Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0178970 | XP_024641248.2 | 75.510 | 735 | 179 | 1 | 31 | 764 | 16 | 750 | 0.0 | 1175 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0178970 | sp|Q9SY66|FRS11_ARATH | 46.006 | 676 | 350 | 8 | 30 | 697 | 11 | 679 | 0.0 | 624 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0178970 | A0A396JX52 | 75.510 | 735 | 179 | 1 | 31 | 764 | 16 | 750 | 0.0 | 1175 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0178970 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006390 | Msa0178970 | 0.810911 | 9.109982e-51 | -8.615850e-47 |
| Msa0017510 | Msa0178970 | 0.800704 | 1.272076e-48 | -8.615850e-47 |
| Msa0018650 | Msa0178970 | 0.821185 | 4.617218e-53 | -8.615850e-47 |
| Msa0028700 | Msa0178970 | 0.826859 | 2.152904e-54 | -8.615850e-47 |
| Msa0032330 | Msa0178970 | 0.871958 | 4.593709e-67 | -8.615850e-47 |
| Msa0062860 | Msa0178970 | 0.881338 | 2.607280e-70 | -8.615850e-47 |
| Msa0105070 | Msa0178970 | 0.809376 | 1.950683e-50 | -8.615850e-47 |
| Msa0112590 | Msa0178970 | 0.808638 | 2.807291e-50 | -8.615850e-47 |
| Msa0115270 | Msa0178970 | 0.835512 | 1.607437e-56 | -8.615850e-47 |
| Msa0116770 | Msa0178970 | 0.814974 | 1.171912e-51 | -8.615850e-47 |
| Msa0157290 | Msa0178970 | 0.801344 | 9.410601e-49 | -8.615850e-47 |
| Msa0165210 | Msa0178970 | 0.814955 | 1.183828e-51 | -8.615850e-47 |
| Msa0165220 | Msa0178970 | 0.808745 | 2.662589e-50 | -8.615850e-47 |
| Msa0178960 | Msa0178970 | 0.960200 | 2.736838e-118 | -8.615850e-47 |
| Msa0178970 | Msa0180500 | 0.820535 | 6.515074e-53 | -8.615850e-47 |
| Msa0178970 | Msa0215320 | -0.805686 | 1.183946e-49 | -8.615850e-47 |
| Msa0178970 | Msa0220740 | 0.806202 | 9.225753e-50 | -8.615850e-47 |
| Msa0178970 | Msa0223010 | 0.813682 | 2.262304e-51 | -8.615850e-47 |
| Msa0178970 | Msa0226890 | 0.806288 | 8.845258e-50 | -8.615850e-47 |
| Msa0178970 | Msa0233300 | 0.810567 | 1.080866e-50 | -8.615850e-47 |
| Msa0178970 | Msa0239800 | 0.801450 | 8.953474e-49 | -8.615850e-47 |
| Msa0178970 | Msa0241640 | 0.811714 | 6.096944e-51 | -8.615850e-47 |
| Msa0178970 | Msa0257460 | 0.806818 | 6.839582e-50 | -8.615850e-47 |
| Msa0178970 | Msa0258760 | 0.818269 | 2.141282e-52 | -8.615850e-47 |
| Msa0178970 | Msa0275000 | 0.804979 | 1.665338e-49 | -8.615850e-47 |
| Msa0178970 | Msa0278110 | 0.820898 | 5.376885e-53 | -8.615850e-47 |
| Msa0178970 | Msa0279790 | 0.821098 | 4.836212e-53 | -8.615850e-47 |
| Msa0178970 | Msa0288100 | 0.801075 | 1.068426e-48 | -8.615850e-47 |
| Msa0178970 | Msa0317290 | 0.826393 | 2.781224e-54 | -8.615850e-47 |
| Msa0178970 | Msa0319170 | 0.800544 | 1.371463e-48 | -8.615850e-47 |
| Msa0178970 | Msa0323080 | 0.804836 | 1.783962e-49 | -8.615850e-47 |
| Msa0178970 | Msa0339620 | 0.815696 | 8.097570e-52 | -8.615850e-47 |
| Msa0178970 | Msa0340450 | 0.811903 | 5.546121e-51 | -8.615850e-47 |
| Msa0178970 | Msa0342750 | 0.805344 | 1.397058e-49 | -8.615850e-47 |
| Msa0178970 | Msa0344830 | 0.827334 | 1.657198e-54 | -8.615850e-47 |
| Msa0178970 | Msa0350990 | 0.854002 | 1.644876e-61 | -8.615850e-47 |
| Msa0178970 | Msa0351030 | 0.849818 | 2.532980e-60 | -8.615850e-47 |
| Msa0178970 | Msa0351080 | 0.806034 | 1.000796e-49 | -8.615850e-47 |
| Msa0178970 | Msa0351100 | 0.819576 | 1.080328e-52 | -8.615850e-47 |
| Msa0178970 | Msa0359030 | 0.812925 | 3.317560e-51 | -8.615850e-47 |
| Msa0178970 | Msa0388950 | 0.803568 | 3.276525e-49 | -8.615850e-47 |
| Msa0178970 | Msa0406880 | 0.822349 | 2.484404e-53 | -8.615850e-47 |
| Msa0178970 | Msa0416300 | 0.806590 | 7.640405e-50 | -8.615850e-47 |
| Msa0178970 | Msa0416650 | 0.833244 | 5.959575e-56 | -8.615850e-47 |
| Msa0178970 | Msa0424320 | 0.846490 | 2.102651e-59 | -8.615850e-47 |
| Msa0178970 | Msa0431690 | 0.822438 | 2.369378e-53 | -8.615850e-47 |
| Msa0178970 | Msa0438200 | 0.815780 | 7.756550e-52 | -8.615850e-47 |
| Msa0178970 | Msa0465150 | 0.825494 | 4.546392e-54 | -8.615850e-47 |
| Msa0178970 | Msa0465200 | 0.815229 | 1.029045e-51 | -8.615850e-47 |
| Msa0178970 | Msa0466390 | 0.812420 | 4.278804e-51 | -8.615850e-47 |
| Msa0178970 | Msa0491220 | 0.801904 | 7.224085e-49 | -8.615850e-47 |
| Msa0178970 | Msa0493000 | 0.815377 | 9.539140e-52 | -8.615850e-47 |
| Msa0178970 | Msa0512750 | 0.830722 | 2.501817e-55 | -8.615850e-47 |
| Msa0178970 | Msa0516750 | 0.839964 | 1.156361e-57 | -8.615850e-47 |
| Msa0178970 | Msa0519000 | 0.831978 | 1.228173e-55 | -8.615850e-47 |
| Msa0178970 | Msa0523940 | 0.858183 | 9.815017e-63 | -8.615850e-47 |
| Msa0178970 | Msa0529040 | 0.801058 | 1.077156e-48 | -8.615850e-47 |
| Msa0178970 | Msa0562440 | 0.846671 | 1.876388e-59 | -8.615850e-47 |
| Msa0178970 | Msa0585230 | 0.805933 | 1.050654e-49 | -8.615850e-47 |
| Msa0178970 | Msa0598780 | 0.805593 | 1.238802e-49 | -8.615850e-47 |
| Msa0178970 | Msa0610430 | 0.807235 | 5.582206e-50 | -8.615850e-47 |
| Msa0178970 | Msa0613440 | 0.802802 | 4.719699e-49 | -8.615850e-47 |
| Msa0178970 | Msa0615740 | 0.816506 | 5.339440e-52 | -8.615850e-47 |
| Msa0178970 | Msa0620960 | 0.802146 | 6.444162e-49 | -8.615850e-47 |
| Msa0178970 | Msa0623080 | 0.807136 | 5.857137e-50 | -8.615850e-47 |
| Msa0178970 | Msa0641670 | 0.828482 | 8.771759e-55 | -8.615850e-47 |
| Msa0178970 | Msa0660300 | 0.804164 | 2.463356e-49 | -8.615850e-47 |
| Msa0178970 | Msa0661650 | 0.804455 | 2.142449e-49 | -8.615850e-47 |
| Msa0178970 | Msa0663240 | 0.802378 | 5.772538e-49 | -8.615850e-47 |
| Msa0178970 | Msa0663920 | 0.806830 | 6.799581e-50 | -8.615850e-47 |
| Msa0178970 | Msa0673460 | 0.809591 | 1.754196e-50 | -8.615850e-47 |
| Msa0178970 | Msa0677790 | 0.821842 | 3.256884e-53 | -8.615850e-47 |
| Msa0178970 | Msa0688480 | 0.810208 | 1.292021e-50 | -8.615850e-47 |
| Msa0178970 | Msa0701010 | 0.851468 | 8.701748e-61 | -8.615850e-47 |
| Msa0178970 | Msa0735170 | 0.802797 | 4.730031e-49 | -8.615850e-47 |
| Msa0178970 | Msa0738500 | 0.838073 | 3.570312e-57 | -8.615850e-47 |
| Msa0178970 | Msa0743720 | 0.825794 | 3.858756e-54 | -8.615850e-47 |
| Msa0178970 | Msa0745790 | 0.800245 | 1.577600e-48 | -8.615850e-47 |
| Msa0178970 | Msa0768290 | 0.816569 | 5.169290e-52 | -8.615850e-47 |
| Msa0178970 | Msa0768370 | 0.815422 | 9.320658e-52 | -8.615850e-47 |
