent=Msa0178970-mRNA-1
chr1_4	CDS	66393552	66393995	66393552	ID=Msa0178970-mRNA-1:cds;Parent=Msa0178970-mRNA-1
chr1_4	CDS	66392621	66393475	66392621	ID=Msa0178970-mRNA-1:cds;Parent=Msa0178970-mRNA-1
chr1_4	three_prime_UTR	66392271	66392620	66392271	ID=Msa0178970-mRNA-1:three_prime_utr;Parent=Msa0178970-mRNA-1

Gene Sequence

>Msa0178970

ATGATATCTGAAGTAAGCAATGATGCTAGTGATTGGCCCTTGCCTCAAGTCACTAACATTGATGGGTGGGTTCCTTTTGAAGGGCAAATATTTGAAGATGATGAATATGTAAATTCTTTAACATTTCAAGAGCTACAACATGAACCCTTGCCTCGAGTCAATAACATTGATGAGGGGATTCCTTTTGAAGGGAAAATATTTGAAAGTGATAATGCTGCTTTTGAATTTTATTGTTTATTTGCAAAACAAAATGGATTTTCTATTAGGCGTGATCACATTTATAAATCTCGTAAAAATGTGTCTGAAGAGAATCCATCGGGTGTTTATAAGAGGGAATTTGTTTGTCATCGTGGTGGTATTGGTAAACCACGCAAAACTGTTGAAGTGGAAAATCAAAGGAAACGAAAATCTTCAAGATGTGATTGTAGTGCAAAGATGGTAGTTACTAAGAGAACAATTGGCATGGAGAAAAAATGGGTGGTTAAACATTTCAACAATTCTCACAACCACGAGTTATTGGATGACAAAGAGGTTCAATTTCTTCCTGCTTATCGTAACATTCCAATTGTTGATCAAGATCGCATATTATTATTGTCTAAAGCTGGTTGCCCTGTAAGTCTTATAGCGAGAGTGCTTGAGTTAGAGAAAAAAATAGGCACAGGAAATTTACCATTCTTAGAAAAAGATATTAGAAATTTTATTCAATCATATAGTGGTATTGGTAAAGAAAGTGATGCTTCGGATGTTCTCAGATTGTGCAAAAGTTTGAAAGATCGAGATGAGGCCTTCCAATATGAATTCACAATTGATGAAAGTAACAAATTGGAGCATATTGTTTGGGCATTTGGTGATTCAATTCGCGCATATGAAGCTTTTGGAGATGTTGTAGTTTTTGATACCACATATAGAATAAACCGTTATGAGATGCCTCTTGGAATATGGGTTGGTGTTGATAATCATGGAAATTCAATTTTTTTTGGTTGCGTTCTATTGCGAAATGAGAAGATTTCTTCCTTCGCATGGGCTATAAAGAGTTTCCTAGCTTTTGTGAAAGGAAAATATCCAAAAACAATTCTTACCGATCAAGATCCTTCAATTAAAGAAGCCATTGCAATGGAATTGCCAAACACAAAACATGCATTTTGCATATGGCATATTGTCGCAAAGCTGTCAAGTTGGTTTTCTTTTCCACTAGGTTCGAGATATGATGACTTTAAACATGAGTTTCATAAGGTGTATCATTTAGAATGTGCAGATGATTTTGAACGAGAATGGAAAGTAATGGTCTCACAGTTTGGTTTGGGTGTGGATAAGCATATTGACTTGCTCTTTACCCATCGTAAATTTTGGGCCTTAGCTTATTTGAAGGACTTTTTTTTTGCTGGAATGACAACAACAGGACGCTCAGAATCGATAAATTCATATATAAAAAGATTCTTAGATGCCAAAACAAGTTTGACAGATTTTGTAAATCAAGTTGGTGTTGCTGTCAAAATTAGAAATCAAGCTGGAGAAGAGGCACGAATGCGTCAAAAGTATCATAATCCTCAGATTACAACACATTTTCCTATTGAAGAACATGCCTCGTCTATACTCACACCTTATGCCTTTAAGTTGCTTCAACATGAGATCGAATTATCTGCAAAGTATGCAGCAATTGAAGCTGACAATGGCTCTTATGTTGTGCAACATCATACCAAAGTTGATGGTGGTCGTATAGTAAGTTTGATAAAAGAAGAAGAGTCAATTAATTGTTCTTGTAAAGAGTTTCAATTTTCAGGAATAATATGTAGACATGCAATTCGAGTGCTAATGTTGAAAAATTATTTTGTTCTTCCATCAAAATATCTTCCTTTTCGATGGAGACGAGAAAGTTCATTGATCCCAAAATCTAGTCATGTAATAAACTGCAATGATGGATCCTCTCCCAAATTTCAGTCTCTAATTCGATGTTTGGAAGTCGAATCATTAAAGACAAGTGAACGAGAACAGGTTGCCACAAGAGAGTTAGAAAATATCATCATAAAGATAAAAGGCATGCCTGAAACTCAAGAACATGTGATTGATTTGGAAGCGGATGTTTCCAATAATGATGACTGTGACGTTGAAAATCCTATTGTTTCAAAAACAAAAGGTCGGCCAAAAGGATCAAGACCAAAAGGAGGGGTTGAAGCTGCCAAGAAGCCTCGTCGTTGTCATGTTCCAGATTGTGGTGGAACTAATCACGACTCACGAAACTGTCCAAACAAAAAGAGAAAAATGGAAGTGTTGCCTTCTCAATCTCCTAATAAGTGTGTTTTAATTGGTGTGTCTTGTTCTACTCATGACTAA

Protein sequence

>Msa0178970

MISEVSNDASDWPLPQVTNIDGWVPFEGQIFEDDEYVNSLTFQELQHEPLPRVNNIDEGIPFEGKIFESDNAAFEFYCLFAKQNGFSIRRDHIYKSRKNVSEENPSGVYKREFVCHRGGIGKPRKTVEVENQRKRKSSRCDCSAKMVVTKRTIGMEKKWVVKHFNNSHNHELLDDKEVQFLPAYRNIPIVDQDRILLLSKAGCPVSLIARVLELEKKIGTGNLPFLEKDIRNFIQSYSGIGKESDASDVLRLCKSLKDRDEAFQYEFTIDESNKLEHIVWAFGDSIRAYEAFGDVVVFDTTYRINRYEMPLGIWVGVDNHGNSIFFGCVLLRNEKISSFAWAIKSFLAFVKGKYPKTILTDQDPSIKEAIAMELPNTKHAFCIWHIVAKLSSWFSFPLGSRYDDFKHEFHKVYHLECADDFEREWKVMVSQFGLGVDKHIDLLFTHRKFWALAYLKDFFFAGMTTTGRSESINSYIKRFLDAKTSLTDFVNQVGVAVKIRNQAGEEARMRQKYHNPQITTHFPIEEHASSILTPYAFKLLQHEIELSAKYAAIEADNGSYVVQHHTKVDGGRIVSLIKEEESINCSCKEFQFSGIICRHAIRVLMLKNYFVLPSKYLPFRWRRESSLIPKSSHVINCNDGSSPKFQSLIRCLEVESLKTSEREQVATRELENIIIKIKGMPETQEHVIDLEADVSNNDDCDVENPIVSKTKGRPKGSRPKGGVEAAKKPRRCHVPDCGGTNHDSRNCPNKKRKMEVLPSQSPNKCVLIGVSCSTHD*