| Msa0178970 | Msa0769980 | 0.803532 | 3.333054e-49 | -8.615850e-47 |
| Msa0178970 | Msa0771720 | 0.819833 | 9.434987e-53 | -8.615850e-47 |
| Msa0178970 | Msa0777230 | 0.818117 | 2.317714e-52 | -8.615850e-47 |
| Msa0178970 | Msa0797170 | 0.812943 | 3.287174e-51 | -8.615850e-47 |
| Msa0178970 | Msa0820850 | 0.809696 | 1.665311e-50 | -8.615850e-47 |
| Msa0178970 | Msa0828940 | 0.808536 | 2.951584e-50 | -8.615850e-47 |
| Msa0178970 | Msa0842650 | 0.814325 | 1.632078e-51 | -8.615850e-47 |
| Msa0178970 | Msa0849030 | 0.858292 | 9.104527e-63 | -8.615850e-47 |
| Msa0178970 | Msa0857640 | 0.815908 | 7.265578e-52 | -8.615850e-47 |
| Msa0178970 | Msa0860410 | 0.803756 | 2.994223e-49 | -8.615850e-47 |
| Msa0178970 | Msa0861130 | 0.816584 | 5.130176e-52 | -8.615850e-47 |
| Msa0178970 | Msa0868700 | 0.823431 | 1.390452e-53 | -8.615850e-47 |
| Msa0178970 | Msa0876580 | 0.816124 | 6.501807e-52 | -8.615850e-47 |
| Msa0178970 | Msa0877250 | 0.853859 | 1.808282e-61 | -8.615850e-47 |
| Msa0178970 | Msa0884470 | 0.804029 | 2.627775e-49 | -8.615850e-47 |
| Msa0178970 | Msa0907070 | 0.817184 | 3.760739e-52 | -8.615850e-47 |
| Msa0178970 | Msa0917880 | 0.919857 | 2.664330e-87 | -8.615850e-47 |
| Msa0178970 | Msa0927380 | 0.815589 | 8.555955e-52 | -8.615850e-47 |
| Msa0178970 | Msa0936300 | 0.810659 | 1.032410e-50 | -8.615850e-47 |
| Msa0178970 | Msa0947660 | 0.808035 | 3.774847e-50 | -8.615850e-47 |
| Msa0178970 | Msa0953120 | 0.815783 | 7.746635e-52 | -8.615850e-47 |
| Msa0178970 | Msa0958550 | 0.801426 | 9.057115e-49 | -8.615850e-47 |
| Msa0178970 | Msa0966750 | 0.812709 | 3.698663e-51 | -8.615850e-47 |
| Msa0178970 | Msa0969520 | 0.817532 | 3.141195e-52 | -8.615850e-47 |
| Msa0178970 | Msa0969670 | 0.812243 | 4.675940e-51 | -8.615850e-47 |
| Msa0178970 | Msa0973100 | 0.809389 | 1.938983e-50 | -8.615850e-47 |
| Msa0178970 | Msa0974080 | 0.800019 | 1.753809e-48 | -8.615850e-47 |
| Msa0178970 | Msa0976670 | 0.805427 | 1.341731e-49 | -8.615850e-47 |
| Msa0178970 | Msa0980090 | 0.838175 | 3.362202e-57 | -8.615850e-47 |
| Msa0178970 | Msa0983090 | 0.820757 | 5.794892e-53 | -8.615850e-47 |
| Msa0178970 | Msa0996170 | 0.802983 | 4.330868e-49 | -8.615850e-47 |
| Msa0178970 | Msa0998690 | 0.828752 | 7.548154e-55 | -8.615850e-47 |
| Msa0178970 | Msa1000860 | 0.804868 | 1.756889e-49 | -8.615850e-47 |
| Msa0178970 | Msa1000900 | 0.815515 | 8.886177e-52 | -8.615850e-47 |
| Msa0178970 | Msa1003620 | 0.806966 | 6.364141e-50 | -8.615850e-47 |
| Msa0178970 | Msa1014540 | 0.847304 | 1.258906e-59 | -8.615850e-47 |
| Msa0178970 | Msa1014990 | 0.810776 | 9.743791e-51 | -8.615850e-47 |
| Msa0178970 | Msa1037420 | 0.801848 | 7.417409e-49 | -8.615850e-47 |
| Msa0178970 | Msa1075220 | -0.802078 | 6.653432e-49 | -8.615850e-47 |
| Msa0178970 | Msa1075650 | 0.804393 | 2.207816e-49 | -8.615850e-47 |
| Msa0178970 | Msa1082500 | 0.805159 | 1.527477e-49 | -8.615850e-47 |
| Msa0178970 | Msa1082580 | 0.827110 | 1.874323e-54 | -8.615850e-47 |
| Msa0178970 | Msa1085740 | 0.838992 | 2.067561e-57 | -8.615850e-47 |
| Msa0178970 | Msa1090260 | 0.807810 | 4.214838e-50 | -8.615850e-47 |
| Msa0178970 | Msa1100050 | 0.809292 | 2.033687e-50 | -8.615850e-47 |
| Msa0178970 | Msa1137570 | 0.815797 | 7.689570e-52 | -8.615850e-47 |
| Msa0178970 | Msa1156020 | 0.898146 | 7.059801e-77 | -8.615850e-47 |
| Msa0178970 | Msa1162550 | -0.809064 | 2.276301e-50 | -8.615850e-47 |
| Msa0178970 | Msa1174040 | 0.830408 | 2.986582e-55 | -8.615850e-47 |
| Msa0178970 | Msa1199220 | 0.812381 | 4.363534e-51 | -8.615850e-47 |
| Msa0178970 | Msa1233500 | 0.814463 | 1.521201e-51 | -8.615850e-47 |
| Msa0178970 | Msa1233890 | 0.829762 | 4.294119e-55 | -8.615850e-47 |
| Msa0178970 | Msa1238930 | 0.809839 | 1.551359e-50 | -8.615850e-47 |
| Msa0178970 | Msa1244250 | 0.832698 | 8.149082e-56 | -8.615850e-47 |
| Msa0178970 | Msa1247250 | 0.800197 | 1.613552e-48 | -8.615850e-47 |
| Msa0178970 | Msa1249490 | 0.835332 | 1.784401e-56 | -8.615850e-47 |
| Msa0178970 | Msa1271210 | 0.817236 | 3.661100e-52 | -8.615850e-47 |
| Msa0178970 | Msa1275360 | 0.804894 | 1.734952e-49 | -8.615850e-47 |
| Msa0178970 | Msa1277660 | 0.817773 | 2.771706e-52 | -8.615850e-47 |
| Msa0178970 | Msa1281510 | 0.811674 | 6.219486e-51 | -8.615850e-47 |
| Msa0178970 | Msa1282580 | -0.812924 | 3.318750e-51 | -8.615850e-47 |
| Msa0178970 | Msa1284680 | 0.837230 | 5.875350e-57 | -8.615850e-47 |
| Msa0178970 | Msa1296280 | 0.802939 | 4.422698e-49 | -8.615850e-47 |
| Msa0178970 | Msa1296940 | 0.805878 | 1.078914e-49 | -8.615850e-47 |
| Msa0178970 | Msa1306750 | 0.804312 | 2.294781e-49 | -8.615850e-47 |
| Msa0178970 | Msa1306760 | 0.817911 | 2.579481e-52 | -8.615850e-47 |
| Msa0178970 | Msa1306850 | 0.801676 | 8.045830e-49 | -8.615850e-47 |
| Msa0178970 | Msa1313140 | 0.802750 | 4.836554e-49 | -8.615850e-47 |
| Msa0178970 | Msa1345220 | 0.801319 | 9.521955e-49 | -8.615850e-47 |
| Msa0178970 | Msa1348950 | 0.823934 | 1.060011e-53 | -8.615850e-47 |
| Msa0178970 | Msa1359040 | 0.819572 | 1.082591e-52 | -8.615850e-47 |
| Msa0178970 | Msa1362880 | 0.833269 | 5.876422e-56 | -8.615850e-47 |
| Msa0178970 | Msa1366810 | 0.805251 | 1.460810e-49 | -8.615850e-47 |
| Msa0178970 | Msa1369530 | 0.820975 | 5.161735e-53 | -8.615850e-47 |
| Msa0178970 | Msa1372760 | 0.811251 | 7.685902e-51 | -8.615850e-47 |
| Msa0178970 | Msa1394730 | 0.816520 | 5.302101e-52 | -8.615850e-47 |
| Msa0178970 | Msa1398610 | 0.807149 | 5.820383e-50 | -8.615850e-47 |
| Msa0178970 | Msa1411020 | 0.807188 | 5.711911e-50 | -8.615850e-47 |
| Msa0178970 | Msa1423870 | 0.800132 | 1.663517e-48 | -8.615850e-47 |
| Msa0178970 | Msa1424290 | 0.805993 | 1.020860e-49 | -8.615850e-47 |
| Msa0178970 | Msa1427230 | 0.833666 | 4.678935e-56 | -8.615850e-47 |
| Msa0178970 | Msa1434350 | 0.805904 | 1.065531e-49 | -8.615850e-47 |
| Msa0178970 | Msa1439320 | 0.810422 | 1.161787e-50 | -8.615850e-47 |
| Msa0178970 | Msa1441190 | 0.820026 | 8.526100e-53 | -8.615850e-47 |
| Msa0178970 | Msa1451620 | -0.821485 | 3.938927e-53 | -8.615850e-47 |
| Msa0178970 | Msa1455490 | 0.811306 | 7.478612e-51 | -8.615850e-47 |
| Msa0178970 | Msa1458750 | 0.800961 | 1.127450e-48 | -8.615850e-47 |
| Msa0178970 | Msa1460830 | 0.830877 | 2.292691e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0178970 | MtrunA17_Chr1g0198761 | 75.510 | 735 | 179 | 1 | 31 | 764 | 16 | 750 | 0.0 | 1175 |
| Msa0178970 | MtrunA17_Chr5g0431001 | 91.909 | 482 | 39 | 0 | 1 | 482 | 1 | 482 | 0.0 | 932 |
| Msa0178970 | MtrunA17_Chr2g0276841 | 47.680 | 625 | 316 | 5 | 60 | 681 | 69 | 685 | 0.0 | 629 |
| Msa0178970 | MtrunA17_Chr2g0294841 | 42.454 | 709 | 380 | 7 | 60 | 747 | 44 | 745 | 0.0 | 605 |
| Msa0178970 | MtrunA17_Chr2g0290391 | 46.034 | 643 | 310 | 8 | 61 | 683 | 51 | 676 | 0.0 | 574 |
| Msa0178970 | MtrunA17_Chr1g0202341 | 29.472 | 682 | 442 | 15 | 13 | 677 | 10 | 669 | 1.48e-85 | 285 |
| Msa0178970 | MtrunA17_Chr5g0448761 | 31.293 | 588 | 380 | 9 | 61 | 634 | 60 | 637 | 4.43e-82 | 278 |
| Msa0178970 | MtrunA17_Chr3g0080351 | 30.494 | 587 | 350 | 18 | 61 | 627 | 76 | 624 | 6.84e-76 | 263 |
| Msa0178970 | MtrunA17_Chr2g0296781 | 28.905 | 685 | 430 | 20 | 67 | 724 | 3 | 657 | 1.09e-75 | 259 |
| Msa0178970 | MtrunA17_Chr2g0329031 | 27.273 | 682 | 446 | 16 | 67 | 734 | 20 | 665 | 1.84e-71 | 248 |
| Msa0178970 | MtrunA17_Chr6g0477261 | 31.091 | 550 | 341 | 15 | 194 | 718 | 4 | 540 | 1.77e-69 | 241 |
| Msa0178970 | MtrunA17_Chr6g0458391 | 27.778 | 576 | 379 | 11 | 58 | 627 | 222 | 766 | 8.95e-68 | 238 |
| Msa0178970 | MtrunA17_Chr8g0363841 | 26.677 | 671 | 439 | 16 | 62 | 699 | 18 | 668 | 1.96e-67 | 236 |
| Msa0178970 | MtrunA17_Chr1g0203051 | 27.273 | 605 | 386 | 14 | 28 | 613 | 52 | 621 | 1.56e-66 | 233 |
| Msa0178970 | MtrunA17_Chr1g0207551 | 29.340 | 576 | 379 | 12 | 61 | 627 | 34 | 590 | 2.10e-66 | 236 |
| Msa0178970 | MtrunA17_Chr5g0441581 | 28.675 | 551 | 359 | 13 | 86 | 623 | 51 | 580 | 8.82e-66 | 231 |
| Msa0178970 | MtrunA17_Chr2g0287651 | 28.034 | 585 | 388 | 13 | 53 | 625 | 68 | 631 | 1.38e-65 | 234 |
| Msa0178970 | MtrunA17_Chr3g0082121 | 29.776 | 581 | 364 | 17 | 60 | 627 | 42 | 591 | 8.25e-64 | 226 |
| Msa0178970 | MtrunA17_Chr5g0440451 | 25.680 | 662 | 430 | 15 | 61 | 695 | 43 | 669 | 3.32e-62 | 225 |
| Msa0178970 | MtrunA17_Chr2g0287061 | 26.935 | 646 | 382 | 17 | 40 | 671 | 165 | 734 | 5.27e-61 | 220 |
| Msa0178970 | MtrunA17_Chr1g0203721 | 26.506 | 581 | 388 | 12 | 64 | 627 | 66 | 624 | 5.11e-60 | 218 |
| Msa0178970 | MtrunA17_Chr2g0324011 | 26.724 | 580 | 388 | 10 | 61 | 625 | 10 | 567 | 1.19e-56 | 204 |
| Msa0178970 | MtrunA17_Chr5g0448511 | 30.952 | 378 | 255 | 3 | 249 | 621 | 16 | 392 | 1.67e-56 | 202 |
| Msa0178970 | MtrunA17_Chr1g0196541 | 26.817 | 578 | 375 | 14 | 67 | 623 | 3 | 553 | 1.80e-56 | 206 |
| Msa0178970 | MtrunA17_Chr3g0118611 | 29.481 | 424 | 288 | 7 | 203 | 621 | 79 | 496 | 1.98e-53 | 198 |
| Msa0178970 | MtrunA17_Chr2g0291581 | 25.764 | 687 | 429 | 17 | 38 | 685 | 43 | 687 | 5.38e-53 | 195 |
| Msa0178970 | MtrunA17_Chr5g0430921 | 97.647 | 85 | 2 | 0 | 680 | 764 | 1 | 85 | 1.06e-52 | 177 |
| Msa0178970 | MtrunA17_Chr3g0081281 | 86.957 | 92 | 12 | 0 | 210 | 301 | 2 | 93 | 3.12e-48 | 165 |
| Msa0178970 | MtrunA17_Chr2g0291591 | 24.296 | 568 | 373 | 14 | 20 | 565 | 25 | 557 | 1.62e-39 | 154 |
| Msa0178970 | MtrunA17_Chr1g0164591 | 34.314 | 204 | 132 | 2 | 262 | 464 | 106 | 308 | 2.23e-35 | 137 |
| Msa0178970 | MtrunA17_Chr7g0258861 | 25.338 | 296 | 195 | 6 | 61 | 347 | 10 | 288 | 1.78e-20 | 93.2 |
| Msa0178970 | MtrunA17_Chr2g0308841 | 26.407 | 231 | 160 | 5 | 418 | 643 | 14 | 239 | 8.23e-18 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0178970 | AT1G10240.2 | 46.006 | 676 | 350 | 8 | 30 | 697 | 11 | 679 | 0.0 | 624 |
| Msa0178970 | AT1G10240.1 | 46.006 | 676 | 350 | 8 | 30 | 697 | 11 | 679 | 0.0 | 624 |
| Msa0178970 | AT5G28530.3 | 42.185 | 659 | 355 | 6 | 31 | 678 | 27 | 670 | 0.0 | 553 |
| Msa0178970 | AT5G28530.2 | 42.185 | 659 | 355 | 6 | 31 | 678 | 27 | 670 | 0.0 | 553 |
| Msa0178970 | AT5G28530.1 | 42.033 | 659 | 360 | 6 | 31 | 678 | 27 | 674 | 0.0 | 551 |
| Msa0178970 | AT5G28530.5 | 38.367 | 649 | 331 | 8 | 31 | 678 | 27 | 607 | 3.72e-152 | 458 |
| Msa0178970 | AT5G28530.4 | 38.213 | 649 | 336 | 8 | 31 | 678 | 27 | 611 | 1.18e-151 | 457 |
| Msa0178970 | AT4G38180.1 | 31.993 | 572 | 371 | 7 | 61 | 625 | 73 | 633 | 1.22e-85 | 288 |
| Msa0178970 | AT4G15090.1 | 28.447 | 689 | 447 | 17 | 61 | 727 | 51 | 715 | 1.80e-81 | 278 |
| Msa0178970 | AT4G15090.5 | 28.447 | 689 | 447 | 17 | 61 | 727 | 51 | 715 | 1.80e-81 | 278 |
| Msa0178970 | AT4G15090.3 | 28.447 | 689 | 447 | 17 | 61 | 727 | 51 | 715 | 1.80e-81 | 278 |
| Msa0178970 | AT4G15090.2 | 28.447 | 689 | 447 | 17 | 61 | 727 | 51 | 715 | 1.80e-81 | 278 |
| Msa0178970 | AT4G15090.4 | 28.447 | 689 | 447 | 17 | 61 | 727 | 51 | 715 | 1.80e-81 | 278 |
| Msa0178970 | AT1G76320.3 | 27.986 | 561 | 374 | 12 | 67 | 621 | 3 | 539 | 9.92e-66 | 231 |
| Msa0178970 | AT1G76320.2 | 27.986 | 561 | 374 | 12 | 67 | 621 | 3 | 539 | 1.02e-65 | 233 |
| Msa0178970 | AT1G76320.1 | 27.986 | 561 | 374 | 12 | 67 | 621 | 3 | 539 | 1.08e-65 | 233 |
| Msa0178970 | AT1G76320.4 | 27.986 | 561 | 374 | 12 | 67 | 621 | 3 | 539 | 1.08e-65 | 233 |
| Msa0178970 | AT3G22170.2 | 26.791 | 642 | 402 | 21 | 61 | 679 | 70 | 666 | 3.68e-65 | 233 |
| Msa0178970 | AT3G22170.1 | 26.791 | 642 | 402 | 21 | 61 | 679 | 70 | 666 | 3.68e-65 | 233 |
| Msa0178970 | AT3G06250.2 | 26.087 | 575 | 358 | 12 | 61 | 627 | 190 | 705 | 1.16e-57 | 210 |
| Msa0178970 | AT3G06250.1 | 26.087 | 575 | 358 | 12 | 61 | 627 | 190 | 705 | 1.16e-57 | 210 |
| Msa0178970 | AT3G06250.3 | 26.087 | 575 | 358 | 12 | 61 | 627 | 190 | 705 | 1.16e-57 | 210 |
| Msa0178970 | AT2G27110.2 | 26.485 | 623 | 404 | 17 | 61 | 675 | 49 | 625 | 1.72e-56 | 208 |
| Msa0178970 | AT2G27110.1 | 26.485 | 623 | 404 | 17 | 61 | 675 | 49 | 625 | 1.72e-56 | 208 |
| Msa0178970 | AT5G18960.2 | 26.079 | 579 | 356 | 13 | 61 | 627 | 211 | 729 | 4.91e-56 | 206 |
| Msa0178970 | AT5G18960.1 | 26.079 | 579 | 356 | 13 | 61 | 627 | 211 | 729 | 4.91e-56 | 206 |
| Msa0178970 | AT2G27110.3 | 29.505 | 444 | 294 | 11 | 240 | 675 | 48 | 480 | 9.40e-54 | 198 |
| Msa0178970 | AT2G32250.8 | 23.810 | 630 | 413 | 13 | 67 | 691 | 3 | 570 | 1.03e-50 | 190 |
| Msa0178970 | AT2G32250.7 | 23.810 | 630 | 413 | 13 | 67 | 691 | 3 | 570 | 1.27e-50 | 190 |
| Msa0178970 | AT4G38170.1 | 30.513 | 390 | 260 | 6 | 244 | 627 | 16 | 400 | 2.74e-49 | 182 |
| Msa0178970 | AT2G32250.5 | 25.455 | 440 | 316 | 5 | 256 | 691 | 180 | 611 | 3.55e-48 | 183 |
| Msa0178970 | AT2G32250.6 | 25.455 | 440 | 316 | 5 | 256 | 691 | 180 | 611 | 6.96e-48 | 182 |
| Msa0178970 | AT2G32250.1 | 25.455 | 440 | 316 | 5 | 256 | 691 | 180 | 611 | 6.96e-48 | 182 |
| Msa0178970 | AT2G32250.3 | 25.455 | 440 | 316 | 5 | 256 | 691 | 180 | 611 | 6.96e-48 | 182 |
| Msa0178970 | AT2G32250.2 | 25.455 | 440 | 316 | 5 | 256 | 691 | 180 | 611 | 7.46e-48 | 182 |
| Msa0178970 | AT2G32250.4 | 25.455 | 440 | 316 | 5 | 256 | 691 | 180 | 611 | 7.46e-48 | 182 |
| Msa0178970 | AT4G19990.5 | 26.621 | 586 | 357 | 17 | 63 | 625 | 23 | 558 | 2.58e-47 | 180 |
| Msa0178970 | AT4G19990.3 | 26.621 | 586 | 357 | 17 | 63 | 625 | 23 | 558 | 2.78e-47 | 180 |
| Msa0178970 | AT4G19990.4 | 26.621 | 586 | 357 | 17 | 63 | 625 | 23 | 558 | 2.78e-47 | 180 |
| Msa0178970 | AT4G19990.7 | 26.621 | 586 | 357 | 17 | 63 | 625 | 37 | 572 | 2.82e-47 | 180 |
| Msa0178970 | AT4G19990.6 | 26.621 | 586 | 357 | 17 | 63 | 625 | 23 | 558 | 3.30e-47 | 180 |
| Msa0178970 | AT4G19990.2 | 26.621 | 586 | 357 | 17 | 63 | 625 | 23 | 558 | 3.30e-47 | 180 |
| Msa0178970 | AT1G52520.1 | 26.801 | 597 | 359 | 22 | 61 | 624 | 85 | 636 | 7.05e-46 | 175 |
| Msa0178970 | AT4G19990.1 | 25.933 | 536 | 332 | 14 | 112 | 625 | 9 | 501 | 4.91e-43 | 167 |
| Msa0178970 | AT1G80010.1 | 24.715 | 615 | 362 | 21 | 61 | 624 | 95 | 659 | 3.99e-41 | 161 |
| Msa0178970 | AT3G59470.3 | 36.283 | 113 | 61 | 4 | 61 | 173 | 70 | 171 | 5.19e-11 | 64.3 |
| Msa0178970 | AT3G59470.1 | 36.283 | 113 | 61 | 4 | 61 | 173 | 70 | 171 | 5.19e-11 | 64.3 |
| Msa0178970 | AT3G59470.2 | 36.283 | 113 | 61 | 4 | 61 | 173 | 82 | 183 | 6.28e-11 | 64.3 |
Find 130 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTACATGACTAGATTT+TGG | 0.131548 | 1_4:+66393045 | None:intergenic |
| TCTTTACCCATCGTAAATTT+TGG | 0.158198 | 1_4:-66393678 | Msa0178970:CDS |
| ATGAGATGCCTCTTGGAATA+TGG | 0.196486 | 1_4:-66394179 | Msa0178970:CDS |
| TTCTCACAACCACGAGTTAT+TGG | 0.199264 | 1_4:-66394601 | Msa0178970:CDS |
| TCGAATTAGAGACTGAAATT+TGG | 0.209475 | 1_4:+66393002 | None:intergenic |
| ATCACATGTTCTTGAGTTTC+AGG | 0.210618 | 1_4:+66392889 | None:intergenic |
| AACGTCACAGTCATCATTAT+TGG | 0.232373 | 1_4:+66392846 | None:intergenic |
| ACAGTTTGATCAAAACTATT+TGG | 0.236534 | 1_4:+66392495 | None:intergenic |
| CTCATGTTGAAGCAACTTAA+AGG | 0.248230 | 1_4:+66393323 | None:intergenic |
| CCAATTAAAACACACTTATT+AGG | 0.249451 | 1_4:+66392646 | None:intergenic |
| TGTTTATTTGCAAAACAAAA+TGG | 0.260407 | 1_4:-66394867 | Msa0178970:CDS |
| AAAATCTGTCAAACTTGTTT+TGG | 0.261322 | 1_4:+66393561 | None:intergenic |
| TTCCTTCGCATGGGCTATAA+AGG | 0.299718 | 1_4:-66394088 | Msa0178970:intron |
| ATTCGCGCATATGAAGCTTT+TGG | 0.302502 | 1_4:-66394243 | Msa0178970:CDS |
| AATATCATCATAAAGATAAA+AGG | 0.310779 | 1_4:-66392916 | Msa0178970:CDS |
| TCAAGAACATGTGATTGATT+TGG | 0.314506 | 1_4:-66392881 | Msa0178970:CDS |
| GCAGCTTCAACCCCTCCTTT+TGG | 0.339248 | 1_4:+66392775 | None:intergenic |
| ATTCAATCATATAGTGGTAT+TGG | 0.341059 | 1_4:-66394399 | Msa0178970:CDS |
| AATTGATGAAAGTAACAAAT+TGG | 0.343540 | 1_4:-66394295 | Msa0178970:CDS |
| ACTCTCGCTATAAGACTTAC+AGG | 0.343612 | 1_4:+66394489 | None:intergenic |
| CGAATTAGAGACTGAAATTT+GGG | 0.344971 | 1_4:+66393003 | None:intergenic |
| CAAATTGGAGCATATTGTTT+GGG | 0.347369 | 1_4:-66394280 | Msa0178970:CDS |
| CATCAATTGTGAATTCATAT+TGG | 0.348150 | 1_4:+66394310 | None:intergenic |
| GAGCATATTGTTTGGGCATT+TGG | 0.348974 | 1_4:-66394273 | Msa0178970:CDS |
| ACAAATTGGAGCATATTGTT+TGG | 0.352856 | 1_4:-66394281 | Msa0178970:CDS |
| ATGACAACGACGAGGCTTCT+TGG | 0.366012 | 1_4:+66392753 | None:intergenic |
| TCAGTCTCTAATTCGATGTT+TGG | 0.372448 | 1_4:-66392995 | Msa0178970:CDS |
| ATGGTCTCACAGTTTGGTTT+GGG | 0.387072 | 1_4:-66393724 | Msa0178970:CDS |
| AATGGTCTCACAGTTTGGTT+TGG | 0.398201 | 1_4:-66393725 | Msa0178970:CDS |
| CCTCAAGTCACTAACATTGA+TGG | 0.399508 | 1_4:-66395056 | Msa0178970:CDS |
| AGTGAATTAGACAGATGAAT+TGG | 0.402311 | 1_4:-66392440 | Msa0178970:three_prime_UTR |
| GCAATGGCTTCTTTAATTGA+AGG | 0.406562 | 1_4:+66393916 | None:intergenic |
| TCAAATATTTGCCCTTCAAA+AGG | 0.411166 | 1_4:+66395026 | None:intergenic |
| TCCATTGATCCATCTTGCTT+CGG | 0.415346 | 1_4:-66395390 | Msa0178970:five_prime_UTR |
| ATACTAGTAATTACACAGTT+TGG | 0.415911 | 1_4:+66392310 | None:intergenic |
| ATCCATCGGGTGTTTATAAG+AGG | 0.417116 | 1_4:-66394788 | Msa0178970:CDS |
| TTTGCTGGAATGACAACAAC+AGG | 0.418779 | 1_4:-66393628 | Msa0178970:CDS |
| GTCATCTTGAAATAGTGAAT+TGG | 0.425948 | 1_4:-66392531 | Msa0178970:three_prime_UTR |
| AAAGTAATGGTCTCACAGTT+TGG | 0.427267 | 1_4:-66393730 | Msa0178970:CDS |
| GTAGTTACTAAGAGAACAAT+TGG | 0.430532 | 1_4:-66394660 | Msa0178970:CDS |
| TGAGATGCCTCTTGGAATAT+GGG | 0.433904 | 1_4:-66394178 | Msa0178970:CDS |
| TTGGGCCTTAGCTTATTTGA+AGG | 0.435274 | 1_4:-66393659 | Msa0178970:CDS |
| TATACGACCACCATCAACTT+TGG | 0.437731 | 1_4:+66393233 | None:intergenic |
| CTTTAAACATGAGTTTCATA+AGG | 0.439926 | 1_4:-66393794 | Msa0178970:CDS |
| GACGAGGCATGTTCTTCAAT+AGG | 0.443666 | 1_4:+66393363 | None:intergenic |
| ATGCGATCTTGATCAACAAT+TGG | 0.445860 | 1_4:+66394537 | None:intergenic |
| TGATTAGTTCCACCACAATC+TGG | 0.446933 | 1_4:+66392727 | None:intergenic |
| AACCGTTATGAGATGCCTCT+TGG | 0.448749 | 1_4:-66394186 | Msa0178970:CDS |
| AAAGACAAGTGAACGAGAAC+AGG | 0.453486 | 1_4:-66392959 | Msa0178970:CDS |
| CATGTAATAAACTGCAATGA+TGG | 0.453622 | 1_4:-66393033 | Msa0178970:CDS |
| GTTTGTCATCGTGGTGGTAT+TGG | 0.458689 | 1_4:-66394759 | Msa0178970:CDS |
| CAGATAGCGGGAAAGGGTAA+AGG | 0.460958 | 1_4:+66395499 | None:intergenic |
| TGGTAAAGAAAGTGATGCTT+CGG | 0.463955 | 1_4:-66394379 | Msa0178970:CDS |
| ATATTATTATTGTCTAAAGC+TGG | 0.466482 | 1_4:-66394516 | Msa0178970:CDS |
| CTCACAGTTTGGTTTGGGTG+TGG | 0.468983 | 1_4:-66393719 | Msa0178970:CDS |
| ATAACGGTTTATTCTATATG+TGG | 0.472493 | 1_4:+66394200 | None:intergenic |
| AACTGGGCAGATAGCGGGAA+AGG | 0.478957 | 1_4:+66395492 | None:intergenic |
| AAAACAAAAGGTCGGCCAAA+AGG | 0.495104 | 1_4:-66392805 | Msa0178970:CDS |
| TTGATAGGATCATGAAGGGT+TGG | 0.498564 | 1_4:-66392559 | Msa0178970:three_prime_UTR |
| TGAAGCAACTTAAAGGCATA+AGG | 0.499495 | 1_4:+66393330 | None:intergenic |
| AGAAGATTTCTTCCTTCGCA+TGG | 0.503824 | 1_4:-66394098 | Msa0178970:CDS |
| CGTTGTCATGTTCCAGATTG+TGG | 0.504732 | 1_4:-66392739 | Msa0178970:CDS |
| AATTGTGAATTCATATTGGA+AGG | 0.507660 | 1_4:+66394314 | None:intergenic |
| CCAAAAGGATCAAGACCAAA+AGG | 0.514192 | 1_4:-66392790 | Msa0178970:CDS |
| CTTTCTCGTCTCCATCGAAA+AGG | 0.515070 | 1_4:+66393078 | None:intergenic |
| AGATAGCGGGAAAGGGTAAA+GGG | 0.516008 | 1_4:+66395500 | None:intergenic |
| GTCAAAATTAGAAATCAAGC+TGG | 0.517568 | 1_4:-66393441 | Msa0178970:CDS |
| TTTAATTGAAGGATCTTGAT+CGG | 0.518039 | 1_4:+66393927 | None:intergenic |
| TGGTAATAATAAACTATAGC+AGG | 0.519610 | 1_4:+66392330 | None:intergenic |
| ATTGGAATGTTACGATAAGC+AGG | 0.522557 | 1_4:+66394555 | None:intergenic |
| TAAGCAATGATGCTAGTGAT+TGG | 0.525487 | 1_4:-66395085 | Msa0178970:CDS |
| ACCACGCAAAACTGTTGAAG+TGG | 0.526679 | 1_4:-66394733 | Msa0178970:CDS |
| TGGGTTGGTGTTGATAATCA+TGG | 0.529258 | 1_4:-66394159 | Msa0178970:CDS |
| TTCCAAGAGGCATCTCATAA+CGG | 0.531646 | 1_4:+66394184 | None:intergenic |
| CAACATCATACCAAAGTTGA+TGG | 0.538288 | 1_4:-66393243 | Msa0178970:CDS |
| TGAACGAGAATGGAAAGTAA+TGG | 0.544871 | 1_4:-66393743 | Msa0178970:CDS |
| ACCGAAGCAAGATGGATCAA+TGG | 0.546537 | 1_4:+66395389 | None:intergenic |
| ATGTTATTGACTCGAGGCAA+GGG | 0.551467 | 1_4:+66394954 | None:intergenic |
| CTCAAGTCACTAACATTGAT+GGG | 0.551567 | 1_4:-66395055 | Msa0178970:CDS |
| GAAGATTTCTTCCTTCGCAT+GGG | 0.556681 | 1_4:-66394097 | Msa0178970:CDS |
| GTGCTTTGATAGGATCATGA+AGG | 0.556862 | 1_4:-66392564 | Msa0178970:three_prime_UTR |
| AAAGTCCTTCAAATAAGCTA+AGG | 0.560983 | 1_4:+66393654 | None:intergenic |
| CGAGTCAATAACATTGATGA+GGG | 0.562576 | 1_4:-66394945 | Msa0178970:CDS |
| GTTTGGCAATTCCATTGCAA+TGG | 0.567761 | 1_4:+66393900 | None:intergenic |
| GGAAAATGTGTTGTAATCTG+AGG | 0.568974 | 1_4:+66393384 | None:intergenic |
| ATGTGATTGTAGTGCAAAGA+TGG | 0.570079 | 1_4:-66394682 | Msa0178970:CDS |
| ATGTTAGTGACTTGAGGCAA+GGG | 0.572230 | 1_4:+66395062 | None:intergenic |
| GTGTCTGAAGAGAATCCATC+GGG | 0.572540 | 1_4:-66394801 | Msa0178970:CDS |
| ACTGGGCAGATAGCGGGAAA+GGG | 0.574204 | 1_4:+66395493 | None:intergenic |
| AATTAAAGAAGCCATTGCAA+TGG | 0.576797 | 1_4:-66393911 | Msa0178970:CDS |
| TAGAAATCAAGCTGGAGAAG+AGG | 0.577533 | 1_4:-66393433 | Msa0178970:CDS |
| CGAGTTATTGGATGACAAAG+AGG | 0.580002 | 1_4:-66394589 | Msa0178970:CDS |
| AATGTTATTGACTCGAGGCA+AGG | 0.583411 | 1_4:+66394953 | None:intergenic |
| TACTAAGAGAACAATTGGCA+TGG | 0.583498 | 1_4:-66394655 | Msa0178970:CDS |
| AGTCACTAACATTGATGGGT+GGG | 0.589348 | 1_4:-66395051 | Msa0178970:CDS |
| TTGTCGCAAAGCTGTCAAGT+TGG | 0.589381 | 1_4:-66393849 | Msa0178970:CDS |
| TAGAGACTGAAATTTGGGAG+AGG | 0.592397 | 1_4:+66393008 | None:intergenic |
| TCATCATATCTCGAACCTAG+TGG | 0.597376 | 1_4:+66393817 | None:intergenic |
| AATGTTAGTGACTTGAGGCA+AGG | 0.597462 | 1_4:+66395061 | None:intergenic |
| AGGGAATTTGTTTGTCATCG+TGG | 0.598966 | 1_4:-66394768 | Msa0178970:CDS |
| TCCCTCTTATAAACACCCGA+TGG | 0.599604 | 1_4:+66394786 | None:intergenic |
| TACCTTTATAGCCCATGCGA+AGG | 0.601051 | 1_4:+66394086 | None:intergenic |
| ACATGTGATTGATTTGGAAG+CGG | 0.601602 | 1_4:-66392875 | Msa0178970:CDS |
| TGTGTCTGAAGAGAATCCAT+CGG | 0.605132 | 1_4:-66394802 | Msa0178970:CDS |
| CTGTTGAAGTGGAAAATCAA+AGG | 0.606328 | 1_4:-66394722 | Msa0178970:CDS |
| CTTTGTCATCCAATAACTCG+TGG | 0.606716 | 1_4:+66394592 | None:intergenic |
| AAGGATCAAGACCAAAAGGA+GGG | 0.611165 | 1_4:-66392786 | Msa0178970:CDS |
| CCATCAATGTTAGTGACTTG+AGG | 0.613145 | 1_4:+66395056 | None:intergenic |
| CTAAGGCCCAAAATTTACGA+TGG | 0.615020 | 1_4:+66393671 | None:intergenic |
| TAAGGCCCAAAATTTACGAT+GGG | 0.615697 | 1_4:+66393672 | None:intergenic |
| ATGCCTCTTGGAATATGGGT+TGG | 0.616141 | 1_4:-66394174 | Msa0178970:CDS |
| TCGAGTCAATAACATTGATG+AGG | 0.618775 | 1_4:-66394946 | Msa0178970:CDS |
| GAATTTGTTTGTCATCGTGG+TGG | 0.618777 | 1_4:-66394765 | Msa0178970:CDS |
| AAGTCACTAACATTGATGGG+TGG | 0.624878 | 1_4:-66395052 | Msa0178970:CDS |
| TCCATCGGGTGTTTATAAGA+GGG | 0.625908 | 1_4:-66394787 | Msa0178970:CDS |
| TGTCATGTTCCAGATTGTGG+TGG | 0.637809 | 1_4:-66392736 | Msa0178970:CDS |
| AGTGAATTGGACAGATGAAG+CGG | 0.644693 | 1_4:-66392518 | Msa0178970:three_prime_UTR |
| CTCTCGCTATAAGACTTACA+GGG | 0.647869 | 1_4:+66394490 | None:intergenic |
| TCATCAATGTTATTGACTCG+AGG | 0.652221 | 1_4:+66394948 | None:intergenic |
| AAAGGATCAAGACCAAAAGG+AGG | 0.655085 | 1_4:-66392787 | Msa0178970:CDS |
| GCAGCAATTGAAGCTGACAA+TGG | 0.657455 | 1_4:-66393279 | Msa0178970:CDS |
| CACTTATTAGGAGATTGAGA+AGG | 0.671859 | 1_4:+66392658 | None:intergenic |
| ACACCAACCCATATTCCAAG+AGG | 0.676376 | 1_4:+66394171 | None:intergenic |
| TGCTTTGATAGGATCATGAA+GGG | 0.676443 | 1_4:-66392563 | Msa0178970:three_prime_UTR |
| AAGTTTGAAAGATCGAGATG+AGG | 0.682349 | 1_4:-66394337 | Msa0178970:CDS |
| CATCATACCAAAGTTGATGG+TGG | 0.683172 | 1_4:-66393240 | Msa0178970:CDS |
| AGGATCAAGACCAAAAGGAG+GGG | 0.696841 | 1_4:-66392785 | Msa0178970:CDS |
| ATAAGGTGTGAGTATAGACG+AGG | 0.720548 | 1_4:+66393347 | None:intergenic |
| GAGTCAATAACATTGATGAG+GGG | 0.722596 | 1_4:-66394944 | Msa0178970:CDS |
| TCTGGAACATGACAACGACG+AGG | 0.797744 | 1_4:+66392745 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATAAATAAAATAGAATTT+GGG | + | chr1_4:66392601-66392620 | None:intergenic | 10.0% |
| !! | ATCATAAATAAAATAGAATT+TGG | + | chr1_4:66392602-66392621 | None:intergenic | 10.0% |
| !!! | TAATATTAACTGTATTTTTA+TGG | - | chr1_4:66395196-66395215 | Msa0178970:intron | 10.0% |
| !! | TTAGTTAAGAATTATATACA+TGG | + | chr1_4:66392546-66392565 | None:intergenic | 15.0% |
| !! | CATAAATAAAATAGAATTTG+GGG | + | chr1_4:66392600-66392619 | None:intergenic | 15.0% |
| !!! | AATTTTATTCAATCATATAG+TGG | - | chr1_4:66393377-66393396 | Msa0178970:CDS | 15.0% |
| !! | AATATCATCATAAAGATAAA+AGG | - | chr1_4:66394866-66394885 | Msa0178970:CDS | 15.0% |
| !!! | GTTTGTTTCTTTTCTTTTAA+TGG | - | chr1_4:66392476-66392495 | Msa0178970:three_prime_UTR | 20.0% |
| !! | TGTTTATTTGCAAAACAAAA+TGG | - | chr1_4:66392915-66392934 | Msa0178970:CDS | 20.0% |
| !!! | AACAAAATGGATTTTCTATT+AGG | - | chr1_4:66392928-66392947 | Msa0178970:CDS | 20.0% |
| !!! | ATATTATTATTGTCTAAAGC+TGG | - | chr1_4:66393266-66393285 | Msa0178970:CDS | 20.0% |
| !!! | CTAATATCTTTTTCTAAGAA+TGG | + | chr1_4:66393356-66393375 | None:intergenic | 20.0% |
| !! | AATTGATGAAAGTAACAAAT+TGG | - | chr1_4:66393487-66393506 | Msa0178970:intron | 20.0% |
| !!! | CATGGAAATTCAATTTTTTT+TGG | - | chr1_4:66393641-66393660 | Msa0178970:CDS | 20.0% |
| !!! | TGATTGTTATATTTTTGTGT+AGG | - | chr1_4:66394307-66394326 | Msa0178970:CDS | 20.0% |
| !!! | TTATTACATGACTAGATTTT+GGG | + | chr1_4:66394739-66394758 | None:intergenic | 20.0% |
| !!! | TTTATTACATGACTAGATTT+TGG | + | chr1_4:66394740-66394759 | None:intergenic | 20.0% |
| !!! | TGTGTAATTAGTATATTTTG+TGG | - | chr1_4:66395386-66395405 | Msa0178970:five_prime_UTR | 20.0% |
| ! | TTGAGAACATAATATTTACC+TGG | + | chr1_4:66392432-66392451 | None:intergenic | 25.0% |
| ! | AACACAAACTTAGCTAATTT+GGG | + | chr1_4:66392518-66392537 | None:intergenic | 25.0% |
| ! | AAACACAAACTTAGCTAATT+TGG | + | chr1_4:66392519-66392538 | None:intergenic | 25.0% |
| !! | TCAAATATTTTCCCTTCAAA+AGG | + | chr1_4:66392867-66392886 | None:intergenic | 25.0% |
| ! | CTTGAGTTAGAGAAAAAAAT+AGG | - | chr1_4:66393317-66393336 | Msa0178970:CDS | 25.0% |
| ! | ATTCAATCATATAGTGGTAT+TGG | - | chr1_4:66393383-66393402 | Msa0178970:CDS | 25.0% |
| ! | AATTGTGAATTCATATTGGA+AGG | + | chr1_4:66393471-66393490 | None:intergenic | 25.0% |
| ! | CATCAATTGTGAATTCATAT+TGG | + | chr1_4:66393475-66393494 | None:intergenic | 25.0% |
| ! | ATAACGGTTTATTCTATATG+TGG | + | chr1_4:66393585-66393604 | None:intergenic | 25.0% |
| ! | TTTAATTGAAGGATCTTGAT+CGG | + | chr1_4:66393858-66393877 | None:intergenic | 25.0% |
| ! | CTTTAAACATGAGTTTCATA+AGG | - | chr1_4:66393988-66394007 | Msa0178970:intron | 25.0% |
| !!! | AAAATCTGTCAAACTTGTTT+TGG | + | chr1_4:66394224-66394243 | None:intergenic | 25.0% |
| !!! | TGTTATATTTTTGTGTAGGT+TGG | - | chr1_4:66394311-66394330 | Msa0178970:CDS | 25.0% |
| !! | TGTAAAGAGTTTCAATTTTC+AGG | - | chr1_4:66394611-66394630 | Msa0178970:CDS | 25.0% |
| !!! | CCTTTTGTTTTTGAAACAAT+AGG | + | chr1_4:66394968-66394987 | None:intergenic | 25.0% |
| ! | CCTATTGTTTCAAAAACAAA+AGG | - | chr1_4:66394965-66394984 | Msa0178970:CDS | 25.0% |
| ! | TTGTTTCAAAAACAAAAGGT+CGG | - | chr1_4:66394969-66394988 | Msa0178970:CDS | 25.0% |
| ! | TCCAAACAAAAAGAGAAAAA+TGG | - | chr1_4:66395093-66395112 | Msa0178970:CDS | 25.0% |
| !!! | TCCATTTTTCTCTTTTTGTT+TGG | + | chr1_4:66395097-66395116 | None:intergenic | 25.0% |
| ! | CCAATTAAAACACACTTATT+AGG | + | chr1_4:66395139-66395158 | None:intergenic | 25.0% |
| !!! | CCTAATAAGTGTGTTTTAAT+TGG | - | chr1_4:66395136-66395155 | Msa0178970:intron | 25.0% |
| !!! | TATTTTTATGGTGCTTTGAT+AGG | - | chr1_4:66395208-66395227 | Msa0178970:intron | 25.0% |
| ! | ACAGTTTGATCAAAACTATT+TGG | + | chr1_4:66395290-66395309 | None:intergenic | 25.0% |
| !! | TGTGTAATTAGTGAATTTTG+TGG | - | chr1_4:66395307-66395326 | Msa0178970:intron | 25.0% |
| ! | TGGTAATAATAAACTATAGC+AGG | + | chr1_4:66395455-66395474 | None:intergenic | 25.0% |
| ! | ATACTAGTAATTACACAGTT+TGG | + | chr1_4:66395475-66395494 | None:intergenic | 25.0% |
| ! | ACAAAGTGAATGAGCTATTT+TGG | + | chr1_4:66392350-66392369 | None:intergenic | 30.0% |
| AATAGCTCATTCACTTTGTT+CGG | - | chr1_4:66392351-66392370 | Msa0178970:three_prime_UTR | 30.0% | |
| ACACAAACTTAGCTAATTTG+GGG | + | chr1_4:66392517-66392536 | None:intergenic | 30.0% | |
| TCAAATATTTGCCCTTCAAA+AGG | + | chr1_4:66392759-66392778 | None:intergenic | 30.0% | |
| GTAGTTACTAAGAGAACAAT+TGG | - | chr1_4:66393122-66393141 | Msa0178970:CDS | 30.0% | |
| AATTGGCATGGAGAAAAAAT+GGG | - | chr1_4:66393139-66393158 | Msa0178970:CDS | 30.0% | |
| TTAGAGAAAAAAATAGGCAC+AGG | - | chr1_4:66393323-66393342 | Msa0178970:CDS | 30.0% | |
| ACAAATTGGAGCATATTGTT+TGG | - | chr1_4:66393501-66393520 | Msa0178970:intron | 30.0% | |
| CAAATTGGAGCATATTGTTT+GGG | - | chr1_4:66393502-66393521 | Msa0178970:intron | 30.0% | |
| ! | ATTTTCCTTTCACAAAAGCT+AGG | + | chr1_4:66393817-66393836 | None:intergenic | 30.0% |
| ! | TGATCGGTAAGAATTGTTTT+TGG | + | chr1_4:66393842-66393861 | None:intergenic | 30.0% |
| AATTAAAGAAGCCATTGCAA+TGG | - | chr1_4:66393871-66393890 | Msa0178970:CDS | 30.0% | |
| ! | CAAAATGCATGTTTTGTGTT+TGG | + | chr1_4:66393902-66393921 | None:intergenic | 30.0% |
| ! | CAAAACATGCATTTTGCATA+TGG | - | chr1_4:66393906-66393925 | Msa0178970:CDS | 30.0% |
| ! | TCTTTACCCATCGTAAATTT+TGG | - | chr1_4:66394104-66394123 | Msa0178970:CDS | 30.0% |
| ! | CTTTACCCATCGTAAATTTT+GGG | - | chr1_4:66394105-66394124 | Msa0178970:CDS | 30.0% |
| AAAGTCCTTCAAATAAGCTA+AGG | + | chr1_4:66394131-66394150 | None:intergenic | 30.0% | |
| !!! | TTGAAGGACTTTTTTTTTGC+TGG | - | chr1_4:66394139-66394158 | Msa0178970:CDS | 30.0% |
| GTCAAAATTAGAAATCAAGC+TGG | - | chr1_4:66394341-66394360 | Msa0178970:CDS | 30.0% | |
| !! | CGAAAAGGAAGATATTTTGA+TGG | + | chr1_4:66394692-66394711 | None:intergenic | 30.0% |
| ! | CAAAATATCTTCCTTTTCGA+TGG | - | chr1_4:66394693-66394712 | Msa0178970:CDS | 30.0% |
| CATGTAATAAACTGCAATGA+TGG | - | chr1_4:66394749-66394768 | Msa0178970:CDS | 30.0% | |
| CGAATTAGAGACTGAAATTT+GGG | + | chr1_4:66394782-66394801 | None:intergenic | 30.0% | |
| TCGAATTAGAGACTGAAATT+TGG | + | chr1_4:66394783-66394802 | None:intergenic | 30.0% | |
| ! | GATATTTTCTAACTCTCTTG+TGG | + | chr1_4:66394852-66394871 | None:intergenic | 30.0% |
| TCAAGAACATGTGATTGATT+TGG | - | chr1_4:66394901-66394920 | Msa0178970:CDS | 30.0% | |
| GTCATCTTGAAATAGTGAAT+TGG | - | chr1_4:66395251-66395270 | Msa0178970:intron | 30.0% | |
| AGTGAATTAGACAGATGAAT+TGG | - | chr1_4:66395342-66395361 | Msa0178970:intron | 30.0% | |
| !! | GATTCTTTTGGTTGGAAACT+GGG | + | chr1_4:66392309-66392328 | None:intergenic | 35.0% |
| !! | TGATTCTTTTGGTTGGAAAC+TGG | + | chr1_4:66392310-66392329 | None:intergenic | 35.0% |
| !! | AAGTGAATGAGCTATTTTGG+AGG | + | chr1_4:66392347-66392366 | None:intergenic | 35.0% |
| AACAAACAATGAGTGCAAGA+TGG | + | chr1_4:66392463-66392482 | None:intergenic | 35.0% | |
| CACAAACTTAGCTAATTTGG+GGG | + | chr1_4:66392516-66392535 | None:intergenic | 35.0% | |
| TAAGCAATGATGCTAGTGAT+TGG | - | chr1_4:66392697-66392716 | Msa0178970:CDS | 35.0% | |
| CTCAAGTCACTAACATTGAT+GGG | - | chr1_4:66392727-66392746 | Msa0178970:CDS | 35.0% | |
| !! | TCATCAATGTTATTGACTCG+AGG | + | chr1_4:66392837-66392856 | None:intergenic | 35.0% |
| TCGAGTCAATAACATTGATG+AGG | - | chr1_4:66392836-66392855 | Msa0178970:CDS | 35.0% | |
| CGAGTCAATAACATTGATGA+GGG | - | chr1_4:66392837-66392856 | Msa0178970:CDS | 35.0% | |
| GAGTCAATAACATTGATGAG+GGG | - | chr1_4:66392838-66392857 | Msa0178970:CDS | 35.0% | |
| CTGTTGAAGTGGAAAATCAA+AGG | - | chr1_4:66393060-66393079 | Msa0178970:CDS | 35.0% | |
| ATGTGATTGTAGTGCAAAGA+TGG | - | chr1_4:66393100-66393119 | Msa0178970:CDS | 35.0% | |
| TACTAAGAGAACAATTGGCA+TGG | - | chr1_4:66393127-66393146 | Msa0178970:CDS | 35.0% | |
| CAATTGGCATGGAGAAAAAA+TGG | - | chr1_4:66393138-66393157 | Msa0178970:CDS | 35.0% | |
| ATTGGAATGTTACGATAAGC+AGG | + | chr1_4:66393230-66393249 | None:intergenic | 35.0% | |
| ATGCGATCTTGATCAACAAT+TGG | + | chr1_4:66393248-66393267 | None:intergenic | 35.0% | |
| TGGTAAAGAAAGTGATGCTT+CGG | - | chr1_4:66393403-66393422 | Msa0178970:CDS | 35.0% | |
| AAGTTTGAAAGATCGAGATG+AGG | - | chr1_4:66393445-66393464 | Msa0178970:CDS | 35.0% | |
| !! | AGTTTCCTAGCTTTTGTGAA+AGG | - | chr1_4:66393809-66393828 | Msa0178970:CDS | 35.0% |
| GCAATGGCTTCTTTAATTGA+AGG | + | chr1_4:66393869-66393888 | None:intergenic | 35.0% | |
| !!! | AGTTGGTTTTCTTTTCCACT+AGG | - | chr1_4:66393950-66393969 | Msa0178970:CDS | 35.0% |
| ! | CAGATGATTTTGAACGAGAA+TGG | - | chr1_4:66394029-66394048 | Msa0178970:intron | 35.0% |
| TGAACGAGAATGGAAAGTAA+TGG | - | chr1_4:66394039-66394058 | Msa0178970:intron | 35.0% | |
| AAAGTAATGGTCTCACAGTT+TGG | - | chr1_4:66394052-66394071 | Msa0178970:intron | 35.0% | |
| TAAGGCCCAAAATTTACGAT+GGG | + | chr1_4:66394113-66394132 | None:intergenic | 35.0% | |
| GGAAAATGTGTTGTAATCTG+AGG | + | chr1_4:66394401-66394420 | None:intergenic | 35.0% | |
| ! | TGAAGCAACTTAAAGGCATA+AGG | + | chr1_4:66394455-66394474 | None:intergenic | 35.0% |
| CTCATGTTGAAGCAACTTAA+AGG | + | chr1_4:66394462-66394481 | None:intergenic | 35.0% | |
| CAACATCATACCAAAGTTGA+TGG | - | chr1_4:66394539-66394558 | Msa0178970:CDS | 35.0% | |
| TCAGTCTCTAATTCGATGTT+TGG | - | chr1_4:66394787-66394806 | Msa0178970:CDS | 35.0% | |
| ATCACATGTTCTTGAGTTTC+AGG | + | chr1_4:66394896-66394915 | None:intergenic | 35.0% | |
| !! | ACATGTGATTGATTTGGAAG+CGG | - | chr1_4:66394907-66394926 | Msa0178970:CDS | 35.0% |
| AACGTCACAGTCATCATTAT+TGG | + | chr1_4:66394939-66394958 | None:intergenic | 35.0% | |
| CACTTATTAGGAGATTGAGA+AGG | + | chr1_4:66395127-66395146 | None:intergenic | 35.0% | |
| TGCTTTGATAGGATCATGAA+GGG | - | chr1_4:66395219-66395238 | Msa0178970:intron | 35.0% | |
| !! | CATTTTGATCAAAGCAGCTT+CGG | + | chr1_4:66395368-66395387 | None:intergenic | 35.0% |
| ! | GCAGTCTTGATTCTTTTGGT+TGG | + | chr1_4:66392317-66392336 | None:intergenic | 40.0% |
| ! | CTGAGCAGTCTTGATTCTTT+TGG | + | chr1_4:66392321-66392340 | None:intergenic | 40.0% |
| TCCATTGATCCATCTTGCTT+CGG | - | chr1_4:66392392-66392411 | Msa0178970:three_prime_UTR | 40.0% | |
| TCGGTCAAAAAGCTAATTCC+AGG | - | chr1_4:66392411-66392430 | Msa0178970:three_prime_UTR | 40.0% | |
| ATGTTAGTGACTTGAGGCAA+GGG | + | chr1_4:66392723-66392742 | None:intergenic | 40.0% | |
| AATGTTAGTGACTTGAGGCA+AGG | + | chr1_4:66392724-66392743 | None:intergenic | 40.0% | |
| CCATCAATGTTAGTGACTTG+AGG | + | chr1_4:66392729-66392748 | None:intergenic | 40.0% | |
| CCTCAAGTCACTAACATTGA+TGG | - | chr1_4:66392726-66392745 | Msa0178970:CDS | 40.0% | |
| AAGTCACTAACATTGATGGG+TGG | - | chr1_4:66392730-66392749 | Msa0178970:CDS | 40.0% | |
| ! | AGTCACTAACATTGATGGGT+GGG | - | chr1_4:66392731-66392750 | Msa0178970:CDS | 40.0% |
| !! | ATGTTATTGACTCGAGGCAA+GGG | + | chr1_4:66392831-66392850 | None:intergenic | 40.0% |
| !! | AATGTTATTGACTCGAGGCA+AGG | + | chr1_4:66392832-66392851 | None:intergenic | 40.0% |
| ! | ATGAGGGGATTCCTTTTGAA+GGG | - | chr1_4:66392853-66392872 | Msa0178970:CDS | 40.0% |
| TGTGTCTGAAGAGAATCCAT+CGG | - | chr1_4:66392980-66392999 | Msa0178970:CDS | 40.0% | |
| ATCCATCGGGTGTTTATAAG+AGG | - | chr1_4:66392994-66393013 | Msa0178970:CDS | 40.0% | |
| TCCATCGGGTGTTTATAAGA+GGG | - | chr1_4:66392995-66393014 | Msa0178970:CDS | 40.0% | |
| ! | AGGGAATTTGTTTGTCATCG+TGG | - | chr1_4:66393014-66393033 | Msa0178970:CDS | 40.0% |
| ! | GAATTTGTTTGTCATCGTGG+TGG | - | chr1_4:66393017-66393036 | Msa0178970:CDS | 40.0% |
| TTCTCACAACCACGAGTTAT+TGG | - | chr1_4:66393181-66393200 | Msa0178970:CDS | 40.0% | |
| CTTTGTCATCCAATAACTCG+TGG | + | chr1_4:66393193-66393212 | None:intergenic | 40.0% | |
| CGAGTTATTGGATGACAAAG+AGG | - | chr1_4:66393193-66393212 | Msa0178970:CDS | 40.0% | |
| CTCTCGCTATAAGACTTACA+GGG | + | chr1_4:66393295-66393314 | None:intergenic | 40.0% | |
| ACTCTCGCTATAAGACTTAC+AGG | + | chr1_4:66393296-66393315 | None:intergenic | 40.0% | |
| GAGCATATTGTTTGGGCATT+TGG | - | chr1_4:66393509-66393528 | Msa0178970:intron | 40.0% | |
| ! | ATTCGCGCATATGAAGCTTT+TGG | - | chr1_4:66393539-66393558 | Msa0178970:intron | 40.0% |
| !! | TTCCAAGAGGCATCTCATAA+CGG | + | chr1_4:66393601-66393620 | None:intergenic | 40.0% |
| ATGAGATGCCTCTTGGAATA+TGG | - | chr1_4:66393603-66393622 | Msa0178970:CDS | 40.0% | |
| TGAGATGCCTCTTGGAATAT+GGG | - | chr1_4:66393604-66393623 | Msa0178970:CDS | 40.0% | |
| !! | TGGGTTGGTGTTGATAATCA+TGG | - | chr1_4:66393623-66393642 | Msa0178970:CDS | 40.0% |
| AGAAGATTTCTTCCTTCGCA+TGG | - | chr1_4:66393684-66393703 | Msa0178970:CDS | 40.0% | |
| GAAGATTTCTTCCTTCGCAT+GGG | - | chr1_4:66393685-66393704 | Msa0178970:CDS | 40.0% | |
| GTTTGGCAATTCCATTGCAA+TGG | + | chr1_4:66393885-66393904 | None:intergenic | 40.0% | |
| TCATCATATCTCGAACCTAG+TGG | + | chr1_4:66393968-66393987 | None:intergenic | 40.0% | |
| AATGGTCTCACAGTTTGGTT+TGG | - | chr1_4:66394057-66394076 | Msa0178970:intron | 40.0% | |
| ! | ATGGTCTCACAGTTTGGTTT+GGG | - | chr1_4:66394058-66394077 | Msa0178970:intron | 40.0% |
| CTAAGGCCCAAAATTTACGA+TGG | + | chr1_4:66394114-66394133 | None:intergenic | 40.0% | |
| TTGGGCCTTAGCTTATTTGA+AGG | - | chr1_4:66394123-66394142 | Msa0178970:CDS | 40.0% | |
| TTTGCTGGAATGACAACAAC+AGG | - | chr1_4:66394154-66394173 | Msa0178970:CDS | 40.0% | |
| TAGAAATCAAGCTGGAGAAG+AGG | - | chr1_4:66394349-66394368 | Msa0178970:CDS | 40.0% | |
| ATAAGGTGTGAGTATAGACG+AGG | + | chr1_4:66394438-66394457 | None:intergenic | 40.0% | |
| !! | CATCATACCAAAGTTGATGG+TGG | - | chr1_4:66394542-66394561 | Msa0178970:CDS | 40.0% |
| TATACGACCACCATCAACTT+TGG | + | chr1_4:66394552-66394571 | None:intergenic | 40.0% | |
| TAGAGACTGAAATTTGGGAG+AGG | + | chr1_4:66394777-66394796 | None:intergenic | 40.0% | |
| AAAGACAAGTGAACGAGAAC+AGG | - | chr1_4:66394823-66394842 | Msa0178970:CDS | 40.0% | |
| AAAACAAAAGGTCGGCCAAA+AGG | - | chr1_4:66394977-66394996 | Msa0178970:CDS | 40.0% | |
| !!! | CCTTTTGGTCTTGATCCTTT+TGG | + | chr1_4:66394995-66395014 | None:intergenic | 40.0% |
| CCAAAAGGATCAAGACCAAA+AGG | - | chr1_4:66394992-66395011 | Msa0178970:CDS | 40.0% | |
| AAAGGATCAAGACCAAAAGG+AGG | - | chr1_4:66394995-66395014 | Msa0178970:CDS | 40.0% | |
| AAGGATCAAGACCAAAAGGA+GGG | - | chr1_4:66394996-66395015 | Msa0178970:CDS | 40.0% | |
| ! | TGATTAGTTCCACCACAATC+TGG | + | chr1_4:66395058-66395077 | None:intergenic | 40.0% |
| GTGCTTTGATAGGATCATGA+AGG | - | chr1_4:66395218-66395237 | Msa0178970:intron | 40.0% | |
| TTGATAGGATCATGAAGGGT+TGG | - | chr1_4:66395223-66395242 | Msa0178970:intron | 40.0% | |
| AGTGAATTGGACAGATGAAG+CGG | - | chr1_4:66395264-66395283 | Msa0178970:intron | 40.0% | |
| !! | AGATAGCGGGAAAGGGTAAA+GGG | + | chr1_4:66392285-66392304 | None:intergenic | 45.0% |
| ACCGAAGCAAGATGGATCAA+TGG | + | chr1_4:66392396-66392415 | None:intergenic | 45.0% | |
| ! | GCTTTTTGACCGAAGCAAGA+TGG | + | chr1_4:66392404-66392423 | None:intergenic | 45.0% |
| !! | ATGGGTGGGTTCCTTTTGAA+GGG | - | chr1_4:66392745-66392764 | Msa0178970:CDS | 45.0% |
| ! | GATGAGGGGATTCCTTTTGA+AGG | - | chr1_4:66392852-66392871 | Msa0178970:CDS | 45.0% |
| GTGTCTGAAGAGAATCCATC+GGG | - | chr1_4:66392981-66393000 | Msa0178970:CDS | 45.0% | |
| TCCCTCTTATAAACACCCGA+TGG | + | chr1_4:66392999-66393018 | None:intergenic | 45.0% | |
| GTTTGTCATCGTGGTGGTAT+TGG | - | chr1_4:66393023-66393042 | Msa0178970:CDS | 45.0% | |
| ACCACGCAAAACTGTTGAAG+TGG | - | chr1_4:66393049-66393068 | Msa0178970:CDS | 45.0% | |
| ! | TCCACTTCAACAGTTTTGCG+TGG | + | chr1_4:66393053-66393072 | None:intergenic | 45.0% |
| TGGCATGGAGAAAAAATGGG+TGG | - | chr1_4:66393142-66393161 | Msa0178970:CDS | 45.0% | |
| AACCGTTATGAGATGCCTCT+TGG | - | chr1_4:66393596-66393615 | Msa0178970:CDS | 45.0% | |
| ATGCCTCTTGGAATATGGGT+TGG | - | chr1_4:66393608-66393627 | Msa0178970:CDS | 45.0% | |
| ACACCAACCCATATTCCAAG+AGG | + | chr1_4:66393614-66393633 | None:intergenic | 45.0% | |
| ! | TTCCTTCGCATGGGCTATAA+AGG | - | chr1_4:66393694-66393713 | Msa0178970:CDS | 45.0% |
| TACCTTTATAGCCCATGCGA+AGG | + | chr1_4:66393699-66393718 | None:intergenic | 45.0% | |
| TTGTCGCAAAGCTGTCAAGT+TGG | - | chr1_4:66393933-66393952 | Msa0178970:CDS | 45.0% | |
| GACGAGGCATGTTCTTCAAT+AGG | + | chr1_4:66394422-66394441 | None:intergenic | 45.0% | |
| GCAGCAATTGAAGCTGACAA+TGG | - | chr1_4:66394503-66394522 | Msa0178970:CDS | 45.0% | |
| CTTTCTCGTCTCCATCGAAA+AGG | + | chr1_4:66394707-66394726 | None:intergenic | 45.0% | |
| AGGATCAAGACCAAAAGGAG+GGG | - | chr1_4:66394997-66395016 | Msa0178970:CDS | 45.0% | |
| CGTTGTCATGTTCCAGATTG+TGG | - | chr1_4:66395043-66395062 | Msa0178970:CDS | 45.0% | |
| TGTCATGTTCCAGATTGTGG+TGG | - | chr1_4:66395046-66395065 | Msa0178970:CDS | 45.0% | |
| !!! | ATTTTTATTTTTAAGAAAAT+AGG | - | chr1_4:66392633-66392652 | Msa0178970:CDS | 5.0% |
| !! | CAGATAGCGGGAAAGGGTAA+AGG | + | chr1_4:66392286-66392305 | None:intergenic | 50.0% |
| TTGGAAACTGGGCAGATAGC+GGG | + | chr1_4:66392298-66392317 | None:intergenic | 50.0% | |
| GTTGGAAACTGGGCAGATAG+CGG | + | chr1_4:66392299-66392318 | None:intergenic | 50.0% | |
| !! | GATGGGTGGGTTCCTTTTGA+AGG | - | chr1_4:66392744-66392763 | Msa0178970:CDS | 50.0% |
| !! | CTCACAGTTTGGTTTGGGTG+TGG | - | chr1_4:66394063-66394082 | Msa0178970:intron | 50.0% |
| ATGACAACGACGAGGCTTCT+TGG | + | chr1_4:66395032-66395051 | None:intergenic | 50.0% | |
| ! | TCTGGAACATGACAACGACG+AGG | + | chr1_4:66395040-66395059 | None:intergenic | 50.0% |
| !! | ACTGGGCAGATAGCGGGAAA+GGG | + | chr1_4:66392292-66392311 | None:intergenic | 55.0% |
| !! | AACTGGGCAGATAGCGGGAA+AGG | + | chr1_4:66392293-66392312 | None:intergenic | 55.0% |
| ! | GCAGCTTCAACCCCTCCTTT+TGG | + | chr1_4:66395010-66395029 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 66392271 | 66395533 | 66392271 | ID=Msa0178970;Name=Msa0178970 |
| chr1_4 | mRNA | 66392271 | 66395533 | 66392271 | ID=Msa0178970-mRNA-1;Parent=Msa0178970;Name=Msa0178970-mRNA-1;_AED=0.00;_eAED=0.00;_QI=123|1|1|1|0.5|0.4|5|350|776 |
| chr1_4 | exon | 66392271 | 66393475 | 66392271 | ID=Msa0178970-mRNA-1:exon:21737;Parent=Msa0178970-mRNA-1 |
| chr1_4 | exon | 66393552 | 66393995 | 66393552 | ID=Msa0178970-mRNA-1:exon:21736;Parent=Msa0178970-mRNA-1 |
| chr1_4 | exon | 66394089 | 66395149 | 66394089 | ID=Msa0178970-mRNA-1:exon:21735;Parent=Msa0178970-mRNA-1 |
| chr1_4 | exon | 66395372 | 66395437 | 66395372 | ID=Msa0178970-mRNA-1:exon:21734;Parent=Msa0178970-mRNA-1 |
| chr1_4 | exon | 66395506 | 66395533 | 66395506 | ID=Msa0178970-mRNA-1:exon:21733;Parent=Msa0178970-mRNA-1 |
| chr1_4 | five_prime_UTR | 66395506 | 66395533 | 66395506 | ID=Msa0178970-mRNA-1:five_prime_utr;Parent=Msa0178970-mRNA-1 |
| chr1_4 | five_prime_UTR | 66395372 | 66395437 | 66395372 | ID=Msa0178970-mRNA-1:five_prime_utr;Parent=Msa0178970-mRNA-1 |
| chr1_4 | five_prime_UTR | 66395121 | 66395149 | 66395121 | ID=Msa0178970-mRNA-1:five_prime_utr;Parent=Msa0178970-mRNA-1 |
| chr1_4 | CDS | 66394089 | 66395120 | 66394089 | ID=Msa0178970-mRNA-1:cds;Parent=Msa0178970-mRNA-1 |
| chr1_4 | CDS | 66393552 | 66393995 | 66393552 | ID=Msa0178970-mRNA-1:cds;Parent=Msa0178970-mRNA-1 |
| chr1_4 | CDS | 66392621 | 66393475 | 66392621 | ID=Msa0178970-mRNA-1:cds;Parent=Msa0178970-mRNA-1 |
| chr1_4 | three_prime_UTR | 66392271 | 66392620 | 66392271 | ID=Msa0178970-mRNA-1:three_prime_utr;Parent=Msa0178970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
